pre-miRNA Information
pre-miRNA hsa-mir-3622b   
Genomic Coordinates chr8: 27701673 - 27701767
Description Homo sapiens miR-3622b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3622b-3p
Sequence 58| UCACCUGAGCUCCCGUGCCUG |78
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1232922758 2 dbSNP
rs530939348 5 dbSNP
rs1439657384 10 dbSNP
rs1157333896 12 dbSNP
rs66683138 14 dbSNP
rs1044808718 15 dbSNP
rs946438979 19 dbSNP
rs551845360 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SIKE1   
Synonyms SIKE
Description suppressor of IKBKE 1
Transcript NM_001102396   
Other Transcripts NM_025073   
Expression
Putative miRNA Targets on SIKE1
3'UTR of SIKE1
(miRNA target sites are highlighted)
>SIKE1|NM_001102396|3'UTR
   1 CTGAACTCTGAATGATGGCTGGAGATTGTCTATCAAGGAAGGAAGTTACTGTCTTCCCATTCAAGTACTGTCCATTAAGT
  81 GTCTTGCCTCAGATTTGATTTAATCTTAATTAAAGGTATCAGGTGGCAATTTAGAATTCCAGTCAATATTGGCTGTCCAC
 161 AGTTCTCAGATGTGTTAATGTGAATACTACATGCTGAATTTCACCATTCCTTTCTCAAAGAGACTACTTTTAATTTTCAT
 241 TTCTGGGACCTTGATTTATATAAACTATGTTTTCAGTTCTTTGTTATTTTTCACATCTCTGAAACTTTGAGCATTTTTTA
 321 TAAGCCAGCAATTTATTTTACATAGCATTGTAAAATACACTTCTAGGAAATTTTAGGAAAGATTTAACTGTTTAAATCTA
 401 TTTGGCATAAACCTTGATTTTTTTTTTCCATTTGACAAAAATAATACAATTCCACAGAACTAGATCAGCAGATTCTCTGA
 481 TTTGTAATGTCATTCACCTGTGACATTTTAAGTCTCTCTGGTGCTAAGAATTGGCACTTTATAGCCTGGTGCCTTTACTT
 561 TTAATTTGAGAGAACCTACTGCTAGTCCCAGGAAACACACTTGGAAATAAGTCAGCTATTTTTTTTGCCCAGTGATGCTA
 641 TAGTTGTCATATTGTCCAAAGTTCATATTGTTCAAAGCTGAGGAGCTTGTCCTGTGTATGTGAATGCACACATGTGCACT
 721 TAGTTCAAATACTAAAAGTAGCTTTTATTAAATATAATCAGCCAAAAACACACACAAAATAAAAAAAACAAATATAAGTA
 801 GTCAGTTTTTCAATGTTATCCTACTAGTTCTACATTCTATTTTAATTTTTATACAATTTCCATTTTATAGTTAAGAACCA
 881 TCACTTACTTGGATTGGATGTCTTTCATTCCTAGCACTAATAGTTGGCTTTCTTTTTTTTTGTTTACATAGAAGCAGGGT
 961 TTTTTTTTATCTTTTTTCTTTTTTTTTGTTTAAGCTATATAAAAAGGTGAGGAAGCAGTTTTGTTACCTAATGAAAATTA
1041 TTACACTCATAATGCTGTGTAGGCAACATTGAGATTCAAATGCCCAGTGGTCAACTGGGTTCACTCATCAACTCATTCCC
1121 GTCCCAGTTTACTCACATTTCAAATTTATAAATTTCTTCATGTTATACTATTCTATTTAGATTTGCCCAGAATTAGTTGA
1201 AATAATGCTAAACCTGTCAATATTTTCCAGTAACATTAAGCACCATACTGCATGGGAGAGACACAGTACTAAAAAGAGTT
1281 GTTAGTGCTTTATGTGAGTGATATTTCTTTCGTAATGCTATAAAGAACTACAGTTAAAATAACAAAATATTTTAAAGATG
1361 TCCTAAAAGCATCTGATCCCAGTAATAACTAATGGATGTCATCTAGAGCAGTGGGTGTTAATGAATAGGTATATGTCATT
1441 TAAGAATTTTTCAAATTTCTGTTTGATATCCTGCATAGAATTTGACAAAAAAAACACTTCCAAGTGTGAGCATTTTTTAT
1521 TTCATTTCCCAAGAGTAAGTAAGTAACTATTAGCCCAGCCATCTGCCTCGAAGTATACCTTAAGTGACCCCATAAATCCA
1601 TTCAAGAGGCAGGTACTCTATACCATTTGGCAGCCACGGCCAAACCTACCATGGCCAGATTTCAGTGAAAATGATGAAGT
1681 AATCAAATCAAGGTATAATATGGTGTCCCTTTATGTGCTTTATGTTCCTTTAGAGCTGTTTATAAAGTTCTTTATATCTC
1761 AAGTGTTAGGATAAATCGACATACTAACTTTTCCCCCTGCAAAATTAAAAGCCTGAGGTACAAGTCTAAGAAGCTTTTAG
1841 TGCTCTACATAATATAAATTCTGGCTGGTGTTAATGCTATGAAGATAATATGTAGTTAGAAAATTGAGTCGGGGAGGAAT
1921 GCTCTTCATTTTAAGTGGATTTTAAAGTTTCTCCTTGAGTGGATGAAGAACTTGCCTGGTTTGCAAAAATCTTAGTTCAA
2001 AATTATATTTTCTAACAAAAACTGCATTTTGAGAAGATAAGCTAATTTTACTCAGTAGTAAGTCAAATGAGGAAGTGCAG
2081 AGGGTTTTTTTACATATATATAGCAACCTTGTCAAGTGGTCCTCACAAGAGTCATAAATACTTTGTAATTAGCACAGTAT
2161 ATTCAGCAGTGTATAACTCTACAAATAGTACCTTATATTAGTGTAGTATTATATCAATATCTTATGTATAATTCTTATAT
2241 TAATACCTTATGCATAATTGGATTCAAACATTGAAGGTCTATTTTAGTGTTCTTCAAAATGTGCTTCCCTGACCTACTGA
2321 AATAGAAACTTGGTGATGAAGTTCAAGAATTTGTATTCTAATCATCTCAAACAATTCCTAAAGACACTGATTTTAAAATA
2401 TCTAGTCTAGGCCCCATTGTGTAATAGTTAGCACTCTAAAAGATGAAAAAGAAAATAGTCTATGTGCCAACCACTTCATT
2481 AGTACTTATGAATTTAAAAATGAAAAAGTCTGGTACAGGAGACAAGTATATATATAAAATTATAATGCAGTGTGATAAAT
2561 CCATTATAGTATGTATAAGATACAGAAGAGGGACTTTAAACTTGAGAATTCAATAGAGATAATAAATGGGTAGGAGGGAA
2641 ATAGAAAACTTTGGTGCCACAAAAGCAAAGTATGTATGGTATTGCCAATAATAGCTACCATCTATTGAGTGCTTTACTAC
2721 CTGTCAGGTACTGTATTATATAAACTCCATTTTAACTGTACCTCATTTTGCAGATACTCAGGCACAAGGAGGTGGTTATT
2801 TGTCCAAACTGGAACCAAGATTCAAACCCAGACAGAGTCTTAAGCACATTTTTAATCACTAACTAACTTGAGATGCCTAA
2881 ATGCCAAATACTGTTGGGAGTTCAAGTGGTTCTTGATTAGCAAAATCTATTTTTATTAGTGCAAAAGAAACACCACAGCT
2961 TATAAAGTATTATGAATTCAATAAATGGAGTCTTAACTAATGAGATATTATTTTCTAGAATGGTGTAGCTGAGAGTATGT
3041 GTGATTCAACTGAAAGGAATAATGTTTAATCAGTGACTCTTACTATATACAGGAAAAGGTGCAGTTCTGTCTTTCAAATC
3121 TGCCTCCTTACCATATTGGCTTACATCCCTCATGCTGTTTTCTTGTGTTTGCTAGAAAGTTGTTGCCAAGCCAAATGTCA
3201 TGGCCATGTTGAAGGCAAGGAAGAAAAAATGGAAATGGCCTGTGCCAGCTATATATATCGCCTTTTATGAGGGAAAGCAA
3281 AGCTTTCTCAGAAATCCCAAATGGATTTTCCCTTGACTTAATTGCCTGACCAGTTAAATGGCCACTGGTACCTGCAAAGA
3361 AAGCAGGGTACATAGCTGTCCCAAATAAAATCAGTATTAGCAAGAAGAAAGAATATTGAGAAAGCAATTAACAGTGTCTG
3441 TGACTGTGACATGTCTGTGACTTTATATTGTCAAGTCCTTTCCCCTTGAATATAGTTTTGGAAGAATTAGCTGAAGGAGT
3521 GTGTTGACATTGAATGGCCAAGAGAATGGGCTGTAGCAGACATCTGTCATTTCTCTTTTGGCTGCCCAGTATCCTAACTC
3601 CTGTGTTTAAGGAATCCCTCACCTAATGAGGCAGAGCATTTCTTCCTCCTAAAGAATTTGAAAGTACCAGGTAATGTTTT
3681 CTCAGCCTCCTTTTGCAGCTAAGGAAGAAACATCTGCCTTCAATTTTAAAATTAGTGATACAAAGAAGGAGGGAACCATG
3761 CAGATTCCTTTGAAGATGGTGATTAACAACACTACTGCATTCATCTCCACAGAGGTACAGCAAAAGTGATTTAGTTAGCG
3841 ATAACCTCTAATTCTATTTTTTTATTTTTATTTTTTGAGACAGTCTTGCTCTGTCAACCAGGCTGGAGTGCAGTAGCACT
3921 GTCTTAACTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTCGCTGGGATTACAAG
4001 TGCCCACCACCATGCACAGCTAATTTTTGTGTTTTTAGTAGATGGGGTTTCTCCATGTTGGCCAGGCTGGTCTCGAACTT
4081 ATGACTTCAGGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACTGTGCCTGGCCTGTAAC
4161 CTCTAATTCTTGTTTGCTGGCTGTCCTAGAGATCCTGAGAATTACTTTTAATAAAATCATTTTTTTGCTGTTATTAAAAC
4241 TAACCTGAATTGCCTAAAACCAAGAACTCTGCTTGATAAAATAAGCATAGTTTTAGGAACAGCCATGCAGATATAAATTT
4321 TATCAACACTTTATACATAATTTGGGACTTATATTTAAATGTAATATTTGATGCTTATAAAAGGGTAAATGGGGAATGCA
4401 AATAAATTATCAAGCATAATAACTCATCACCTAACTTAAGAATAACATTATGAGTGCTTGTATTTTATCTATTTGAGCTC
4481 TTCTCCTATCTTTGCCGACCCCCCCGCTCTCTTTTTAATAGATTTGTTCGAATGTAGAAAGACCTAAAATACATATGTAT
4561 CCCTAAAGTGACTTATTTTATAGTTTTCTTTCTTTTTGAACTTCAAAAAAATTGTATCATACTCTATGTAGTCTAAGGAT
4641 TTGGTTTTTTTCACTCAACATGTCTCTAGAATTCACAAGTTTTATTGTTTTATAGCTGTCATTTTCATTGATGTATATTT
4721 CATTGTTGGGTTATACAACATATTGTTAAGGAATACATACATATATAATAAATTATACATTTTTTAAAAAAAAAAAAAAA
4801 AAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' guccgugccCUCGAGUCCACu 5'
                   || :||||||| 
Target 5' cgaacttatGACTTCAGGTGa 3'
4074 - 4094 148.00 -13.80
2
miRNA  3' guccgUGCCCUCGAGUCCACu 5'
               | || |  ||||||| 
Target 5' aattaAAGGTA--TCAGGTGg 3'
108 - 126 144.00 -14.30
3
miRNA  3' guccguGCCCUCGAGUCCACu 5'
                :|||||:||| ||| 
Target 5' tactgtTGGGAGTTCAAGTGg 3'
2889 - 2909 135.00 -20.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31504939 42 COSMIC
COSN31522750 185 COSMIC
COSN31524069 189 COSMIC
COSN31610503 220 COSMIC
COSN30542801 336 COSMIC
COSN31522730 344 COSMIC
COSN31516286 475 COSMIC
COSN31517408 508 COSMIC
COSN22739184 539 COSMIC
COSN30169739 572 COSMIC
COSN8887920 575 COSMIC
COSN7173008 959 COSMIC
COSN15845425 960 COSMIC
COSN24280528 1705 COSMIC
COSN22390541 2153 COSMIC
COSN1402236 2506 COSMIC
COSN21370985 2562 COSMIC
COSN5999425 2642 COSMIC
COSN21542854 3124 COSMIC
COSN1087440 3149 COSMIC
COSN26451123 3231 COSMIC
COSN5999424 3376 COSMIC
COSN22403766 3485 COSMIC
COSN23625201 3600 COSMIC
COSN6503664 3841 COSMIC
COSN29313870 3918 COSMIC
COSN5999423 4002 COSMIC
COSN8887919 4278 COSMIC
COSN24550923 4428 COSMIC
COSN5730879 4768 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs760013760 4 dbSNP
rs1266147971 8 dbSNP
rs751027238 13 dbSNP
rs772748214 21 dbSNP
rs1250452023 26 dbSNP
rs17032895 32 dbSNP
rs761547513 37 dbSNP
rs773819427 38 dbSNP
rs907284598 42 dbSNP
rs768503848 46 dbSNP
rs749104188 51 dbSNP
rs1359980828 56 dbSNP
rs1199473293 58 dbSNP
rs1312432121 68 dbSNP
rs1437889939 79 dbSNP
rs1432974617 81 dbSNP
rs780330487 111 dbSNP
rs1030957255 116 dbSNP
rs757229006 128 dbSNP
rs1004839364 129 dbSNP
rs533252203 139 dbSNP
rs149222550 146 dbSNP
rs544353939 152 dbSNP
rs1466012189 168 dbSNP
rs1428413481 169 dbSNP
rs1044936290 171 dbSNP
rs1397687433 174 dbSNP
rs1183947747 176 dbSNP
rs1012051612 187 dbSNP
rs573417169 189 dbSNP
rs376104437 191 dbSNP
rs1247599788 193 dbSNP
rs1483748191 194 dbSNP
rs1049102334 198 dbSNP
rs1219692777 204 dbSNP
rs930674747 210 dbSNP
rs561416848 214 dbSNP
rs1195255556 217 dbSNP
rs1256928718 218 dbSNP
rs919248763 227 dbSNP
rs539918254 228 dbSNP
rs1185329813 229 dbSNP
rs1484416710 235 dbSNP
rs900684921 247 dbSNP
rs1477994263 267 dbSNP
rs1039172008 268 dbSNP
rs944979752 269 dbSNP
rs192905540 273 dbSNP
rs912293883 279 dbSNP
rs1403681748 282 dbSNP
rs1311576937 283 dbSNP
rs1393857798 283 dbSNP
rs986502785 294 dbSNP
rs945685993 297 dbSNP
rs953533348 300 dbSNP
rs1293285378 319 dbSNP
rs1306173367 320 dbSNP
rs138495281 324 dbSNP
rs565334248 325 dbSNP
rs957282236 327 dbSNP
rs1208840272 330 dbSNP
rs1292936493 331 dbSNP
rs1034626037 340 dbSNP
rs1413145560 345 dbSNP
rs1488592975 346 dbSNP
rs1030653370 347 dbSNP
rs1260732988 350 dbSNP
rs979942513 385 dbSNP
rs1176328522 400 dbSNP
rs1379065414 401 dbSNP
rs1464054117 404 dbSNP
rs970644553 413 dbSNP
rs578159864 414 dbSNP
rs1461972062 417 dbSNP
rs1353280378 418 dbSNP
rs1023521072 428 dbSNP
rs540393301 428 dbSNP
rs1302177165 443 dbSNP
rs1333055206 444 dbSNP
rs1232126314 449 dbSNP
rs1279731372 456 dbSNP
rs1167439336 460 dbSNP
rs1354558289 461 dbSNP
rs1012494518 463 dbSNP
rs1258959781 473 dbSNP
rs1024338004 497 dbSNP
rs1191569221 501 dbSNP
rs1268937021 504 dbSNP
rs372776788 512 dbSNP
rs888281673 514 dbSNP
rs1380344871 520 dbSNP
rs1421065443 526 dbSNP
rs1424786399 529 dbSNP
rs1343965304 531 dbSNP
rs755949807 533 dbSNP
rs1417530020 537 dbSNP
rs1186841950 546 dbSNP
rs753076487 549 dbSNP
rs886447068 550 dbSNP
rs1377737951 553 dbSNP
rs1242478303 561 dbSNP
rs1304707251 575 dbSNP
rs1195888572 579 dbSNP
rs1316273215 584 dbSNP
rs1479988566 586 dbSNP
rs1249578021 600 dbSNP
rs760486317 613 dbSNP
rs1467002359 618 dbSNP
rs1027634307 619 dbSNP
rs1322161067 626 dbSNP
rs535471756 627 dbSNP
rs1231764130 628 dbSNP
rs1352552116 637 dbSNP
rs767823004 641 dbSNP
rs369047181 644 dbSNP
rs1289156474 651 dbSNP
rs1390893592 654 dbSNP
rs1166169216 661 dbSNP
rs912150056 665 dbSNP
rs1371219623 668 dbSNP
rs1460264936 669 dbSNP
rs188635279 674 dbSNP
rs932175937 680 dbSNP
rs915399185 682 dbSNP
rs1296555073 697 dbSNP
rs556498475 704 dbSNP
rs1458845906 707 dbSNP
rs1372760106 711 dbSNP
rs989657822 714 dbSNP
rs956460183 716 dbSNP
rs900738515 718 dbSNP
rs529754860 719 dbSNP
rs1039632644 722 dbSNP
rs3827739 734 dbSNP
rs1163215982 742 dbSNP
rs1258231257 746 dbSNP
rs981778968 758 dbSNP
rs1413722089 762 dbSNP
rs116066291 764 dbSNP
rs1024010746 775 dbSNP
rs1483311745 777 dbSNP
rs1420727861 781 dbSNP
rs990741985 788 dbSNP
rs1474397552 789 dbSNP
rs952678532 789 dbSNP
rs1424554886 790 dbSNP
rs1411845492 800 dbSNP
rs1050838406 804 dbSNP
rs945739965 809 dbSNP
rs1168653922 823 dbSNP
rs555932658 838 dbSNP
rs1026839894 839 dbSNP
rs994379017 841 dbSNP
rs1247782483 850 dbSNP
rs145793174 851 dbSNP
rs1353492771 861 dbSNP
rs1413902782 867 dbSNP
rs566918392 877 dbSNP
rs1319787812 891 dbSNP
rs1384753098 909 dbSNP
rs1272383120 921 dbSNP
rs1369229525 924 dbSNP
rs1491170090 933 dbSNP
rs1014924045 934 dbSNP
rs1312246537 936 dbSNP
rs935940827 939 dbSNP
rs890448298 942 dbSNP
rs1261557743 946 dbSNP
rs551706895 948 dbSNP
rs533085014 960 dbSNP
rs184050409 968 dbSNP
rs1053969462 969 dbSNP
rs935450728 969 dbSNP
rs554580701 970 dbSNP
rs1370887883 972 dbSNP
rs917043866 973 dbSNP
rs1373502630 975 dbSNP
rs1433999242 978 dbSNP
rs1298770114 988 dbSNP
rs1428448678 988 dbSNP
rs200301088 988 dbSNP
rs1324390494 1001 dbSNP
rs1367870160 1007 dbSNP
rs550522636 1008 dbSNP
rs981852570 1017 dbSNP
rs1277602385 1023 dbSNP
rs983521076 1031 dbSNP
rs1437766726 1048 dbSNP
rs17032891 1049 dbSNP
rs1287438241 1057 dbSNP
rs759166447 1059 dbSNP
rs994828599 1063 dbSNP
rs1452571413 1065 dbSNP
rs1361634825 1068 dbSNP
rs965370423 1079 dbSNP
rs1017846137 1084 dbSNP
rs1393309420 1088 dbSNP
rs113571824 1094 dbSNP
rs890630043 1095 dbSNP
rs1398668021 1098 dbSNP
rs1317414097 1099 dbSNP
rs1350059616 1103 dbSNP
rs1042556564 1106 dbSNP
rs1010018876 1107 dbSNP
rs891526080 1109 dbSNP
rs1054569517 1113 dbSNP
rs539978102 1115 dbSNP
rs528167909 1120 dbSNP
rs1008923078 1121 dbSNP
rs35627034 1121 dbSNP
rs926919853 1134 dbSNP
rs764746144 1137 dbSNP
rs1204816595 1143 dbSNP
rs1044294538 1152 dbSNP
rs1251430592 1162 dbSNP
rs773824473 1168 dbSNP
rs563925961 1170 dbSNP
rs1365424292 1172 dbSNP
rs1257891276 1185 dbSNP
rs1468555887 1192 dbSNP
rs1029012476 1193 dbSNP
rs528627013 1216 dbSNP
rs917096196 1218 dbSNP
rs1462872294 1228 dbSNP
rs578205144 1243 dbSNP
rs894063863 1252 dbSNP
rs1446833656 1257 dbSNP
rs1347194346 1262 dbSNP
rs1054405388 1263 dbSNP
rs756461218 1263 dbSNP
rs950824848 1272 dbSNP
rs1237484224 1273 dbSNP
rs935522626 1274 dbSNP
rs1335888406 1293 dbSNP
rs920685666 1294 dbSNP
rs973844901 1296 dbSNP
rs371657207 1302 dbSNP
rs1046206341 1304 dbSNP
rs1468227476 1311 dbSNP
rs146805071 1312 dbSNP
rs949136075 1312 dbSNP
rs192417689 1318 dbSNP
rs1237999799 1320 dbSNP
rs1476028237 1321 dbSNP
rs1162568283 1339 dbSNP
rs1318074620 1351 dbSNP
rs1381363235 1354 dbSNP
rs1169333456 1361 dbSNP
rs11588393 1363 dbSNP
rs1382343961 1369 dbSNP
rs1304151484 1389 dbSNP
rs1393683052 1393 dbSNP
rs1390371189 1395 dbSNP
rs1328701367 1405 dbSNP
rs930936058 1415 dbSNP
rs1416963280 1425 dbSNP
rs574325706 1429 dbSNP
rs1434829660 1440 dbSNP
rs1393902164 1446 dbSNP
rs1171737212 1449 dbSNP
rs1337466333 1464 dbSNP
rs1195307856 1472 dbSNP
rs1258091355 1495 dbSNP
rs1486625309 1495 dbSNP
rs796131836 1495 dbSNP
rs954913461 1497 dbSNP
rs1373500663 1504 dbSNP
rs1192182757 1506 dbSNP
rs1445007735 1509 dbSNP
rs555995821 1511 dbSNP
rs1173636439 1517 dbSNP
rs1194853641 1519 dbSNP
rs1021157371 1537 dbSNP
rs773724687 1538 dbSNP
rs1211808232 1540 dbSNP
rs1376541345 1543 dbSNP
rs891573924 1547 dbSNP
rs961222955 1547 dbSNP
rs769987720 1555 dbSNP
rs1054220199 1569 dbSNP
rs534291715 1570 dbSNP
rs905547902 1573 dbSNP
rs1044014088 1581 dbSNP
rs1029457456 1588 dbSNP
rs566931816 1592 dbSNP
rs1270070439 1597 dbSNP
rs1350201529 1600 dbSNP
rs1225707521 1610 dbSNP
rs1208639489 1619 dbSNP
rs1342592292 1621 dbSNP
rs1279597810 1623 dbSNP
rs557882961 1629 dbSNP
rs1206675257 1634 dbSNP
rs539791982 1637 dbSNP
rs1047592406 1638 dbSNP
rs1199188331 1641 dbSNP
rs569134439 1645 dbSNP
rs76894702 1648 dbSNP
rs973515166 1654 dbSNP
rs902745370 1658 dbSNP
rs1310537605 1659 dbSNP
rs1046616390 1661 dbSNP
rs1013729331 1663 dbSNP
rs1167221903 1673 dbSNP
rs894899762 1684 dbSNP
rs879823734 1686 dbSNP
rs1055282051 1689 dbSNP
rs1369955754 1692 dbSNP
rs1373276252 1699 dbSNP
rs1232193335 1700 dbSNP
rs1188972590 1701 dbSNP
rs1475002948 1703 dbSNP
rs1317476653 1713 dbSNP
rs931029579 1723 dbSNP
rs71664865 1731 dbSNP
rs910569005 1732 dbSNP
rs919573374 1741 dbSNP
rs1036933301 1754 dbSNP
rs1431678306 1758 dbSNP
rs763701337 1760 dbSNP
rs987451846 1769 dbSNP
rs1438405083 1774 dbSNP
rs868480617 1777 dbSNP
rs954982159 1778 dbSNP
rs1021209828 1786 dbSNP
rs922078626 1790 dbSNP
rs1358959682 1792 dbSNP
rs1326765821 1797 dbSNP
rs187647151 1813 dbSNP
rs1438749132 1821 dbSNP
rs567959935 1823 dbSNP
rs760365677 1828 dbSNP
rs1374207367 1830 dbSNP
rs1032364363 1834 dbSNP
rs1304870075 1839 dbSNP
rs1032901912 1843 dbSNP
rs1290994511 1852 dbSNP
rs140922125 1853 dbSNP
rs1335784780 1856 dbSNP
rs1328158735 1861 dbSNP
rs1332253484 1866 dbSNP
rs151041223 1868 dbSNP
rs1392700415 1869 dbSNP
rs1022607869 1880 dbSNP
rs1481368944 1893 dbSNP
rs1179453342 1910 dbSNP
rs564182857 1911 dbSNP
rs1415964959 1915 dbSNP
rs895770101 1915 dbSNP
rs1420227719 1920 dbSNP
rs182259877 1934 dbSNP
rs1164529849 1951 dbSNP
rs1013794390 1953 dbSNP
rs530563296 1967 dbSNP
rs189563788 1968 dbSNP
rs1372563826 1971 dbSNP
rs1415118821 1976 dbSNP
rs1037909654 1986 dbSNP
rs1353374455 1992 dbSNP
rs1254083768 2003 dbSNP
rs1213474250 2009 dbSNP
rs1333060144 2016 dbSNP
rs1250079875 2026 dbSNP
rs898226301 2040 dbSNP
rs943495519 2046 dbSNP
rs1270910803 2047 dbSNP
rs910637689 2054 dbSNP
rs1189327433 2058 dbSNP
rs1036669040 2064 dbSNP
rs987504342 2067 dbSNP
rs1474470497 2068 dbSNP
rs939654521 2070 dbSNP
rs1225093772 2089 dbSNP
rs1350815099 2092 dbSNP
rs776917514 2094 dbSNP
rs544969970 2095 dbSNP
rs531598934 2096 dbSNP
rs1050965608 2102 dbSNP
rs932534201 2106 dbSNP
rs1440010096 2109 dbSNP
rs921081241 2122 dbSNP
rs1373123110 2132 dbSNP
rs186364801 2144 dbSNP
rs1439939103 2153 dbSNP
rs1270342342 2154 dbSNP
rs76205753 2154 dbSNP
rs925325939 2169 dbSNP
rs988430477 2173 dbSNP
rs958504836 2182 dbSNP
rs866398510 2192 dbSNP
rs1212223818 2194 dbSNP
rs1283158328 2207 dbSNP
rs981327874 2211 dbSNP
rs969870726 2212 dbSNP
rs562276991 2225 dbSNP
rs1209862649 2226 dbSNP
rs1242867090 2226 dbSNP
rs1476500548 2228 dbSNP
rs552925194 2237 dbSNP
rs796223209 2238 dbSNP
rs1025265932 2239 dbSNP
rs1454806793 2239 dbSNP
rs1373558422 2244 dbSNP
rs1407430845 2247 dbSNP
rs1013924441 2251 dbSNP
rs992808177 2254 dbSNP
rs1346802061 2258 dbSNP
rs1428182177 2272 dbSNP
rs1319556564 2276 dbSNP
rs959590563 2287 dbSNP
rs1235871416 2299 dbSNP
rs1306188404 2302 dbSNP
rs1346369755 2309 dbSNP
rs1219206786 2313 dbSNP
rs895487883 2316 dbSNP
rs1025912563 2318 dbSNP
rs555932272 2333 dbSNP
rs995659595 2337 dbSNP
rs1247653673 2338 dbSNP
rs1468915717 2353 dbSNP
rs1479015780 2355 dbSNP
rs1254179166 2362 dbSNP
rs1393144621 2368 dbSNP
rs1193514768 2375 dbSNP
rs1159120142 2377 dbSNP
rs898257264 2398 dbSNP
rs899064268 2407 dbSNP
rs1319402590 2414 dbSNP
rs1015257692 2418 dbSNP
rs1037580096 2420 dbSNP
rs943190062 2421 dbSNP
rs79781957 2430 dbSNP
rs1323283932 2432 dbSNP
rs183271658 2433 dbSNP
rs890782807 2436 dbSNP
rs1280701981 2441 dbSNP
rs1353213853 2446 dbSNP
rs538003155 2447 dbSNP
rs1447205281 2448 dbSNP
rs1283054004 2449 dbSNP
rs191750026 2454 dbSNP
rs1251188821 2462 dbSNP
rs1451178264 2476 dbSNP
rs575632403 2477 dbSNP
rs1182424602 2489 dbSNP
rs913919151 2500 dbSNP
rs556929893 2508 dbSNP
rs1304101364 2509 dbSNP
rs1234545164 2513 dbSNP
rs1054706304 2516 dbSNP
rs1158187732 2518 dbSNP
rs1418369080 2521 dbSNP
rs535362596 2523 dbSNP
rs1255797601 2530 dbSNP
rs1162433587 2531 dbSNP
rs935782237 2533 dbSNP
rs1410052559 2536 dbSNP
rs1330059597 2540 dbSNP
rs1338077341 2547 dbSNP
rs1052854738 2553 dbSNP
rs567972201 2562 dbSNP
rs1356552593 2566 dbSNP
rs925521336 2569 dbSNP
rs1263961932 2571 dbSNP
rs774173063 2572 dbSNP
rs945388963 2575 dbSNP
rs1196461888 2576 dbSNP
rs1431819986 2587 dbSNP
rs980994805 2588 dbSNP
rs1436032678 2602 dbSNP
rs917905688 2606 dbSNP
rs1344845358 2609 dbSNP
rs1476097825 2613 dbSNP
rs1185269778 2620 dbSNP
rs1316409227 2622 dbSNP
rs969534871 2630 dbSNP
rs1367531555 2632 dbSNP
rs918044445 2636 dbSNP
rs1462013382 2644 dbSNP
rs996159067 2649 dbSNP
rs1436692808 2651 dbSNP
rs959753527 2674 dbSNP
rs186905937 2676 dbSNP
rs142832259 2679 dbSNP
rs1026008470 2681 dbSNP
rs974648998 2682 dbSNP
rs993552526 2685 dbSNP
rs148476753 2687 dbSNP
rs1015329792 2688 dbSNP
rs963360579 2689 dbSNP
rs1003904309 2697 dbSNP
rs1280972300 2703 dbSNP
rs1187488983 2704 dbSNP
rs1475255138 2717 dbSNP
rs1016603758 2722 dbSNP
rs1428720713 2724 dbSNP
rs1241192635 2741 dbSNP
rs1194935040 2745 dbSNP
rs749177763 2746 dbSNP
rs1448415669 2762 dbSNP
rs1168449473 2767 dbSNP
rs1396217836 2770 dbSNP
rs888972095 2780 dbSNP
rs1301483960 2782 dbSNP
rs1280373293 2788 dbSNP
rs1210156210 2791 dbSNP
rs1345621238 2795 dbSNP
rs147442849 2798 dbSNP
rs1214945822 2803 dbSNP
rs1227767942 2804 dbSNP
rs1304012055 2828 dbSNP
rs550438037 2837 dbSNP
rs539589530 2838 dbSNP
rs530519393 2840 dbSNP
rs1255159982 2841 dbSNP
rs182226803 2846 dbSNP
rs935855460 2857 dbSNP
rs1245832849 2869 dbSNP
rs144396057 2884 dbSNP
rs1193755096 2888 dbSNP
rs903006899 2893 dbSNP
rs1455949444 2894 dbSNP
rs1174655386 2904 dbSNP
rs1377411307 2906 dbSNP
rs1454641960 2913 dbSNP
rs1042520667 2918 dbSNP
rs1312339587 2920 dbSNP
rs189545813 2922 dbSNP
rs1386763945 2925 dbSNP
rs777854038 2926 dbSNP
rs376631018 2936 dbSNP
rs570554673 2939 dbSNP
rs1373334894 2940 dbSNP
rs1385006234 2944 dbSNP
rs1300581130 2953 dbSNP
rs936662731 2958 dbSNP
rs1240925958 2970 dbSNP
rs925275493 2972 dbSNP
rs1265808166 2977 dbSNP
rs186320898 2978 dbSNP
rs1328075125 2980 dbSNP
rs1213984144 2990 dbSNP
rs1254302083 2992 dbSNP
rs1056875001 3000 dbSNP
rs562339684 3001 dbSNP
rs1045728892 3002 dbSNP
rs1267275887 3006 dbSNP
rs1420006644 3008 dbSNP
rs937987223 3010 dbSNP
rs771054075 3020 dbSNP
rs1456881049 3024 dbSNP
rs1166006137 3033 dbSNP
rs1409778962 3035 dbSNP
rs1456471874 3037 dbSNP
rs974341600 3038 dbSNP
rs140513416 3050 dbSNP
rs908695422 3055 dbSNP
rs1286205295 3056 dbSNP
rs1349691296 3058 dbSNP
rs1274678484 3064 dbSNP
rs982887920 3064 dbSNP
rs1319330735 3067 dbSNP
rs1325321880 3068 dbSNP
rs1475978599 3069 dbSNP
rs552219267 3070 dbSNP
rs1029377028 3077 dbSNP
rs763054890 3083 dbSNP
rs959805764 3083 dbSNP
rs573418155 3085 dbSNP
rs996956947 3087 dbSNP
rs1205073058 3089 dbSNP
rs971805986 3096 dbSNP
rs963376567 3102 dbSNP
rs1015906235 3104 dbSNP
rs1007494120 3111 dbSNP
rs1306753547 3118 dbSNP
rs1270617864 3119 dbSNP
rs752520436 3120 dbSNP
rs1030192009 3121 dbSNP
rs1164201310 3123 dbSNP
rs997344995 3131 dbSNP
rs1306178816 3133 dbSNP
rs1369655267 3134 dbSNP
rs892587816 3135 dbSNP
rs1052959306 3140 dbSNP
rs1376544101 3141 dbSNP
rs1000919358 3145 dbSNP
rs1227430996 3157 dbSNP
rs903872125 3163 dbSNP
rs1045045629 3164 dbSNP
rs1308813788 3167 dbSNP
rs948336820 3169 dbSNP
rs570911877 3171 dbSNP
rs1482896706 3172 dbSNP
rs896724691 3173 dbSNP
rs1056596942 3174 dbSNP
rs564512738 3179 dbSNP
rs1167528951 3208 dbSNP
rs749374448 3219 dbSNP
rs778041049 3223 dbSNP
rs546322380 3229 dbSNP
rs1166562896 3230 dbSNP
rs941759149 3230 dbSNP
rs780894922 3231 dbSNP
rs1435049967 3233 dbSNP
rs1335910120 3238 dbSNP
rs908899299 3251 dbSNP
rs1357250327 3254 dbSNP
rs1421566443 3255 dbSNP
rs1252019711 3257 dbSNP
rs985773142 3257 dbSNP
rs754623266 3259 dbSNP
rs879748458 3259 dbSNP
rs1030247811 3260 dbSNP
rs1296000722 3265 dbSNP
rs1342108652 3274 dbSNP
rs975965873 3289 dbSNP
rs982917435 3290 dbSNP
rs1281129501 3300 dbSNP
rs1236230215 3304 dbSNP
rs1215340911 3306 dbSNP
rs1209665175 3313 dbSNP
rs956750539 3317 dbSNP
rs955566308 3320 dbSNP
rs1186779662 3326 dbSNP
rs1247544784 3332 dbSNP
rs922381651 3340 dbSNP
rs1272815966 3352 dbSNP
rs575600364 3362 dbSNP
rs975179389 3368 dbSNP
rs1422781714 3370 dbSNP
rs116751899 3371 dbSNP
rs1159298337 3373 dbSNP
rs535422555 3374 dbSNP
rs1032697652 3376 dbSNP
rs113760844 3390 dbSNP
rs574472393 3393 dbSNP
rs751238651 3399 dbSNP
rs765820762 3400 dbSNP
rs1391377154 3404 dbSNP
rs1437803200 3426 dbSNP
rs1277179079 3447 dbSNP
rs552885952 3451 dbSNP
rs1020172973 3464 dbSNP
rs1371826460 3465 dbSNP
rs1328432027 3471 dbSNP
rs1442137855 3477 dbSNP
rs1012200311 3484 dbSNP
rs114843677 3492 dbSNP
rs1473504920 3507 dbSNP
rs570673489 3513 dbSNP
rs1469008180 3515 dbSNP
rs1056978569 3522 dbSNP
rs180905383 3528 dbSNP
rs905250754 3529 dbSNP
rs1456033802 3535 dbSNP
rs1455289414 3537 dbSNP
rs372528860 3538 dbSNP
rs1394564169 3542 dbSNP
rs542758490 3557 dbSNP
rs569617623 3562 dbSNP
rs1329877005 3569 dbSNP
rs1436459254 3571 dbSNP
rs1319671019 3580 dbSNP
rs887401533 3580 dbSNP
rs548229723 3585 dbSNP
rs1468790681 3586 dbSNP
rs879856783 3592 dbSNP
rs1208351886 3602 dbSNP
rs1335472870 3608 dbSNP
rs934184885 3613 dbSNP
rs529740963 3618 dbSNP
rs559374916 3625 dbSNP
rs547357994 3630 dbSNP
rs528775983 3631 dbSNP
rs1261470125 3634 dbSNP
rs941797457 3638 dbSNP
rs1205189983 3646 dbSNP
rs1253700780 3657 dbSNP
rs533663283 3667 dbSNP
rs1315161013 3671 dbSNP
rs985825382 3675 dbSNP
rs1473465135 3679 dbSNP
rs925659540 3681 dbSNP
rs978426126 3684 dbSNP
rs1370771801 3686 dbSNP
rs566459032 3692 dbSNP
rs564702617 3695 dbSNP
rs967032557 3701 dbSNP
rs1020247503 3705 dbSNP
rs1287924014 3711 dbSNP
rs931645786 3717 dbSNP
rs1247324361 3718 dbSNP
rs546039488 3725 dbSNP
rs1355816411 3730 dbSNP
rs750003891 3735 dbSNP
rs1034202141 3737 dbSNP
rs1481913178 3740 dbSNP
rs1204204399 3743 dbSNP
rs531048052 3745 dbSNP
rs368639715 3746 dbSNP
rs1258021181 3747 dbSNP
rs956622747 3758 dbSNP
rs1185045921 3765 dbSNP
rs1289047463 3780 dbSNP
rs1031282796 3783 dbSNP
rs1452460839 3793 dbSNP
rs867179190 3794 dbSNP
rs979271554 3799 dbSNP
rs1358051444 3800 dbSNP
rs905282628 3803 dbSNP
rs563471638 3804 dbSNP
rs1454655180 3810 dbSNP
rs541906487 3815 dbSNP
rs968577166 3817 dbSNP
rs1005544797 3818 dbSNP
rs1023668383 3822 dbSNP
rs1299683625 3824 dbSNP
rs1339946271 3838 dbSNP
rs1227621710 3839 dbSNP
rs574535798 3840 dbSNP
rs41310114 3841 dbSNP
rs1047326938 3853 dbSNP
rs541322517 3857 dbSNP
rs1189969000 3862 dbSNP
rs397710294 3864 dbSNP
rs60762979 3864 dbSNP
rs901393172 3864 dbSNP
rs994855188 3864 dbSNP
rs897385391 3865 dbSNP
rs1262730054 3870 dbSNP
rs1170972236 3871 dbSNP
rs1401808123 3885 dbSNP
rs781552833 3897 dbSNP
rs1322602406 3899 dbSNP
rs147153581 3906 dbSNP
rs1434263774 3918 dbSNP
rs1282527000 3928 dbSNP
rs1038980446 3930 dbSNP
rs558734782 3937 dbSNP
rs1347809007 3938 dbSNP
rs1210257311 3939 dbSNP
rs1265696873 3940 dbSNP
rs1464098973 3944 dbSNP
rs889921597 3952 dbSNP
rs1050178141 3957 dbSNP
rs1435239552 3959 dbSNP
rs536818273 3960 dbSNP
rs188095089 3965 dbSNP
rs1327344646 3970 dbSNP
rs992878435 3973 dbSNP
rs1381278619 3974 dbSNP
rs1337868956 3978 dbSNP
rs1314159841 3980 dbSNP
rs149489425 3983 dbSNP
rs1034644253 3984 dbSNP
rs1170697042 3986 dbSNP
rs536343906 3987 dbSNP
rs1392818944 3989 dbSNP
rs1463350918 3993 dbSNP
rs935269315 4008 dbSNP
rs563213637 4009 dbSNP
rs565726361 4013 dbSNP
rs1192798061 4015 dbSNP
rs963175399 4019 dbSNP
rs4839390 4020 dbSNP
rs1327792426 4022 dbSNP
rs1221701075 4036 dbSNP
rs1266499502 4038 dbSNP
rs1489734962 4042 dbSNP
rs376906495 4047 dbSNP
rs777024540 4049 dbSNP
rs547029039 4056 dbSNP
rs1268607928 4060 dbSNP
rs1473130953 4063 dbSNP
rs979708495 4070 dbSNP
rs1418525302 4073 dbSNP
rs1485363562 4074 dbSNP
rs967909617 4075 dbSNP
rs887169461 4082 dbSNP
rs1340552560 4083 dbSNP
rs1292931567 4085 dbSNP
rs1370882237 4092 dbSNP
rs528789159 4097 dbSNP
rs752019680 4098 dbSNP
rs1349521480 4101 dbSNP
rs571021379 4102 dbSNP
rs1314243557 4103 dbSNP
rs1319461108 4110 dbSNP
rs998560243 4134 dbSNP
rs1035006341 4135 dbSNP
rs1250122776 4139 dbSNP
rs1480413902 4149 dbSNP
rs1294671264 4156 dbSNP
rs1416041665 4171 dbSNP
rs1422153060 4173 dbSNP
rs1414898121 4183 dbSNP
rs994177532 4184 dbSNP
rs961963755 4186 dbSNP
rs776574410 4188 dbSNP
rs901428753 4189 dbSNP
rs552757369 4191 dbSNP
rs1040356645 4207 dbSNP
rs1007092475 4209 dbSNP
rs768933272 4211 dbSNP
rs1304240455 4218 dbSNP
rs904678599 4222 dbSNP
rs531048929 4234 dbSNP
rs1042850450 4252 dbSNP
rs945795607 4267 dbSNP
rs912954429 4268 dbSNP
rs1307343559 4285 dbSNP
rs1056805799 4289 dbSNP
rs1167092604 4290 dbSNP
rs1482297142 4290 dbSNP
rs1463804885 4296 dbSNP
rs1017191702 4312 dbSNP
rs1006180807 4327 dbSNP
rs1186655883 4337 dbSNP
rs1418454002 4344 dbSNP
rs1165867686 4350 dbSNP
rs927269148 4351 dbSNP
rs980414526 4352 dbSNP
rs1177731280 4355 dbSNP
rs963208913 4356 dbSNP
rs1469012129 4358 dbSNP
rs1184689782 4377 dbSNP
rs1438890371 4383 dbSNP
rs1250354433 4385 dbSNP
rs1437886831 4398 dbSNP
rs1197146157 4402 dbSNP
rs1361619625 4410 dbSNP
rs1220212698 4414 dbSNP
rs1337351926 4416 dbSNP
rs563533607 4420 dbSNP
rs1274684983 4423 dbSNP
rs1203323253 4431 dbSNP
rs553493494 4450 dbSNP
rs1408651362 4452 dbSNP
rs1466317427 4458 dbSNP
rs1233497863 4460 dbSNP
rs983220370 4471 dbSNP
rs1049895418 4473 dbSNP
rs995957426 4487 dbSNP
rs998237051 4488 dbSNP
rs1422845579 4494 dbSNP
rs965751521 4496 dbSNP
rs137868425 4497 dbSNP
rs1390131085 4500 dbSNP
rs1040484251 4505 dbSNP
rs1043258700 4506 dbSNP
rs1316802957 4506 dbSNP
rs935005830 4506 dbSNP
rs1344097651 4513 dbSNP
rs1223070156 4518 dbSNP
rs923570129 4520 dbSNP
rs530089380 4521 dbSNP
rs1206924153 4523 dbSNP
rs760930710 4524 dbSNP
rs559332233 4529 dbSNP
rs1057277784 4530 dbSNP
rs1461118897 4532 dbSNP
rs938391474 4534 dbSNP
rs1244753411 4541 dbSNP
rs1490129407 4544 dbSNP
rs1182369943 4546 dbSNP
rs946595962 4549 dbSNP
rs541033927 4553 dbSNP
rs1471299026 4555 dbSNP
rs775867454 4556 dbSNP
rs1044045099 4557 dbSNP
rs1413943491 4563 dbSNP
rs916442832 4565 dbSNP
rs1326122915 4567 dbSNP
rs1470513243 4569 dbSNP
rs990594329 4576 dbSNP
rs1363756437 4580 dbSNP
rs1404752268 4582 dbSNP
rs960814820 4593 dbSNP
rs1352538031 4598 dbSNP
rs941965670 4605 dbSNP
rs928043486 4615 dbSNP
rs1177258610 4626 dbSNP
rs150714804 4638 dbSNP
rs983251680 4640 dbSNP
rs1253985181 4643 dbSNP
rs1287652007 4645 dbSNP
rs961402615 4649 dbSNP
rs950551680 4652 dbSNP
rs1214004774 4661 dbSNP
rs1205636651 4663 dbSNP
rs1253774781 4666 dbSNP
rs1450671575 4669 dbSNP
rs1481853175 4674 dbSNP
rs1180731752 4682 dbSNP
rs1287233134 4685 dbSNP
rs1237539196 4688 dbSNP
rs1224999659 4722 dbSNP
rs1473495110 4724 dbSNP
rs1165463599 4730 dbSNP
rs1383944901 4731 dbSNP
rs558605372 4738 dbSNP
rs543685429 4742 dbSNP
rs918712656 4744 dbSNP
rs977227217 4745 dbSNP
rs1308511495 4748 dbSNP
rs1389874038 4753 dbSNP
rs1328448254 4754 dbSNP
rs1017327087 4756 dbSNP
rs1341072126 4758 dbSNP
rs1450335797 4760 dbSNP
rs1237833596 4761 dbSNP
rs141165067 4762 dbSNP
rs1229109783 4764 dbSNP
rs1303863952 4774 dbSNP
rs954266541 4779 dbSNP
rs1276510082 4780 dbSNP
rs1028520770 4785 dbSNP
rs1194806277 4786 dbSNP
rs554800782 4786 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' guccgugccCUCGAGUCCACu 5'
                   || :||||||| 
Target 5' -----uuauGACUUCAGGUG- 3'
1 - 15
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_001102396 | 3UTR | CACCACCAUGCACAGCUAAUUUUUGUGUUUUUAGUAGAUGGGGUUUCUCCAUGUUGGCCAGGCUGGUCUCGAACUUAUGACUUCAGGUGAUCCGCCCGCCUUGGCCUCCCAAAGUGCUGGGAUUAUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_001102396 | 3UTR | CACAGCUAAUUUUUGUGUUUUUAGUAGAUGGGGUUUCUCCAUGUUGGCCAGGCUGGUCUCGAACUUAUGACUUCAGGUGAUCCGCCCGCCUUGGCCUCCCAAAGUGCUGGGAUUAUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_025073 | 3UTR | CAUGCACAGCUAAUUUUUGUGUUUUUAGUAGAUGGGGUUUCUCCAUGUUGGCCAGGCUGGUCUCGAACUUAUGACUUCAGGUGAUCCGCCCGCCUUGGCCUCCCAAAGUGCUGGGAUUAUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_001102396 | 3UTR | UGCACAGCUAAUUUUUGUGUUUUUAGUAGAUGGGGUUUCUCCAUGUUGGCCAGGCUGGUCUCGAACUUAUGACUUCAGGUGAUCCGCCCGCCUUGGCCUCCCAAAGUGCUGGGAUUAUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_025073 | 3UTR | GUUUUUAGUAGAUGGGGUUUCUCCAUGUUGGCCAGGCUGGUCUCGAACUUAUGACUUCAGGUGAUCCGCCCGCCUUGGCCUCCCAAAGUGCUGGGAUUAUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_001102396 | 3UTR | AGCUAAUUUUUGUGUUUUUAGUAGAUGGGGUUUCUCCAUGUUGGCCAGGCUGGUCUCGAACUUAUGACUUCAGGUGAUCCGCCCGCCUUGGCCUCCCAAAGUGCUGGGAUUAUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000369528.5 | 3UTR | UUAUGACUUCAGGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
THCA 0.272 0.28 0.679 0.05 7 Click to see details
THCA 0.272 0.28 0.679 0.05 7 Click to see details
THCA 0.272 0.28 0.679 0.05 7 Click to see details
THCA 0.272 0.28 0.679 0.05 7 Click to see details
THCA 0.272 0.28 0.679 0.05 7 Click to see details
THCA 0.272 0.28 0.679 0.05 7 Click to see details
102 hsa-miR-3622b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT076713 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT080212 PRKACB protein kinase cAMP-activated catalytic subunit beta 2 2
MIRT081398 GTPBP3 GTP binding protein 3, mitochondrial 2 2
MIRT107158 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT254071 BACH1 BTB domain and CNC homolog 1 2 2
MIRT409790 FOXO3 forkhead box O3 2 2
MIRT448679 MAPK9 mitogen-activated protein kinase 9 2 2
MIRT450206 ABHD15 abhydrolase domain containing 15 2 2
MIRT486621 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT489267 TTLL1 tubulin tyrosine ligase like 1 2 2
MIRT493117 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 4
MIRT494570 BAK1 BCL2 antagonist/killer 1 2 2
MIRT497395 RALY RALY heterogeneous nuclear ribonucleoprotein 2 2
MIRT504900 CCDC86 coiled-coil domain containing 86 2 2
MIRT505192 USP46 ubiquitin specific peptidase 46 2 4
MIRT506522 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 6
MIRT508162 ABCC5 ATP binding cassette subfamily C member 5 2 8
MIRT508545 PARVG parvin gamma 2 4
MIRT509850 BIRC5 baculoviral IAP repeat containing 5 2 6
MIRT510088 PPWD1 peptidylprolyl isomerase domain and WD repeat containing 1 2 8
MIRT512094 CRK CRK proto-oncogene, adaptor protein 2 4
MIRT515381 RPL7 ribosomal protein L7 2 2
MIRT519176 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT519964 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT522292 NKAP NFKB activating protein 2 2
MIRT523160 HMGB2 high mobility group box 2 2 4
MIRT525314 FANCA Fanconi anemia complementation group A 2 2
MIRT528194 PLEKHM2 pleckstrin homology and RUN domain containing M2 2 2
MIRT532885 ZNF451 zinc finger protein 451 2 2
MIRT538209 CYR61 cysteine rich angiogenic inducer 61 2 2
MIRT539497 ACTN4 actinin alpha 4 2 2
MIRT554600 RRAGC Ras related GTP binding C 2 2
MIRT562444 DCTN6 dynactin subunit 6 2 2
MIRT562748 AOC3 amine oxidase, copper containing 3 2 2
MIRT565798 SEC14L5 SEC14 like lipid binding 5 2 2
MIRT565838 SCML2 Scm polycomb group protein like 2 2 2
MIRT566072 RCC2 regulator of chromosome condensation 2 2 2
MIRT566104 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 2
MIRT572407 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT576198 Vsig2 V-set and immunoglobulin domain containing 2 2 2
MIRT576313 Acbd7 acyl-Coenzyme A binding domain containing 7 2 2
MIRT576651 Mill2 MHC I like leukocyte 2 1 1
MIRT576859 Socs6 suppressor of cytokine signaling 6 2 2
MIRT606819 BICD2 BICD cargo adaptor 2 2 2
MIRT610738 NUDT16 nudix hydrolase 16 2 4
MIRT614798 RORA RAR related orphan receptor A 2 2
MIRT619006 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1 2 2
MIRT619420 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT620405 MYO1H myosin IH 2 2
MIRT624869 ABHD13 abhydrolase domain containing 13 2 2
MIRT633527 ZFP30 ZFP30 zinc finger protein 2 2
MIRT633927 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT636611 CLIC5 chloride intracellular channel 5 2 2
MIRT640616 MIOX myo-inositol oxygenase 2 2
MIRT642605 C14orf180 chromosome 14 open reading frame 180 2 2
MIRT644624 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT655113 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT658976 DNAJB5 DnaJ heat shock protein family (Hsp40) member B5 2 4
MIRT661495 CHMP1B charged multivesicular body protein 1B 2 2
MIRT662996 TMEM59 transmembrane protein 59 2 2
MIRT663075 SFR1 SWI5 dependent homologous recombination repair protein 1 2 2
MIRT665405 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT666106 SSR1 signal sequence receptor subunit 1 2 2
MIRT669562 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT670070 ZNF783 zinc finger family member 783 2 2
MIRT671192 ZNF891 zinc finger protein 891 2 2
MIRT675361 KLHL26 kelch like family member 26 2 2
MIRT678857 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT679443 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT684163 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT684543 ZNF460 zinc finger protein 460 2 2
MIRT684674 SLC2A11 solute carrier family 2 member 11 2 2
MIRT684971 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT686006 NEK4 NIMA related kinase 4 2 2
MIRT687758 KIAA1328 KIAA1328 2 2
MIRT688961 ATXN3 ataxin 3 2 2
MIRT689409 UQCR11 ubiquinol-cytochrome c reductase, complex III subunit XI 2 2
MIRT690001 MMP17 matrix metallopeptidase 17 2 2
MIRT690165 ELP3 elongator acetyltransferase complex subunit 3 2 2
MIRT690202 C5orf45 MRN complex interacting protein 2 2
MIRT690477 ZNF33A zinc finger protein 33A 2 2
MIRT690566 MICA MHC class I polypeptide-related sequence A 2 2
MIRT692160 C10orf111 chromosome 10 open reading frame 111 2 2
MIRT693430 PLGLB2 plasminogen-like B2 2 2
MIRT693547 ZNF708 zinc finger protein 708 2 2
MIRT693697 PLGLB1 plasminogen-like B1 2 2
MIRT695006 HSPA6 heat shock protein family A (Hsp70) member 6 2 2
MIRT698525 TFRC transferrin receptor 2 2
MIRT699574 SIKE1 suppressor of IKBKE 1 2 2
MIRT703446 FYTTD1 forty-two-three domain containing 1 2 2
MIRT704397 CTSS cathepsin S 2 2
MIRT704485 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT709822 STPG1 sperm tail PG-rich repeat containing 1 2 2
MIRT710859 COQ7 coenzyme Q7, hydroxylase 2 2
MIRT711893 INSIG2 insulin induced gene 2 2 2
MIRT713796 CPLX2 complexin 2 2 2
MIRT718800 C1GALT1C1 C1GALT1 specific chaperone 1 2 2
MIRT719501 SEC24B SEC24 homolog B, COPII coat complex component 2 2
MIRT719722 PDE6B phosphodiesterase 6B 2 2
MIRT722204 URM1 ubiquitin related modifier 1 2 2
MIRT723523 CLPTM1L CLPTM1 like 2 2
MIRT725471 GRAP2 GRB2-related adaptor protein 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3622b-3p Platinum 23939 sensitive tissue
hsa-miR-3622b-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3622b-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-3622b-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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