pre-miRNA Information
pre-miRNA hsa-mir-3120   
Genomic Coordinates chr1: 172138808 - 172138888
Description Homo sapiens miR-3120 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3120-5p
Sequence 13| CCUGUCUGUGCCUGCUGUACA |33
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 19 1 + 172138838 26449202, 27587585 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN26637643 8 COSMIC
COSN31603497 11 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs750386761 8 dbSNP
rs760725207 9 dbSNP
rs766486759 10 dbSNP
rs754055278 12 dbSNP
rs755288536 19 dbSNP
rs754726014 21 dbSNP
Putative Targets

Gene Information
Gene Symbol RUFY2   
Synonyms RABIP4R, ZFYVE13
Description RUN and FYVE domain containing 2
Transcript NM_017987   
Other Transcripts NM_001042417   
Expression
Putative miRNA Targets on RUFY2
3'UTR of RUFY2
(miRNA target sites are highlighted)
>RUFY2|NM_017987|3'UTR
   1 GACTCCAGAACTAAATCCTTATGTATGAAATTACCTACAATGAATGTTATGATGTTGTATACAAAGGTAACCAGACAGCT
  81 CTCCTTAAGCGGCTTTCGGTCAGTATTTGGTACCAGTTTATCTTCTACATATTCAGCTCATGGAAATTACAAGTTATATA
 161 TTTCCTTCCCCATTGTTTTTCAAAATGTATTTTCAACAGAGCATGCTTAAAAATCATGTAACTCATTAAAAGGCCAGAGA
 241 GCAGAGCTAACACAACTTGCCTTATCTTGTAAAGGCCTTAAAAATAAGGCTTCAGATTGTTTTTTTCTTCTGAATTCTGT
 321 CAATTTGGTATTTGATGGTGCCTGCAGTTCTCTTAATGCACTTTAAAGCTTCACAGTTCTGAAACTGGAAACGCATAAAA
 401 CTTTTAAAATTATTAATATTCTAATTCAACAGATTTTCATTATCTTTGTAAGATTTCAACTATATTTATTTGCCCTTTCT
 481 TCTCCCCCTCTCCCTTTGCCTCTTGCATTAGACAGGGCCAATATTTTGTCCTACAAAATTTCCTCTTGGTCTCTTTAAAA
 561 ATCAGTTATTGTCGTGCTTGCTGAAGATTTTCAGCTACAGTGGATTAAATTAAAGGGGGCATTATTTGGCCTCGGCCTCT
 641 ACTTTTTTCCTTTTAATCTTGAAAGGAAGTTACATATAACCATCTTTCTTTTCCTGATTTATAAATCTTCCCATATGCTG
 721 TTTCATTAAATTGCTGTTTTTTTAAGGGGTGACTCAGACCCCAATTCAAAGATGAAAACACAAATCCTTCCCCAGAAAAA
 801 AAAGTATGTAATAGTAGGGGATGTTACAGGCTCCTTATAAAGGTCCTCTCCTCTAAGCATTAAAAGTGAGAAAAAAATCA
 881 GGACTTTGCTTTGGTAATGTATTAGAGTTCAGTTCAAAAAATTTTGTATTAACATTTTCATTGGAGTAAATTTTAGGAAG
 961 TATCACATTGTAGTGGCCTACCTGTATACATCCACAGTAAAATTTCACCATGTCCATTGAGCACCTCTATGCCAAGGGTG
1041 TTGAGATGATGAAATATACACTTGACCTATTTCTTTTTTTTTCGAGATGGAGTTTCACTCTTGTTGCCTAGGCTGGAGTG
1121 CAATGGCACGATCTCCACCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCGTGAG
1201 CCACAGCACCTGGCCAGTACACTTGACCTATTTCAAGCTGACTCAATGAACACTAATCCAAGTTATATTGCTTATGGCAT
1281 ACTAAGAATTTAACTTGTATAAATTACCTCTGAATAGTTACATAAACACTATCACCATTCAGTATCCTATTTTTTACATT
1361 AATTTTTAACCATGCACTTTAAGTTTGTGAGCCTATAAAAAATACATAGAAAATTTATGGATTAAGAGCATTATATTTAG
1441 TGGTTAATCCTAGGTACCTCCCTGCCTACAAAGGAGTTCTTATTAATACTGCAGGATCTTTTCTTCATGAATATATGCTT
1521 CCATGAAATTTAAATTTTTCTGAATAGCCTAAGTATGAAATGAATATTTTACTTGAAGATCTATTTTTTCCAAAACCCGT
1601 AAATTTCCAGTCAGCTTTTGAGGTGTCAGATGTGACACAGATTTCTAGATGGTCTTTCTTGAATACTGACAGAAATGTCC
1681 TCAAGAGAGGATTATATTCTTGAACCATTTTGTATTGATAGGTGGGATGGGCTAACATTTTTATGATTACTGAATAAACA
1761 AAAAATGAAATTTTCAAATATGCTTTTTTATTACTGTGCTTAGAACAAATTTTAAAATGTGACTTAAGTTGCTTAAATTC
1841 CAAGGCTAATTTCATTCAACAAACCATGATTTTGTCATCCTTTAAGTAAGTTTCTCACTTTTCAAAACTCATGTATCAAC
1921 ACTGACTGACTTGCTTTTTTTTTTTTTTTTTTTTTTTTTAGGCAGCTTTTATGACAGCAACTTGCTCCATGTAGTTTTGG
2001 CTTATTTAAAAACTATACTAACTTTGGATTTTTCTGTTACAAGACTTTTAACAATCTGTATTTCGTGATTGTGAACTCGT
2081 ATTCATTTTACTTTTCAAAAACAGACTTAACATACCATTCCCTCACCTAGCAGTACTACCACAATAATGCTATCATGGTG
2161 CCAGGGAATTACAATTGTAATTCTTCTAACCTATAATGTTTAAAAAATAAAATGTGAATTTTATGAACTAAATAAATATT
2241 TGGAAAATTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acAUGUCGUCCGU--GUCUGUCc 5'
            ||||  |||:|  ||||||| 
Target 5' taTACA-AAGGTAACCAGACAGc 3'
58 - 79 160.00 -15.90
2
miRNA  3' acAUGUCGUCCGU-GUCUGUCc 5'
            |:|  |  ||| :|||||| 
Target 5' ttTGCCTCTTGCATTAGACAGg 3'
495 - 516 135.00 -16.60
3
miRNA  3' acAUGUCGUCCGUGUCUGUCc 5'
            || |  |||| |||| || 
Target 5' atTAAA--AGGC-CAGAGAGc 3'
225 - 242 122.00 -12.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN1499040 31 COSMIC
COSN30483325 35 COSMIC
COSN31568860 43 COSMIC
COSN28192880 48 COSMIC
COSN28192914 52 COSMIC
COSN31575941 71 COSMIC
COSN30504223 91 COSMIC
COSN30110286 97 COSMIC
COSN16131816 103 COSMIC
COSN30503801 112 COSMIC
COSN31565899 115 COSMIC
COSN31582423 145 COSMIC
COSN26874830 235 COSMIC
COSN28646874 239 COSMIC
COSN6980721 295 COSMIC
COSN28645494 347 COSMIC
COSN10071864 448 COSMIC
COSN19297488 674 COSMIC
COSN5882269 1231 COSMIC
COSN19210148 1335 COSMIC
COSN26457996 1542 COSMIC
COSN5882268 1580 COSMIC
COSN22600290 1680 COSMIC
COSN5882267 1735 COSMIC
COSN20107215 1883 COSMIC
COSN20107211 1935 COSMIC
COSN20107213 1935 COSMIC
COSN10071863 1959 COSMIC
COSN27228155 1959 COSMIC
COSN27258231 1959 COSMIC
COSN26502121 2082 COSMIC
COSN31590585 2142 COSMIC
COSN31541507 2150 COSMIC
COSN25922674 2152 COSMIC
COSN16129041 2158 COSMIC
COSN6980720 2183 COSMIC
COSN10071862 2237 COSMIC
rs41278506 958 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs781018764 4 dbSNP
rs199943115 7 dbSNP
rs755012113 7 dbSNP
rs200960372 8 dbSNP
rs753797160 8 dbSNP
rs1197951380 10 dbSNP
rs1451962773 13 dbSNP
rs779999056 17 dbSNP
rs1214377957 19 dbSNP
rs757309186 20 dbSNP
rs377333410 22 dbSNP
rs950681804 23 dbSNP
rs954947817 24 dbSNP
rs200775738 25 dbSNP
rs1343191736 26 dbSNP
rs761049520 27 dbSNP
rs752955079 36 dbSNP
rs1333210459 37 dbSNP
rs768043377 39 dbSNP
rs1399966790 42 dbSNP
rs1200050079 45 dbSNP
rs759949787 46 dbSNP
rs1158778754 49 dbSNP
rs774752839 50 dbSNP
rs1237492948 52 dbSNP
rs1026691269 58 dbSNP
rs1288688426 59 dbSNP
rs997310639 60 dbSNP
rs1336503872 62 dbSNP
rs993508873 63 dbSNP
rs562366581 68 dbSNP
rs1402071871 71 dbSNP
rs899194524 72 dbSNP
rs1467506081 74 dbSNP
rs1329803631 76 dbSNP
rs1376642714 81 dbSNP
rs542180319 90 dbSNP
rs1002266196 91 dbSNP
rs905680704 92 dbSNP
rs1329367788 93 dbSNP
rs573363026 97 dbSNP
rs747407394 98 dbSNP
rs534515297 105 dbSNP
rs1442631304 106 dbSNP
rs1196517109 110 dbSNP
rs1257130664 120 dbSNP
rs998875028 127 dbSNP
rs1349145083 128 dbSNP
rs903406913 129 dbSNP
rs917171152 131 dbSNP
rs1432059178 135 dbSNP
rs1193834744 141 dbSNP
rs1425308403 142 dbSNP
rs148528989 149 dbSNP
rs540319708 151 dbSNP
rs778152114 157 dbSNP
rs1158453949 158 dbSNP
rs1458757002 167 dbSNP
rs577857689 168 dbSNP
rs978486637 171 dbSNP
rs937753719 179 dbSNP
rs1404410982 187 dbSNP
rs1298946550 189 dbSNP
rs557887742 201 dbSNP
rs908994885 204 dbSNP
rs758740494 208 dbSNP
rs537805011 213 dbSNP
rs950364166 217 dbSNP
rs919151240 218 dbSNP
rs1263606056 231 dbSNP
rs1469493975 232 dbSNP
rs3781568 239 dbSNP
rs555029706 240 dbSNP
rs1326521638 241 dbSNP
rs1026558033 242 dbSNP
rs1192421741 253 dbSNP
rs1017853779 256 dbSNP
rs1424730709 259 dbSNP
rs972754480 260 dbSNP
rs555609979 261 dbSNP
rs957651500 287 dbSNP
rs1016696662 296 dbSNP
rs1002215245 299 dbSNP
rs905289643 300 dbSNP
rs1438369018 302 dbSNP
rs767595376 303 dbSNP
rs1025054576 304 dbSNP
rs1288476541 305 dbSNP
rs1455688494 305 dbSNP
rs1033100676 306 dbSNP
rs1310241418 307 dbSNP
rs999240671 307 dbSNP
rs1391015657 308 dbSNP
rs1240737367 309 dbSNP
rs1350835509 310 dbSNP
rs1215311876 312 dbSNP
rs1237694586 319 dbSNP
rs1484065616 323 dbSNP
rs903207549 324 dbSNP
rs535414170 330 dbSNP
rs1254429746 343 dbSNP
rs1444418681 346 dbSNP
rs3781567 347 dbSNP
rs1014442797 357 dbSNP
rs546431364 359 dbSNP
rs1359829254 361 dbSNP
rs1423712547 362 dbSNP
rs1056358670 373 dbSNP
rs1301348634 386 dbSNP
rs941543727 387 dbSNP
rs533250700 392 dbSNP
rs1053026032 393 dbSNP
rs1374662303 395 dbSNP
rs188451511 395 dbSNP
rs1278647643 397 dbSNP
rs928926347 403 dbSNP
rs904162234 406 dbSNP
rs1207541664 408 dbSNP
rs1042754652 409 dbSNP
rs1255098309 413 dbSNP
rs918912453 414 dbSNP
rs1463155309 416 dbSNP
rs1240557520 417 dbSNP
rs943058110 420 dbSNP
rs1438319576 427 dbSNP
rs144567346 432 dbSNP
rs944599027 435 dbSNP
rs1215895286 444 dbSNP
rs987252368 448 dbSNP
rs1465943695 450 dbSNP
rs1333191755 459 dbSNP
rs550671224 462 dbSNP
rs1397870498 465 dbSNP
rs1441310333 472 dbSNP
rs569262361 475 dbSNP
rs1369067374 482 dbSNP
rs919442979 482 dbSNP
rs972316766 487 dbSNP
rs1348381784 493 dbSNP
rs1318224357 496 dbSNP
rs1200157440 498 dbSNP
rs986329758 500 dbSNP
rs1436459739 505 dbSNP
rs963979399 506 dbSNP
rs1479032181 507 dbSNP
rs1364369030 511 dbSNP
rs1189615145 516 dbSNP
rs1033484605 517 dbSNP
rs1289474056 523 dbSNP
rs530899988 526 dbSNP
rs1016232094 527 dbSNP
rs1447437070 536 dbSNP
rs550971662 539 dbSNP
rs967460621 543 dbSNP
rs755385389 549 dbSNP
rs1324087738 560 dbSNP
rs1351611873 563 dbSNP
rs1433653471 571 dbSNP
rs1301924539 573 dbSNP
rs561968388 574 dbSNP
rs753231550 583 dbSNP
rs1025003749 593 dbSNP
rs1337832148 604 dbSNP
rs141711159 615 dbSNP
rs532804240 615 dbSNP
rs895628900 616 dbSNP
rs888634361 617 dbSNP
rs1047706490 619 dbSNP
rs760732393 634 dbSNP
rs1435713988 637 dbSNP
rs1388187321 638 dbSNP
rs1390016473 648 dbSNP
rs1167101127 649 dbSNP
rs1421806627 655 dbSNP
rs1474956101 659 dbSNP
rs897613432 666 dbSNP
rs1040029858 667 dbSNP
rs1421227998 667 dbSNP
rs1186552953 672 dbSNP
rs944357594 674 dbSNP
rs910437730 676 dbSNP
rs1360549070 679 dbSNP
rs986080374 684 dbSNP
rs935947493 685 dbSNP
rs1325560668 692 dbSNP
rs535149982 692 dbSNP
rs1430445195 702 dbSNP
rs1213006355 706 dbSNP
rs998750709 715 dbSNP
rs904439265 716 dbSNP
rs1358918188 719 dbSNP
rs1177364 726 dbSNP
rs977267310 728 dbSNP
rs943007157 737 dbSNP
rs1218969233 741 dbSNP
rs1354482249 741 dbSNP
rs1273582758 744 dbSNP
rs1259892116 752 dbSNP
rs559983509 760 dbSNP
rs967426023 763 dbSNP
rs139981874 764 dbSNP
rs1238944486 765 dbSNP
rs1442567493 774 dbSNP
rs1182888119 783 dbSNP
rs1225931829 788 dbSNP
rs1380886974 791 dbSNP
rs992747700 792 dbSNP
rs1156369261 797 dbSNP
rs1383638002 800 dbSNP
rs1051492660 803 dbSNP
rs958750167 804 dbSNP
rs1296615900 806 dbSNP
rs1342590696 806 dbSNP
rs1227791917 807 dbSNP
rs1450984172 813 dbSNP
rs548096082 813 dbSNP
rs933082834 815 dbSNP
rs1378362309 818 dbSNP
rs1377147189 819 dbSNP
rs1005787813 823 dbSNP
rs1350083123 827 dbSNP
rs761695585 831 dbSNP
rs1281054124 834 dbSNP
rs1459788736 838 dbSNP
rs1025814993 842 dbSNP
rs1370497765 845 dbSNP
rs994346481 846 dbSNP
rs1306503594 854 dbSNP
rs1441405591 856 dbSNP
rs897539840 857 dbSNP
rs1355889184 878 dbSNP
rs1478083619 882 dbSNP
rs1173950404 887 dbSNP
rs972649747 888 dbSNP
rs1468549607 894 dbSNP
rs1336414802 895 dbSNP
rs1401483941 898 dbSNP
rs942252958 899 dbSNP
rs750463173 901 dbSNP
rs981019955 904 dbSNP
rs1410904946 905 dbSNP
rs1189463631 906 dbSNP
rs1234105666 924 dbSNP
rs1276826647 926 dbSNP
rs185311217 927 dbSNP
rs1251032286 928 dbSNP
rs1258393696 928 dbSNP
rs1202728480 937 dbSNP
rs969342446 941 dbSNP
rs1451648653 948 dbSNP
rs564133621 952 dbSNP
rs1221201608 955 dbSNP
rs992228043 957 dbSNP
rs41278506 958 dbSNP
rs1463894415 962 dbSNP
rs1295139506 964 dbSNP
rs1343836170 975 dbSNP
rs1387414225 978 dbSNP
rs1325542782 1010 dbSNP
rs1343727548 1012 dbSNP
rs1223092812 1016 dbSNP
rs1279107729 1016 dbSNP
rs1050539164 1017 dbSNP
rs575157268 1019 dbSNP
rs1287046899 1027 dbSNP
rs1393480292 1029 dbSNP
rs1374579476 1032 dbSNP
rs1488731512 1035 dbSNP
rs999090213 1037 dbSNP
rs1266098108 1040 dbSNP
rs1490049310 1041 dbSNP
rs1298388122 1044 dbSNP
rs1264930216 1045 dbSNP
rs925898040 1046 dbSNP
rs1041495360 1047 dbSNP
rs752046343 1055 dbSNP
rs759681920 1057 dbSNP
rs45541532 1060 dbSNP
rs1298999948 1067 dbSNP
rs1461545639 1068 dbSNP
rs992883967 1073 dbSNP
rs1007503995 1074 dbSNP
rs1380755656 1075 dbSNP
rs41278504 1075 dbSNP
rs1322136024 1076 dbSNP
rs1420652764 1077 dbSNP
rs1250886551 1079 dbSNP
rs1051441120 1082 dbSNP
rs1216788667 1083 dbSNP
rs202107920 1083 dbSNP
rs1185578349 1084 dbSNP
rs984567051 1084 dbSNP
rs1261425368 1091 dbSNP
rs952960057 1091 dbSNP
rs1025904893 1096 dbSNP
rs146015426 1097 dbSNP
rs897571931 1101 dbSNP
rs1214365386 1102 dbSNP
rs1328639406 1103 dbSNP
rs1424098949 1105 dbSNP
rs1036149066 1117 dbSNP
rs1347040356 1119 dbSNP
rs572850667 1123 dbSNP
rs531849535 1124 dbSNP
rs1288530935 1126 dbSNP
rs75063499 1130 dbSNP
rs1008631141 1133 dbSNP
rs1300960771 1134 dbSNP
rs564436510 1140 dbSNP
rs1045267855 1141 dbSNP
rs539207975 1142 dbSNP
rs1247758283 1143 dbSNP
rs1327565390 1145 dbSNP
rs1440991961 1150 dbSNP
rs1000276022 1153 dbSNP
rs570329360 1155 dbSNP
rs904407137 1163 dbSNP
rs1387362769 1168 dbSNP
rs1156313188 1175 dbSNP
rs1206044517 1179 dbSNP
rs546212840 1182 dbSNP
rs747563563 1195 dbSNP
rs917885073 1196 dbSNP
rs2281698 1205 dbSNP
rs189700168 1206 dbSNP
rs772496417 1209 dbSNP
rs1158615263 1212 dbSNP
rs534266378 1215 dbSNP
rs559366470 1216 dbSNP
rs968520521 1220 dbSNP
rs917066740 1223 dbSNP
rs548338772 1224 dbSNP
rs1255099334 1225 dbSNP
rs1056917335 1227 dbSNP
rs1405091503 1232 dbSNP
rs1194566030 1234 dbSNP
rs1464495056 1239 dbSNP
rs1281236546 1241 dbSNP
rs1246195317 1242 dbSNP
rs1021484987 1246 dbSNP
rs1351979993 1247 dbSNP
rs927403197 1248 dbSNP
rs1221322783 1252 dbSNP
rs1261610015 1253 dbSNP
rs1007453304 1258 dbSNP
rs142360132 1260 dbSNP
rs931324208 1262 dbSNP
rs1479694783 1265 dbSNP
rs1176744975 1267 dbSNP
rs1425975245 1272 dbSNP
rs918814512 1273 dbSNP
rs1350580781 1275 dbSNP
rs1174587230 1286 dbSNP
rs748448618 1290 dbSNP
rs1465992381 1294 dbSNP
rs1305175058 1296 dbSNP
rs1330776463 1299 dbSNP
rs1352762478 1300 dbSNP
rs972967442 1304 dbSNP
rs997583876 1308 dbSNP
rs1346877079 1317 dbSNP
rs1402659112 1321 dbSNP
rs1282292316 1329 dbSNP
rs1364021618 1330 dbSNP
rs1323234414 1331 dbSNP
rs965643499 1331 dbSNP
rs1019792530 1334 dbSNP
rs986069061 1335 dbSNP
rs897519516 1346 dbSNP
rs560044805 1350 dbSNP
rs1029160205 1356 dbSNP
rs1036504586 1363 dbSNP
rs1005989128 1364 dbSNP
rs115110981 1368 dbSNP
rs532721172 1369 dbSNP
rs1169493336 1371 dbSNP
rs1478025021 1371 dbSNP
rs1417149833 1372 dbSNP
rs1045219367 1373 dbSNP
rs1449040680 1374 dbSNP
rs1371588873 1375 dbSNP
rs1195378760 1377 dbSNP
rs948269762 1380 dbSNP
rs1019935277 1381 dbSNP
rs1165418927 1381 dbSNP
rs1366867652 1381 dbSNP
rs1302139656 1382 dbSNP
rs550249459 1383 dbSNP
rs1010089658 1385 dbSNP
rs1272224500 1385 dbSNP
rs1447705395 1387 dbSNP
rs1214446034 1389 dbSNP
rs1256057122 1397 dbSNP
rs1293206621 1397 dbSNP
rs895775257 1399 dbSNP
rs1220441995 1402 dbSNP
rs1291305969 1403 dbSNP
rs547603772 1403 dbSNP
rs896742699 1403 dbSNP
rs563902909 1407 dbSNP
rs1056748984 1409 dbSNP
rs935313586 1410 dbSNP
rs1340968955 1415 dbSNP
rs1422197721 1421 dbSNP
rs868767075 1423 dbSNP
rs1162313242 1426 dbSNP
rs1268083282 1427 dbSNP
rs1228941521 1428 dbSNP
rs1402044073 1433 dbSNP
rs923987060 1438 dbSNP
rs979899610 1441 dbSNP
rs905923340 1442 dbSNP
rs1316349078 1450 dbSNP
rs185248145 1451 dbSNP
rs778643447 1454 dbSNP
rs1412783922 1458 dbSNP
rs575286444 1466 dbSNP
rs1351516685 1469 dbSNP
rs1207092537 1473 dbSNP
rs561722489 1474 dbSNP
rs1446203822 1475 dbSNP
rs1204139493 1477 dbSNP
rs1313220491 1479 dbSNP
rs1428918788 1480 dbSNP
rs774115461 1482 dbSNP
rs953231556 1483 dbSNP
rs1363831895 1484 dbSNP
rs1470900843 1486 dbSNP
rs1156424725 1490 dbSNP
rs541415650 1496 dbSNP
rs1475782489 1497 dbSNP
rs1337724506 1503 dbSNP
rs944265903 1506 dbSNP
rs912828412 1507 dbSNP
rs1336699464 1512 dbSNP
rs1336406635 1521 dbSNP
rs1476443244 1522 dbSNP
rs1278002804 1525 dbSNP
rs985605004 1527 dbSNP
rs572515266 1529 dbSNP
rs116739034 1533 dbSNP
rs1436476525 1535 dbSNP
rs368744319 1538 dbSNP
rs978903265 1540 dbSNP
rs1197251560 1541 dbSNP
rs1251216555 1542 dbSNP
rs754540720 1544 dbSNP
rs1439027942 1556 dbSNP
rs1179129902 1560 dbSNP
rs1362709943 1564 dbSNP
rs1178165839 1567 dbSNP
rs2281697 1567 dbSNP
rs1431847808 1569 dbSNP
rs1005893861 1572 dbSNP
rs1176323903 1573 dbSNP
rs1397920401 1579 dbSNP
rs1009892141 1582 dbSNP
rs895703140 1583 dbSNP
rs1036036129 1584 dbSNP
rs1001347337 1588 dbSNP
rs576612829 1590 dbSNP
rs759458323 1598 dbSNP
rs774139650 1599 dbSNP
rs1023382303 1600 dbSNP
rs1012363870 1609 dbSNP
rs1251811723 1615 dbSNP
rs1341302753 1615 dbSNP
rs896685510 1620 dbSNP
rs1194015553 1635 dbSNP
rs562463568 1638 dbSNP
rs1490378341 1640 dbSNP
rs1330647981 1646 dbSNP
rs1266406735 1649 dbSNP
rs1048248701 1652 dbSNP
rs931385333 1658 dbSNP
rs897279133 1660 dbSNP
rs193014114 1667 dbSNP
rs1463113488 1668 dbSNP
rs1057097953 1671 dbSNP
rs1166695023 1672 dbSNP
rs1037002728 1676 dbSNP
rs935613759 1676 dbSNP
rs1419178894 1677 dbSNP
rs902482605 1680 dbSNP
rs1305171798 1685 dbSNP
rs1404571584 1686 dbSNP
rs1295952900 1690 dbSNP
rs1328000084 1691 dbSNP
rs1225098453 1695 dbSNP
rs1250725744 1696 dbSNP
rs1043740289 1700 dbSNP
rs1359524983 1712 dbSNP
rs1224164031 1718 dbSNP
rs1468919838 1727 dbSNP
rs946743193 1729 dbSNP
rs1234892257 1730 dbSNP
rs568412583 1734 dbSNP
rs1050442769 1737 dbSNP
rs1186767360 1742 dbSNP
rs932945766 1748 dbSNP
rs911307111 1749 dbSNP
rs925423111 1762 dbSNP
rs1191638797 1767 dbSNP
rs985571823 1772 dbSNP
rs979663716 1778 dbSNP
rs931786110 1781 dbSNP
rs1457548881 1782 dbSNP
rs1289697250 1784 dbSNP
rs1386825136 1786 dbSNP
rs968430697 1787 dbSNP
rs374539476 1790 dbSNP
rs988396546 1790 dbSNP
rs1437996912 1793 dbSNP
rs573720289 1796 dbSNP
rs1312223230 1803 dbSNP
rs976376841 1804 dbSNP
rs16925353 1810 dbSNP
rs1262176281 1812 dbSNP
rs1014966051 1818 dbSNP
rs1247801372 1818 dbSNP
rs970040665 1820 dbSNP
rs555145304 1828 dbSNP
rs1273735594 1829 dbSNP
rs1223081925 1830 dbSNP
rs1423356753 1834 dbSNP
rs534979167 1836 dbSNP
rs1348478082 1844 dbSNP
rs1027227981 1848 dbSNP
rs995349415 1849 dbSNP
rs150296081 1853 dbSNP
rs1037134028 1859 dbSNP
rs1406575182 1860 dbSNP
rs951750917 1866 dbSNP
rs1023325128 1867 dbSNP
rs1324191583 1870 dbSNP
rs891106288 1870 dbSNP
rs1223911841 1881 dbSNP
rs536706468 1886 dbSNP
rs1395397013 1891 dbSNP
rs1237891580 1892 dbSNP
rs146249363 1892 dbSNP
rs3831018 1892 dbSNP
rs778014532 1892 dbSNP
rs1267841430 1894 dbSNP
rs141218257 1909 dbSNP
rs374929962 1912 dbSNP
rs1399403531 1913 dbSNP
rs896622026 1917 dbSNP
rs1491099109 1922 dbSNP
rs1491241485 1923 dbSNP
rs777286350 1926 dbSNP
rs1162754 1928 dbSNP
rs1000151686 1929 dbSNP
rs1191434701 1930 dbSNP
rs1043839858 1931 dbSNP
rs748656555 1931 dbSNP
rs1469540931 1932 dbSNP
rs945551194 1932 dbSNP
rs1370566691 1933 dbSNP
rs1372899096 1933 dbSNP
rs201031228 1934 dbSNP
rs1324686534 1935 dbSNP
rs34811701 1935 dbSNP
rs879027310 1935 dbSNP
rs1253023570 1936 dbSNP
rs1214487706 1937 dbSNP
rs1312068541 1937 dbSNP
rs1445173649 1938 dbSNP
rs1286304428 1939 dbSNP
rs1181705231 1942 dbSNP
rs1224106487 1944 dbSNP
rs1196934511 1945 dbSNP
rs1481293416 1945 dbSNP
rs1424220876 1946 dbSNP
rs1410413539 1947 dbSNP
rs1172483181 1948 dbSNP
rs1352226480 1948 dbSNP
rs1346950014 1951 dbSNP
rs1301516645 1952 dbSNP
rs1236688187 1954 dbSNP
rs1372018424 1955 dbSNP
rs1319913918 1956 dbSNP
rs1428759399 1957 dbSNP
rs1044040559 1958 dbSNP
rs1162755 1959 dbSNP
rs1163609502 1960 dbSNP
rs1188176122 1960 dbSNP
rs1204609133 1960 dbSNP
rs1220563693 1960 dbSNP
rs1226790376 1960 dbSNP
rs1292594614 1960 dbSNP
rs1322527079 1960 dbSNP
rs1340122481 1960 dbSNP
rs1349641514 1960 dbSNP
rs1366926250 1960 dbSNP
rs1417361062 1960 dbSNP
rs1422321889 1960 dbSNP
rs1432005541 1960 dbSNP
rs1448340689 1960 dbSNP
rs1475639921 1960 dbSNP
rs1490885147 1960 dbSNP
rs755419558 1960 dbSNP
rs758031591 1960 dbSNP
rs1289490910 1961 dbSNP
rs139789920 1961 dbSNP
rs768160302 1961 dbSNP
rs912955407 1961 dbSNP
rs1319625392 1965 dbSNP
rs1184171119 1971 dbSNP
rs1386530129 1979 dbSNP
rs539039165 1985 dbSNP
rs1442294305 1989 dbSNP
rs563865774 1990 dbSNP
rs1402090113 1991 dbSNP
rs1320624714 1992 dbSNP
rs1386933608 2004 dbSNP
rs1393586377 2007 dbSNP
rs1175936423 2014 dbSNP
rs889815461 2015 dbSNP
rs959840994 2016 dbSNP
rs148216039 2017 dbSNP
rs530321126 2018 dbSNP
rs772126941 2022 dbSNP
rs148436343 2024 dbSNP
rs372608226 2024 dbSNP
rs1242768659 2025 dbSNP
rs928288138 2027 dbSNP
rs190417744 2028 dbSNP
rs1328274480 2034 dbSNP
rs1204200305 2046 dbSNP
rs184842545 2048 dbSNP
rs1244955330 2055 dbSNP
rs934078244 2056 dbSNP
rs979827939 2057 dbSNP
rs1186146809 2058 dbSNP
rs17297439 2064 dbSNP
rs1470930878 2065 dbSNP
rs558957030 2069 dbSNP
rs1410174355 2073 dbSNP
rs1216489553 2078 dbSNP
rs940560314 2079 dbSNP
rs1409023198 2081 dbSNP
rs757131030 2086 dbSNP
rs751262008 2089 dbSNP
rs765526965 2091 dbSNP
rs961210564 2095 dbSNP
rs1444602550 2099 dbSNP
rs1286747996 2104 dbSNP
rs1349639063 2106 dbSNP
rs1223962991 2109 dbSNP
rs1264778022 2110 dbSNP
rs1020374177 2112 dbSNP
rs1212781596 2112 dbSNP
rs1199824002 2113 dbSNP
rs984703970 2131 dbSNP
rs951694109 2137 dbSNP
rs1439086060 2141 dbSNP
rs916264306 2152 dbSNP
rs1008295562 2157 dbSNP
rs1472464196 2158 dbSNP
rs1200510777 2159 dbSNP
rs1379743608 2164 dbSNP
rs891249293 2169 dbSNP
rs1050182844 2172 dbSNP
rs759719028 2175 dbSNP
rs1397277769 2177 dbSNP
rs1411788457 2181 dbSNP
rs1295188762 2183 dbSNP
rs1306400389 2190 dbSNP
rs778819847 2198 dbSNP
rs117047408 2206 dbSNP
rs1364257827 2207 dbSNP
rs1270851721 2214 dbSNP
rs766504904 2232 dbSNP
rs960494114 2235 dbSNP
rs1374197419 2238 dbSNP
rs904063429 2239 dbSNP
rs1315134181 2249 dbSNP
rs1270746657 2252 dbSNP
rs7910016 2253 dbSNP
rs1273284743 2255 dbSNP
rs1375650784 2256 dbSNP
rs557223507 2258 dbSNP
rs1224275370 2260 dbSNP
rs1490394127 2260 dbSNP
rs999695949 2261 dbSNP
rs967314512 2265 dbSNP
rs1426212074 2268 dbSNP
rs1420940408 2270 dbSNP
rs1269878105 2271 dbSNP
rs945660787 2272 dbSNP
rs892618258 2277 dbSNP
rs1374217576 2280 dbSNP
rs1022535725 2287 dbSNP
rs1056598428 2287 dbSNP
rs1370055205 2288 dbSNP
rs1011181103 2289 dbSNP
rs1295544901 2294 dbSNP
rs1255357650 2299 dbSNP
rs1386062150 2307 dbSNP
rs1318880211 2308 dbSNP
rs1189761561 2314 dbSNP
rs1485909892 2315 dbSNP
rs1226102929 2316 dbSNP
rs1296160924 2317 dbSNP
rs938424015 2319 dbSNP
rs1247691922 2321 dbSNP
rs928414715 2322 dbSNP
rs1336921573 2334 dbSNP
rs889763234 2335 dbSNP
rs1487709455 2338 dbSNP
rs756324817 2341 dbSNP
rs1309500641 2343 dbSNP
rs1273746371 2345 dbSNP
rs1049766448 2346 dbSNP
rs543210732 2347 dbSNP
rs948434874 2349 dbSNP
rs998640134 2349 dbSNP
rs919810383 2351 dbSNP
rs1354083506 2352 dbSNP
rs773716532 2361 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acaUGUCGUCCGU--GUCUGUCc 5'
             |||  |||:|  ||||||| 
Target 5' ---ACA-AAGGUAACCAGACAGc 3'
1 - 19
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000388768.2 | 3UTR | ACAAAGGUAACCAGACAGCUCUCCUUAAGCGGCUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-3120-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT096972 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT442624 LOX lysyl oxidase 2 2
MIRT473438 MDM4 MDM4, p53 regulator 2 2
MIRT490011 KIFC2 kinesin family member C2 2 2
MIRT496449 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496752 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT497721 CYP1A1 cytochrome P450 family 1 subfamily A member 1 2 2
MIRT498287 PADI3 peptidyl arginine deiminase 3 2 2
MIRT503195 ACVR1B activin A receptor type 1B 2 4
MIRT504760 TEP1 telomerase associated protein 1 2 4
MIRT517810 UGDH UDP-glucose 6-dehydrogenase 2 6
MIRT519686 ZNF622 zinc finger protein 622 2 4
MIRT520263 URGCP upregulator of cell proliferation 2 2
MIRT523051 ICMT isoprenylcysteine carboxyl methyltransferase 2 2
MIRT525601 OLR1 oxidized low density lipoprotein receptor 1 2 4
MIRT526995 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT528699 TRAF3IP2 TRAF3 interacting protein 2 2 4
MIRT533142 WNT10A Wnt family member 10A 2 2
MIRT537618 ERI1 exoribonuclease 1 2 2
MIRT539707 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT539752 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT539808 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT539941 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT540424 FAM83F family with sequence similarity 83 member F 2 2
MIRT540509 CXCL10 C-X-C motif chemokine ligand 10 2 2
MIRT540720 GUF1 GUF1 homolog, GTPase 2 2
MIRT541630 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT542286 POLR3K RNA polymerase III subunit K 2 2
MIRT542456 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT542550 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT542771 PPAP2B phospholipid phosphatase 3 2 2
MIRT550085 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT551458 CARKD NAD(P)HX dehydratase 2 2
MIRT555622 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT569136 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT572328 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT574607 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT575583 Mcm8 minichromosome maintenance 8 homologous recombination repair factor 2 4
MIRT576125 Hrk harakiri, BCL2 interacting protein (contains only BH3 domain) 2 5
MIRT576657 Fam216a family with sequence similarity 216, member A 2 2
MIRT607222 ACSM2A acyl-CoA synthetase medium chain family member 2A 2 4
MIRT607292 CD300E CD300e molecule 2 6
MIRT607746 ANGPT4 angiopoietin 4 2 2
MIRT607905 SPRYD4 SPRY domain containing 4 2 2
MIRT608159 HRK harakiri, BCL2 interacting protein 2 7
MIRT608657 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT609115 ZNF703 zinc finger protein 703 2 6
MIRT610231 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT610870 NUDCD3 NudC domain containing 3 2 2
MIRT611217 MC2R melanocortin 2 receptor 2 2
MIRT614858 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT616966 LMX1A LIM homeobox transcription factor 1 alpha 2 2
MIRT617258 GLIPR1L2 GLI pathogenesis related 1 like 2 2 2
MIRT618009 SLC9A3R2 SLC9A3 regulator 2 2 2
MIRT619067 BSND barttin CLCNK type accessory beta subunit 2 4
MIRT619295 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT619348 GINM1 glycoprotein integral membrane 1 2 2
MIRT619362 CFHR5 complement factor H related 5 2 2
MIRT619541 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT619782 NRIP2 nuclear receptor interacting protein 2 2 2
MIRT619994 NPAP1 nuclear pore associated protein 1 2 2
MIRT621030 CDC14B cell division cycle 14B 2 2
MIRT622033 STAT5A signal transducer and activator of transcription 5A 2 2
MIRT622728 PITPNM3 PITPNM family member 3 2 2
MIRT623144 NAV2 neuron navigator 2 2 2
MIRT623600 IPO9 importin 9 2 2
MIRT624608 B3GALT5 beta-1,3-galactosyltransferase 5 2 2
MIRT624905 CTCFL CCCTC-binding factor like 2 2
MIRT625030 SPC24 SPC24, NDC80 kinetochore complex component 2 2
MIRT625688 MCM8 minichromosome maintenance 8 homologous recombination repair factor 2 5
MIRT626531 EMCN endomucin 2 2
MIRT627204 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT628033 LSAMP limbic system-associated membrane protein 2 2
MIRT628203 FREM2 FRAS1 related extracellular matrix protein 2 2 2
MIRT631012 LINS lines homolog 1 2 2
MIRT633195 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 2
MIRT633890 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT634023 MOB4 MOB family member 4, phocein 2 2
MIRT634416 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 2 2
MIRT636866 ARSE arylsulfatase E (chondrodysplasia punctata 1) 2 2
MIRT642527 ANKRD9 ankyrin repeat domain 9 2 2
MIRT645408 FAM110A family with sequence similarity 110 member A 2 2
MIRT645635 SYTL4 synaptotagmin like 4 2 2
MIRT646013 TNFAIP8L2 TNF alpha induced protein 8 like 2 2 2
MIRT646686 ASGR2 asialoglycoprotein receptor 2 2 2
MIRT652838 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT655156 PHF21B PHD finger protein 21B 2 2
MIRT658491 EXOC7 exocyst complex component 7 2 2
MIRT659398 CORO2A coronin 2A 2 2
MIRT666825 PRCP prolylcarboxypeptidase 2 2
MIRT666866 POU2F2 POU class 2 homeobox 2 2 2
MIRT668224 GABRA1 gamma-aminobutyric acid type A receptor alpha1 subunit 2 2
MIRT673288 PDE3A phosphodiesterase 3A 2 2
MIRT673878 KLF2 Kruppel like factor 2 2 2
MIRT681721 KCNE4 potassium voltage-gated channel subfamily E regulatory subunit 4 2 2
MIRT682406 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT684109 MCM10 minichromosome maintenance 10 replication initiation factor 2 2
MIRT684423 TUFT1 tuftelin 1 2 2
MIRT684684 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT686638 TMEM184C transmembrane protein 184C 2 2
MIRT689457 NXN nucleoredoxin 2 2
MIRT689627 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT690773 PLA2G2C phospholipase A2 group IIC 2 2
MIRT690822 SGSM2 small G protein signaling modulator 2 2 2
MIRT693669 MXRA7 matrix remodeling associated 7 2 2
MIRT695553 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT695872 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT698160 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT699933 RUFY2 RUN and FYVE domain containing 2 2 2
MIRT708639 UBE2W ubiquitin conjugating enzyme E2 W 2 2
MIRT710816 RAB11FIP4 RAB11 family interacting protein 4 2 2
MIRT711242 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT711542 MSH3 mutS homolog 3 2 2
MIRT711749 DTX1 deltex E3 ubiquitin ligase 1 2 2
MIRT712303 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT712922 RPF2 ribosome production factor 2 homolog 2 2
MIRT714027 SYDE2 synapse defective Rho GTPase homolog 2 2 2
MIRT714768 TERF1 telomeric repeat binding factor 1 2 2
MIRT714844 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 2 2
MIRT715223 NPVF neuropeptide VF precursor 2 2
MIRT716110 GMPS guanine monophosphate synthase 2 2
MIRT716174 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT716383 C6orf223 chromosome 6 open reading frame 223 2 2
MIRT716527 KSR2 kinase suppressor of ras 2 2 2
MIRT716962 P2RY6 pyrimidinergic receptor P2Y6 2 2
MIRT717605 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT717696 PTGS1 prostaglandin-endoperoxide synthase 1 2 2
MIRT721360 ENTHD1 ENTH domain containing 1 2 2
MIRT721381 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT721935 RASSF2 Ras association domain family member 2 2 2
MIRT722094 SUSD1 sushi domain containing 1 2 2
MIRT722837 C17orf102 chromosome 17 open reading frame 102 2 2
MIRT722990 TOR1A torsin family 1 member A 2 2
MIRT724174 ABCF2 ATP binding cassette subfamily F member 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3120-5p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-3120-5p Prednisone/Azathioprine/Methotrexate/Cyclophosphamide/Mycophenolate mofetil sensitive tissue (myasthenia gravis)
hsa-miR-3120-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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