pre-miRNA Information
pre-miRNA hsa-mir-8066   
Genomic Coordinates chr4: 101240795 - 101240872
Description Homo sapiens miR-8066 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-8066
Sequence 48| CAAUGUGAUCUUUUGGAUGUA |68
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs931560390 4 dbSNP
rs1189907448 6 dbSNP
rs1347410735 8 dbSNP
rs1422871438 10 dbSNP
rs1281396192 14 dbSNP
rs1236502030 19 dbSNP
rs929291819 20 dbSNP
rs756482594 21 dbSNP
Putative Targets

Gene Information
Gene Symbol RFWD3   
Synonyms FANCW, RNF201
Description ring finger and WD repeat domain 3
Transcript NM_018124   
Expression
Putative miRNA Targets on RFWD3
3'UTR of RFWD3
(miRNA target sites are highlighted)
>RFWD3|NM_018124|3'UTR
   1 CTGTGGTCTCGAAACCTTGAAGGCATGCTGCTGGTTAGATGTTGTTTGCTAGCGCCTAGCAGCCCCAAGCAAGATCCCTG
  81 TTTATTGTCTGCAGTCTAGAACATTGGGAATCATGGTTTGTTTGCATTAGTATGATTCTAGGACCCTAGGTCACTGAGAC
 161 ACTACAGATTGTGTATCTGTTATGTCCACTAAAAGAGTAATTGATGGGTACTTTATCTACATTATCCATTTCTTGGGTTT
 241 AAAGCCTTCATTAACCATTATTGTATGTTGGAAATTCTTATTTTCTTTATTTTCTGTGTGACTTTCTGGACCTTAGAGAG
 321 TGTCCTCTCATCATCTAGGATGTGAGTGGGCATCAAGCATTTTCTGGGGAATATGACATCCCATCTGAGTTGTCCTGTCA
 401 CTTAAGTATCCTTGAAGGGACTAACCATCGTCTTGGTACTGATTTGATGCAACGTAGATGTAAAAGAGTATTATTCAGTT
 481 GAACACAAGAGGGCACTGTAGAACCTTGTGTCCGGTTTATTTCTGACCTTGAAGGCTGACAATCTTTTAGTAACTTGTCT
 561 CATCTCCACACAAGTGTGTGATAGCACACCTGGGTGTGCTTTGTGGCAATAACACTTGTGTTCCAGGTGTGAAGTGCTGG
 641 GACATTGGCAGGCCCAGTGATGGAAGCAGCTAGTGAACGATTCCCTTTGCTAATGCCTAGTGCATTAAGTTCATTGCTTT
 721 GCGAAAGGTAAGGAAAGAGGCCAGTTGTTTGAGCGGTGGGGAAGATTTTGTTTTTTCTAGCCAGCTTAGGATCTCAGGAT
 801 TGGTTTTATCCAAGCTAGTGCTTTGAAGAACACTATCTCTTGCCAGGAAAAGATGAGTGATAGGTCAAAGCTTTTACTTG
 881 AGTCTCCCCTAGTGTCAGAGATCAGGAGAAAAGACATAAGAGAATTTACAAAAGCTATTCAGACTGCTATTGAAAACATG
 961 AGAAGAACTTGTCTCCCATTTTGAGAGTTCCTATCTAAATAAAGCCAATTCCTCAGACTGAGGGGCTGTTCTTAAGTGTT
1041 CTTTATACATTCCAGTTATCCAGTTAAAGCCTTCCCCATGTGAAGCTGATGTTTGATTCCAGTTTCCTTTGATTTGCCTC
1121 CCTAACCTTTTCTAGGGCTCAGTTTGTATTTCTTTGCCTTGCCTCAGACTACTTTGCCAACCCACTTCCACAACAGAATA
1201 TGCTTCAAGATGTGGGCAGGTCAGTGTCCTGTTCATGGGAGAAAATGGCTTAACAGTCTGATTTTCTCAAATGATTATTG
1281 AAGAGTTGTTATCGTTTTTATTATAAAACACTTCTGACCTGTCAATTCAAGAGCTGTTTCTAGGATCTTTCTCTCCGGCA
1361 AGGGGTTGTTGCACTAGATTTCCCCAGAGTTCCAAGTTCTAGTTGTGCCTTTTAATGACCCTTTAATATTTTAGGACATA
1441 ATTTTTTCCTTTTTTAAATTTTTTTGTAGAAATAGATGTTTCACTACGTTGTCCAGGCTGGTCTTGGACTCCTGGCCTCA
1521 AGCAATCCTCCCACCTCAGCCTCCTAAAGTGCCAAAATTATAGGCGTGAGCCACTGCACCCGGCCCCTATTTGAAGACGT
1601 CTTTTGTAAAAGCTAGCTTCTAGAACCTGAGAAAAGCTCTTTTCTCAGAGGAGATACTCCTTTTGATATGTTAATGATTA
1681 AGAGTGGTTGCCCAGGCCTAGTTTCAGTGGCAGAATAGGATTGGAATTAAAAAGCAGAACTCATCTGGCTTCAGCAGATT
1761 GCCACCAAGAGGATACAGGTGGTCAGGTCCTGGCTGGCTTTGTCTTTGGGCCTGGGCAGGCTTAGGATTTGACTTTCTTT
1841 GAAGTACCTGATGCTGATTGATTCCACTAATAGTAGGAAGCAAGAGACTTAACTATGAGGGACGTTATGTGAATCTTAAG
1921 TCTTACCAGTCCTTGCATTAGTACATTAAATTTGGATGTTTTGGAAGCAAATTCATACGATCGTGAGTGATTTCTCCAAA
2001 GAAAAAAAGCCTTGTCCAGCCTGACCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAACTGGGTGCAGTG
2081 GTGCGCATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCTGGGAGGCAGAGGTTGCAGT
2161 GAGTCGAGATCGCGCCACTGCACTCCAGCCTCGGTGACAGAGCAAGACTCCATCTCAAAAAAAACAAACAAACAAAAAAA
2241 AACCCTGATGCCATTCCCAGTCCCCGTTGTAGGACATCACATTTATAAATCCAGGCTTTAGTCTTCTGGGCTCCACCAGT
2321 CTCTGCCCCACCATATTCCTTTGTCACTACCTCTAAGTTTTTTTCCCCACTTGAGGATTTGGAGTTAAACGAACTCAAAA
2401 TGTCTTGTCATTGTATGTATTCTTGCCCCTGCTTTGAAAACAGGGCCATGGGAACTCTGTTTATGCCCTGTTTTAATGTT
2481 TCTGTTTTATGTTTTACTGTTAATATGAAAATAAAGAATTTGCTATGTA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' auGUAG-GUUUUCUAGUGUAAc 5'
            |:|: :|::| |||||||| 
Target 5' ccCGTTGTAGGACATCACATTt 3'
2263 - 2284 159.00 -9.60
2
miRNA  3' auGUAGGUUUU---------CUAGUGUAAc 5'
            |||: ::||         | |::|||| 
Target 5' aaCATTGGGAATCATGGTTTGTTTGCATTa 3'
100 - 129 111.00 -5.20
3
miRNA  3' auGUAGGUUUU---------C-UAGU--GUAAc 5'
            ||||:|::|         | ||||  |||| 
Target 5' atCATCTAGGATGTGAGTGGGCATCAAGCATTt 3'
330 - 362 111.00 -8.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30107469 5 COSMIC
COSN26992047 6 COSMIC
COSN30187638 33 COSMIC
COSN30487919 35 COSMIC
COSN30131986 54 COSMIC
COSN30519512 96 COSMIC
COSN28627601 167 COSMIC
COSN19395786 559 COSMIC
COSN195193 695 COSMIC
COSN5411714 1388 COSMIC
COSN20113080 1459 COSMIC
COSN24586687 1542 COSMIC
COSN21521928 2100 COSMIC
COSN25014804 2290 COSMIC
COSN21824485 2482 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs575512378 6 dbSNP
rs369100110 10 dbSNP
rs376800358 11 dbSNP
rs938653427 16 dbSNP
rs773516896 23 dbSNP
rs772499588 24 dbSNP
rs748680308 25 dbSNP
rs779515611 26 dbSNP
rs200985790 27 dbSNP
rs201568694 28 dbSNP
rs553449862 31 dbSNP
rs1057011623 32 dbSNP
rs978388204 36 dbSNP
rs1002790753 39 dbSNP
rs1214143870 42 dbSNP
rs117357621 43 dbSNP
rs750587176 44 dbSNP
rs775003580 47 dbSNP
rs1321126528 48 dbSNP
rs751540083 53 dbSNP
rs567630608 54 dbSNP
rs1343619857 56 dbSNP
rs113977258 62 dbSNP
rs1280575540 67 dbSNP
rs948143833 68 dbSNP
rs1215709592 70 dbSNP
rs964453580 76 dbSNP
rs1195550566 77 dbSNP
rs767361315 79 dbSNP
rs1477709189 85 dbSNP
rs755010961 92 dbSNP
rs1054211000 93 dbSNP
rs987227699 104 dbSNP
rs954502649 107 dbSNP
rs1421174118 110 dbSNP
rs1188650130 112 dbSNP
rs935312616 125 dbSNP
rs1318514627 145 dbSNP
rs924191788 147 dbSNP
rs1486356875 148 dbSNP
rs994143996 149 dbSNP
rs551041872 154 dbSNP
rs185581804 157 dbSNP
rs1016843620 161 dbSNP
rs571568630 162 dbSNP
rs1283665787 165 dbSNP
rs1013001686 166 dbSNP
rs368841030 169 dbSNP
rs954950812 171 dbSNP
rs1057112740 177 dbSNP
rs1451251109 181 dbSNP
rs1196924625 184 dbSNP
rs1254944006 184 dbSNP
rs1199494143 187 dbSNP
rs922131167 188 dbSNP
rs181226970 191 dbSNP
rs1471328434 195 dbSNP
rs1158790172 196 dbSNP
rs528302589 197 dbSNP
rs1403229823 204 dbSNP
rs757103371 206 dbSNP
rs1015984992 208 dbSNP
rs1349098062 214 dbSNP
rs1288264975 218 dbSNP
rs559317114 221 dbSNP
rs549038761 224 dbSNP
rs1445987614 225 dbSNP
rs1004960939 227 dbSNP
rs753708335 232 dbSNP
rs950372846 233 dbSNP
rs751389192 237 dbSNP
rs915199885 253 dbSNP
rs1416001449 259 dbSNP
rs1035757971 260 dbSNP
rs529023673 261 dbSNP
rs1468931854 263 dbSNP
rs576135292 263 dbSNP
rs766329644 267 dbSNP
rs910405178 269 dbSNP
rs1002822023 280 dbSNP
rs1332322946 311 dbSNP
rs1395630862 319 dbSNP
rs189324874 324 dbSNP
rs556191013 325 dbSNP
rs971797778 332 dbSNP
rs1328687171 333 dbSNP
rs1011387475 335 dbSNP
rs963378434 340 dbSNP
rs8058133 341 dbSNP
rs1333311142 342 dbSNP
rs1338445418 344 dbSNP
rs1165529624 350 dbSNP
rs1053836823 357 dbSNP
rs1295289941 369 dbSNP
rs1335551873 371 dbSNP
rs1218165639 373 dbSNP
rs1476168116 374 dbSNP
rs150991472 383 dbSNP
rs1235199073 386 dbSNP
rs764181044 394 dbSNP
rs760679957 397 dbSNP
rs1447157765 399 dbSNP
rs1255937149 400 dbSNP
rs7204804 405 dbSNP
rs1257876990 409 dbSNP
rs1035846361 410 dbSNP
rs1003358668 412 dbSNP
rs933598014 420 dbSNP
rs903303045 421 dbSNP
rs1399814752 423 dbSNP
rs3205212 425 dbSNP
rs922162189 429 dbSNP
rs772450785 430 dbSNP
rs1313256893 433 dbSNP
rs1356401608 449 dbSNP
rs1399606594 450 dbSNP
rs1327510281 453 dbSNP
rs1267947426 454 dbSNP
rs573371329 464 dbSNP
rs1228816986 467 dbSNP
rs1255858795 472 dbSNP
rs767211022 476 dbSNP
rs746442923 486 dbSNP
rs1213543946 489 dbSNP
rs1281469239 489 dbSNP
rs1487782626 494 dbSNP
rs1191009184 496 dbSNP
rs942175630 498 dbSNP
rs1428532321 499 dbSNP
rs774674240 500 dbSNP
rs1198085503 501 dbSNP
rs1375925308 504 dbSNP
rs1011538133 505 dbSNP
rs1174078637 506 dbSNP
rs1359626001 507 dbSNP
rs1337627617 513 dbSNP
rs893135257 514 dbSNP
rs1244181074 517 dbSNP
rs555537348 519 dbSNP
rs1364184707 521 dbSNP
rs1382779921 524 dbSNP
rs553319993 534 dbSNP
rs1327182880 540 dbSNP
rs536749558 542 dbSNP
rs758285366 542 dbSNP
rs1320515190 544 dbSNP
rs950508831 547 dbSNP
rs535581496 552 dbSNP
rs1035387151 554 dbSNP
rs377017032 557 dbSNP
rs28483926 561 dbSNP
rs1326366834 564 dbSNP
rs557353076 568 dbSNP
rs1462902787 571 dbSNP
rs537464033 574 dbSNP
rs116661839 578 dbSNP
rs1475453418 582 dbSNP
rs1022855513 584 dbSNP
rs1194137151 585 dbSNP
rs759098882 587 dbSNP
rs1374353683 588 dbSNP
rs1379473560 594 dbSNP
rs34555719 595 dbSNP
rs1011418467 596 dbSNP
rs1464193336 599 dbSNP
rs375446216 601 dbSNP
rs567687277 601 dbSNP
rs879171150 601 dbSNP
rs1347236552 606 dbSNP
rs918972018 609 dbSNP
rs972230215 613 dbSNP
rs963046035 620 dbSNP
rs1443784561 623 dbSNP
rs551636288 626 dbSNP
rs1304734152 629 dbSNP
rs1376635820 636 dbSNP
rs1214733927 637 dbSNP
rs773680864 638 dbSNP
rs1243573104 640 dbSNP
rs771324434 643 dbSNP
rs908903920 646 dbSNP
rs1288358906 653 dbSNP
rs1214255128 657 dbSNP
rs1228323137 659 dbSNP
rs1456381460 660 dbSNP
rs1178781712 673 dbSNP
rs748899994 678 dbSNP
rs999645050 679 dbSNP
rs1164287242 681 dbSNP
rs1299961853 683 dbSNP
rs1415787387 693 dbSNP
rs1226402003 694 dbSNP
rs143543169 697 dbSNP
rs1303797096 701 dbSNP
rs1442835315 702 dbSNP
rs1400284698 706 dbSNP
rs902577004 716 dbSNP
rs1051733136 717 dbSNP
rs1322795954 721 dbSNP
rs777416233 722 dbSNP
rs900769144 723 dbSNP
rs1039219968 726 dbSNP
rs942272042 729 dbSNP
rs1020335100 744 dbSNP
rs1290992641 747 dbSNP
rs565861595 754 dbSNP
rs1233435212 760 dbSNP
rs186062086 761 dbSNP
rs929090945 764 dbSNP
rs747608873 772 dbSNP
rs1395326141 777 dbSNP
rs564295416 781 dbSNP
rs140448448 788 dbSNP
rs1051683635 803 dbSNP
rs1476303274 808 dbSNP
rs1165810116 815 dbSNP
rs1245389216 816 dbSNP
rs1022636073 830 dbSNP
rs1408746673 832 dbSNP
rs780813920 833 dbSNP
rs990099903 835 dbSNP
rs957502719 836 dbSNP
rs1311435736 837 dbSNP
rs1276799819 841 dbSNP
rs1036085913 849 dbSNP
rs146756215 851 dbSNP
rs1277058026 855 dbSNP
rs754851405 857 dbSNP
rs1359197426 859 dbSNP
rs532784268 868 dbSNP
rs1273543804 876 dbSNP
rs79021677 877 dbSNP
rs545662991 878 dbSNP
rs770142776 889 dbSNP
rs750220423 890 dbSNP
rs1486798748 891 dbSNP
rs78254155 903 dbSNP
rs1474432454 904 dbSNP
rs1274069350 910 dbSNP
rs1188801606 913 dbSNP
rs559887949 913 dbSNP
rs758295708 914 dbSNP
rs754052432 916 dbSNP
rs1337490037 920 dbSNP
rs1172212979 922 dbSNP
rs1377612899 940 dbSNP
rs764224311 943 dbSNP
rs542863137 949 dbSNP
rs1297140956 950 dbSNP
rs1324177233 952 dbSNP
rs574152588 958 dbSNP
rs990237925 961 dbSNP
rs1006499028 964 dbSNP
rs1366886408 968 dbSNP
rs533194844 975 dbSNP
rs76830516 977 dbSNP
rs768821908 983 dbSNP
rs1428547090 985 dbSNP
rs1018284189 999 dbSNP
rs1006854644 1000 dbSNP
rs543967352 1002 dbSNP
rs1283740293 1006 dbSNP
rs891138863 1016 dbSNP
rs1218105086 1019 dbSNP
rs1030217484 1022 dbSNP
rs1412439145 1024 dbSNP
rs1454248623 1026 dbSNP
rs929431584 1029 dbSNP
rs143437222 1031 dbSNP
rs1454931140 1036 dbSNP
rs1158414934 1038 dbSNP
rs180676535 1045 dbSNP
rs897641790 1049 dbSNP
rs1036635650 1054 dbSNP
rs948444422 1058 dbSNP
rs1470764342 1060 dbSNP
rs1254597887 1061 dbSNP
rs775417423 1063 dbSNP
rs1180729040 1067 dbSNP
rs376763470 1067 dbSNP
rs1277539912 1069 dbSNP
rs534905668 1076 dbSNP
rs1482761739 1080 dbSNP
rs1258378426 1103 dbSNP
rs957328713 1105 dbSNP
rs1310699508 1106 dbSNP
rs1214522760 1107 dbSNP
rs924493884 1111 dbSNP
rs1277596959 1124 dbSNP
rs1224144311 1125 dbSNP
rs1255519236 1127 dbSNP
rs1469295663 1137 dbSNP
rs977287866 1141 dbSNP
rs376585995 1146 dbSNP
rs1331049936 1153 dbSNP
rs1362393314 1156 dbSNP
rs767683465 1163 dbSNP
rs1158738039 1165 dbSNP
rs1055473555 1166 dbSNP
rs1409201212 1171 dbSNP
rs1029446625 1174 dbSNP
rs565844835 1183 dbSNP
rs1445923375 1188 dbSNP
rs936975219 1191 dbSNP
rs928316835 1193 dbSNP
rs747144308 1194 dbSNP
rs1280295620 1219 dbSNP
rs1334443257 1220 dbSNP
rs1355501678 1221 dbSNP
rs1231592970 1224 dbSNP
rs571577799 1225 dbSNP
rs1336165182 1226 dbSNP
rs1445290514 1231 dbSNP
rs1248887783 1235 dbSNP
rs997588385 1239 dbSNP
rs1358229309 1241 dbSNP
rs1182086659 1256 dbSNP
rs1175711479 1257 dbSNP
rs964748609 1258 dbSNP
rs1017579260 1274 dbSNP
rs760003856 1275 dbSNP
rs913391848 1277 dbSNP
rs1417908908 1288 dbSNP
rs1006609076 1291 dbSNP
rs1461443223 1291 dbSNP
rs1398375857 1294 dbSNP
rs1410393275 1298 dbSNP
rs888045799 1299 dbSNP
rs555489257 1301 dbSNP
rs140812890 1302 dbSNP
rs8052269 1304 dbSNP
rs1183701891 1309 dbSNP
rs985553853 1310 dbSNP
rs1356115684 1322 dbSNP
rs1237130024 1327 dbSNP
rs1227358342 1340 dbSNP
rs1216844347 1342 dbSNP
rs1250055597 1345 dbSNP
rs907405291 1347 dbSNP
rs1045918604 1349 dbSNP
rs948473959 1352 dbSNP
rs915640641 1353 dbSNP
rs955332561 1356 dbSNP
rs549452742 1357 dbSNP
rs1257622473 1360 dbSNP
rs369920737 1363 dbSNP
rs1266049897 1364 dbSNP
rs1190397556 1367 dbSNP
rs1374785401 1372 dbSNP
rs144876115 1374 dbSNP
rs1370010785 1382 dbSNP
rs924552541 1384 dbSNP
rs1433115707 1387 dbSNP
rs551398500 1390 dbSNP
rs977779903 1392 dbSNP
rs1014759677 1393 dbSNP
rs1381789267 1409 dbSNP
rs955281455 1410 dbSNP
rs1226132871 1414 dbSNP
rs74566592 1419 dbSNP
rs1055442410 1429 dbSNP
rs1346102713 1430 dbSNP
rs1212587276 1437 dbSNP
rs1001258553 1438 dbSNP
rs906850331 1443 dbSNP
rs28529414 1447 dbSNP
rs1436884165 1448 dbSNP
rs547118801 1449 dbSNP
rs377673527 1450 dbSNP
rs1045842835 1451 dbSNP
rs1429081913 1455 dbSNP
rs371326072 1456 dbSNP
rs975194742 1458 dbSNP
rs199617606 1459 dbSNP
rs200940067 1459 dbSNP
rs964780787 1460 dbSNP
rs11327273 1466 dbSNP
rs796790831 1466 dbSNP
rs1457138352 1468 dbSNP
rs1054720898 1486 dbSNP
rs528744336 1487 dbSNP
rs763312081 1488 dbSNP
rs1436491480 1490 dbSNP
rs374114527 1491 dbSNP
rs1325744005 1495 dbSNP
rs1369425754 1499 dbSNP
rs911410126 1501 dbSNP
rs1419214585 1505 dbSNP
rs985521219 1507 dbSNP
rs1316013452 1510 dbSNP
rs1018073900 1516 dbSNP
rs1166928505 1517 dbSNP
rs112411226 1525 dbSNP
rs559799873 1528 dbSNP
rs1026307454 1532 dbSNP
rs993779040 1535 dbSNP
rs1251133570 1543 dbSNP
rs773695232 1544 dbSNP
rs1194081618 1547 dbSNP
rs1024495611 1551 dbSNP
rs1451591367 1552 dbSNP
rs1013060706 1561 dbSNP
rs769319764 1565 dbSNP
rs894236508 1566 dbSNP
rs1054572506 1568 dbSNP
rs867099561 1570 dbSNP
rs1365612730 1577 dbSNP
rs777776105 1581 dbSNP
rs1164290187 1583 dbSNP
rs543170641 1589 dbSNP
rs1267133034 1594 dbSNP
rs1034170263 1598 dbSNP
rs902879959 1599 dbSNP
rs1295735078 1601 dbSNP
rs868155220 1606 dbSNP
rs1308610038 1627 dbSNP
rs1041368384 1629 dbSNP
rs1329417589 1631 dbSNP
rs1232209174 1640 dbSNP
rs755975641 1646 dbSNP
rs922495938 1650 dbSNP
rs1336908081 1652 dbSNP
rs975227311 1656 dbSNP
rs1232112129 1662 dbSNP
rs942500344 1664 dbSNP
rs909714570 1666 dbSNP
rs985315714 1669 dbSNP
rs1295771840 1675 dbSNP
rs1252998646 1676 dbSNP
rs1434842843 1677 dbSNP
rs1391972971 1681 dbSNP
rs952150165 1684 dbSNP
rs1026756490 1691 dbSNP
rs189536063 1692 dbSNP
rs1456872346 1696 dbSNP
rs1010282068 1703 dbSNP
rs1463498756 1716 dbSNP
rs971653057 1719 dbSNP
rs1024528185 1723 dbSNP
rs1460847203 1727 dbSNP
rs1451491920 1728 dbSNP
rs1054687919 1735 dbSNP
rs1013090956 1736 dbSNP
rs894672704 1738 dbSNP
rs752482587 1743 dbSNP
rs1454547079 1745 dbSNP
rs1228830082 1749 dbSNP
rs1000379358 1752 dbSNP
rs1049957804 1755 dbSNP
rs934090934 1765 dbSNP
rs1488129897 1780 dbSNP
rs922639505 1781 dbSNP
rs1206687155 1783 dbSNP
rs149910004 1789 dbSNP
rs1182512738 1793 dbSNP
rs1419495411 1794 dbSNP
rs529062287 1797 dbSNP
rs1041790579 1802 dbSNP
rs1273446439 1807 dbSNP
rs1234652740 1808 dbSNP
rs933626139 1812 dbSNP
rs901102277 1820 dbSNP
rs1039634881 1822 dbSNP
rs543930319 1823 dbSNP
rs1448198790 1824 dbSNP
rs1269057995 1826 dbSNP
rs139079671 1827 dbSNP
rs909736726 1828 dbSNP
rs983953647 1831 dbSNP
rs558088299 1846 dbSNP
rs1367525928 1850 dbSNP
rs1034142708 1856 dbSNP
rs1278543048 1859 dbSNP
rs1431695032 1864 dbSNP
rs1444327695 1867 dbSNP
rs1210969183 1871 dbSNP
rs1368866999 1881 dbSNP
rs1241559031 1888 dbSNP
rs780150170 1891 dbSNP
rs150675219 1894 dbSNP
rs145544625 1895 dbSNP
rs971261472 1899 dbSNP
rs1379103717 1902 dbSNP
rs917249951 1903 dbSNP
rs140241823 1904 dbSNP
rs1342883880 1908 dbSNP
rs1252466761 1909 dbSNP
rs78148391 1926 dbSNP
rs1370155576 1935 dbSNP
rs1481782687 1937 dbSNP
rs1250476379 1941 dbSNP
rs569495124 1942 dbSNP
rs1231879810 1949 dbSNP
rs375210473 1951 dbSNP
rs866111235 1953 dbSNP
rs890083614 1954 dbSNP
rs1346706034 1956 dbSNP
rs1219990898 1977 dbSNP
rs7185722 1978 dbSNP
rs934121228 1979 dbSNP
rs1312042283 1982 dbSNP
rs901355183 1983 dbSNP
rs1289523418 1987 dbSNP
rs1037502095 1991 dbSNP
rs1412271869 1991 dbSNP
rs11647098 2002 dbSNP
rs1307524035 2007 dbSNP
rs1157575990 2010 dbSNP
rs1405175878 2011 dbSNP
rs967541929 2013 dbSNP
rs1019954889 2014 dbSNP
rs1159245915 2025 dbSNP
rs1393702167 2028 dbSNP
rs1438582756 2031 dbSNP
rs997890615 2036 dbSNP
rs751116617 2037 dbSNP
rs570463734 2045 dbSNP
rs765781494 2047 dbSNP
rs1327701413 2056 dbSNP
rs1331421840 2058 dbSNP
rs1437473441 2059 dbSNP
rs900881826 2069 dbSNP
rs1279114734 2072 dbSNP
rs1348802300 2072 dbSNP
rs1230364029 2076 dbSNP
rs1404624996 2080 dbSNP
rs1268820919 2081 dbSNP
rs879807091 2082 dbSNP
rs112884973 2084 dbSNP
rs139061578 2085 dbSNP
rs1292489995 2088 dbSNP
rs1452489973 2090 dbSNP
rs1412520282 2095 dbSNP
rs184809029 2098 dbSNP
rs888345662 2100 dbSNP
rs1048714922 2102 dbSNP
rs1471596203 2103 dbSNP
rs929791680 2105 dbSNP
rs919337616 2106 dbSNP
rs568080331 2107 dbSNP
rs1416469494 2108 dbSNP
rs1459826812 2109 dbSNP
rs1036486072 2124 dbSNP
rs1164865760 2137 dbSNP
rs1391192169 2157 dbSNP
rs1187671809 2165 dbSNP
rs1326590173 2166 dbSNP
rs549676524 2171 dbSNP
rs917282419 2172 dbSNP
rs557725054 2173 dbSNP
rs11859900 2174 dbSNP
rs1024163929 2183 dbSNP
rs926194664 2186 dbSNP
rs1195639958 2188 dbSNP
rs1138860 2192 dbSNP
rs967613547 2193 dbSNP
rs1473901183 2199 dbSNP
rs1189012319 2200 dbSNP
rs1369043968 2203 dbSNP
rs1475026216 2204 dbSNP
rs1230723755 2207 dbSNP
rs1372125090 2208 dbSNP
rs1032678448 2211 dbSNP
rs1327741561 2216 dbSNP
rs3202910 2221 dbSNP
rs889464559 2222 dbSNP
rs1138861 2225 dbSNP
rs1341630313 2225 dbSNP
rs143335463 2225 dbSNP
rs201368423 2226 dbSNP
rs1484477322 2228 dbSNP
rs376054494 2228 dbSNP
rs1208073947 2229 dbSNP
rs1256195098 2229 dbSNP
rs372926679 2229 dbSNP
rs113841907 2232 dbSNP
rs148829079 2233 dbSNP
rs965081732 2233 dbSNP
rs1017914880 2234 dbSNP
rs150095922 2234 dbSNP
rs1382166536 2235 dbSNP
rs1319048249 2237 dbSNP
rs1367969949 2237 dbSNP
rs541384474 2237 dbSNP
rs1303099635 2242 dbSNP
rs199648515 2243 dbSNP
rs1234902962 2246 dbSNP
rs1256089604 2247 dbSNP
rs1389070953 2251 dbSNP
rs1349254926 2253 dbSNP
rs901320922 2256 dbSNP
rs572335787 2265 dbSNP
rs1455537098 2266 dbSNP
rs1465277616 2266 dbSNP
rs759635591 2267 dbSNP
rs1250860152 2272 dbSNP
rs1387839159 2276 dbSNP
rs940092760 2279 dbSNP
rs751995562 2285 dbSNP
rs1378280326 2291 dbSNP
rs115699943 2292 dbSNP
rs1157013855 2295 dbSNP
rs776941268 2296 dbSNP
rs766866747 2301 dbSNP
rs763507692 2310 dbSNP
rs1473492213 2321 dbSNP
rs1366249757 2323 dbSNP
rs1048470006 2324 dbSNP
rs368624933 2325 dbSNP
rs1365861340 2333 dbSNP
rs1449725167 2336 dbSNP
rs1334795248 2338 dbSNP
rs962416315 2338 dbSNP
rs1226095854 2341 dbSNP
rs879261043 2343 dbSNP
rs897022468 2346 dbSNP
rs1046248462 2352 dbSNP
rs1463887715 2355 dbSNP
rs1284165640 2364 dbSNP
rs1268389781 2365 dbSNP
rs1418700092 2368 dbSNP
rs1211027144 2371 dbSNP
rs1414214405 2374 dbSNP
rs950135237 2386 dbSNP
rs903225678 2389 dbSNP
rs138209252 2390 dbSNP
rs375543700 2391 dbSNP
rs917059160 2396 dbSNP
rs1459824382 2398 dbSNP
rs1366234471 2407 dbSNP
rs1294468642 2412 dbSNP
rs1395381980 2417 dbSNP
rs1056208718 2424 dbSNP
rs1407575176 2426 dbSNP
rs988702441 2434 dbSNP
rs1432623180 2443 dbSNP
rs1350502095 2463 dbSNP
rs937319840 2463 dbSNP
rs925945507 2466 dbSNP
rs1324095640 2470 dbSNP
rs979073566 2475 dbSNP
rs946278636 2476 dbSNP
rs1250519748 2480 dbSNP
rs1480446900 2497 dbSNP
rs1407063570 2499 dbSNP
rs955862239 2506 dbSNP
rs1472999170 2522 dbSNP
rs913427027 2525 dbSNP
rs1412331664 2528 dbSNP
rs371926567 2529 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000361070.4 | 3UTR | ACAUUUAUAAAUCCAGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
92 hsa-miR-8066 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT060588 CCND1 cyclin D1 2 2
MIRT067440 RIMKLB ribosomal modification protein rimK like family member B 2 2
MIRT078862 WBP2 WW domain binding protein 2 2 2
MIRT088062 UBXN2A UBX domain protein 2A 2 4
MIRT088214 NUP50 nucleoporin 50 2 2
MIRT103494 HOXA3 homeobox A3 2 8
MIRT135196 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT177727 REEP3 receptor accessory protein 3 2 2
MIRT179439 TBRG1 transforming growth factor beta regulator 1 2 4
MIRT191647 SLC39A9 solute carrier family 39 member 9 2 2
MIRT192342 KLF13 Kruppel like factor 13 2 2
MIRT212035 RAPGEF2 Rap guanine nucleotide exchange factor 2 2 2
MIRT215387 CREBRF CREB3 regulatory factor 2 2
MIRT235001 IER2 immediate early response 2 2 2
MIRT238793 TPD52L1 tumor protein D52 like 1 2 2
MIRT273384 SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 2 4
MIRT280473 UBR7 ubiquitin protein ligase E3 component n-recognin 7 (putative) 2 2
MIRT298320 SLC5A3 solute carrier family 5 member 3 2 2
MIRT309180 SPATA5 spermatogenesis associated 5 2 2
MIRT354483 LRRC58 leucine rich repeat containing 58 2 2
MIRT354710 SLC25A36 solute carrier family 25 member 36 2 2
MIRT361004 CDC5L cell division cycle 5 like 2 4
MIRT366247 VMA21 VMA21, vacuolar ATPase assembly factor 2 2
MIRT405774 EIF5 eukaryotic translation initiation factor 5 2 2
MIRT442640 TBC1D12 TBC1 domain family member 12 2 2
MIRT443928 ZNF99 zinc finger protein 99 2 2
MIRT454287 FXN frataxin 2 2
MIRT454367 ASAH2 N-acylsphingosine amidohydrolase 2 2 2
MIRT463574 ZBTB39 zinc finger and BTB domain containing 39 2 6
MIRT464484 UGCG UDP-glucose ceramide glucosyltransferase 2 2
MIRT466866 STX6 syntaxin 6 2 2
MIRT467283 SPNS1 sphingolipid transporter 1 (putative) 2 2
MIRT470298 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT471630 PAPD7 poly(A) RNA polymerase D7, non-canonical 2 2
MIRT472802 MTMR4 myotubularin related protein 4 2 4
MIRT474708 KIF3A kinesin family member 3A 2 2
MIRT478256 DDX3X DEAD-box helicase 3, X-linked 2 2
MIRT479330 CERS2 ceramide synthase 2 2 2
MIRT480658 BSCL2 BSCL2, seipin lipid droplet biogenesis associated 2 2
MIRT481954 ANKRD11 ankyrin repeat domain 11 2 2
MIRT482895 IAH1 isoamyl acetate-hydrolyzing esterase 1 homolog 2 4
MIRT493634 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT500847 SYPL1 synaptophysin like 1 2 4
MIRT502035 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT502185 IGSF3 immunoglobulin superfamily member 3 2 4
MIRT502605 DNAJB9 DnaJ heat shock protein family (Hsp40) member B9 2 10
MIRT502977 CCNL1 cyclin L1 2 8
MIRT504725 PLEKHA6 pleckstrin homology domain containing A6 2 10
MIRT504778 CLEC2D C-type lectin domain family 2 member D 2 4
MIRT505786 SATB1 SATB homeobox 1 2 4
MIRT510090 PPWD1 peptidylprolyl isomerase domain and WD repeat containing 1 2 4
MIRT520010 YY1 YY1 transcription factor 2 4
MIRT532552 TXNL1 thioredoxin like 1 2 2
MIRT533433 TRPS1 transcriptional repressor GATA binding 1 2 2
MIRT537459 FAM84B family with sequence similarity 84 member B 2 2
MIRT541825 SV2B synaptic vesicle glycoprotein 2B 2 2
MIRT543222 TMEM117 transmembrane protein 117 2 2
MIRT551088 DDX52 DExD-box helicase 52 2 2
MIRT551500 UGT2B4 UDP glucuronosyltransferase family 2 member B4 2 2
MIRT552326 ZNF791 zinc finger protein 791 2 2
MIRT553213 TXLNG taxilin gamma 2 2
MIRT554590 RRAGC Ras related GTP binding C 2 2
MIRT559004 CA8 carbonic anhydrase 8 2 2
MIRT559134 BTG3 BTG anti-proliferation factor 3 2 4
MIRT559409 GDNF glial cell derived neurotrophic factor 2 4
MIRT560678 SRFBP1 serum response factor binding protein 1 2 2
MIRT560954 POTED POTE ankyrin domain family member D 2 2
MIRT562856 C17orf58 chromosome 17 open reading frame 58 2 2
MIRT563003 MOCS2 molybdenum cofactor synthesis 2 2 2
MIRT564545 CCDC80 coiled-coil domain containing 80 2 2
MIRT566272 PTAR1 protein prenyltransferase alpha subunit repeat containing 1 2 2
MIRT566510 PAWR pro-apoptotic WT1 regulator 2 2
MIRT572103 EFNB2 ephrin B2 2 2
MIRT574576 NLGN4X neuroligin 4, X-linked 2 4
MIRT576574 Serpine1 serine (or cysteine) peptidase inhibitor, clade E, member 1 2 2
MIRT610815 POT1 protection of telomeres 1 2 2
MIRT624589 BCL11B B-cell CLL/lymphoma 11B 2 2
MIRT627567 SMAD6 SMAD family member 6 2 2
MIRT632675 MTX3 metaxin 3 2 2
MIRT689265 WDR83OS WD repeat domain 83 opposite strand 2 2
MIRT694310 COPB2 coatomer protein complex subunit beta 2 2 2
MIRT697721 USP8 ubiquitin specific peptidase 8 2 2
MIRT700209 RFWD3 ring finger and WD repeat domain 3 2 2
MIRT704399 CTSS cathepsin S 2 2
MIRT710665 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 2
MIRT711953 SLC7A14 solute carrier family 7 member 14 2 2
MIRT712596 ADCYAP1 adenylate cyclase activating polypeptide 1 2 2
MIRT712692 TNFAIP2 TNF alpha induced protein 2 2 2
MIRT714171 PPP1R2 protein phosphatase 1 regulatory inhibitor subunit 2 2 2
MIRT715964 CES4A carboxylesterase 4A 2 2
MIRT722781 PDE3A phosphodiesterase 3A 2 2
MIRT724505 MSMO1 methylsterol monooxygenase 1 2 2

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