pre-miRNA Information
pre-miRNA hsa-mir-3160-1   
Genomic Coordinates chr11: 46451805 - 46451889
Description Homo sapiens miR-3160-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3160-2   
Genomic Coordinates chr11: 46451807 - 46451887
Description Homo sapiens miR-3160-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3160-3p
Sequence 54| AGAGCUGAGACUAGAAAGCCCA |75
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30582333 1 COSMIC
COSN1535547 3 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1396368683 1 dbSNP
rs1162409303 2 dbSNP
rs1404378453 12 dbSNP
rs1171960732 14 dbSNP
rs1324633375 16 dbSNP
rs1187765019 16 dbSNP
rs1300058326 19 dbSNP
rs1432898407 21 dbSNP
rs1011279103 22 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PNO1   
Synonyms KHRBP1, RRP20
Description partner of NOB1 homolog
Transcript NM_020143   
Expression
Putative miRNA Targets on PNO1
3'UTR of PNO1
(miRNA target sites are highlighted)
>PNO1|NM_020143|3'UTR
   1 TTTCAAGTCAGAGACTTTTTATCTTGCCTTTGGACTCTGGTGAAAAATACTTTACAGTGGTCGGTCACAAGAAACCAGCT
  81 GAACAATTTCAGTCATTTGAAGCCTCCGTCCCTTCTTCCATTCTCAGCCAGAAGCATAAACAGAAAAGAAAGATTTAAGA
 161 GGATTCACACTCAACAGGTTTTAGGATAATTTAAATATCAAAAATTGATTGTTATACTTAACACATTAGGTATAATTTAT
 241 CATTTATCTGAAATCACATGTAGCAGATTGCATAGTCTGTAATCCTCTCAGAGGGAAACTTCTTGTTTAAACAGCTCTAT
 321 ATGGATTTATACTTTTATATTTATAAATTTATAACTTCATACAAATTTATAAACATTTCTTTATAAATTGTAATTTAATA
 401 GATTATCTCAGAAAAACCTCTCTGAATGATGACCCTTCCTTAATACTGGGTGATGTGTGAATATTTGTTTGTTGGCAGAC
 481 AGGGTCTCACTTTGTCACCCAGGCTAGAGTGCAGTGGTGCAATCTCAGCTCACTGCAGCCTCTGCCTCCTGAGTTCAAGT
 561 GATCCTCCTGCTTCAGCCTCCCTAGTAGCTGGGACTACAGGTATGCACCACCATGCCTGGCTAATTTTTTGTATTTTTTG
 641 TAGAGATGGGGTTTCGCCATGTTGACCAGGCTGGTCTTGAACTCCTGGCCTCAAGGGATCCGTCCGCCTCAGCCTCCCAA
 721 AGTGCTGGGATTACAGGCATAAGCCACTGCGCCTGGCCTTGATGTGTGAATATTTGAGAGGTCATAAGCAGTGGTTTTGG
 801 CCATACCGTATTATACCATATACATCAGTAAGAGCTCATCTTGGAACCTGTTTTGCAGTTTCTTGCAGTTTCAAAAATTA
 881 AAGACCTACATCACAGGGTTAATGTGAAGAAAGCTTTATTTTTCAAATGAGTATTTAATGAAAGTATACATAACCAATGT
 961 TGGGTATACAGATGCTTCTCAACTTATGATGGGTTTAGGTCCAGATAAGCCCACTGTGAGTTGAAAATACCAAAAGTCAA
1041 ACATCATAGCTTAGCCTACCTTAAAAGGGCTCCGAACACTACATTAGCCTACAGTTGGGCAAAATCGTCTAATACAAAGC
1121 CTATTTTATAATAAAGTATGTTGAATATCTCATGTAATTTTTGAAGATTACATTGAAAGTGAAAAACAGAATGGTTGGGT
1201 ACTTGAAATACAGCTTCTACTGAATGAATAATTCTAAAGTTGAAAAATAATAGTAAGAACCATCATAAGTCTGTTTCTTC
1281 TAGTAAAGGTGAAATGATGAAAGAATGCTTTTTTCCCACCCAAAAAACTATGCTCTATAAATGCAGATTAGCTAGTTTCT
1361 GCCTGTTTAAATGGTATTATTTTATACATTACAAAATGGAAGGAACTTACTTTATTAAACTTAACTTTGATACTTC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acccgaaagaUCAGAGUCGAGa 5'
                    | ||||||||| 
Target 5' gcagtggtgcAATCTCAGCTCa 3'
511 - 532 152.00 -14.80
2
miRNA  3' acccgaAAGAUCAGAGUCGaga 5'
                ||| | |||||||   
Target 5' cccttcTTCCATTCTCAGCcag 3'
110 - 131 124.00 -9.32
3
miRNA  3' acccgaAAGAUCAG---AGUCGAGa 5'
                |||| ||:    |||||| 
Target 5' ggaaacTTCTTGTTTAAACAGCTCt 3'
294 - 318 124.00 -13.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN20074395 2 COSMIC
COSN30539272 40 COSMIC
COSN31587774 48 COSMIC
COSN31608841 72 COSMIC
COSN1241756 109 COSMIC
COSN31560796 151 COSMIC
COSN31590769 162 COSMIC
COSN20096786 222 COSMIC
COSN31778231 809 COSMIC
COSN5954861 809 COSMIC
COSN20096796 864 COSMIC
COSN16108010 981 COSMIC
COSN26283869 1388 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs777034151 4 dbSNP
rs773101063 5 dbSNP
rs1291001588 10 dbSNP
rs1436968607 10 dbSNP
rs540184797 12 dbSNP
rs761940865 16 dbSNP
rs770713774 16 dbSNP
rs889951839 18 dbSNP
rs1442991164 21 dbSNP
rs776206207 22 dbSNP
rs759031863 24 dbSNP
rs765376086 26 dbSNP
rs751392713 28 dbSNP
rs1166612598 29 dbSNP
rs1396242201 34 dbSNP
rs1424458768 36 dbSNP
rs764710809 38 dbSNP
rs1410815569 43 dbSNP
rs1245638784 48 dbSNP
rs1450850467 48 dbSNP
rs1331285068 49 dbSNP
rs1273205079 54 dbSNP
rs1187341872 61 dbSNP
rs1461509117 64 dbSNP
rs373847018 67 dbSNP
rs1212692891 76 dbSNP
rs1060842 79 dbSNP
rs1229749008 80 dbSNP
rs755883159 109 dbSNP
rs1295518958 113 dbSNP
rs1250282633 117 dbSNP
rs1434386928 128 dbSNP
rs779719819 129 dbSNP
rs1184695441 140 dbSNP
rs749178124 143 dbSNP
rs1358341637 145 dbSNP
rs1415940149 149 dbSNP
rs374405014 153 dbSNP
rs1474970328 154 dbSNP
rs569674763 160 dbSNP
rs965626239 165 dbSNP
rs1165759727 166 dbSNP
rs972677024 175 dbSNP
rs1025616746 179 dbSNP
rs1420067924 185 dbSNP
rs372667008 186 dbSNP
rs535070439 190 dbSNP
rs984215655 198 dbSNP
rs1415600493 204 dbSNP
rs1179726914 205 dbSNP
rs1237297012 209 dbSNP
rs1482503993 209 dbSNP
rs1206246452 213 dbSNP
rs1484328296 216 dbSNP
rs3836051 220 dbSNP
rs796989782 220 dbSNP
rs201928302 221 dbSNP
rs78211175 222 dbSNP
rs1395553466 223 dbSNP
rs1227848170 232 dbSNP
rs1269869368 233 dbSNP
rs947897178 242 dbSNP
rs1309528315 253 dbSNP
rs749127737 259 dbSNP
rs768989331 269 dbSNP
rs1353193705 272 dbSNP
rs1411369752 273 dbSNP
rs1368636625 274 dbSNP
rs868783175 275 dbSNP
rs1413714303 286 dbSNP
rs1307337352 289 dbSNP
rs538613800 290 dbSNP
rs1422902370 318 dbSNP
rs927836760 318 dbSNP
rs1322946215 322 dbSNP
rs1225931145 327 dbSNP
rs1251241959 328 dbSNP
rs1183352636 330 dbSNP
rs1473772561 332 dbSNP
rs1250318914 333 dbSNP
rs1488873171 334 dbSNP
rs935256061 334 dbSNP
rs1267338991 338 dbSNP
rs1340575827 339 dbSNP
rs1321365304 341 dbSNP
rs1289148801 342 dbSNP
rs1207757699 351 dbSNP
rs186296080 352 dbSNP
rs780929292 356 dbSNP
rs749870690 358 dbSNP
rs1392731599 362 dbSNP
rs893483088 363 dbSNP
rs1456904511 371 dbSNP
rs1389004694 374 dbSNP
rs946398891 380 dbSNP
rs112809838 381 dbSNP
rs1410177799 390 dbSNP
rs1426777865 391 dbSNP
rs1434279807 393 dbSNP
rs888886507 395 dbSNP
rs1189554862 398 dbSNP
rs1191015307 401 dbSNP
rs1269076353 402 dbSNP
rs1372412729 406 dbSNP
rs1267279416 418 dbSNP
rs147836514 418 dbSNP
rs1233623118 419 dbSNP
rs1041619702 421 dbSNP
rs901408296 423 dbSNP
rs1385788050 425 dbSNP
rs13003580 427 dbSNP
rs1025888294 431 dbSNP
rs1432490956 441 dbSNP
rs1387393783 454 dbSNP
rs1158367539 456 dbSNP
rs1466814897 458 dbSNP
rs1174563470 462 dbSNP
rs1379952586 462 dbSNP
rs1170256730 464 dbSNP
rs1373351375 466 dbSNP
rs1190534585 483 dbSNP
rs1463720867 484 dbSNP
rs952713951 485 dbSNP
rs966356946 504 dbSNP
rs1433736700 506 dbSNP
rs1005992728 508 dbSNP
rs1313085871 508 dbSNP
rs1380795343 509 dbSNP
rs1023708752 521 dbSNP
rs1342738925 523 dbSNP
rs969891134 526 dbSNP
rs981944312 528 dbSNP
rs1364019902 529 dbSNP
rs72622603 532 dbSNP
rs1397039069 536 dbSNP
rs956576931 540 dbSNP
rs111482099 544 dbSNP
rs915200811 547 dbSNP
rs1231210807 548 dbSNP
rs1170564172 557 dbSNP
rs1447727428 565 dbSNP
rs1188478205 566 dbSNP
rs1278668928 572 dbSNP
rs1347586046 575 dbSNP
rs1199616769 579 dbSNP
rs543321844 580 dbSNP
rs946385442 584 dbSNP
rs772311217 601 dbSNP
rs1257977571 604 dbSNP
rs1284478706 606 dbSNP
rs1246499665 607 dbSNP
rs1484965022 609 dbSNP
rs1311043267 615 dbSNP
rs1414472175 623 dbSNP
rs191158520 624 dbSNP
rs944470476 624 dbSNP
rs1041155675 626 dbSNP
rs1262433770 634 dbSNP
rs1427959835 634 dbSNP
rs183816505 640 dbSNP
rs901356010 651 dbSNP
rs1450037496 656 dbSNP
rs761089990 657 dbSNP
rs1047287308 660 dbSNP
rs888730342 665 dbSNP
rs1005524638 667 dbSNP
rs1393092962 669 dbSNP
rs1024075855 671 dbSNP
rs1202912817 672 dbSNP
rs1436764610 688 dbSNP
rs1453571977 702 dbSNP
rs541887415 703 dbSNP
rs1353821485 706 dbSNP
rs766974340 707 dbSNP
rs1233119107 715 dbSNP
rs13004407 719 dbSNP
rs527824732 739 dbSNP
rs373052575 744 dbSNP
rs1408567329 746 dbSNP
rs547869891 749 dbSNP
rs564675135 751 dbSNP
rs533522157 752 dbSNP
rs1407089407 757 dbSNP
rs1388931795 759 dbSNP
rs1164467144 763 dbSNP
rs1035136191 764 dbSNP
rs746161004 769 dbSNP
rs1301844893 771 dbSNP
rs1179701685 772 dbSNP
rs956521944 774 dbSNP
rs764272968 776 dbSNP
rs560964402 785 dbSNP
rs1247142732 794 dbSNP
rs1235461084 800 dbSNP
rs1200450966 804 dbSNP
rs987996347 807 dbSNP
rs1272205830 808 dbSNP
rs1208932512 809 dbSNP
rs1315350557 815 dbSNP
rs1330719052 817 dbSNP
rs761136887 839 dbSNP
rs550508858 840 dbSNP
rs570334254 844 dbSNP
rs1226883528 845 dbSNP
rs1350597228 846 dbSNP
rs968380044 849 dbSNP
rs398060264 853 dbSNP
rs61460260 853 dbSNP
rs1210557610 862 dbSNP
rs867838941 864 dbSNP
rs868079437 865 dbSNP
rs985788243 865 dbSNP
rs1251047578 869 dbSNP
rs1325533110 872 dbSNP
rs910210795 875 dbSNP
rs1391029666 886 dbSNP
rs10197082 897 dbSNP
rs548736709 898 dbSNP
rs1425855245 900 dbSNP
rs10173197 902 dbSNP
rs1476778773 905 dbSNP
rs1416967578 910 dbSNP
rs1157893526 914 dbSNP
rs919033041 915 dbSNP
rs1412122577 919 dbSNP
rs1465987851 934 dbSNP
rs776822864 939 dbSNP
rs1214176667 940 dbSNP
rs1047235023 942 dbSNP
rs888681644 943 dbSNP
rs534466212 947 dbSNP
rs1394407905 950 dbSNP
rs1221408641 951 dbSNP
rs1346295795 952 dbSNP
rs941611257 953 dbSNP
rs1045039359 956 dbSNP
rs1367699918 957 dbSNP
rs1318765490 961 dbSNP
rs1429824645 968 dbSNP
rs1359492984 970 dbSNP
rs1437721234 974 dbSNP
rs1295683793 976 dbSNP
rs1371568570 978 dbSNP
rs905185355 979 dbSNP
rs557385227 988 dbSNP
rs571125069 994 dbSNP
rs563562706 1000 dbSNP
rs77034057 1010 dbSNP
rs1388001260 1012 dbSNP
rs892583123 1014 dbSNP
rs1009375037 1016 dbSNP
rs1212630197 1017 dbSNP
rs1238447117 1017 dbSNP
rs866994226 1018 dbSNP
rs1280236380 1032 dbSNP
rs556715037 1032 dbSNP
rs1206025937 1034 dbSNP
rs532163441 1041 dbSNP
rs1344376388 1042 dbSNP
rs1293754002 1044 dbSNP
rs967949454 1049 dbSNP
rs986458979 1052 dbSNP
rs552174926 1055 dbSNP
rs1222157854 1071 dbSNP
rs1412625470 1074 dbSNP
rs1248297144 1075 dbSNP
rs1479519544 1078 dbSNP
rs1176336652 1088 dbSNP
rs371855423 1092 dbSNP
rs1431158030 1093 dbSNP
rs751240324 1100 dbSNP
rs975750985 1108 dbSNP
rs1169092313 1112 dbSNP
rs1473333986 1130 dbSNP
rs1162172089 1131 dbSNP
rs918980461 1141 dbSNP
rs1184026351 1148 dbSNP
rs1474422142 1148 dbSNP
rs1257487534 1154 dbSNP
rs929079068 1174 dbSNP
rs1249713535 1179 dbSNP
rs1203834777 1182 dbSNP
rs1322560628 1184 dbSNP
rs530402363 1188 dbSNP
rs941573315 1192 dbSNP
rs542895785 1200 dbSNP
rs1411622482 1213 dbSNP
rs939320076 1219 dbSNP
rs1297121406 1221 dbSNP
rs1457962519 1224 dbSNP
rs1351314704 1228 dbSNP
rs1162227949 1232 dbSNP
rs555523293 1247 dbSNP
rs1056491361 1252 dbSNP
rs1417632370 1252 dbSNP
rs1183286702 1255 dbSNP
rs1248950943 1261 dbSNP
rs892527670 1261 dbSNP
rs1176758210 1266 dbSNP
rs1488842011 1267 dbSNP
rs1353161465 1268 dbSNP
rs1212026060 1270 dbSNP
rs1441926427 1272 dbSNP
rs1334396098 1275 dbSNP
rs1268556709 1290 dbSNP
rs1009656446 1297 dbSNP
rs1315064612 1297 dbSNP
rs1306184188 1298 dbSNP
rs1386892221 1299 dbSNP
rs1308956440 1301 dbSNP
rs1369054767 1304 dbSNP
rs1323258688 1308 dbSNP
rs572355707 1309 dbSNP
rs1439735216 1312 dbSNP
rs1388843546 1315 dbSNP
rs752446886 1315 dbSNP
rs1160372382 1321 dbSNP
rs1352569417 1323 dbSNP
rs55980783 1329 dbSNP
rs1455670238 1331 dbSNP
rs541544745 1336 dbSNP
rs1362627437 1337 dbSNP
rs1413120599 1338 dbSNP
rs1158993712 1344 dbSNP
rs1433886754 1345 dbSNP
rs564539691 1346 dbSNP
rs1427397465 1347 dbSNP
rs1022092428 1350 dbSNP
rs1468219103 1351 dbSNP
rs767024466 1356 dbSNP
rs1210415801 1365 dbSNP
rs1292773486 1366 dbSNP
rs1484755779 1377 dbSNP
rs1260112904 1382 dbSNP
rs1357121712 1384 dbSNP
rs1313831885 1389 dbSNP
rs903675941 1390 dbSNP
rs1365558002 1405 dbSNP
rs779352274 1405 dbSNP
rs1177476391 1410 dbSNP
rs1322122652 1410 dbSNP
rs1007418207 1412 dbSNP
rs1383224044 1423 dbSNP
rs1203572346 1426 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acccgaaagaucAGAGUCGAGa 5'
                      ||||||||| 
Target 5' -----------aUCUCAGCUCa 3'
1 - 11
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_020143 | 3UTR | GGCUAGAGUGCAGUGGUGCAAUCUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000263657.2 | 3UTR | AUCUCAGCUCACUGCAGCCUCUGCCUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
118 hsa-miR-3160-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT066658 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT075318 SF3B3 splicing factor 3b subunit 3 2 4
MIRT077083 EIF1 eukaryotic translation initiation factor 1 2 2
MIRT100381 HSPA1B heat shock protein family A (Hsp70) member 1B 2 6
MIRT135259 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT184913 ZNF268 zinc finger protein 268 2 2
MIRT218862 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT446580 FPR2 formyl peptide receptor 2 2 2
MIRT448834 FGD4 FYVE, RhoGEF and PH domain containing 4 2 2
MIRT449455 RNF13 ring finger protein 13 2 2
MIRT452284 CARD8 caspase recruitment domain family member 8 2 2
MIRT452628 FAM162A family with sequence similarity 162 member A 2 2
MIRT453454 GLG1 golgi glycoprotein 1 2 2
MIRT454188 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 6
MIRT454434 GTF2F1 general transcription factor IIF subunit 1 2 2
MIRT454575 NT5DC3 5'-nucleotidase domain containing 3 2 2
MIRT455555 TRAF1 TNF receptor associated factor 1 2 6
MIRT455841 MPL MPL proto-oncogene, thrombopoietin receptor 2 6
MIRT455969 BCAS4 breast carcinoma amplified sequence 4 2 4
MIRT456805 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457320 DUSP19 dual specificity phosphatase 19 2 2
MIRT457366 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT457684 ZNF587 zinc finger protein 587 2 2
MIRT458158 LYRM4 LYR motif containing 4 2 6
MIRT458641 SGPP2 sphingosine-1-phosphate phosphatase 2 2 2
MIRT459134 FADS6 fatty acid desaturase 6 2 2
MIRT459153 NARF nuclear prelamin A recognition factor 2 4
MIRT460460 NOM1 nucleolar protein with MIF4G domain 1 2 4
MIRT460974 STK17B serine/threonine kinase 17b 2 2
MIRT461439 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
MIRT461507 NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 2 2
MIRT462490 GSR glutathione-disulfide reductase 2 2
MIRT462638 PHF5A PHD finger protein 5A 2 2
MIRT463279 ZFX zinc finger protein, X-linked 2 2
MIRT463360 ZFAND4 zinc finger AN1-type containing 4 2 2
MIRT465777 TMOD3 tropomodulin 3 2 2
MIRT466143 TMEM120B transmembrane protein 120B 2 2
MIRT468401 SETD3 SET domain containing 3 2 2
MIRT468998 RNPS1 RNA binding protein with serine rich domain 1 2 2
MIRT471574 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT472108 NME2 NME/NM23 nucleoside diphosphate kinase 2 2 2
MIRT472125 NME1-NME2 NME1-NME2 readthrough 2 2
MIRT473020 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT473083 MORN4 MORN repeat containing 4 2 2
MIRT475598 HMGB2 high mobility group box 2 2 4
MIRT475937 GXYLT2 glucoside xylosyltransferase 2 2 8
MIRT476117 GPR157 G protein-coupled receptor 157 2 2
MIRT476406 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT478003 DNAL1 dynein axonemal light chain 1 2 2
MIRT487969 IQSEC2 IQ motif and Sec7 domain 2 2 2
MIRT489418 TUBB2A tubulin beta 2A class IIa 2 2
MIRT491522 IL10RA interleukin 10 receptor subunit alpha 2 2
MIRT492673 PLEC plectin 2 2
MIRT493545 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT513085 USP9X ubiquitin specific peptidase 9, X-linked 2 2
MIRT514009 CECR2 CECR2, histone acetyl-lysine reader 2 4
MIRT516683 ZNF860 zinc finger protein 860 2 2
MIRT518392 ZNF250 zinc finger protein 250 2 2
MIRT522683 LUZP1 leucine zipper protein 1 2 6
MIRT524488 CEP97 centrosomal protein 97 2 2
MIRT527457 CLEC12B C-type lectin domain family 12 member B 2 2
MIRT527705 IL17REL interleukin 17 receptor E like 2 2
MIRT531647 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT532381 UMPS uridine monophosphate synthetase 2 2
MIRT532588 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 2 2
MIRT533555 TPM4 tropomyosin 4 2 2
MIRT548371 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 4
MIRT550250 PVR poliovirus receptor 2 2
MIRT552555 ZFP36L2 ZFP36 ring finger protein like 2 2 4
MIRT554113 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 2 2
MIRT554131 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT561344 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT561638 RUNX3 runt related transcription factor 3 2 2
MIRT566497 PBX2P1 PBX homeobox 2 pseudogene 1 2 2
MIRT570583 OTUD7B OTU deubiquitinase 7B 2 2
MIRT572731 MCTS1 MCTS1, re-initiation and release factor 2 2
MIRT574041 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT575231 Fut1 fucosyltransferase 1 2 2
MIRT606811 BICD2 BICD cargo adaptor 2 2 2
MIRT621016 CLSTN3 calsyntenin 3 2 2
MIRT637852 PDCL3 phosducin like 3 2 2
MIRT640477 ZNF557 zinc finger protein 557 2 2
MIRT642827 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT643887 IMP4 IMP4, U3 small nucleolar ribonucleoprotein 2 2
MIRT664874 PCNXL2 pecanex homolog 2 2 2
MIRT680528 PRIM2 DNA primase subunit 2 2 2
MIRT680648 KIAA1456 KIAA1456 2 2
MIRT680807 ZNF578 zinc finger protein 578 2 2
MIRT680921 STX2 syntaxin 2 2 2
MIRT681112 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT681147 INTS7 integrator complex subunit 7 2 2
MIRT681966 TFCP2 transcription factor CP2 2 2
MIRT684316 GTF3C4 general transcription factor IIIC subunit 4 2 2
MIRT684906 GSG2 histone H3 associated protein kinase 2 2
MIRT685499 MED16 mediator complex subunit 16 2 2
MIRT685929 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686875 SLC25A32 solute carrier family 25 member 32 2 2
MIRT688204 FNIP1 folliculin interacting protein 1 2 2
MIRT688791 CCNB1 cyclin B1 2 2
MIRT689227 RPS19 ribosomal protein S19 2 2
MIRT690470 ZNF33A zinc finger protein 33A 2 2
MIRT691982 PLCXD1 phosphatidylinositol specific phospholipase C X domain containing 1 2 2
MIRT694006 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694529 TRIM72 tripartite motif containing 72 2 2
MIRT695420 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT695784 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT697799 UBXN2A UBX domain protein 2A 2 2
MIRT698275 TMEM2 transmembrane protein 2 2 2
MIRT698317 TMEM136 transmembrane protein 136 2 2
MIRT699971 RREB1 ras responsive element binding protein 1 2 2
MIRT700717 PNO1 partner of NOB1 homolog 2 2
MIRT701721 MTMR12 myotubularin related protein 12 2 2
MIRT701879 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT702959 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT706178 ZNF716 zinc finger protein 716 2 2
MIRT706463 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT718154 TTC33 tetratricopeptide repeat domain 33 2 2
MIRT718711 ANKRD18A ankyrin repeat domain 18A 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3160-3p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-3160-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-3160-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3160-3p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-3160-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3160-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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