pre-miRNA Information
pre-miRNA hsa-mir-2115   
Genomic Coordinates chr3: 48316360 - 48316459
Description Homo sapiens miR-2115 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-2115-3p
Sequence 58| CAUCAGAAUUCAUGGAGGCUAG |79
Evidence Experimental
Experiments 454
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN31490809 22 COSMIC
COSN31579735 22 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs543123304 18 dbSNP
rs1450988157 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PDS5A   
Synonyms PIG54, SCC-112, SCC112
Description PDS5 cohesin associated factor A
Transcript NM_001100399   
Other Transcripts NM_001100400   
Expression
Putative miRNA Targets on PDS5A
3'UTR of PDS5A
(miRNA target sites are highlighted)
>PDS5A|NM_001100399|3'UTR
   1 AAATGCATTTGCAAAGGGAGAAAATGAAGGCCAAACAGAAGCAGGCTCCAGCTTCTGCAAAAACTTGGATTCACAAATGT
  81 CCCTGAACAGAAAATGAAGCTCACTTCAGAACACACACTCTCTGCCTTGAAAACTAAAGAGACTATTACTTCCTTTTCAC
 161 ATGACCACAAGTCCTCTGATGGAAATGTACAGCAGAAACTCTTGAGAGAGAGGCTAAAAGCAACTCTGTTCTCCCCCTTC
 241 CCCTAGACTTTTCTTACGAAAAGTCAATAATTAAGCAAATTGCTTAACACTTGGTTCCAGTTCCTGCCTATCTGGAGTTT
 321 AAATGCGTAATACACCATTAATTTCCACGCTGCAGTTTTTATTTTAAAGAAAGTAACAAGATGTCTTTACACTGACACTG
 401 AAAATTCATCCATTTTAGAGCCAGGAATTCCCATGTTACACAGGAAAAAATAGAAGTCTACTGAATTAATTTTTTAAAAG
 481 AAAAGAGATCAGATTAAATATTTCTTTGTTTTTCCTTTTGGAAACTTTTATGTATAATTCTTTCTGCCTGCCTACTTTTC
 561 TGCAAAAATGAGATGTACAGATTTCGGTTCCCTGCTATGAAAAGTGATGTGGTAGCAATTTTATAAATGTTGCTTTCTGA
 641 TTTTTATCAGAGTGAGAAAATTAAAATTATTGATTTGCAAGTAGTAAACAGTTCATATTTTGATTTCCCCTCATTTTAGT
 721 TTAATATAATTTGCAATAAATGTACATATTGTTGTTTGTTTCATAAAGCATATCACTTTAAAATGGTTTTTACTCCTGTG
 801 ATTATGTTGGAATATTTGGAATTTTAAAGGAGTAAAGACTGTCCAGCATTTGGTTTTATAATGTTTGTCACCAGATTTTT
 881 ATTAATGTAAAAAAAATCAATTTTTAAAAAATAGTTGGACTTTGGCAGCTTTTAAGGAAAGTTGGAGGTGTTTTAGGATT
 961 GCTATCAATTTTCAGCATTGTGCTATTTGGAAATAAGTGTTTTGCTTTTGTCTGATGGTCTGGGCTCATTTTTATGTTTA
1041 TTTTAGAAAACTGTTGCATCAATATATTATGTTTCTTGGCATTGTTCAGCATAGGTAATGTGTGCACTTTATGTGTACAC
1121 ATAATCATATTTAAGTTTTTTGCATAAAATAAATGCTTCTAGATGTCATGGCAGTCTTTTTAATCTTTTTATCATATGCT
1201 TTCTTGTGAATTTTTTCATGTTAAAGAGCTAAAGTCATAACATGATTACAGTCAACTCTCCATTATCTATATAAAATAGT
1281 GACTAAGCCTCAGGTTTTTAATTTTGTGATAACAAAATAACGAAGGCATGTAAGACCTGATTCTGGAGGAACATGAAATT
1361 TGTCTTTTCTCATGTCCAGAGTTCTATCCTGCCCCCACTGTCCACTGTAGGGTCATCCGCAAAGCCCTAGCAGAATGTGC
1441 TCACTCCATTTCCTTACACGTTTCTAGCATGGGTCAGAGGAAACAACATTTGTGTTATAACTTCGTCTTGATAGGCTGTA
1521 GTGTACATGGGATGTAAAACAAACAAGTGTATCAAAGGTGGATGATTCTGTTAGAGTGAAGTTTGAGAGTAAATGTCACT
1601 TACGTTTCTCATAGATAATCAAGAGTTGGCTGTGTATTGACTGAAAGATGGGTAATTATTTTAAATATGCATTTACACAC
1681 ATTTAGGTATCAGAAGATGCTTAGGGAACAATGGATACCAATGATAGAAAATGATACCTTTACAGGGGCAGAAAAATCCC
1761 CACTCTTCCTTATTGCCTCTTCAGAACCCTTTAGAAAGTATAAAATATTGCCTCCAACATGCTGAAAAAGAGTATCTATG
1841 CATAAGTATCAGAGAAGTCCCTCAAGCAATCAGTAGGTGTGTTCTATTTAGAGAGAGTTTAAAGTTCTCTTAGCATCAGA
1921 CAACTTGATTCCTAAGGTTTCCAGTGTGTCACCAACAAAAAGTGCATTGATAGGGACCTTTGTCTCTTCCTCCCTTTGAT
2001 TAATTGCCCGGCATCACAGTTTACTAGATTACCAAGTGTTACATCATATTAAATAAAATGTAGCAGAACCATCTGCATCA
2081 ATATATTCCTGTTTAGATTTTTGCAGGAGAGAAGTTAAAAGGATTTGCTCCTTGTATGATGTAAGTGGCCCACCCCAATT
2161 TTGTAACATGATGCAAGTGTCTGGCACTAAGGGAAGCAAGAGTAGGGTTGTGGAAAGACCAAGCTGATGGGGAGGGACTT
2241 GTTTACGGGAATTTTTTTAGTTTTCCTTTTCAAAGGAAAACATTAAAATCCCTTAGGAATTTGGTATTCACATCTCAGAG
2321 AACTACAACACAAAAGTGCAGACTTATATTTGAGAATTAATGTTAACCCTTTGTGTCTAGTTTGAAGCTTCTTGTATTTG
2401 TCTAAAACAACAAGCCAGAATTTTGTATCTCCTTTGATAAAAAGTGTGTATAATGTAAAGTAGTTTTGCATATTCTTGTG
2481 CTGCACATGGGCTGAATTTTTAAATTTTTTTTAAAAACTTGAAGCAGAACCTTGTAATTTGTGTAAATGACAAGTGTAAA
2561 ATCCTACCATAAAATGCTAAAAATATGCACTGTTTCAAATAAAACCAAGAAATGCAGCATTAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaUCG--GAGGUACUU-------AAGACUAc 5'
            |||  :|::|| ||       ||||||| 
Target 5' gtAGCAATTTTATAAATGTTGCTTTCTGATt 3'
612 - 642 150.00 -8.20
2
miRNA  3' gaucggAGGUACUUAAGACUAc 5'
                |:|||  |||:|||| 
Target 5' aaacagTTCAT--ATTTTGATt 3'
686 - 705 140.00 -6.50
3
miRNA  3' gaUCGGAG----GUACUU--AAGACUAc 5'
            ||||||    : | ||  || |||| 
Target 5' taAGCCTCAGGTTTTTAATTTTGTGATa 3'
1284 - 1311 124.00 -12.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN14111434 7 COSMIC
COSN30673627 29 COSMIC
COSN31504821 48 COSMIC
COSN31492079 53 COSMIC
COSN30118671 64 COSMIC
COSN20040852 67 COSMIC
COSN27671367 129 COSMIC
COSN24401086 211 COSMIC
COSN30171037 237 COSMIC
COSN31543628 248 COSMIC
COSN31589064 343 COSMIC
COSN31516178 504 COSMIC
COSN31535155 540 COSMIC
COSN31547846 552 COSMIC
COSN31583100 585 COSMIC
COSN24300393 586 COSMIC
COSN26634872 590 COSMIC
COSN31489777 696 COSMIC
COSN9040159 1180 COSMIC
COSN9040158 1270 COSMIC
COSN23694058 1537 COSMIC
COSN31595076 1568 COSMIC
COSN31534678 1608 COSMIC
COSN2028075 1768 COSMIC
COSN31542983 2053 COSMIC
COSN9040157 2158 COSMIC
COSN30176551 2446 COSMIC
COSN31590833 2481 COSMIC
COSN31589502 2504 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs764457016 1 dbSNP
rs763481640 4 dbSNP
rs1244591748 6 dbSNP
rs1322548929 7 dbSNP
rs775268934 9 dbSNP
rs375029999 14 dbSNP
rs1364499131 16 dbSNP
rs1321349658 25 dbSNP
rs759087497 28 dbSNP
rs1390822466 29 dbSNP
rs1199400541 36 dbSNP
rs1291571290 36 dbSNP
rs776165237 37 dbSNP
rs1464312296 38 dbSNP
rs1350264305 41 dbSNP
rs1166405295 42 dbSNP
rs770368303 45 dbSNP
rs746906746 50 dbSNP
rs923683726 65 dbSNP
rs978273567 67 dbSNP
rs946367099 75 dbSNP
rs573460345 78 dbSNP
rs907996304 83 dbSNP
rs190578720 112 dbSNP
rs1477384622 118 dbSNP
rs1442325389 119 dbSNP
rs563493677 119 dbSNP
rs1329837235 124 dbSNP
rs879073260 129 dbSNP
rs1214728936 134 dbSNP
rs1320341799 137 dbSNP
rs990454211 139 dbSNP
rs1035033570 145 dbSNP
rs1337328822 146 dbSNP
rs981607213 149 dbSNP
rs544511305 159 dbSNP
rs374205138 160 dbSNP
rs530687404 170 dbSNP
rs1014993357 178 dbSNP
rs1360740355 193 dbSNP
rs1424002383 198 dbSNP
rs1005012422 203 dbSNP
rs763330368 204 dbSNP
rs1027620865 207 dbSNP
rs1461556325 212 dbSNP
rs996180501 213 dbSNP
rs1432511894 222 dbSNP
rs900391977 226 dbSNP
rs561574718 230 dbSNP
rs1342690946 236 dbSNP
rs1324747476 248 dbSNP
rs574183672 253 dbSNP
rs1040706588 257 dbSNP
rs944542148 258 dbSNP
rs1335697482 278 dbSNP
rs1396321305 282 dbSNP
rs922026864 283 dbSNP
rs974845167 284 dbSNP
rs902368170 288 dbSNP
rs1487497850 290 dbSNP
rs1042117829 294 dbSNP
rs1420367098 307 dbSNP
rs1489121938 310 dbSNP
rs1191210082 320 dbSNP
rs1169753296 326 dbSNP
rs541606924 327 dbSNP
rs946435699 328 dbSNP
rs1457842985 333 dbSNP
rs572640597 348 dbSNP
rs1032380592 349 dbSNP
rs1398591565 350 dbSNP
rs1246356543 354 dbSNP
rs914994929 358 dbSNP
rs552644954 395 dbSNP
rs796887149 398 dbSNP
rs937693454 405 dbSNP
rs771932432 412 dbSNP
rs967033510 422 dbSNP
rs747931765 425 dbSNP
rs1024777249 436 dbSNP
rs1013851635 439 dbSNP
rs894871998 450 dbSNP
rs576519134 451 dbSNP
rs982126439 459 dbSNP
rs1054784126 487 dbSNP
rs1214267059 489 dbSNP
rs1262191715 490 dbSNP
rs1483382732 491 dbSNP
rs1183169351 495 dbSNP
rs1253495743 514 dbSNP
rs1308569903 515 dbSNP
rs971588633 519 dbSNP
rs778886603 530 dbSNP
rs1215841756 532 dbSNP
rs1418401010 534 dbSNP
rs556834768 542 dbSNP
rs536740842 543 dbSNP
rs898163940 554 dbSNP
rs1360051036 559 dbSNP
rs1036657721 562 dbSNP
rs370763388 570 dbSNP
rs1342188476 571 dbSNP
rs1302242710 572 dbSNP
rs1301267014 575 dbSNP
rs545444318 576 dbSNP
rs940911769 585 dbSNP
rs908131864 586 dbSNP
rs1311555483 588 dbSNP
rs576779083 591 dbSNP
rs1379103212 596 dbSNP
rs759967969 605 dbSNP
rs1441178496 611 dbSNP
rs556647099 620 dbSNP
rs1285053127 622 dbSNP
rs1372975255 623 dbSNP
rs754322458 624 dbSNP
rs933464057 626 dbSNP
rs1211824574 634 dbSNP
rs1027758368 657 dbSNP
rs1482705688 665 dbSNP
rs1441159357 666 dbSNP
rs1355062783 677 dbSNP
rs1172369840 678 dbSNP
rs1412834909 680 dbSNP
rs1394550827 682 dbSNP
rs1174559347 689 dbSNP
rs922149797 689 dbSNP
rs996149267 693 dbSNP
rs974818926 702 dbSNP
rs1174362439 707 dbSNP
rs1378900340 707 dbSNP
rs1018843657 708 dbSNP
rs1333465318 710 dbSNP
rs1398126124 712 dbSNP
rs1444509177 714 dbSNP
rs1481138521 719 dbSNP
rs185967308 722 dbSNP
rs902336585 726 dbSNP
rs1208558268 727 dbSNP
rs1298915099 731 dbSNP
rs1311308172 734 dbSNP
rs568647727 735 dbSNP
rs1198821136 736 dbSNP
rs925237244 740 dbSNP
rs1259434624 741 dbSNP
rs555244806 742 dbSNP
rs1456034242 745 dbSNP
rs1440267031 749 dbSNP
rs1278978708 762 dbSNP
rs1479288439 786 dbSNP
rs1189901854 797 dbSNP
rs71606197 798 dbSNP
rs1025330099 849 dbSNP
rs992113649 850 dbSNP
rs959454764 860 dbSNP
rs1306567662 863 dbSNP
rs1033512601 875 dbSNP
rs371161038 897 dbSNP
rs937676175 897 dbSNP
rs995176981 899 dbSNP
rs1438506299 905 dbSNP
rs1291583966 912 dbSNP
rs765415716 914 dbSNP
rs1218886400 915 dbSNP
rs898257352 923 dbSNP
rs1015184185 926 dbSNP
rs566232400 930 dbSNP
rs1004303448 932 dbSNP
rs139219491 937 dbSNP
rs1289959177 938 dbSNP
rs1453851695 946 dbSNP
rs1219928027 947 dbSNP
rs983593908 948 dbSNP
rs952202346 958 dbSNP
rs1313528727 964 dbSNP
rs1052431828 968 dbSNP
rs1477614390 969 dbSNP
rs532466528 985 dbSNP
rs368273747 989 dbSNP
rs1415977654 993 dbSNP
rs1358894162 997 dbSNP
rs1162550567 1005 dbSNP
rs933625026 1011 dbSNP
rs181493972 1014 dbSNP
rs1299804996 1017 dbSNP
rs1338045482 1019 dbSNP
rs150796130 1035 dbSNP
rs1284284558 1036 dbSNP
rs1420055905 1041 dbSNP
rs1227132762 1042 dbSNP
rs1291747654 1045 dbSNP
rs1355008664 1045 dbSNP
rs1410616634 1045 dbSNP
rs964737938 1052 dbSNP
rs530866839 1053 dbSNP
rs1472745416 1055 dbSNP
rs1258778494 1056 dbSNP
rs1488093293 1061 dbSNP
rs189762582 1062 dbSNP
rs1211006677 1066 dbSNP
rs1239317025 1071 dbSNP
rs1486333239 1071 dbSNP
rs541667374 1087 dbSNP
rs755774436 1092 dbSNP
rs1283440715 1101 dbSNP
rs1046817 1106 dbSNP
rs1384605588 1114 dbSNP
rs776988480 1126 dbSNP
rs1160251623 1127 dbSNP
rs936706289 1128 dbSNP
rs186552599 1132 dbSNP
rs1317355364 1134 dbSNP
rs1334351977 1144 dbSNP
rs1445221189 1155 dbSNP
rs967007143 1155 dbSNP
rs1313726579 1156 dbSNP
rs1378364816 1163 dbSNP
rs1020841339 1168 dbSNP
rs1010682492 1169 dbSNP
rs1308847805 1172 dbSNP
rs893665202 1172 dbSNP
rs925373401 1173 dbSNP
rs1440906529 1175 dbSNP
rs1203178074 1181 dbSNP
rs1238809468 1191 dbSNP
rs1440246334 1194 dbSNP
rs978064471 1196 dbSNP
rs945352270 1197 dbSNP
rs917954223 1199 dbSNP
rs1172911246 1206 dbSNP
rs1416718793 1217 dbSNP
rs528271341 1221 dbSNP
rs1412384837 1226 dbSNP
rs11538741 1229 dbSNP
rs906293235 1239 dbSNP
rs1358631634 1241 dbSNP
rs1400309473 1252 dbSNP
rs1288579277 1253 dbSNP
rs750117710 1255 dbSNP
rs1307645782 1260 dbSNP
rs767736955 1274 dbSNP
rs1234506008 1289 dbSNP
rs1033439069 1293 dbSNP
rs367938340 1301 dbSNP
rs1223061957 1318 dbSNP
rs540649410 1321 dbSNP
rs1459104421 1329 dbSNP
rs758343916 1334 dbSNP
rs962411711 1339 dbSNP
rs1196798822 1344 dbSNP
rs574213606 1350 dbSNP
rs1461206102 1353 dbSNP
rs1419226558 1357 dbSNP
rs1199383858 1365 dbSNP
rs1379097829 1368 dbSNP
rs61375881 1369 dbSNP
rs1048035555 1370 dbSNP
rs1015277434 1371 dbSNP
rs1190611186 1378 dbSNP
rs545896184 1382 dbSNP
rs1003992501 1386 dbSNP
rs751919278 1414 dbSNP
rs1259036380 1417 dbSNP
rs1325946752 1418 dbSNP
rs1329668944 1419 dbSNP
rs890776585 1420 dbSNP
rs1185620037 1425 dbSNP
rs1279131385 1427 dbSNP
rs576844604 1428 dbSNP
rs556954586 1436 dbSNP
rs1250821974 1439 dbSNP
rs775482029 1440 dbSNP
rs965123387 1446 dbSNP
rs911999588 1448 dbSNP
rs765321838 1459 dbSNP
rs543043240 1469 dbSNP
rs575260235 1481 dbSNP
rs1263538548 1486 dbSNP
rs1167720670 1489 dbSNP
rs536919932 1489 dbSNP
rs989393990 1490 dbSNP
rs957856154 1497 dbSNP
rs375099426 1499 dbSNP
rs904046267 1501 dbSNP
rs866156927 1504 dbSNP
rs776766455 1505 dbSNP
rs945515697 1506 dbSNP
rs1004274324 1508 dbSNP
rs917871674 1522 dbSNP
rs1341100799 1525 dbSNP
rs1245460045 1528 dbSNP
rs1056475715 1531 dbSNP
rs1291944258 1540 dbSNP
rs1221543447 1547 dbSNP
rs1357152283 1547 dbSNP
rs1440633684 1567 dbSNP
rs937895986 1570 dbSNP
rs1489068901 1585 dbSNP
rs926558962 1602 dbSNP
rs973982986 1603 dbSNP
rs1188978894 1604 dbSNP
rs1423935433 1604 dbSNP
rs180880998 1604 dbSNP
rs1048006605 1619 dbSNP
rs930917118 1622 dbSNP
rs899423117 1623 dbSNP
rs1288462307 1632 dbSNP
rs1380134560 1648 dbSNP
rs1370880859 1650 dbSNP
rs908414583 1651 dbSNP
rs1397901764 1652 dbSNP
rs1310646732 1653 dbSNP
rs1039588138 1654 dbSNP
rs535296956 1655 dbSNP
rs943562639 1658 dbSNP
rs1355521752 1668 dbSNP
rs572694100 1669 dbSNP
rs759713634 1676 dbSNP
rs955155714 1677 dbSNP
rs1263430896 1678 dbSNP
rs867672482 1685 dbSNP
rs776879472 1686 dbSNP
rs1483368029 1691 dbSNP
rs1029710924 1693 dbSNP
rs189296062 1697 dbSNP
rs1444570390 1700 dbSNP
rs989446262 1724 dbSNP
rs1382578321 1729 dbSNP
rs1158798142 1732 dbSNP
rs184976330 1732 dbSNP
rs1360034000 1745 dbSNP
rs957907571 1748 dbSNP
rs573126270 1768 dbSNP
rs964936828 1772 dbSNP
rs1033621775 1773 dbSNP
rs1405388407 1779 dbSNP
rs570035398 1788 dbSNP
rs1332011766 1798 dbSNP
rs980986945 1801 dbSNP
rs1337335283 1807 dbSNP
rs771106164 1808 dbSNP
rs1017853234 1810 dbSNP
rs1001146551 1812 dbSNP
rs1250641453 1815 dbSNP
rs747959298 1816 dbSNP
rs1042562876 1825 dbSNP
rs1004006997 1830 dbSNP
rs567977455 1831 dbSNP
rs1026618134 1833 dbSNP
rs995174322 1834 dbSNP
rs1010031722 1841 dbSNP
rs561173218 1842 dbSNP
rs1440423395 1843 dbSNP
rs899385489 1858 dbSNP
rs1039315850 1859 dbSNP
rs896581884 1864 dbSNP
rs192432580 1869 dbSNP
rs890668114 1882 dbSNP
rs1052272648 1890 dbSNP
rs1280579437 1895 dbSNP
rs945426899 1898 dbSNP
rs1439864444 1912 dbSNP
rs1297402374 1913 dbSNP
rs913987924 1914 dbSNP
rs1406418339 1915 dbSNP
rs1281037941 1923 dbSNP
rs1322365448 1925 dbSNP
rs1218782250 1931 dbSNP
rs937992960 1950 dbSNP
rs1299188319 1952 dbSNP
rs1462057457 1954 dbSNP
rs926653710 1961 dbSNP
rs536247323 1973 dbSNP
rs1171428198 1976 dbSNP
rs1204392324 1978 dbSNP
rs189385163 1982 dbSNP
rs1489699129 1984 dbSNP
rs768643662 1986 dbSNP
rs1197670116 1999 dbSNP
rs1268531227 2000 dbSNP
rs1478260816 2007 dbSNP
rs989418651 2009 dbSNP
rs548087268 2010 dbSNP
rs1408174496 2011 dbSNP
rs1169599188 2023 dbSNP
rs1350378074 2024 dbSNP
rs936690930 2031 dbSNP
rs941319236 2032 dbSNP
rs908334401 2033 dbSNP
rs1400171213 2038 dbSNP
rs982647303 2040 dbSNP
rs1271461239 2041 dbSNP
rs955272026 2046 dbSNP
rs749247204 2053 dbSNP
rs779665600 2054 dbSNP
rs980738035 2059 dbSNP
rs1220790691 2061 dbSNP
rs1291419462 2062 dbSNP
rs1488744843 2066 dbSNP
rs1196070789 2069 dbSNP
rs746902787 2073 dbSNP
rs755721394 2077 dbSNP
rs917793856 2078 dbSNP
rs528332652 2079 dbSNP
rs1348905287 2080 dbSNP
rs1032712771 2081 dbSNP
rs559142188 2094 dbSNP
rs1414533157 2095 dbSNP
rs1305843642 2106 dbSNP
rs1446357515 2107 dbSNP
rs1001115432 2111 dbSNP
rs868302287 2136 dbSNP
rs773042208 2137 dbSNP
rs1335480549 2141 dbSNP
rs1291460730 2146 dbSNP
rs968297209 2148 dbSNP
rs1021512215 2154 dbSNP
rs1343041200 2157 dbSNP
rs867439847 2162 dbSNP
rs1393633391 2163 dbSNP
rs1429494719 2171 dbSNP
rs76024403 2172 dbSNP
rs867328244 2174 dbSNP
rs1244328325 2177 dbSNP
rs1056537749 2178 dbSNP
rs1002277286 2193 dbSNP
rs905197930 2200 dbSNP
rs1354809899 2203 dbSNP
rs868463689 2212 dbSNP
rs1433520205 2215 dbSNP
rs771857090 2228 dbSNP
rs1446635313 2234 dbSNP
rs55863809 2246 dbSNP
rs563236746 2247 dbSNP
rs1446376361 2252 dbSNP
rs1047314489 2259 dbSNP
rs777860343 2259 dbSNP
rs963729643 2271 dbSNP
rs1440122741 2283 dbSNP
rs543459938 2289 dbSNP
rs1362997193 2291 dbSNP
rs574495418 2292 dbSNP
rs1007842720 2302 dbSNP
rs890709848 2307 dbSNP
rs1420768707 2322 dbSNP
rs1255266126 2325 dbSNP
rs560834013 2328 dbSNP
rs375012748 2329 dbSNP
rs975152895 2336 dbSNP
rs1009707649 2346 dbSNP
rs892524731 2346 dbSNP
rs3775078 2347 dbSNP
rs1203614136 2349 dbSNP
rs1350486588 2352 dbSNP
rs1265102797 2366 dbSNP
rs925574607 2374 dbSNP
rs978437525 2376 dbSNP
rs1460075945 2379 dbSNP
rs780879042 2389 dbSNP
rs116090437 2394 dbSNP
rs1242529529 2402 dbSNP
rs926685565 2409 dbSNP
rs554567330 2414 dbSNP
rs1230894424 2416 dbSNP
rs745975968 2418 dbSNP
rs949298197 2428 dbSNP
rs1172756716 2433 dbSNP
rs1430949728 2436 dbSNP
rs1021187595 2439 dbSNP
rs1467814528 2439 dbSNP
rs1175087946 2444 dbSNP
rs62307873 2448 dbSNP
rs751950885 2449 dbSNP
rs367804704 2450 dbSNP
rs982589688 2451 dbSNP
rs960896090 2460 dbSNP
rs1293163766 2463 dbSNP
rs1437601400 2469 dbSNP
rs1285472298 2470 dbSNP
rs1035633997 2484 dbSNP
rs951222748 2493 dbSNP
rs1223041797 2494 dbSNP
rs1258723695 2502 dbSNP
rs1002203680 2504 dbSNP
rs184686258 2506 dbSNP
rs193142276 2512 dbSNP
rs1005528560 2513 dbSNP
rs1314389855 2513 dbSNP
rs1437068517 2513 dbSNP
rs964040143 2513 dbSNP
rs1398567487 2523 dbSNP
rs1198084629 2525 dbSNP
rs887132585 2529 dbSNP
rs1046963799 2541 dbSNP
rs933936448 2543 dbSNP
rs1158959918 2550 dbSNP
rs1396364490 2556 dbSNP
rs901003369 2566 dbSNP
rs1406384213 2568 dbSNP
rs764447774 2569 dbSNP
rs1305324514 2584 dbSNP
rs771004947 2584 dbSNP
rs1431169436 2585 dbSNP
rs1404488518 2589 dbSNP
rs1039561288 2592 dbSNP
rs1278949634 2592 dbSNP
rs942397755 2616 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gaUCG--GAGGUACUUAAGACUAc 5'
            |||  :|::|| ||| :|| | 
Target 5' guAGCAAUUUUAUAAAUGUUGCUu 3'
12 - 35
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000303538.8 | 3UTR | AAAGUGAUGUGGUAGCAAUUUUAUAAAUGUUGCUUUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
BLCA 0.844 0.02 0.829 0.02 6 Click to see details
STAD -0.994 0.03 -1.000 0.5 3 Click to see details
BRCA -0.071 0.35 0.004 0.49 31 Click to see details
LUSC 0.099 0.36 0.104 0.36 15 Click to see details
HNSC -0.07 0.41 -0.064 0.41 14 Click to see details
UCEC -0.082 0.47 -0.500 0.33 3 Click to see details
LIHC 0.04 0.48 -0.200 0.4 4 Click to see details
LIHC 0.04 0.48 -0.200 0.4 4 Click to see details
LIHC 0.04 0.48 -0.200 0.4 4 Click to see details
LIHC 0.04 0.48 -0.200 0.4 4 Click to see details
LIHC 0.04 0.48 -0.200 0.4 4 Click to see details
LIHC 0.04 0.48 -0.200 0.4 4 Click to see details
LIHC 0.04 0.48 -0.200 0.4 4 Click to see details
80 hsa-miR-2115-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057089 DDIT4 DNA damage inducible transcript 4 2 2
MIRT071216 FCF1 FCF1, rRNA-processing protein 2 2
MIRT226901 RAD23B RAD23 homolog B, nucleotide excision repair protein 2 2
MIRT235961 BACH1 BTB domain and CNC homolog 1 2 2
MIRT294569 ZNF460 zinc finger protein 460 2 4
MIRT321046 RAC1 Rac family small GTPase 1 2 4
MIRT359666 NUS1 NUS1 dehydrodolichyl diphosphate synthase subunit 2 8
MIRT366451 KLHL15 kelch like family member 15 2 2
MIRT405375 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT441794 TCEAL5 transcription elongation factor A like 5 2 2
MIRT443295 TCEAL3 transcription elongation factor A like 3 2 2
MIRT455275 DDX39B DExD-box helicase 39B 2 2
MIRT458523 C5orf22 chromosome 5 open reading frame 22 2 2
MIRT464960 TWIST1 twist family bHLH transcription factor 1 2 2
MIRT466848 STX6 syntaxin 6 2 2
MIRT469252 RHOB ras homolog family member B 2 2
MIRT469825 RAB14 RAB14, member RAS oncogene family 2 4
MIRT470047 PTGFRN prostaglandin F2 receptor inhibitor 2 2
MIRT471420 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT472024 NPM1 nucleophosmin 1 2 2
MIRT484156 CENPN centromere protein N 2 2
MIRT485490 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT490462 PROSER2 proline and serine rich 2 2 2
MIRT493069 MTCH1 mitochondrial carrier 1 2 2
MIRT493573 HSP90AA1 heat shock protein 90 alpha family class A member 1 2 8
MIRT494919 NDUFC2-KCTD14 NDUFC2-KCTD14 readthrough 2 2
MIRT500439 ZMAT3 zinc finger matrin-type 3 2 2
MIRT500931 SRPR SRP receptor alpha subunit 2 4
MIRT501551 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT501809 NEURL1B neuralized E3 ubiquitin protein ligase 1B 2 2
MIRT502415 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT506504 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT507861 CCNE2 cyclin E2 2 2
MIRT510511 YOD1 YOD1 deubiquitinase 2 6
MIRT516073 RAB42 RAB42, member RAS oncogene family 2 2
MIRT519030 KYNU kynureninase 2 6
MIRT521762 PPIL1 peptidylprolyl isomerase like 1 2 4
MIRT522898 KCNJ3 potassium voltage-gated channel subfamily J member 3 2 4
MIRT527370 MGARP mitochondria localized glutamic acid rich protein 2 2
MIRT530691 C8orf46 chromosome 8 open reading frame 46 2 2
MIRT530867 TRUB1 TruB pseudouridine synthase family member 1 2 2
MIRT531832 MTPAP mitochondrial poly(A) polymerase 2 4
MIRT533035 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT533165 WIPF2 WAS/WASL interacting protein family member 2 2 2
MIRT533464 TRIM71 tripartite motif containing 71 2 2
MIRT534331 SHCBP1 SHC binding and spindle associated 1 2 2
MIRT539372 ADSS adenylosuccinate synthase 2 6
MIRT545951 ZBTB10 zinc finger and BTB domain containing 10 2 2
MIRT553283 TSR1 TSR1, ribosome maturation factor 2 2
MIRT553532 TMEM185B transmembrane protein 185B 2 4
MIRT556480 LIPA lipase A, lysosomal acid type 2 2
MIRT556975 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT557697 GATA6 GATA binding protein 6 2 2
MIRT558901 CCDC58 coiled-coil domain containing 58 2 2
MIRT559224 BLMH bleomycin hydrolase 2 2
MIRT559827 SLPI secretory leukocyte peptidase inhibitor 2 2
MIRT563435 SLC3A2 solute carrier family 3 member 2 2 2
MIRT569270 PCDH11X protocadherin 11 X-linked 2 2
MIRT571386 JKAMP JNK1/MAPK8-associated membrane protein 2 2
MIRT572567 AFF1 AF4/FMR2 family member 1 2 2
MIRT610400 AR androgen receptor 2 2
MIRT611058 ZNF621 zinc finger protein 621 2 2
MIRT635118 TMEM233 transmembrane protein 233 2 2
MIRT641617 DEFB118 defensin beta 118 2 2
MIRT642146 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT647295 C8orf33 chromosome 8 open reading frame 33 2 2
MIRT648155 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT652780 TENM3 teneurin transmembrane protein 3 2 2
MIRT657356 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT658718 ELN elastin 2 2
MIRT662441 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT665302 ZBTB38 zinc finger and BTB domain containing 38 2 2
MIRT699898 RUNX1 runt related transcription factor 1 2 2
MIRT700921 PDS5A PDS5 cohesin associated factor A 2 2
MIRT700992 PDE3A phosphodiesterase 3A 2 2
MIRT707397 DCAF4L1 DDB1 and CUL4 associated factor 4 like 1 2 2
MIRT711895 INSIG2 insulin induced gene 2 2 2
MIRT712072 XRCC5 X-ray repair cross complementing 5 2 2
MIRT716121 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT724470 SMAD2 SMAD family member 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-2115 Docetaxel+Cisplatin+5-Fluorouracil sensitive tissue (hypopharyngeal squamous cell carcinoma)
hsa-mir-2115 Decitabine 451668 approved sensitive tissue (esopheageal cancer)
hsa-miR-2115-3p Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-2115-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-2115-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-2115-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-2115-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-2115-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-2115-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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