pre-miRNA Information
pre-miRNA hsa-mir-6819   
Genomic Coordinates chr22: 36286847 - 36286907
Description Homo sapiens miR-6819 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6819-3p
Sequence 41| AAGCCUCUGUCCCCACCCCAG |61
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1279530967 2 dbSNP
rs967579979 3 dbSNP
rs776891214 4 dbSNP
rs771166635 8 dbSNP
rs747037324 9 dbSNP
rs879248090 11 dbSNP
rs1485325191 12 dbSNP
rs778157316 16 dbSNP
Putative Targets

Gene Information
Gene Symbol NR4A3   
Synonyms CHN, CSMF, MINOR, NOR1, TEC
Description nuclear receptor subfamily 4 group A member 3
Transcript NM_006981   
Other Transcripts NM_173199 , NM_173200   
Expression
Putative miRNA Targets on NR4A3
3'UTR of NR4A3
(miRNA target sites are highlighted)
>NR4A3|NM_006981|3'UTR
   1 TCAGGAGCAGTGGAGCAGTGAGCTGCCTCCTCTCCTAGCACCTGCTTGCTACGCAGCAAAGGGATAGGTTTGGAAACCTA
  81 TCATTTCCTGTCCTTCCTTAAGAGGAAAAGCAGCTCCTGTAGAAAGCAAAGACTTTCTTTTTTTTCTGGCTCTTTTCCTT
 161 ACAACCTAAAGCCAGAAAACTTGCAGAGTATTGTGTTGGGGTTGTGTTTTATATTTAGGCATTGGGGGATGGGGTGGGAG
 241 GGGGTTATAGTTCATGAGGGTTTTCTAAGAAATTGCTAACAAAGCACTTTTGGACAATGCTATCCCAGCAGGAAAAAAAA
 321 GGATAATATAACTGTTTTAAAACTCTTTCTGGGGAATCCAATTATAGTTGCTTTGTATTTAAAAACAAGAACAGCCAAGG
 401 GTTGTTCGCCAGGGTAGGATGTGTCTTAAAGATTGGTCCCTTGAAAATATGCTTCCTGTATCAAAGGTACGTATGTGGTG
 481 CAAACAAGGCAGAAACTTCCTTTTAATTTCCTTCTTCCTTTATTTTAACAAATGGTGAAAGATGGAGGATTACCTACAAA
 561 TCAGACATGGCAAAACAATAATGGCTGTTTGCTTCCATAAACAAGTGCAATTTTTTAAAGTGCTGTCTTACTAAGTCTTG
 641 TTTATTAACTCTCCTTTATTCTATATGGAAATAAAAAGGAGGCAGTCATGTTAGCAAATGACACGTTAATATCCCTAGCA
 721 GAGGCTGTGTTCACCTTCCCTGTCGATCCCTTCTGAGGTATGGCCCATCCAAGACTTTTAGGCCATTCTTGATGGAACCA
 801 GATCCCTGCCCTGACTGTCCAGCTATCCTGAAAGTGGATCAGATTATAAACTGGATTACATGTAACTGTTTTGGTTGTGT
 881 TCTATCAACCCCACCAGAGTTCCCTAAACTTGCTTCAGTTATAGTAACTGACTGGTATATTCATTCAGAAGCGCCATAAG
 961 TCAGTTGAGTATTTGATCCCTAGATAAGAACATGCAAATCAGCAGGAACTGGTCATACAGGGTAAGCACCAGGGACAATA
1041 AGGATTTTTATAGATATAATTTAATTTTTGTTATTGGTTAAGGAGACAATTTTGGAGAGCAAGCAAATCTTTTTAAAAAA
1121 TAGTATGAATGTGAATACTAGAAAAGATTTAAAAAATAGTATGAGTGTGAGTACTAGGAAGGATTAGTGGGCTGCGTTTC
1201 AACATTCCGTGTTCGTACTCCCTTTTGTATGTTTCTACTGTTAATGCCATATTACTATGAGATAATTTGTTGCATAGTGT
1281 CCTTATTTGTATAAACATTTGTATGCACGTTATATTGTAATAGCTTTGCCTGTATTTATTGCAAGACCACCAGCTCCTGG
1361 AAGCTGAGTTACAGAGTAATTAAATGGGGTGTTCACAGTGACTTGGATACACCAATTAGAAATTAAATAAGCAAATATAT
1441 ATATATATATAAATATAGCAGGTTACATATATATATTTATAATGTGTCTTTTTATTAACCATTTGTACAATAAATGTCAC
1521 TTCCCATGCCGTTATTTTATGGTTCATTTGCAGTGACTTTTAAGGCAGTACTGTTTAGCACTTTGATATTAAAATTTTGC
1601 TTATGTTTTGCTAAATTCGAATAATGTTTGAAGATTTTTAGGTCTAAAAGTCTTTATATTATATACTCTGTATCAAGTCA
1681 AAATATCTTTGGCCATTTTGCTAAGAAACAAACTTTGAATGTCAAACTGATGTCACAGTAGTTTTTGTTAGCTTTAAATC
1761 ATTTTTGCTTTAGTCTTTTTAAAGGAAAATAACAAAACTATGCTGTTTATATTGTCATTAAATTATACAATCAAACAAAT
1841 GCCAAATGAATTGCCTAATTGCTGCAAAGTATAACCCAGATAGGAAATCATATGTTTTTTTCCAAGAGTCATTCTAATAT
1921 TTGATTATGTTATGTGTGCTTTTATGAAAGATTGTTATTTTTATATATCAAGATGATAGAACCTGGAATGTTAGGATTTT
2001 GAAATGTTAGACTTGGAAGGGGCCTGGTCTGTCAACTAGTCCAACCCCTTAAAATTCATAGAGGAGCAAACTGGGGCCCA
2081 TTGAAGGGTGAAGAGTTACTCAAGGTCAAACAGCTGGTAACAGAATCAAGACTAAGACCTAATTTACCTTTCCATACTCT
2161 TTTTTTTTCTCAACTTCATCTATATAAAATCAGGCTTTTAAACATAACCACTAATATTTACCTGAAGATAACCATGAGTA
2241 AAGTATACTTTTGCATTAATTTTTTGAGCTTATATGCAAACATAATAAATATTATTAAATATCAGGAAAGCTAACATTTC
2321 ATACAAGATAGCTTCAGACCAAATTCAAATTGAATTTGAATAAATTAGAAATACTGTGCATACATAACCTTCTTGTGCAC
2401 CATGAGTATTTGGAAAGTTAATCCTTGTTTTTGTCGTGTCTATAAAGGAAGAACAAAACAAAATAAAAACAGAGCCCTAG
2481 AGAAATGCTGTTACTTTTTATTTTTACACCCATCAGATTTAAGGAAAAGACTTTTTAGCCATTATAATCTAGTGGTTGGA
2561 AGGAATGAAGAAGCTTTTTTAGTAATAGGTCCAGATATGAGTGCTAAAAATAAAGATGATAGCATGTTCTTCTGTCTTCC
2641 ATAGTTATTACAACTATGAGAGCCTCCCAAGTCATCTTATCAACTCAACTCCCTTTTTTTTGTCTTAATGTTGCACATAA
2721 GTTTATACAGAGTGGATGACCACACTAGCACAGAAGAGAACAACATGTATTAAAGCAGGTGATTCCTCCCCTTGGCGGGA
2801 GAGCTCTCTCAGTGTGAACATGCCTTCTGTGGGCGGAAATCAGGAAGCCACCAGCTGTTAATGGAGAGTGCCTTGCTTTT
2881 ATTTCAGACAGCAGAGTTTTCCAAAGTTTCTCTGCTCCTCTAACAGCATTGCTCTTTAGTGTGTGTTAACCTGTGGTTTG
2961 AAAGAAATGCTCTTGTACATTAACAATGTAAATTTAAATGATTAAATTACATTTTATCAATGGCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaccccaccccUGUCUCCGAa 5'
                     :|||||||| 
Target 5' taatatccctaGCAGAGGCTg 3'
707 - 727 146.00 -12.90
2
miRNA  3' gaCCCCACCCCUGUCUCCGAa 5'
            ||||| |||| :|:||:| 
Target 5' atGGGGT-GGGA-GGGGGTTa 3'
229 - 247 121.00 -26.60
3
miRNA  3' gacCCCACC--CCU---GUCUCCGAa 5'
             || |||  |||    ||| ||| 
Target 5' agtGGTTGGAAGGAATGAAGAAGCTt 3'
2551 - 2576 120.00 -12.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN8519718 8 COSMIC
COSN30448145 14 COSMIC
COSN31583009 23 COSMIC
COSN30166392 38 COSMIC
COSN28707444 42 COSMIC
COSN31489512 42 COSMIC
COSN30479009 62 COSMIC
COSN30177430 85 COSMIC
COSN30110048 127 COSMIC
COSN30101474 136 COSMIC
COSN31567632 144 COSMIC
COSN30494328 146 COSMIC
COSN31520724 151 COSMIC
COSN30114940 153 COSMIC
COSN5117188 241 COSMIC
COSN31535339 318 COSMIC
COSN31602621 321 COSMIC
COSN30540917 346 COSMIC
COSN31480561 350 COSMIC
COSN30166935 376 COSMIC
COSN31486562 463 COSMIC
COSN8113994 472 COSMIC
COSN31480602 493 COSMIC
COSN30157920 565 COSMIC
COSN26583808 606 COSMIC
COSN9691348 703 COSMIC
COSN31583266 714 COSMIC
COSN30175682 914 COSMIC
COSN31544042 1068 COSMIC
COSN31566684 1089 COSMIC
COSN8113995 1100 COSMIC
COSN20106404 1112 COSMIC
COSN28198315 1121 COSMIC
COSN8519719 1122 COSMIC
COSN31582886 1134 COSMIC
COSN23987788 1154 COSMIC
COSN26575548 1290 COSMIC
COSN31489806 1295 COSMIC
COSN19664038 1364 COSMIC
COSN31519933 1512 COSMIC
COSN31963082 1531 COSMIC
COSN31555904 1532 COSMIC
COSN16124206 1619 COSMIC
COSN31514437 1621 COSMIC
COSN15662578 1705 COSMIC
COSN31963083 1708 COSMIC
COSN31541686 1890 COSMIC
COSN31515929 1980 COSMIC
COSN31521279 1988 COSMIC
COSN2301580 2033 COSMIC
COSN29678798 2169 COSMIC
COSN31479565 2172 COSMIC
COSN31517927 2319 COSMIC
COSN31530106 2369 COSMIC
COSN31610522 2543 COSMIC
COSN31544367 2581 COSMIC
COSN31490522 2601 COSMIC
COSN31549551 2667 COSMIC
COSN20592786 2728 COSMIC
COSN9691349 2792 COSMIC
COSN31482596 2797 COSMIC
COSN30172314 2828 COSMIC
COSN26563278 2876 COSMIC
COSN27036024 2935 COSMIC
COSN24540383 2951 COSMIC
COSN31516800 2995 COSMIC
COSN31520166 2996 COSMIC
COSN26642484 3025 COSMIC
rs147117699 1436 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1460335649 3 dbSNP
rs769116508 7 dbSNP
rs374457804 16 dbSNP
rs747677607 17 dbSNP
rs143681814 24 dbSNP
rs371087624 34 dbSNP
rs762669343 36 dbSNP
rs766148131 40 dbSNP
rs386736764 49 dbSNP
rs759338125 49 dbSNP
rs776852845 53 dbSNP
rs968207822 54 dbSNP
rs1351804528 58 dbSNP
rs761805685 60 dbSNP
rs979165335 63 dbSNP
rs1263026706 67 dbSNP
rs1240332788 81 dbSNP
rs1312013686 86 dbSNP
rs1299607710 88 dbSNP
rs1231690677 91 dbSNP
rs1372710706 91 dbSNP
rs187750944 117 dbSNP
rs1233146897 130 dbSNP
rs1290593197 132 dbSNP
rs1454220332 135 dbSNP
rs1376904621 138 dbSNP
rs1017355292 140 dbSNP
rs1280645691 147 dbSNP
rs1314286035 149 dbSNP
rs1214164318 150 dbSNP
rs1260641536 151 dbSNP
rs1486479809 153 dbSNP
rs934954139 166 dbSNP
rs1395922019 181 dbSNP
rs748372726 182 dbSNP
rs1210604111 185 dbSNP
rs1053393524 186 dbSNP
rs1463619831 196 dbSNP
rs922832120 202 dbSNP
rs1206285702 205 dbSNP
rs1453963455 211 dbSNP
rs765264412 223 dbSNP
rs148084500 225 dbSNP
rs1348966287 231 dbSNP
rs1427592371 231 dbSNP
rs1227160971 236 dbSNP
rs1434677180 239 dbSNP
rs1324213439 247 dbSNP
rs1156748561 256 dbSNP
rs1344468338 257 dbSNP
rs1454261055 260 dbSNP
rs1382765026 271 dbSNP
rs750954005 274 dbSNP
rs763432145 276 dbSNP
rs544064985 285 dbSNP
rs141819687 286 dbSNP
rs1447860502 288 dbSNP
rs1439585026 298 dbSNP
rs1374913839 304 dbSNP
rs1303671764 305 dbSNP
rs749439730 308 dbSNP
rs1193980832 309 dbSNP
rs1254694074 313 dbSNP
rs201201454 313 dbSNP
rs925917715 315 dbSNP
rs1486216658 316 dbSNP
rs936025000 329 dbSNP
rs1204063187 343 dbSNP
rs1337026008 344 dbSNP
rs1252621473 348 dbSNP
rs1227522979 352 dbSNP
rs1056244384 354 dbSNP
rs533076506 359 dbSNP
rs1291384659 365 dbSNP
rs1416504663 370 dbSNP
rs1355900309 376 dbSNP
rs546915852 386 dbSNP
rs1222352877 406 dbSNP
rs1307158911 408 dbSNP
rs191744853 409 dbSNP
rs1408492781 412 dbSNP
rs1306749705 413 dbSNP
rs915996403 417 dbSNP
rs1168643969 422 dbSNP
rs1457481259 424 dbSNP
rs1366743412 426 dbSNP
rs1190748439 429 dbSNP
rs1317993604 431 dbSNP
rs950215389 433 dbSNP
rs1251620821 434 dbSNP
rs1038396875 436 dbSNP
rs1180464372 451 dbSNP
rs897177613 466 dbSNP
rs897688610 468 dbSNP
rs994118111 471 dbSNP
rs993383344 472 dbSNP
rs558443104 474 dbSNP
rs773563245 476 dbSNP
rs1214464442 482 dbSNP
rs1335380351 486 dbSNP
rs1287565830 495 dbSNP
rs1248669368 497 dbSNP
rs1337251350 501 dbSNP
rs751866209 511 dbSNP
rs960602464 512 dbSNP
rs1386387712 515 dbSNP
rs1012130193 531 dbSNP
rs1023889920 538 dbSNP
rs1175209791 541 dbSNP
rs1167173573 544 dbSNP
rs1462488992 545 dbSNP
rs528900208 562 dbSNP
rs1049013460 587 dbSNP
rs148107011 587 dbSNP
rs967883430 588 dbSNP
rs200925782 589 dbSNP
rs1157278719 599 dbSNP
rs1407010048 610 dbSNP
rs1471371773 612 dbSNP
rs1233769918 618 dbSNP
rs1182133815 621 dbSNP
rs1450666857 624 dbSNP
rs549072436 626 dbSNP
rs566796829 629 dbSNP
rs979602672 632 dbSNP
rs1215018541 641 dbSNP
rs1468486284 643 dbSNP
rs568957196 652 dbSNP
rs1161254654 654 dbSNP
rs1352614721 667 dbSNP
rs1279896011 671 dbSNP
rs779237269 679 dbSNP
rs1415658966 683 dbSNP
rs537967847 684 dbSNP
rs1369044493 686 dbSNP
rs1017721289 690 dbSNP
rs558064941 699 dbSNP
rs368353548 700 dbSNP
rs1323647497 701 dbSNP
rs975743730 702 dbSNP
rs1351197062 704 dbSNP
rs1439596199 705 dbSNP
rs997243575 706 dbSNP
rs922882545 708 dbSNP
rs967532569 710 dbSNP
rs934245539 716 dbSNP
rs985693350 718 dbSNP
rs145564870 722 dbSNP
rs1453497489 724 dbSNP
rs941511216 726 dbSNP
rs754719366 729 dbSNP
rs561216654 739 dbSNP
rs897242477 745 dbSNP
rs780723356 746 dbSNP
rs1240974245 762 dbSNP
rs1213608241 764 dbSNP
rs1448647098 765 dbSNP
rs752353003 770 dbSNP
rs138101219 771 dbSNP
rs930011476 774 dbSNP
rs796755519 775 dbSNP
rs1056397091 779 dbSNP
rs1233905067 785 dbSNP
rs957898184 786 dbSNP
rs1305923239 796 dbSNP
rs113215065 811 dbSNP
rs1364594292 812 dbSNP
rs1292134045 818 dbSNP
rs1268466526 819 dbSNP
rs896445016 826 dbSNP
rs1204056119 828 dbSNP
rs1334012710 840 dbSNP
rs1433263371 843 dbSNP
rs1012596059 854 dbSNP
rs1377602306 874 dbSNP
rs1233713431 875 dbSNP
rs1483252632 877 dbSNP
rs1184156860 883 dbSNP
rs1023523604 885 dbSNP
rs1476070543 894 dbSNP
rs903712216 900 dbSNP
rs1045870623 915 dbSNP
rs1163279966 919 dbSNP
rs919056216 923 dbSNP
rs1000685656 929 dbSNP
rs554448402 933 dbSNP
rs533941649 936 dbSNP
rs887691632 948 dbSNP
rs975795947 953 dbSNP
rs1030005636 954 dbSNP
rs746039187 957 dbSNP
rs573667556 972 dbSNP
rs1362686364 974 dbSNP
rs1412063881 981 dbSNP
rs1413432613 996 dbSNP
rs953052339 1008 dbSNP
rs113803029 1014 dbSNP
rs1313848491 1020 dbSNP
rs911466784 1022 dbSNP
rs1167808460 1057 dbSNP
rs1411174780 1058 dbSNP
rs1419552294 1060 dbSNP
rs941550791 1061 dbSNP
rs1285991794 1064 dbSNP
rs974201798 1067 dbSNP
rs775774430 1080 dbSNP
rs142576300 1084 dbSNP
rs1231413261 1087 dbSNP
rs930062302 1101 dbSNP
rs1344587849 1105 dbSNP
rs35553902 1108 dbSNP
rs3837280 1108 dbSNP
rs67738416 1109 dbSNP
rs372929178 1110 dbSNP
rs1232054188 1111 dbSNP
rs869241769 1111 dbSNP
rs111823615 1113 dbSNP
rs957632684 1116 dbSNP
rs1294369473 1121 dbSNP
rs1485279948 1124 dbSNP
rs1056447229 1127 dbSNP
rs992176333 1128 dbSNP
rs1296121177 1130 dbSNP
rs1022944658 1139 dbSNP
rs1354657353 1143 dbSNP
rs756703279 1153 dbSNP
rs1131339 1154 dbSNP
rs1459874441 1155 dbSNP
rs948065108 1162 dbSNP
rs1165492976 1163 dbSNP
rs1418310779 1166 dbSNP
rs1131340 1167 dbSNP
rs1405472737 1172 dbSNP
rs1179212823 1174 dbSNP
rs1481070856 1196 dbSNP
rs981484112 1197 dbSNP
rs1453004087 1203 dbSNP
rs1469834334 1204 dbSNP
rs1390337195 1208 dbSNP
rs1274375532 1209 dbSNP
rs545532418 1210 dbSNP
rs903767327 1216 dbSNP
rs749273801 1222 dbSNP
rs1375254963 1250 dbSNP
rs929409030 1255 dbSNP
rs1324726312 1256 dbSNP
rs1438097876 1258 dbSNP
rs1395976915 1273 dbSNP
rs1326533525 1274 dbSNP
rs1030847716 1292 dbSNP
rs1452931962 1296 dbSNP
rs1343268308 1297 dbSNP
rs1161005455 1309 dbSNP
rs770984546 1310 dbSNP
rs182652116 1315 dbSNP
rs1191929907 1318 dbSNP
rs1336702590 1321 dbSNP
rs997287560 1322 dbSNP
rs1344015257 1342 dbSNP
rs1430025225 1345 dbSNP
rs774948407 1351 dbSNP
rs1367555202 1368 dbSNP
rs1232405746 1378 dbSNP
rs943276310 1379 dbSNP
rs1302997729 1390 dbSNP
rs1347540550 1392 dbSNP
rs1302269805 1393 dbSNP
rs1231581315 1405 dbSNP
rs1039376947 1411 dbSNP
rs1301334463 1416 dbSNP
rs953193806 1424 dbSNP
rs1381637101 1433 dbSNP
rs147117699 1435 dbSNP
rs1491502103 1435 dbSNP
rs34711370 1435 dbSNP
rs766310817 1435 dbSNP
rs1200885176 1442 dbSNP
rs1172051476 1443 dbSNP
rs985798080 1444 dbSNP
rs1280649950 1445 dbSNP
rs1018975167 1448 dbSNP
rs1445219167 1452 dbSNP
rs573693926 1453 dbSNP
rs1426740176 1456 dbSNP
rs1264499836 1457 dbSNP
rs577777673 1459 dbSNP
rs1248131599 1463 dbSNP
rs1208343919 1480 dbSNP
rs1450902849 1483 dbSNP
rs918772167 1501 dbSNP
rs951519875 1517 dbSNP
rs1226073803 1527 dbSNP
rs1394158755 1529 dbSNP
rs1324121116 1531 dbSNP
rs1478557838 1532 dbSNP
rs902264456 1537 dbSNP
rs574493884 1540 dbSNP
rs1174682386 1556 dbSNP
rs1416924763 1561 dbSNP
rs186920793 1573 dbSNP
rs1033165745 1577 dbSNP
rs893315261 1581 dbSNP
rs745661256 1582 dbSNP
rs1167499946 1585 dbSNP
rs560471054 1592 dbSNP
rs769208566 1602 dbSNP
rs1374828592 1611 dbSNP
rs1383363236 1619 dbSNP
rs917988754 1620 dbSNP
rs1475154726 1630 dbSNP
rs1013141920 1634 dbSNP
rs948089403 1635 dbSNP
rs1045065488 1642 dbSNP
rs1190508261 1647 dbSNP
rs925241586 1651 dbSNP
rs1486166461 1657 dbSNP
rs1023639432 1660 dbSNP
rs1390883545 1667 dbSNP
rs936575248 1669 dbSNP
rs1336926469 1670 dbSNP
rs530365931 1671 dbSNP
rs528859655 1680 dbSNP
rs971677587 1690 dbSNP
rs1052328831 1696 dbSNP
rs892319738 1703 dbSNP
rs1219229841 1704 dbSNP
rs981431804 1727 dbSNP
rs1291286406 1732 dbSNP
rs548976558 1747 dbSNP
rs1340797884 1758 dbSNP
rs1325464017 1762 dbSNP
rs1331969655 1772 dbSNP
rs1398795362 1773 dbSNP
rs1233621570 1775 dbSNP
rs1051975698 1784 dbSNP
rs1461441145 1787 dbSNP
rs1416342937 1789 dbSNP
rs1167667564 1790 dbSNP
rs1475755963 1800 dbSNP
rs1363552376 1807 dbSNP
rs1026345537 1831 dbSNP
rs888870052 1854 dbSNP
rs1007685028 1861 dbSNP
rs562515409 1866 dbSNP
rs950758730 1881 dbSNP
rs1252126096 1883 dbSNP
rs1198728716 1890 dbSNP
rs1015932639 1891 dbSNP
rs985297971 1894 dbSNP
rs1271224125 1895 dbSNP
rs1276415516 1902 dbSNP
rs1235021337 1906 dbSNP
rs962989042 1907 dbSNP
rs1356840247 1909 dbSNP
rs1278719934 1910 dbSNP
rs1348395030 1924 dbSNP
rs1227742609 1926 dbSNP
rs1337751038 1934 dbSNP
rs995725756 1961 dbSNP
rs769614282 1962 dbSNP
rs776753045 1965 dbSNP
rs1392323678 1970 dbSNP
rs1328563302 1976 dbSNP
rs772997607 1979 dbSNP
rs761978125 1982 dbSNP
rs1465845042 1986 dbSNP
rs1211348807 1996 dbSNP
rs77250390 2000 dbSNP
rs541982050 2002 dbSNP
rs531295471 2007 dbSNP
rs1471323481 2021 dbSNP
rs1381791444 2023 dbSNP
rs1451834900 2040 dbSNP
rs544719665 2046 dbSNP
rs1201393854 2053 dbSNP
rs551464033 2060 dbSNP
rs1250564393 2068 dbSNP
rs1469980512 2074 dbSNP
rs1215540317 2075 dbSNP
rs1160521768 2077 dbSNP
rs1181122621 2083 dbSNP
rs1452096522 2086 dbSNP
rs992335865 2087 dbSNP
rs933273592 2090 dbSNP
rs1203170433 2091 dbSNP
rs1352506953 2092 dbSNP
rs918030243 2096 dbSNP
rs1287047022 2102 dbSNP
rs1233798036 2108 dbSNP
rs1368929412 2122 dbSNP
rs1042024558 2128 dbSNP
rs902213138 2134 dbSNP
rs571700493 2148 dbSNP
rs1316782812 2153 dbSNP
rs578176594 2157 dbSNP
rs761831254 2158 dbSNP
rs202143889 2160 dbSNP
rs192282865 2162 dbSNP
rs1392783828 2165 dbSNP
rs981225333 2166 dbSNP
rs1478033676 2167 dbSNP
rs1241462288 2169 dbSNP
rs1391657621 2170 dbSNP
rs1388766334 2171 dbSNP
rs1325237928 2175 dbSNP
rs1190879030 2179 dbSNP
rs547737132 2184 dbSNP
rs1286436081 2185 dbSNP
rs1409039845 2189 dbSNP
rs1288903627 2204 dbSNP
rs1044616688 2205 dbSNP
rs907439639 2212 dbSNP
rs1219899325 2222 dbSNP
rs936629631 2223 dbSNP
rs1268964786 2224 dbSNP
rs1433469486 2228 dbSNP
rs567600970 2230 dbSNP
rs1341577457 2250 dbSNP
rs1230862570 2253 dbSNP
rs879227491 2258 dbSNP
rs1264374259 2267 dbSNP
rs1052382161 2275 dbSNP
rs763519773 2276 dbSNP
rs1373249602 2282 dbSNP
rs1211229119 2287 dbSNP
rs913803158 2293 dbSNP
rs1418124585 2312 dbSNP
rs950708248 2351 dbSNP
rs1478752438 2353 dbSNP
rs1248035285 2357 dbSNP
rs1263713016 2362 dbSNP
rs1437595367 2375 dbSNP
rs933182038 2381 dbSNP
rs1254516018 2385 dbSNP
rs1006270669 2387 dbSNP
rs1051610635 2395 dbSNP
rs1016763956 2397 dbSNP
rs1437359589 2398 dbSNP
rs1164246590 2400 dbSNP
rs1270946082 2408 dbSNP
rs1216889670 2412 dbSNP
rs1319206450 2419 dbSNP
rs1369158994 2434 dbSNP
rs888906298 2437 dbSNP
rs974974955 2439 dbSNP
rs1007325041 2443 dbSNP
rs1304263414 2452 dbSNP
rs1428789178 2452 dbSNP
rs1308424285 2453 dbSNP
rs1037825039 2457 dbSNP
rs1448268966 2471 dbSNP
rs1353473559 2509 dbSNP
rs766783734 2510 dbSNP
rs923137976 2513 dbSNP
rs898863799 2519 dbSNP
rs993104965 2520 dbSNP
rs536579050 2527 dbSNP
rs1412886518 2530 dbSNP
rs1424264050 2532 dbSNP
rs1311968791 2542 dbSNP
rs1340523834 2545 dbSNP
rs1246420422 2546 dbSNP
rs951622589 2547 dbSNP
rs1249259387 2550 dbSNP
rs1341029471 2551 dbSNP
rs1474120381 2553 dbSNP
rs1415651721 2555 dbSNP
rs923581488 2564 dbSNP
rs1182714075 2566 dbSNP
rs1480423210 2567 dbSNP
rs200563397 2575 dbSNP
rs556137965 2579 dbSNP
rs145995016 2582 dbSNP
rs752048561 2583 dbSNP
rs1458226727 2587 dbSNP
rs969937181 2596 dbSNP
rs878960776 2598 dbSNP
rs1273136647 2602 dbSNP
rs1053494371 2603 dbSNP
rs1323927144 2606 dbSNP
rs1313863149 2610 dbSNP
rs770304788 2624 dbSNP
rs1372159516 2625 dbSNP
rs1181759688 2627 dbSNP
rs947856397 2642 dbSNP
rs1032416821 2643 dbSNP
rs1325182819 2646 dbSNP
rs907387424 2649 dbSNP
rs1003096828 2654 dbSNP
rs1048016213 2655 dbSNP
rs538718191 2664 dbSNP
rs1372661108 2674 dbSNP
rs774072725 2681 dbSNP
rs988138814 2689 dbSNP
rs1180697223 2694 dbSNP
rs1440434727 2694 dbSNP
rs185251894 2695 dbSNP
rs886403109 2697 dbSNP
rs1168948284 2703 dbSNP
rs1372139978 2705 dbSNP
rs1432679632 2708 dbSNP
rs1006631821 2709 dbSNP
rs1402904687 2711 dbSNP
rs72744691 2718 dbSNP
rs1292843990 2727 dbSNP
rs139531298 2733 dbSNP
rs1315453173 2736 dbSNP
rs1228723693 2747 dbSNP
rs767872268 2752 dbSNP
rs987768784 2753 dbSNP
rs1802660 2757 dbSNP
rs540438233 2766 dbSNP
rs1030099946 2792 dbSNP
rs1293981948 2797 dbSNP
rs1209933074 2798 dbSNP
rs1037478548 2800 dbSNP
rs560345205 2801 dbSNP
rs954561776 2807 dbSNP
rs572406187 2809 dbSNP
rs929006928 2813 dbSNP
rs1257096052 2820 dbSNP
rs1484531862 2821 dbSNP
rs958022141 2835 dbSNP
rs1268692390 2836 dbSNP
rs1203412098 2838 dbSNP
rs560417094 2839 dbSNP
rs895447146 2856 dbSNP
rs1265766036 2859 dbSNP
rs1013856212 2863 dbSNP
rs1025619539 2864 dbSNP
rs752340347 2865 dbSNP
rs763703972 2869 dbSNP
rs1190728993 2883 dbSNP
rs916279396 2890 dbSNP
rs947767666 2893 dbSNP
rs149269876 2897 dbSNP
rs1046199779 2903 dbSNP
rs1338214232 2908 dbSNP
rs1299800071 2912 dbSNP
rs1400310324 2915 dbSNP
rs928749568 2929 dbSNP
rs1171952486 2930 dbSNP
rs542982519 2933 dbSNP
rs1467674762 2936 dbSNP
rs1378243472 2942 dbSNP
rs776367974 2943 dbSNP
rs958103276 2944 dbSNP
rs1427243869 2952 dbSNP
rs988182932 2954 dbSNP
rs755797074 2958 dbSNP
rs1020983898 2969 dbSNP
rs1047959431 2995 dbSNP
rs763759249 3011 dbSNP
rs1256396476 3021 dbSNP
rs954842331 3022 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000330847.1 | 3UTR | AGGCUGUGUUCACCUUCCCUGUCGAUCCCUUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
108 hsa-miR-6819-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT358318 PANK3 pantothenate kinase 3 2 2
MIRT454719 UBQLNL ubiquilin like 2 2
MIRT471362 PEG10 paternally expressed 10 2 2
MIRT478101 DLG5 discs large MAGUK scaffold protein 5 2 4
MIRT495554 GOLGA6L4 golgin A6 family-like 4 2 2
MIRT495587 GOLGA6L10 golgin A6 family-like 10 2 2
MIRT508315 RPL18 ribosomal protein L18 2 4
MIRT529183 ADAM33 ADAM metallopeptidase domain 33 2 2
MIRT532035 FHDC1 FH2 domain containing 1 2 2
MIRT545131 ANXA5 annexin A5 2 2
MIRT567288 HNRNPL heterogeneous nuclear ribonucleoprotein L 2 2
MIRT568094 CEBPG CCAAT/enhancer binding protein gamma 2 2
MIRT573291 DLX4 distal-less homeobox 4 2 2
MIRT575169 Fam120c family with sequence similarity 120, member C 2 2
MIRT609495 DNASE1L3 deoxyribonuclease 1 like 3 2 2
MIRT611264 EHD3 EH domain containing 3 2 2
MIRT613580 POC5 POC5 centriolar protein 2 2
MIRT616520 C9orf170 chromosome 9 open reading frame 170 2 2
MIRT617098 ZNF667 zinc finger protein 667 2 2
MIRT618268 DDX51 DEAD-box helicase 51 2 2
MIRT618294 ZNF682 zinc finger protein 682 2 2
MIRT618617 SHOX short stature homeobox 2 2
MIRT619741 SRFBP1 serum response factor binding protein 1 2 2
MIRT619784 NRIP2 nuclear receptor interacting protein 2 2 2
MIRT621119 SP110 SP110 nuclear body protein 2 2
MIRT622530 RAD51 RAD51 recombinase 2 2
MIRT623088 NME6 NME/NM23 nucleoside diphosphate kinase 6 2 2
MIRT623938 FKBP14 FK506 binding protein 14 2 2
MIRT624389 CD84 CD84 molecule 2 2
MIRT624860 ABI2 abl interactor 2 2 2
MIRT628752 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT632243 VTA1 vesicle trafficking 1 2 2
MIRT632987 E2F2 E2F transcription factor 2 2 2
MIRT633695 RBM43 RNA binding motif protein 43 2 2
MIRT633766 CENPBD1 CENPB DNA-binding domain containing 1 2 2
MIRT633808 ZNF91 zinc finger protein 91 2 2
MIRT638914 CBLN2 cerebellin 2 precursor 2 2
MIRT641298 SLAMF1 signaling lymphocytic activation molecule family member 1 2 2
MIRT642123 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT642179 HEBP2 heme binding protein 2 2 2
MIRT642617 CDKN3 cyclin dependent kinase inhibitor 3 2 2
MIRT643325 TMEM151B transmembrane protein 151B 2 2
MIRT644534 TMEM134 transmembrane protein 134 2 2
MIRT645820 OMA1 OMA1 zinc metallopeptidase 2 2
MIRT646093 MGST3 microsomal glutathione S-transferase 3 2 2
MIRT646861 SLC35E4 solute carrier family 35 member E4 2 2
MIRT647466 DZIP1L DAZ interacting zinc finger protein 1 like 2 2
MIRT647702 NADSYN1 NAD synthetase 1 2 2
MIRT648082 ZMIZ2 zinc finger MIZ-type containing 2 2 2
MIRT648547 TMEM169 transmembrane protein 169 2 2
MIRT648690 AP1M1 adaptor related protein complex 1 mu 1 subunit 2 2
MIRT649747 GNB5 G protein subunit beta 5 2 2
MIRT650154 ZNF426 zinc finger protein 426 2 2
MIRT650450 CPXM2 carboxypeptidase X, M14 family member 2 2 2
MIRT650943 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT651544 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT652304 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT652890 SYVN1 synoviolin 1 2 2
MIRT654222 RNF19B ring finger protein 19B 2 2
MIRT654676 PSMB5 proteasome subunit beta 5 2 2
MIRT658249 FAXC failed axon connections homolog 2 2
MIRT658363 FAM65B RHO family interacting cell polarization regulator 2 2 2
MIRT659622 CELF1 CUGBP Elav-like family member 1 2 2
MIRT660171 BNIP3L BCL2 interacting protein 3 like 2 2
MIRT660634 ANKRD52 ankyrin repeat domain 52 2 2
MIRT662428 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT662984 PAK3 p21 (RAC1) activated kinase 3 2 2
MIRT663939 ZNF554 zinc finger protein 554 2 2
MIRT666960 PKHD1 PKHD1, fibrocystin/polyductin 2 2
MIRT667945 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT668847 CYCS cytochrome c, somatic 2 2
MIRT671792 RGS17 regulator of G protein signaling 17 2 2
MIRT672382 RPL37 ribosomal protein L37 2 2
MIRT673516 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 4
MIRT674716 FAM73A mitoguardin 1 2 2
MIRT676352 KLF8 Kruppel like factor 8 2 2
MIRT677820 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT678440 PDE4C phosphodiesterase 4C 2 2
MIRT678499 ARHGEF39 Rho guanine nucleotide exchange factor 39 2 2
MIRT679243 LRP10 LDL receptor related protein 10 2 2
MIRT693607 SLC39A1 solute carrier family 39 member 1 2 2
MIRT695927 ZNF174 zinc finger protein 174 2 2
MIRT697987 TSPAN6 tetraspanin 6 2 2
MIRT700821 PHLDA2 pleckstrin homology like domain family A member 2 2 2
MIRT701350 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT702348 KLHL7 kelch like family member 7 2 2
MIRT703387 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT703883 ERBB2IP erbb2 interacting protein 2 2
MIRT708237 PPP1R26 protein phosphatase 1 regulatory subunit 26 2 2
MIRT708629 NUDT18 nudix hydrolase 18 2 2
MIRT708990 CABP4 calcium binding protein 4 2 2
MIRT709804 FOXE1 forkhead box E1 2 2
MIRT710203 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT710248 VAMP1 vesicle associated membrane protein 1 2 2
MIRT710281 FGF1 fibroblast growth factor 1 2 2
MIRT712992 IRGQ immunity related GTPase Q 2 2
MIRT713887 MOB3A MOB kinase activator 3A 2 2
MIRT715600 ADAM17 ADAM metallopeptidase domain 17 2 2
MIRT715639 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT715686 FRK fyn related Src family tyrosine kinase 2 2
MIRT717053 WIZ widely interspaced zinc finger motifs 2 2
MIRT717611 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT721539 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT722096 SUSD1 sushi domain containing 1 2 2
MIRT722435 HRNR hornerin 2 2
MIRT722855 NEGR1 neuronal growth regulator 1 2 2
MIRT724621 SNAP25 synaptosome associated protein 25 2 2
MIRT724777 PSG4 pregnancy specific beta-1-glycoprotein 4 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-6819 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6819-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6819-3p Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-6819-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-6819-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-6819-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6819-3p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-6819-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)

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