pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol MYPN   
Synonyms CMD1DD, CMH22, MYOP, NEM11, RCM4
Description myopalladin
Transcript NM_032578   
Expression
Putative miRNA Targets on MYPN
3'UTR of MYPN
(miRNA target sites are highlighted)
>MYPN|NM_032578|3'UTR
   1 GAATGTCTAGGTACCTGCTGTGTAAGAGAGCGGACTGTGGAGGGGGAATGAGAACAAGCCAGACTTGGTGGTTTCCAAGC
  81 AACCGAAGTTGAGTAAGTTCCCACACTGCTGGACCTGTGGCAAAGAGTGCTTTGAATAAGTCAGCTAGGGATTCTTGCAG
 161 TCTCAGCTGAGGGAGAAAGGTAGGGCTGTGCCTTCTAAAGATTCCAACAGAGATGTGAGAAGATAATACAGATGAACCAA
 241 AGATGTCACACAGTTGCCATCCACTGCTTTGGGAAAAAACTAGCATGCTCCCCTGCTCCCTGTTGTGTTAGGGATGTTTA
 321 GGTCATACTAGGAGCAATTAGGAGCCATATGCCTGGGCTGAGAAGAGCTAGGCAGTAGTGACCTTAGGATATGACTAACT
 401 CACCAAACAATGCCAAGGAGAAAGGCGGACAGGTCACCATCACCTTTCATCGATTACATGTATAGCAGTAGTTTTGGTGA
 481 ATTCACCAAATCAGCTTCCACTTAGCATTAGGAGGTCATGCCATACAACTCACGTATGCGGGCAAACACTTTTGATTTGC
 561 ATATCCTGGGTGTACTGAGCCACATAATAAGGTGTCAAAATGTGCTTGAGATTCCAAAAACTTGCTGAAACACTTGATAT
 641 TGCACAGTGCACTTATTTTGTGGCCAAAGCATGGCCTTACCAGCTTGTCTGCACTATTTTCTTTTGGGTGGTGACTGTTT
 721 TTTTCTGACTTTGCATATCCCTAGACACTAGAACTAAAGGATTGGTAATAAACCAATCAGAAAGAAATCCTCTGTGGGGT
 801 CACTTTAAAAACTACTAGCTTCAACTACCACTTACAAAATGTGCAAGAGTCATCATTTGCCCATAAAATACACCTCATGG
 881 GCTCCTACCCCTTTCCCCAAAAGTCTGAAAGTGTAGGAGGAAGGAAGAGATACAAACAAGGAGAGGAAATGATGGGAGAG
 961 TGTTGTTTTTGTCACTTGCCCCAGCAGAGCAGGGGTTTTGGAAGGAGAGGTCTTTAATAGCTTTGAAATGCTTTGAGATC
1041 ATTGGTCAAATTGCATTTTCTATGTAGAGAATATTCTGCTAGGTGGAAAAGTTGGGAGAAAGGGGAATATGCATCTTTAT
1121 TCTAATCACCAATTCAAACCCTGCCTCTTAAGGAATTTTTAGACTTAAGTTCACTGTGATATCCCTAGTACCTAGAAGAG
1201 TACCTAGCACAAAGTAGACATTCAATAAATATTTGCTGGTTGAATGAATCTTCTGTTATTATGTCTATTATAAGATAACC
1281 TAATCTTATATTCTGCAGGAATATGCCACCCACACACCAGTCCAAACACTGCCCTGGGAATGCTCATCACAGCACAGTTT
1361 GCTCTAGGCTGTGCAGGGAAATGAATTGCAGGTGTCTGTTTTCAATTCCCTGTGCTGGAATCCCTGGTGCTGTCTGTGCC
1441 AAGCACACTCAGCTGGCATTGTATTTGTGTGAACAGACAGTAACTGCTTAGAAAGGCTTGAAACTGTCTTCACTTCAAGG
1521 CAAGGATTTCCAGCATAAAAATAAATTCATTCACTGGAGAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucGGUCGGUUGAGUGUCACGUcu 5'
            |: | :| : |||||||||  
Target 5' caCTTGATATTGCACAGTGCAct 3'
631 - 653 141.00 -13.70
2
miRNA  3' ucggucGGUU----GAGUGUCACGUCu 5'
                ||||    || | ||||:|| 
Target 5' ctttccCCAAAAGTCTGAAAGTGTAGg 3'
891 - 917 139.00 -14.00
3
miRNA  3' ucgGUCGGUUGAG---UGUCACGUCu 5'
             |||:: :|||   :| |||||| 
Target 5' gcaCAGTTTGCTCTAGGCTGTGCAGg 3'
1352 - 1377 132.00 -18.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
671639 1 ClinVar
387610 6 ClinVar
1201820 291 ClinVar
COSN31562542 29 COSMIC
COSN31498280 32 COSMIC
COSN2525812 33 COSMIC
COSN30127452 46 COSMIC
COSN30455477 61 COSMIC
COSN22699173 69 COSMIC
COSN29513684 72 COSMIC
COSN26604953 81 COSMIC
COSN8640415 90 COSMIC
COSN30487625 101 COSMIC
COSN31509688 150 COSMIC
COSN31509674 151 COSMIC
COSN31489508 176 COSMIC
COSN30160075 201 COSMIC
COSN4716344 261 COSMIC
COSN31520240 284 COSMIC
COSN31486470 285 COSMIC
COSN31602680 391 COSMIC
COSN28907694 534 COSMIC
COSN29513699 540 COSMIC
COSN29211514 736 COSMIC
COSN5882237 837 COSMIC
COSN20107207 928 COSMIC
COSN1499010 996 COSMIC
COSN5882238 1485 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs539338042 1 dbSNP
rs1373996052 3 dbSNP
rs1421940761 4 dbSNP
rs1057522837 6 dbSNP
rs749762276 9 dbSNP
rs771288619 11 dbSNP
rs759619043 16 dbSNP
rs538795576 18 dbSNP
rs779170579 21 dbSNP
rs746080654 23 dbSNP
rs939221726 29 dbSNP
rs1315473600 30 dbSNP
rs781670467 30 dbSNP
rs370955104 32 dbSNP
rs747147639 33 dbSNP
rs768872780 34 dbSNP
rs773138815 37 dbSNP
rs945607196 38 dbSNP
rs762817420 41 dbSNP
rs546447610 44 dbSNP
rs1211327735 45 dbSNP
rs1267411567 46 dbSNP
rs766172764 47 dbSNP
rs1193518103 48 dbSNP
rs774050479 49 dbSNP
rs759180177 58 dbSNP
rs1159637821 59 dbSNP
rs1363655535 60 dbSNP
rs1261774656 61 dbSNP
rs903828466 63 dbSNP
rs1451861158 68 dbSNP
rs767214381 78 dbSNP
rs752359641 79 dbSNP
rs750883178 83 dbSNP
rs769430786 85 dbSNP
rs187853696 86 dbSNP
rs775245706 90 dbSNP
rs1028324916 94 dbSNP
rs1379157196 94 dbSNP
rs1482598127 96 dbSNP
rs1308239641 100 dbSNP
rs1314961091 103 dbSNP
rs372734206 107 dbSNP
rs1438495680 109 dbSNP
rs1265697303 120 dbSNP
rs758683747 121 dbSNP
rs780369235 129 dbSNP
rs772361836 130 dbSNP
rs747241469 131 dbSNP
rs756736938 134 dbSNP
rs768744850 135 dbSNP
rs1179867037 136 dbSNP
rs1348997960 137 dbSNP
rs776620387 138 dbSNP
rs749215179 142 dbSNP
rs770836566 148 dbSNP
rs1008049072 149 dbSNP
rs1015828228 162 dbSNP
rs1369281698 168 dbSNP
rs1460924239 170 dbSNP
rs1162873449 172 dbSNP
rs774182728 173 dbSNP
rs961340223 179 dbSNP
rs117014451 180 dbSNP
rs1370859814 181 dbSNP
rs575231907 184 dbSNP
rs537970618 191 dbSNP
rs557265984 192 dbSNP
rs370535978 198 dbSNP
rs1231149432 203 dbSNP
rs1259417221 209 dbSNP
rs1318044916 211 dbSNP
rs1199772660 225 dbSNP
rs998419694 232 dbSNP
rs753329495 239 dbSNP
rs1184286944 247 dbSNP
rs1028531330 259 dbSNP
rs757779682 266 dbSNP
rs1358443126 269 dbSNP
rs765726256 270 dbSNP
rs1474995518 271 dbSNP
rs80123789 272 dbSNP
rs1185598302 274 dbSNP
rs1186138727 275 dbSNP
rs1425831819 280 dbSNP
rs954392875 281 dbSNP
rs577475117 288 dbSNP
rs758771751 289 dbSNP
rs150489652 291 dbSNP
rs1224829774 293 dbSNP
rs1328823664 295 dbSNP
rs34929388 298 dbSNP
rs1379161285 303 dbSNP
rs914039707 305 dbSNP
rs977765815 306 dbSNP
rs1445230917 313 dbSNP
rs1354651258 314 dbSNP
rs1412499429 317 dbSNP
rs747208896 318 dbSNP
rs1384325367 326 dbSNP
rs77243223 345 dbSNP
rs1456334099 348 dbSNP
rs576373869 352 dbSNP
rs1160938062 355 dbSNP
rs1295408265 356 dbSNP
rs572400609 360 dbSNP
rs1413055512 378 dbSNP
rs1180022736 382 dbSNP
rs1212927197 383 dbSNP
rs1222207318 388 dbSNP
rs1256931859 392 dbSNP
rs768472620 397 dbSNP
rs1485572712 399 dbSNP
rs1208951279 401 dbSNP
rs1265642360 403 dbSNP
rs990768713 404 dbSNP
rs541891459 405 dbSNP
rs1250126674 406 dbSNP
rs1217023620 408 dbSNP
rs1321469534 417 dbSNP
rs1461799929 418 dbSNP
rs1186010837 420 dbSNP
rs1417546216 423 dbSNP
rs1434826365 427 dbSNP
rs1176771947 428 dbSNP
rs1374577911 431 dbSNP
rs1315066986 433 dbSNP
rs781324101 438 dbSNP
rs1433907001 439 dbSNP
rs1299587693 440 dbSNP
rs1360770387 443 dbSNP
rs916466159 445 dbSNP
rs748230333 450 dbSNP
rs1369166353 451 dbSNP
rs769929432 452 dbSNP
rs1304850751 453 dbSNP
rs778754931 454 dbSNP
rs1168111928 456 dbSNP
rs745834764 460 dbSNP
rs1288349048 463 dbSNP
rs771804637 469 dbSNP
rs1215412600 470 dbSNP
rs909967848 479 dbSNP
rs940136241 490 dbSNP
rs891237814 492 dbSNP
rs774746262 493 dbSNP
rs1489521649 497 dbSNP
rs1008247423 502 dbSNP
rs1394411776 504 dbSNP
rs1452280626 506 dbSNP
rs1160225215 508 dbSNP
rs1036884401 516 dbSNP
rs762155040 517 dbSNP
rs775314406 519 dbSNP
rs562188194 521 dbSNP
rs1351066378 522 dbSNP
rs1436609975 523 dbSNP
rs1488376833 525 dbSNP
rs1327084261 534 dbSNP
rs772622783 535 dbSNP
rs995441459 537 dbSNP
rs773608931 540 dbSNP
rs760684177 541 dbSNP
rs1351894687 542 dbSNP
rs1223406032 544 dbSNP
rs573596383 549 dbSNP
rs1323513519 550 dbSNP
rs1214415859 551 dbSNP
rs1252520939 560 dbSNP
rs1467082106 561 dbSNP
rs761173943 566 dbSNP
rs969962308 574 dbSNP
rs138268569 575 dbSNP
rs1001236714 578 dbSNP
rs1355850564 580 dbSNP
rs562141434 582 dbSNP
rs1299157552 584 dbSNP
rs901223465 587 dbSNP
rs1214758974 588 dbSNP
rs530906809 589 dbSNP
rs1366678940 593 dbSNP
rs1415513717 593 dbSNP
rs764564544 601 dbSNP
rs1291519255 602 dbSNP
rs1405381770 606 dbSNP
rs1035342681 608 dbSNP
rs149201880 611 dbSNP
rs1374821067 616 dbSNP
rs988943613 616 dbSNP
rs1050441220 617 dbSNP
rs763579247 618 dbSNP
rs1423509382 625 dbSNP
rs1011511042 626 dbSNP
rs1336690511 631 dbSNP
rs1441943453 634 dbSNP
rs1277948002 635 dbSNP
rs1381603007 649 dbSNP
rs1234206023 652 dbSNP
rs766816415 654 dbSNP
rs1332832455 661 dbSNP
rs1480961755 662 dbSNP
rs1251792755 664 dbSNP
rs1200405464 671 dbSNP
rs1273668052 675 dbSNP
rs1436944387 680 dbSNP
rs876489 684 dbSNP
rs1239045954 686 dbSNP
rs532913377 690 dbSNP
rs967267234 694 dbSNP
rs1311185674 697 dbSNP
rs546410569 698 dbSNP
rs1414987359 701 dbSNP
rs1298718482 706 dbSNP
rs753964716 710 dbSNP
rs1478527231 712 dbSNP
rs925571495 718 dbSNP
rs932890994 730 dbSNP
rs1409958370 736 dbSNP
rs1327265843 737 dbSNP
rs1361305546 739 dbSNP
rs1407867263 740 dbSNP
rs1415606478 741 dbSNP
rs1398743543 744 dbSNP
rs1309550615 745 dbSNP
rs1465603234 746 dbSNP
rs1357702739 747 dbSNP
rs1292933110 749 dbSNP
rs1353600952 752 dbSNP
rs192430229 763 dbSNP
rs1270636251 765 dbSNP
rs1411639594 766 dbSNP
rs1338652118 777 dbSNP
rs1489779122 782 dbSNP
rs960367991 785 dbSNP
rs944147068 790 dbSNP
rs1485902477 791 dbSNP
rs990444652 792 dbSNP
rs759719729 798 dbSNP
rs1254971702 799 dbSNP
rs765506186 802 dbSNP
rs1482629413 809 dbSNP
rs1193264981 813 dbSNP
rs1372069666 815 dbSNP
rs143346187 816 dbSNP
rs995788596 836 dbSNP
rs1427641999 837 dbSNP
rs1435762486 841 dbSNP
rs1324024307 844 dbSNP
rs1312431018 848 dbSNP
rs1267194179 849 dbSNP
rs985097160 861 dbSNP
rs1402142548 864 dbSNP
rs1319058467 865 dbSNP
rs137922290 866 dbSNP
rs1395575648 869 dbSNP
rs1225121506 873 dbSNP
rs1276564591 875 dbSNP
rs1348271896 877 dbSNP
rs905809073 882 dbSNP
rs1388387111 889 dbSNP
rs1001435977 890 dbSNP
rs1163590066 892 dbSNP
rs1364941675 895 dbSNP
rs781212389 898 dbSNP
rs1205399832 899 dbSNP
rs752968210 912 dbSNP
rs568879266 917 dbSNP
rs201204017 925 dbSNP
rs111667972 927 dbSNP
rs3217542 927 dbSNP
rs771254181 927 dbSNP
rs66943529 928 dbSNP
rs1255448005 931 dbSNP
rs377538665 933 dbSNP
rs1037113359 934 dbSNP
rs1423073691 938 dbSNP
rs922655918 942 dbSNP
rs1240671573 944 dbSNP
rs1185066047 954 dbSNP
rs1173389270 956 dbSNP
rs959666106 957 dbSNP
rs1455512262 958 dbSNP
rs537455141 959 dbSNP
rs1430631558 971 dbSNP
rs1268545105 974 dbSNP
rs1159412962 980 dbSNP
rs1009996797 981 dbSNP
rs933997400 983 dbSNP
rs1352548212 984 dbSNP
rs1215413877 985 dbSNP
rs1243926414 996 dbSNP
rs1049727655 1000 dbSNP
rs1325384225 1005 dbSNP
rs71541556 1006 dbSNP
rs968488901 1009 dbSNP
rs757015375 1017 dbSNP
rs1300947872 1018 dbSNP
rs1355651546 1027 dbSNP
rs1044351158 1029 dbSNP
rs1239256862 1030 dbSNP
rs1259817069 1031 dbSNP
rs1384313128 1032 dbSNP
rs1347841033 1039 dbSNP
rs902717378 1044 dbSNP
rs1032453827 1052 dbSNP
rs777850596 1055 dbSNP
rs954311130 1057 dbSNP
rs1382858003 1060 dbSNP
rs1487954525 1061 dbSNP
rs1165004569 1064 dbSNP
rs564628158 1065 dbSNP
rs550909458 1066 dbSNP
rs1193602888 1077 dbSNP
rs1444701580 1081 dbSNP
rs1034769648 1083 dbSNP
rs1421270705 1087 dbSNP
rs1182746907 1088 dbSNP
rs1363439155 1093 dbSNP
rs1448554487 1097 dbSNP
rs985646766 1104 dbSNP
rs1209181585 1110 dbSNP
rs772039763 1111 dbSNP
rs1395367378 1114 dbSNP
rs912569232 1118 dbSNP
rs1323834738 1120 dbSNP
rs1673 1121 dbSNP
rs746838400 1123 dbSNP
rs972758953 1124 dbSNP
rs1391765625 1129 dbSNP
rs1305777531 1130 dbSNP
rs1180943683 1140 dbSNP
rs750357456 1141 dbSNP
rs1246619121 1145 dbSNP
rs1273234391 1149 dbSNP
rs1403485765 1154 dbSNP
rs984762384 1156 dbSNP
rs1333577621 1162 dbSNP
rs1015250588 1164 dbSNP
rs1304256425 1165 dbSNP
rs1271858806 1176 dbSNP
rs1369362259 1183 dbSNP
rs1481782845 1184 dbSNP
rs1165815401 1193 dbSNP
rs1196736226 1199 dbSNP
rs1446079895 1201 dbSNP
rs1250340283 1204 dbSNP
rs1197993562 1205 dbSNP
rs1165931583 1211 dbSNP
rs41278500 1218 dbSNP
rs975851106 1219 dbSNP
rs116456902 1221 dbSNP
rs60688485 1224 dbSNP
rs41278502 1225 dbSNP
rs911249656 1226 dbSNP
rs769383469 1230 dbSNP
rs1462484291 1233 dbSNP
rs1340400509 1239 dbSNP
rs1274473134 1242 dbSNP
rs1297390265 1245 dbSNP
rs1394115235 1246 dbSNP
rs1416218042 1247 dbSNP
rs1293549909 1248 dbSNP
rs1354222639 1253 dbSNP
rs1222116056 1268 dbSNP
rs555466407 1269 dbSNP
rs1291908234 1270 dbSNP
rs1248425772 1273 dbSNP
rs1309781583 1274 dbSNP
rs1205885780 1275 dbSNP
rs1409702525 1276 dbSNP
rs1334675986 1277 dbSNP
rs566706752 1280 dbSNP
rs1411154657 1290 dbSNP
rs1315524754 1300 dbSNP
rs772885977 1306 dbSNP
rs1396846836 1307 dbSNP
rs1043991259 1310 dbSNP
rs1213239828 1311 dbSNP
rs1203350070 1321 dbSNP
rs570474566 1323 dbSNP
rs1485352864 1324 dbSNP
rs935503015 1328 dbSNP
rs544281572 1329 dbSNP
rs1429017743 1334 dbSNP
rs1169711229 1338 dbSNP
rs896640716 1339 dbSNP
rs564212978 1344 dbSNP
rs768419414 1345 dbSNP
rs1184146347 1347 dbSNP
rs767047177 1351 dbSNP
rs881976 1356 dbSNP
rs1278236065 1357 dbSNP
rs112100404 1363 dbSNP
rs1326132338 1368 dbSNP
rs1290089307 1370 dbSNP
rs881975 1374 dbSNP
rs1215622309 1376 dbSNP
rs1295539942 1378 dbSNP
rs1349248182 1380 dbSNP
rs1306062433 1384 dbSNP
rs1032484774 1388 dbSNP
rs1281566165 1391 dbSNP
rs1014798278 1393 dbSNP
rs1347421450 1398 dbSNP
rs1209045453 1406 dbSNP
rs1243896033 1410 dbSNP
rs961914285 1411 dbSNP
rs1185815797 1413 dbSNP
rs1259576096 1415 dbSNP
rs747970724 1419 dbSNP
rs1405496629 1427 dbSNP
rs1449935587 1431 dbSNP
rs529169188 1440 dbSNP
rs2278675 1441 dbSNP
rs777801208 1444 dbSNP
rs1160870920 1445 dbSNP
rs1345230190 1446 dbSNP
rs142475557 1453 dbSNP
rs1401789275 1456 dbSNP
rs1288740859 1457 dbSNP
rs1363626607 1458 dbSNP
rs1019865897 1460 dbSNP
rs1243973668 1463 dbSNP
rs1304586208 1464 dbSNP
rs1315484312 1465 dbSNP
rs551108204 1468 dbSNP
rs1217637504 1471 dbSNP
rs758319728 1477 dbSNP
rs771465374 1479 dbSNP
rs1215168377 1483 dbSNP
rs374837300 1485 dbSNP
rs1259095735 1493 dbSNP
rs979817843 1496 dbSNP
rs1194242506 1497 dbSNP
rs118157288 1504 dbSNP
rs746974707 1506 dbSNP
rs1178508898 1512 dbSNP
rs1243128153 1520 dbSNP
rs918579591 1526 dbSNP
rs935597566 1527 dbSNP
rs1056711128 1528 dbSNP
rs937118224 1531 dbSNP
rs1399814875 1532 dbSNP
rs1401161405 1533 dbSNP
rs1334971135 1537 dbSNP
rs77248736 1541 dbSNP
rs1396081752 1546 dbSNP
rs367673718 1548 dbSNP
rs945965986 1549 dbSNP
rs1186121322 1555 dbSNP
rs1327189438 1557 dbSNP
rs1044830761 1558 dbSNP
rs887486800 1562 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucggucGGUUGAGUGUCACGUCu 5'
                |||:  :: ||||||| 
Target 5' uauugcCCAGGCUGGAGUGCAGu 3'
2 - 24
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000358913.5 | 3UTR | GUAUUGCCCAGGCUGGAGUGCAGUGGCGCAAUCUCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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