pre-miRNA Information
pre-miRNA hsa-mir-103b-1   
Genomic Coordinates chr5: 168560904 - 168560965
Description Homo sapiens miR-103b-1 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases
pre-miRNA hsa-mir-103b-2   
Genomic Coordinates chr20: 3917502 - 3917563
Description Homo sapiens miR-103b-2 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-103b
Sequence 1| UCAUAGCCCUGUACAAUGCUGCU |23
Evidence Experimental
Experiments ChIP-seq
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN28198041 16 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs369221403 4 dbSNP
rs1283132774 7 dbSNP
rs1222085747 10 dbSNP
rs572980521 14 dbSNP
rs748411363 15 dbSNP
rs769854452 23 dbSNP
Putative Targets

Gene Information
Gene Symbol MSL1   
Synonyms MSL-1, hMSL1
Description male specific lethal 1 homolog
Transcript NM_001012241   
Expression
Putative miRNA Targets on MSL1
3'UTR of MSL1
(miRNA target sites are highlighted)
>MSL1|NM_001012241|3'UTR
   1 CTGTGCTGGCAAGAACCCTGTCTTCAGATAGTTGTAGCATGCCATTCCCGAGAGTGGCAGAGACCTGTATATGTGACCTT
  81 TGTCCTCACATATGTTATCACTCGCTGATAATACCCTTTCATACTTCCTTGACTTTGTTTTCATTACTCTGATTTCACAA
 161 AAACTCTTTCATTCGGCTAATTGTGAGTTATGGAGGGTGATTGGGATTTCTTTTCCCTTTTTTGGGAAATGGGCTCTCAA
 241 GCTAAAGCTATAGGATGGCAGATTCAGAAGTTTCAGGGGTCTGTTTCTATACATTTGCCTATGTTAAAGGGGTAAAAGGG
 321 CTCTCTTCATTAGACATGTGGAAGATGAAGCAGCCCCTTCCTTTAGAGCTGTGCCTGCATGGCACTCTTCTCACCCTGGT
 401 ACACCCTCCTTATAGTGGGTATAGTGATTTTTAACCCTAAAATAAAACAAACAACCTCACCATGAGCTTTAGGACCAGAA
 481 GAGGAATGACAAGTGAAGCGATGAAGCAAGCCATCTTCACAGAGTAGAAAAGACATCGGAGAGTTGGTAGATAACTGTCT
 561 GAAAAGATAGTTGTTCATTTGAAACTATTCTGTGATACAGTCATGTGGGAAGGGATGTTTGGCTGTGATTATTTTTTCAG
 641 TTAATGGATAACAATTTCTTTACTGCTCAAAAACCAAAATCTTTGGAAAAGAAAGTGGGGATGGTTAGTTTCAGAACAAG
 721 TTACAGCTGTAAACAAAAGCACTTAGTATTTGGGATGGCATGCCAAAACCTGTATAAATGTCCTTGTATCACATCACTTC
 801 TCAAGTATTCCTTCATTGGGCTTCATCCTTTTAGCAGAACTCTTGGTGGTGGGATAGAGACTTAGGGAGGGTAGGGGGAG
 881 AGTGTGGAAATAGGTGCTTCCTTTGGCTGGCAAATGTCTACATCTTGAAACAAACAGATGTACCTAATGAGCTTCTCCAT
 961 TCACTTTGTAAAAATAATTTGTATGTGTACCATCTTGGTCCTCTCCCCTCCCGTTTTGTTAAAATATCAGGATAGCACTC
1041 CCAGGCCACTTTGGTCTCAGTGTAAGATCCCTATTAACTATCTGAAAGGAAAATAGAGCCAAGACCTCTGGTCTCAAATA
1121 TATAGGAATTGCCTTTCTTTAGTCTTCAGGACTATTGTGTGAAAACAAGTAGGGGTCTAATCTCCTAGAAGGTAGGGGCT
1201 TTTATCCTTAAAGAGAATATGTCCCCAGATTATTAGCACTTTTAGAGGAGAAGCCAAGGTATGTAGGGTGTGTGGCTGGC
1281 CCATCAGTGGAGCACGAAGAGAGAATGGGATACCATTGTGGGAAGAGAAGAAAAGTTCCTCAGGGGCCTCCCACTGCTAA
1361 AGTTTTTTGTGAGATGTTGATCTGTGCTTCCTGGATTTGACTTTTAAAGGAATTATTCTGGCAGCACATGTAGTATTCTT
1441 GGATGATCTTGCTGCTCTTATTTCTCCTTTTGTGTGTGTGTGTGTGTGTGTGTGGCTATGGGTTTTCATTTGTAACTCCA
1521 TCTGCTTAGGAGAGTGGGCTCTCTATAAGGGAACCTGCTGTAAACTTCATTGCAGCAAGGATGTAGAGAGAAATAGGACT
1601 TAATTCCACTAGGGGCTCTCATCTCACACCTTAAGGAGGAGATTTCTAGAAAAACTGGGCCAGATTTTCTTTGTTCTCCA
1681 TCATTTTAATGTGGCAGGCTGTTCAGTTTTCTTACTCTTACCTATGTGATATTTCTTCGTAACGTGTCCAAAAAGAAAAA
1761 AGACCCAATCAGTGTCTCTTGACTTTGTTCTTTGATCCCTCAGTTTCTTCTTGATTTCAGCATGTGTCGGGTTCCTAATT
1841 TTGGGTATGAGTTAGCAAATTTAACCATTGTGTTTGTGCCCTACCCAGGGGACTCCCCAGTTTCTGACTTGAAGTAGACT
1921 GAGAAGAATCCACGAGGTGCTATCTGGCCAGATTTAAGTAGATTCTATTTCCTTGGTTCTCCCTCTCCCTGAGGACCTCT
2001 TATTTTATTGTCCCCTCTTCTAGGTTAATTCTCCTTTGATTTGACTTTGTTGAGAAGGAGGTTGGACAGTAGATTAGCAA
2081 AGTTCCAAGTGCAAAATTACAGTGTGTTAGAGTGTGGGGGGAAAATTAGTCTTATTTTTCCCTACATGGGATACAACACT
2161 GTGAATTCAATCTTCAACTGAAGGCCCTGCAGTTCTCCTAAAACATAGTTGTTTGTTTTTCTTTAACAAAGTTTAAGCTA
2241 GTGTTAATAAATTAAAAAAAATTGCTTGTCTGTCTACTTCAGCTTTGTTTTATGCCCATTTCATATTGTTGTCTGTGTTG
2321 TAATTCATAACTTTTGATACCATTTCTGATGTGTAAAATTGGTTGTCTTGTAAATATCTTATAAAGAGTTCAATTGTAAA
2401 TAAACTATTGTGGCTGTTAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucguCGUA-ACAUGUCCCGAUACu 5'
              |::| |||::: ||||||| 
Target 5' gtgtGTGTGTGTGTGTGGCTATGg 3'
1478 - 1501 159.00 -15.60
2
miRNA  3' ucgUCGUAACAUGUCCCGAUACu 5'
             || : ||| :  ||||:|| 
Target 5' ggaAGGGATGTTT--GGCTGTGa 3'
608 - 628 132.00 -13.10
3
miRNA  3' ucGUCGUAACAU---GUC--CCGAUAcu 5'
            || |||| ||   ::|  ||||:|  
Target 5' tcCATCATTTTAATGTGGCAGGCTGTtc 3'
1677 - 1704 123.00 -9.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30159718 26 COSMIC
COSN30533761 49 COSMIC
COSN30119766 70 COSMIC
COSN30541273 85 COSMIC
COSN31560753 122 COSMIC
COSN31961324 528 COSMIC
COSN31961325 591 COSMIC
COSN1718964 1108 COSMIC
COSN32056646 1286 COSMIC
COSN16312562 1330 COSMIC
COSN17119574 1473 COSMIC
COSN23198168 1494 COSMIC
COSN20113899 1495 COSMIC
COSN24013548 1831 COSMIC
COSN24912613 2361 COSMIC
COSN24911220 2369 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1315823897 1 dbSNP
rs1298635567 11 dbSNP
rs1330535561 12 dbSNP
rs1208973018 16 dbSNP
rs1292235053 16 dbSNP
rs1267055657 17 dbSNP
rs1230181292 18 dbSNP
rs1463841918 19 dbSNP
rs963270397 20 dbSNP
rs1247624504 21 dbSNP
rs746475660 21 dbSNP
rs1478025518 24 dbSNP
rs1189967173 31 dbSNP
rs1414370227 33 dbSNP
rs770321442 36 dbSNP
rs1400421194 41 dbSNP
rs1304647187 49 dbSNP
rs1363308244 50 dbSNP
rs866778369 50 dbSNP
rs1158741096 51 dbSNP
rs1473885451 52 dbSNP
rs372999457 53 dbSNP
rs1187762890 55 dbSNP
rs1440322960 59 dbSNP
rs1257760121 66 dbSNP
rs1200677557 72 dbSNP
rs1385404511 78 dbSNP
rs1485235582 85 dbSNP
rs1301053595 90 dbSNP
rs557625087 91 dbSNP
rs532146572 93 dbSNP
rs547031311 95 dbSNP
rs982865056 99 dbSNP
rs1231293247 100 dbSNP
rs917923208 104 dbSNP
rs1033237756 105 dbSNP
rs1384317561 113 dbSNP
rs1318664043 124 dbSNP
rs372433035 125 dbSNP
rs1205968148 128 dbSNP
rs1390092822 132 dbSNP
rs1164846088 156 dbSNP
rs1471973818 158 dbSNP
rs1370593094 164 dbSNP
rs1187748728 166 dbSNP
rs1427609940 172 dbSNP
rs957281346 175 dbSNP
rs1009866432 176 dbSNP
rs936925278 179 dbSNP
rs186424223 182 dbSNP
rs1207993671 192 dbSNP
rs1358154509 198 dbSNP
rs536194813 202 dbSNP
rs1245754155 208 dbSNP
rs892666951 215 dbSNP
rs1009311244 218 dbSNP
rs955187871 219 dbSNP
rs986513380 220 dbSNP
rs911078821 231 dbSNP
rs890212588 232 dbSNP
rs1190928873 234 dbSNP
rs963834723 237 dbSNP
rs1389484497 251 dbSNP
rs1429762805 254 dbSNP
rs141810003 265 dbSNP
rs1461171869 267 dbSNP
rs1388004065 274 dbSNP
rs1363288060 275 dbSNP
rs745447621 279 dbSNP
rs930645101 280 dbSNP
rs143770102 295 dbSNP
rs148130269 299 dbSNP
rs1480988727 302 dbSNP
rs1196602531 303 dbSNP
rs1388959072 310 dbSNP
rs777204292 311 dbSNP
rs1267785293 321 dbSNP
rs1453295262 321 dbSNP
rs1295964534 326 dbSNP
rs1339820240 328 dbSNP
rs1272662565 341 dbSNP
rs973324756 345 dbSNP
rs950136914 351 dbSNP
rs1342896086 354 dbSNP
rs1045835456 365 dbSNP
rs1434906116 366 dbSNP
rs1333403659 368 dbSNP
rs1324607150 377 dbSNP
rs906042974 380 dbSNP
rs1001681073 390 dbSNP
rs141692709 393 dbSNP
rs1369101620 396 dbSNP
rs1055120897 399 dbSNP
rs1393933659 404 dbSNP
rs1430028266 404 dbSNP
rs1170363192 407 dbSNP
rs577220587 413 dbSNP
rs893355422 414 dbSNP
rs537886431 417 dbSNP
rs1276820050 429 dbSNP
rs1207529612 444 dbSNP
rs1253730707 444 dbSNP
rs1483526248 445 dbSNP
rs1019989891 448 dbSNP
rs189995437 452 dbSNP
rs574757655 467 dbSNP
rs1217606210 484 dbSNP
rs1347239976 491 dbSNP
rs1275894386 500 dbSNP
rs1007962749 501 dbSNP
rs1348965146 507 dbSNP
rs1221089814 511 dbSNP
rs1017953601 516 dbSNP
rs1374533992 530 dbSNP
rs1266326726 532 dbSNP
rs963846193 538 dbSNP
rs973842115 539 dbSNP
rs1425294806 544 dbSNP
rs762189621 545 dbSNP
rs542184426 552 dbSNP
rs776397401 559 dbSNP
rs1413859710 561 dbSNP
rs1182722034 563 dbSNP
rs951368487 567 dbSNP
rs983084918 572 dbSNP
rs1450037525 579 dbSNP
rs907899321 580 dbSNP
rs950002012 582 dbSNP
rs563945621 590 dbSNP
rs927323609 592 dbSNP
rs182573385 600 dbSNP
rs1165036254 602 dbSNP
rs1279448580 603 dbSNP
rs1208627515 605 dbSNP
rs926667741 610 dbSNP
rs773762079 611 dbSNP
rs187223087 626 dbSNP
rs1459720200 633 dbSNP
rs766776486 641 dbSNP
rs75153767 645 dbSNP
rs1282024596 648 dbSNP
rs751819184 649 dbSNP
rs1449799414 671 dbSNP
rs1359209606 679 dbSNP
rs1317066738 695 dbSNP
rs532155670 697 dbSNP
rs945486869 710 dbSNP
rs1390822532 711 dbSNP
rs1159835300 715 dbSNP
rs547460757 717 dbSNP
rs1411402681 719 dbSNP
rs1300517467 722 dbSNP
rs1180288263 730 dbSNP
rs1051943966 732 dbSNP
rs1473926200 737 dbSNP
rs1238096844 742 dbSNP
rs1188083657 760 dbSNP
rs890170933 775 dbSNP
rs1270503284 777 dbSNP
rs1209938462 789 dbSNP
rs1321442895 792 dbSNP
rs1042351905 793 dbSNP
rs1229641965 802 dbSNP
rs890807300 805 dbSNP
rs1007807254 816 dbSNP
rs759673613 817 dbSNP
rs1432193738 826 dbSNP
rs1323783914 832 dbSNP
rs1366749934 833 dbSNP
rs565575232 835 dbSNP
rs994712028 840 dbSNP
rs529671893 844 dbSNP
rs556577055 847 dbSNP
rs1026843043 851 dbSNP
rs1407293451 856 dbSNP
rs767428356 857 dbSNP
rs951275593 858 dbSNP
rs1447686826 860 dbSNP
rs982732257 872 dbSNP
rs373013241 875 dbSNP
rs750284030 876 dbSNP
rs1189751656 879 dbSNP
rs190505948 883 dbSNP
rs926601813 887 dbSNP
rs1482639471 893 dbSNP
rs1273382252 900 dbSNP
rs1322713649 900 dbSNP
rs1181992540 901 dbSNP
rs1225764417 905 dbSNP
rs1415477377 907 dbSNP
rs1416977740 914 dbSNP
rs958062555 915 dbSNP
rs1365489156 920 dbSNP
rs1295058780 921 dbSNP
rs1436844894 926 dbSNP
rs914120248 936 dbSNP
rs989482339 936 dbSNP
rs536850527 937 dbSNP
rs1392065725 942 dbSNP
rs1411620916 955 dbSNP
rs1253409729 963 dbSNP
rs1433098399 964 dbSNP
rs1423617430 967 dbSNP
rs927272793 968 dbSNP
rs1488989061 970 dbSNP
rs552000388 975 dbSNP
rs150107977 985 dbSNP
rs990623294 988 dbSNP
rs1483857444 990 dbSNP
rs1447361721 991 dbSNP
rs1303540096 993 dbSNP
rs1038823259 994 dbSNP
rs914777645 1005 dbSNP
rs1231968189 1007 dbSNP
rs796152139 1013 dbSNP
rs138543128 1014 dbSNP
rs755954788 1025 dbSNP
rs1226747024 1028 dbSNP
rs1425057655 1032 dbSNP
rs867854077 1035 dbSNP
rs1349622712 1036 dbSNP
rs891342253 1045 dbSNP
rs994430209 1046 dbSNP
rs1276396912 1054 dbSNP
rs1372701518 1063 dbSNP
rs1298973120 1067 dbSNP
rs1465552250 1069 dbSNP
rs1357533251 1070 dbSNP
rs1047398789 1074 dbSNP
rs553408713 1079 dbSNP
rs777662178 1089 dbSNP
rs1238657423 1095 dbSNP
rs753669655 1099 dbSNP
rs1024545516 1106 dbSNP
rs899489511 1107 dbSNP
rs1180926238 1114 dbSNP
rs1481959375 1127 dbSNP
rs969950399 1134 dbSNP
rs1210689440 1135 dbSNP
rs878924708 1138 dbSNP
rs141519435 1139 dbSNP
rs1002695218 1150 dbSNP
rs1027121704 1155 dbSNP
rs1252180868 1156 dbSNP
rs886964746 1176 dbSNP
rs1229938256 1182 dbSNP
rs1350892392 1185 dbSNP
rs1307931607 1189 dbSNP
rs1395694643 1191 dbSNP
rs183217393 1199 dbSNP
rs16965660 1200 dbSNP
rs1470588413 1203 dbSNP
rs970667624 1210 dbSNP
rs1002119585 1216 dbSNP
rs188945615 1218 dbSNP
rs546517310 1221 dbSNP
rs778591417 1226 dbSNP
rs1186367980 1229 dbSNP
rs1034375780 1232 dbSNP
rs112027518 1235 dbSNP
rs1183729377 1240 dbSNP
rs376549357 1244 dbSNP
rs1266094821 1245 dbSNP
rs1464059298 1245 dbSNP
rs1210550769 1269 dbSNP
rs564565181 1270 dbSNP
rs987777798 1271 dbSNP
rs1360906771 1282 dbSNP
rs573370993 1283 dbSNP
rs912046294 1289 dbSNP
rs990266002 1291 dbSNP
rs1307650000 1292 dbSNP
rs1351394836 1296 dbSNP
rs1453396650 1296 dbSNP
rs1039187144 1297 dbSNP
rs914619478 1302 dbSNP
rs1386087362 1309 dbSNP
rs1163104348 1317 dbSNP
rs540798708 1318 dbSNP
rs967577567 1319 dbSNP
rs1369778432 1324 dbSNP
rs920316973 1328 dbSNP
rs1366679231 1331 dbSNP
rs930414177 1331 dbSNP
rs978024968 1332 dbSNP
rs1447554697 1333 dbSNP
rs1266408547 1344 dbSNP
rs1219681018 1345 dbSNP
rs912726442 1348 dbSNP
rs944314506 1349 dbSNP
rs1039919316 1350 dbSNP
rs1014578488 1354 dbSNP
rs745449190 1360 dbSNP
rs930950688 1363 dbSNP
rs1247014275 1365 dbSNP
rs905775704 1369 dbSNP
rs1048146214 1375 dbSNP
rs1196345657 1388 dbSNP
rs1231247591 1391 dbSNP
rs1245296812 1394 dbSNP
rs886824702 1400 dbSNP
rs1327588150 1406 dbSNP
rs1477912895 1408 dbSNP
rs559363679 1413 dbSNP
rs765781668 1417 dbSNP
rs1385384372 1426 dbSNP
rs1393366997 1427 dbSNP
rs1303332033 1430 dbSNP
rs1428762192 1431 dbSNP
rs1387752308 1443 dbSNP
rs958083654 1448 dbSNP
rs1003958117 1462 dbSNP
rs77875570 1467 dbSNP
rs75739124 1469 dbSNP
rs1011026987 1470 dbSNP
rs1020961095 1471 dbSNP
rs112133915 1471 dbSNP
rs1196674584 1471 dbSNP
rs1272552479 1471 dbSNP
rs1340156737 1471 dbSNP
rs1376944676 1471 dbSNP
rs150591830 1471 dbSNP
rs754410709 1471 dbSNP
rs966775947 1473 dbSNP
rs1046302362 1475 dbSNP
rs1371360607 1483 dbSNP
rs906347008 1485 dbSNP
rs987881204 1489 dbSNP
rs192672561 1494 dbSNP
rs1417658318 1499 dbSNP
rs771646243 1501 dbSNP
rs1033570288 1503 dbSNP
rs1019160175 1507 dbSNP
rs965347474 1508 dbSNP
rs1400913242 1513 dbSNP
rs958754430 1517 dbSNP
rs920786436 1525 dbSNP
rs1429724467 1532 dbSNP
rs1363005978 1534 dbSNP
rs1471495045 1536 dbSNP
rs751299384 1539 dbSNP
rs184475273 1542 dbSNP
rs1011955588 1544 dbSNP
rs779387257 1545 dbSNP
rs1021616973 1550 dbSNP
rs983199042 1551 dbSNP
rs1199216763 1558 dbSNP
rs1326363597 1565 dbSNP
rs907529302 1566 dbSNP
rs547736229 1571 dbSNP
rs757892260 1585 dbSNP
rs552673619 1589 dbSNP
rs369248804 1590 dbSNP
rs371592240 1594 dbSNP
rs1349026440 1597 dbSNP
rs1343708505 1608 dbSNP
rs1280890834 1612 dbSNP
rs1442517971 1614 dbSNP
rs1339333810 1620 dbSNP
rs1331702821 1624 dbSNP
rs967904937 1628 dbSNP
rs1406650182 1631 dbSNP
rs949706527 1633 dbSNP
rs1045816193 1634 dbSNP
rs1413930959 1634 dbSNP
rs1207638832 1637 dbSNP
rs146286484 1653 dbSNP
rs1451388667 1656 dbSNP
rs1470659098 1665 dbSNP
rs912757757 1673 dbSNP
rs1222843674 1678 dbSNP
rs1185585785 1679 dbSNP
rs905749125 1685 dbSNP
rs1255415344 1691 dbSNP
rs965487677 1695 dbSNP
rs34676792 1707 dbSNP
rs746510053 1709 dbSNP
rs1462724892 1720 dbSNP
rs1264231732 1724 dbSNP
rs937257169 1730 dbSNP
rs893011482 1736 dbSNP
rs530751541 1739 dbSNP
rs1010995977 1740 dbSNP
rs1021013220 1742 dbSNP
rs754676115 1743 dbSNP
rs921475513 1744 dbSNP
rs112863326 1745 dbSNP
rs1390807819 1748 dbSNP
rs1476437598 1749 dbSNP
rs1161678609 1750 dbSNP
rs1390366836 1756 dbSNP
rs1390527669 1769 dbSNP
rs1019381832 1770 dbSNP
rs139412882 1772 dbSNP
rs1413272720 1775 dbSNP
rs1161687651 1779 dbSNP
rs908200271 1784 dbSNP
rs939790664 1791 dbSNP
rs1046168414 1797 dbSNP
rs1243850572 1801 dbSNP
rs753286381 1815 dbSNP
rs28758455 1821 dbSNP
rs1055052580 1822 dbSNP
rs1216875751 1823 dbSNP
rs893747175 1829 dbSNP
rs1010818987 1830 dbSNP
rs773851736 1832 dbSNP
rs903168766 1846 dbSNP
rs1242063969 1865 dbSNP
rs187963435 1869 dbSNP
rs1019632534 1881 dbSNP
rs1283222644 1887 dbSNP
rs1226082294 1890 dbSNP
rs1364063006 1896 dbSNP
rs1356669293 1898 dbSNP
rs952251920 1900 dbSNP
rs779476082 1906 dbSNP
rs1301477933 1907 dbSNP
rs983585105 1915 dbSNP
rs763471251 1916 dbSNP
rs1385934023 1918 dbSNP
rs546796130 1919 dbSNP
rs907581754 1921 dbSNP
rs80103101 1922 dbSNP
rs1422184398 1925 dbSNP
rs975518942 1934 dbSNP
rs375130547 1935 dbSNP
rs1245392405 1940 dbSNP
rs1224211926 1941 dbSNP
rs1185577825 1946 dbSNP
rs937235807 1953 dbSNP
rs1054415574 1960 dbSNP
rs893063624 1963 dbSNP
rs1473227051 1966 dbSNP
rs1218602661 1977 dbSNP
rs1365204152 1984 dbSNP
rs1285005949 1999 dbSNP
rs1406975103 2017 dbSNP
rs1366360229 2022 dbSNP
rs953116258 2029 dbSNP
rs1307658577 2031 dbSNP
rs1409417908 2043 dbSNP
rs1356375044 2045 dbSNP
rs1171705783 2046 dbSNP
rs1433155620 2049 dbSNP
rs1456511504 2053 dbSNP
rs1202119227 2061 dbSNP
rs984372533 2063 dbSNP
rs1250528982 2074 dbSNP
rs774718302 2086 dbSNP
rs142623456 2087 dbSNP
rs981877137 2089 dbSNP
rs1481301838 2099 dbSNP
rs1251439363 2112 dbSNP
rs1332973025 2113 dbSNP
rs927661720 2114 dbSNP
rs1310425384 2115 dbSNP
rs902574914 2116 dbSNP
rs575700279 2117 dbSNP
rs1449698811 2122 dbSNP
rs754271540 2123 dbSNP
rs540170599 2125 dbSNP
rs1287909651 2126 dbSNP
rs1389937426 2127 dbSNP
rs1375585041 2145 dbSNP
rs1327527783 2155 dbSNP
rs1228232198 2160 dbSNP
rs1298885020 2168 dbSNP
rs1009420274 2178 dbSNP
rs1353525536 2180 dbSNP
rs1404469405 2188 dbSNP
rs1018933658 2194 dbSNP
rs1055406053 2207 dbSNP
rs1420550387 2209 dbSNP
rs900544427 2209 dbSNP
rs893620174 2215 dbSNP
rs1180708902 2224 dbSNP
rs1481989617 2230 dbSNP
rs367704694 2249 dbSNP
rs1204246262 2254 dbSNP
rs1328197005 2254 dbSNP
rs573379990 2255 dbSNP
rs903200442 2262 dbSNP
rs1319014114 2264 dbSNP
rs1190248042 2267 dbSNP
rs1249972800 2269 dbSNP
rs998773074 2277 dbSNP
rs1472134608 2279 dbSNP
rs1395461364 2282 dbSNP
rs1019665140 2283 dbSNP
rs372924007 2286 dbSNP
rs1339215100 2287 dbSNP
rs1004976783 2294 dbSNP
rs1159692551 2297 dbSNP
rs1388328652 2306 dbSNP
rs901300228 2309 dbSNP
rs1455683464 2316 dbSNP
rs1464446602 2323 dbSNP
rs1171944176 2324 dbSNP
rs1442184034 2328 dbSNP
rs971151541 2335 dbSNP
rs996884777 2336 dbSNP
rs540779861 2337 dbSNP
rs1028934699 2341 dbSNP
rs1206614264 2351 dbSNP
rs1486074765 2366 dbSNP
rs926978342 2370 dbSNP
rs767657049 2371 dbSNP
rs1357347414 2375 dbSNP
rs984794645 2378 dbSNP
rs1317305322 2382 dbSNP
rs989825044 2383 dbSNP
rs1289335593 2389 dbSNP
rs752765370 2394 dbSNP
rs1384231638 2398 dbSNP
rs1337926136 2412 dbSNP
rs760773620 2412 dbSNP
rs1015825842 2415 dbSNP
rs79785823 2418 dbSNP
rs1231637490 2429 dbSNP
rs1292556581 2430 dbSNP
rs1422404782 2432 dbSNP
rs961037055 2434 dbSNP
rs1043812 2437 dbSNP
rs1255926857 2444 dbSNP
rs572897969 2448 dbSNP
rs1448362217 2449 dbSNP
rs528611573 2458 dbSNP
rs1195278224 2467 dbSNP
rs944801040 2478 dbSNP
rs1040898016 2481 dbSNP
rs1221989387 2492 dbSNP
rs1482873935 2499 dbSNP
rs1294030563 2501 dbSNP
rs927609189 2517 dbSNP
rs869063238 2522 dbSNP
rs1341579654 2524 dbSNP
rs1268881037 2526 dbSNP
rs937765736 2529 dbSNP
rs900597230 2536 dbSNP
rs1327356197 2538 dbSNP
rs990570270 2548 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000398532.4 | 3UTR | AUUUCUCCUUUUGUGUGUGUGUGUGUGUGUGUGUGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28260 Renal cortex and medulla 0.863 7.3e-5 0.846 1.3e-4 13 Click to see details
GSE28544 Breast cancer 0.411 2.3e-2 0.042 4.2e-1 24 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
53 hsa-miR-103b Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT218386 E2F3 E2F transcription factor 3 2 2
MIRT404221 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT441502 SPG20 spartin 2 6
MIRT444124 ZNRF3 zinc and ring finger 3 2 2
MIRT454236 OSBPL10 oxysterol binding protein like 10 2 4
MIRT457919 ZNF212 zinc finger protein 212 2 2
MIRT462254 LAMA4 laminin subunit alpha 4 2 2
MIRT463176 ZNF281 zinc finger protein 281 2 2
MIRT472355 TSPAN1 tetraspanin 1 2 2
MIRT474133 LIN54 lin-54 DREAM MuvB core complex component 2 4
MIRT494946 IFFO2 intermediate filament family orphan 2 2 2
MIRT497403 NPY4R neuropeptide Y receptor Y4 2 2
MIRT497641 GLDN gliomedin 2 2
MIRT505340 TMEM245 transmembrane protein 245 2 6
MIRT505680 SESTD1 SEC14 and spectrin domain containing 1 2 6
MIRT510706 SREK1IP1 SREK1 interacting protein 1 2 6
MIRT512198 C1orf43 chromosome 1 open reading frame 43 2 2
MIRT522089 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 4
MIRT525074 FRK fyn related Src family tyrosine kinase 2 2
MIRT531276 PPIL3 peptidylprolyl isomerase like 3 2 2
MIRT535119 PLXNA2 plexin A2 2 2
MIRT540836 GNAT1 G protein subunit alpha transducin 1 2 4
MIRT541018 WIPI2 WD repeat domain, phosphoinositide interacting 2 2 2
MIRT545752 CA12 carbonic anhydrase 12 2 4
MIRT546404 SRP9 signal recognition particle 9 2 2
MIRT547991 HCFC2 host cell factor C2 2 4
MIRT554502 SAE1 SUMO1 activating enzyme subunit 1 2 2
MIRT558360 DMTF1 cyclin D binding myb like transcription factor 1 2 2
MIRT558863 CD2AP CD2 associated protein 2 2
MIRT559939 ZNF567 zinc finger protein 567 2 2
MIRT566300 PPM1A protein phosphatase, Mg2+/Mn2+ dependent 1A 2 2
MIRT567490 FOXK1 forkhead box K1 2 2
MIRT617139 ZNF556 zinc finger protein 556 2 2
MIRT625400 AKR7L aldo-keto reductase family 7 like (gene/pseudogene) 2 2
MIRT626491 CEP89 centrosomal protein 89 2 2
MIRT629487 GSN gelsolin 2 4
MIRT638456 PLXDC2 plexin domain containing 2 2 2
MIRT648498 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT654845 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT664587 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT664977 TDRD1 tudor domain containing 1 2 2
MIRT665028 ELK1 ELK1, ETS transcription factor 2 2
MIRT666043 STON2 stonin 2 2 2
MIRT668863 CRY2 cryptochrome circadian clock 2 2 2
MIRT669297 C17orf85 nuclear cap binding subunit 3 2 2
MIRT680975 DCAF17 DDB1 and CUL4 associated factor 17 2 2
MIRT682267 RS1 retinoschisin 1 2 2
MIRT685283 KIAA1143 KIAA1143 2 2
MIRT693375 PIGP phosphatidylinositol glycan anchor biosynthesis class P 2 2
MIRT701785 MSL1 male specific lethal 1 homolog 2 2
MIRT709373 SPECC1 sperm antigen with calponin homology and coiled-coil domains 1 2 2
MIRT715154 IL12B interleukin 12B 2 2
MIRT734499 ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif 5 3 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-103b Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (BGC823)
hsa-miR-103b Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-103b Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-103b Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-103b Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-103b Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-103b Cisplatin 5460033 NSC119875 approved resistant cell line (BGC-823)

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