pre-miRNA Information
pre-miRNA hsa-mir-371b   
Genomic Coordinates chr19: 53787677 - 53787742
Description Homo sapiens miR-371b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-371b-3p
Sequence 43| AAGUGCCCCCACAGUUUGAGUGC |65
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 19 - 53787699 16594986 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1345825760 2 dbSNP
rs922443786 5 dbSNP
rs773769548 6 dbSNP
rs1034874198 8 dbSNP
rs772543475 9 dbSNP
rs1318684148 10 dbSNP
rs1004685112 12 dbSNP
rs1402402708 12 dbSNP
rs1427092890 13 dbSNP
rs1202234248 14 dbSNP
rs770734168 14 dbSNP
rs1428290628 15 dbSNP
rs1480794990 15 dbSNP
rs1049004182 17 dbSNP
rs1185000692 19 dbSNP
rs748499899 22 dbSNP
rs1487511363 23 dbSNP
Putative Targets

Gene Information
Gene Symbol IGFBP3   
Synonyms BP-53, IBP3
Description insulin like growth factor binding protein 3
Transcript NM_000598   
Other Transcripts NM_001013398   
Expression
Putative miRNA Targets on IGFBP3
3'UTR of IGFBP3
(miRNA target sites are highlighted)
>IGFBP3|NM_000598|3'UTR
   1 ACGCCTGCCGCAAGGTTAATGTGGAGCTCAAATATGCCTTATTTTGCACAAAAGACTGCCAAGGACATGACCAGCAGCTG
  81 GCTACAGCCTCGATTTATATTTCTGTTTGTGGTGAACTGATTTTTTTTAAACCAAAGTTTAGAAAGAGGTTTTTGAAATG
 161 CCTATGGTTTCTTTGAATGGTAAACTTGAGCATCTTTTCACTTTCCAGTAGTCAGCAAAGAGCAGTTTGAATTTTCTTGT
 241 CGCTTCCTATCAAAATATTCAGAGACTCGAGCACAGCACCCAGACTTCATGCGCCCGTGGAATGCTCACCACATGTTGGT
 321 CGAAGCGGCCGACCACTGACTTTGTGACTTAGGCGGCTGTGTTGCCTATGTAGAGAACACGCTTCACCCCCACTCCCCGT
 401 ACAGTGCGCACAGGCTTTATCGAGAATAGGAAAACCTTTAAACCCCGGTCATCCGGACATCCCAACGCATGCTCCTGGAG
 481 CTCACAGCCTTCTGTGGTGTCATTTCTGAAACAAGGGCGTGGATCCCTCAACCAAGAAGAATGTTTATGTCTTCAAGTGA
 561 CCTGTACTGCTTGGGGACTATTGGAGAAAATAAGGTGGAGTCCTACTTGTTTAAAAAATATGTATCTAAGAATGTTCTAG
 641 GGCACTCTGGGAACCTATAAAGGCAGGTATTTCGGGCCCTCCTCTTCAGGAATCTTCCTGAAGACATGGCCCAGTCGAAG
 721 GCCCAGGATGGCTTTTGCTGCGGCCCCGTGGGGTAGGAGGGACAGAGAGACAGGGAGAGTCAGCCTCCACATTCAGAGGC
 801 ATCACAAGTAATGGCACAATTCTTCGGATGACTGCAGAAAATAGTGTTTTGTAGTTCAACAACTCAAGACGAAGCTTATT
 881 TCTGAGGATAAGCTCTTTAAAGGCAAAGCTTTATTTTCATCTCTCATCTTTTGTCCTCCTTAGCACAATGTAAAAAAGAA
 961 TAGTAATATCAGAACAGGAAGGAGGAATGGCTTGCTGGGGAGCCCATCCAGGACACTGGGAGCACATAGAGATTCACCCA
1041 TGTTTGTTGAACTTAGAGTCATTCTCATGCTTTTCTTTATAATTCACACATATATGCAGAGAAGATATGTTCTTGTTAAC
1121 ATTGTATACAACATAGCCCCAAATATAGTAAGATCTATACTAGATAATCCTAGATGAAATGTTAGAGATGCTATATGATA
1201 CAACTGTGGCCATGACTGAGGAAAGGAGCTCACGCCCAGAGACTGGGCTGCTCTCCCGGAGGCCAAACCCAAGAAGGTCT
1281 GGCAAAGTCAGGCTCAGGGAGACTCTGCCCTGCTGCAGACCTCGGTGTGGACACACGCTGCATAGAGCTCTCCTTGAAAA
1361 CAGAGGGGTCTCAAGACATTCTGCCTACCTATTAGCTTTTCTTTATTTTTTTAACTTTTTGGGGGGAAAAGTATTTTTGA
1441 GAAGTTTGTCTTGCAATGTATTTATAAATAGTAAATAAAGTTTTTACCATTAAAAAAATATCTTTCCCTTTGTTATTGAC
1521 CATCTCTGGGCTTTGTATCACTAATTATTTTATTTTATTATATAATAATTATTTTATTATAATAAAATCCTGAAAGGGGA
1601 AAATAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cguGAGUUUGACA--CCCCCGUGAa 5'
             || |:| |||    ||||||| 
Target 5' tatCTAAGAATGTTCTAGGGCACTc 3'
623 - 647 154.00 -12.50
2
miRNA  3' cgUGAGUUUGACACCCCCGUGAa 5'
            || :: ||||   ||| ||| 
Target 5' tgACCTGTACTGCTTGGGGACTa 3'
558 - 580 125.00 -12.50
3
miRNA  3' cgugaGUUUGACACCCCCGUGAa 5'
               ||:::  |  |||| || 
Target 5' aaaggCAGGTATTTCGGGCCCTc 3'
659 - 681 114.00 -7.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN20858953 1 COSMIC
COSN31533119 2 COSMIC
COSN31601131 3 COSMIC
COSN30505998 8 COSMIC
COSN26508282 10 COSMIC
COSN30676790 104 COSMIC
COSN28781029 125 COSMIC
COSN5101197 160 COSMIC
COSN23124644 249 COSMIC
COSN29753465 550 COSMIC
COSN20189291 589 COSMIC
COSN25776283 724 COSMIC
COSN17868547 788 COSMIC
COSN27242908 927 COSMIC
COSN26569631 973 COSMIC
COSN26571943 979 COSMIC
COSN28725465 982 COSMIC
COSN26671239 1036 COSMIC
COSN28744995 1157 COSMIC
COSN23890322 1488 COSMIC
COSN15014147 1577 COSMIC
COSN16809126 1644 COSMIC
COSN20091577 1690 COSMIC
COSN20104230 1690 COSMIC
COSN25478036 1777 COSMIC
COSN8023873 1812 COSMIC
COSN17452971 1893 COSMIC
COSN18812261 1942 COSMIC
COSN17541713 2294 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs763370325 1 dbSNP
rs375066468 2 dbSNP
rs372774193 3 dbSNP
rs368514631 7 dbSNP
rs768699148 9 dbSNP
rs534186072 10 dbSNP
rs375547886 20 dbSNP
rs1451524419 23 dbSNP
rs771979362 24 dbSNP
rs745810670 25 dbSNP
rs778723410 28 dbSNP
rs757153130 30 dbSNP
rs1218325303 31 dbSNP
rs200987053 37 dbSNP
rs1346834107 38 dbSNP
rs551620770 39 dbSNP
rs929868527 43 dbSNP
rs1288322446 46 dbSNP
rs777623195 47 dbSNP
rs755678503 50 dbSNP
rs752181315 51 dbSNP
rs1406970550 52 dbSNP
rs1284235561 56 dbSNP
rs1323270999 67 dbSNP
rs1038977468 68 dbSNP
rs539662958 69 dbSNP
rs1286801947 73 dbSNP
rs1488142946 78 dbSNP
rs550741185 86 dbSNP
rs531341714 87 dbSNP
rs1054452484 89 dbSNP
rs1314932680 104 dbSNP
rs957706761 108 dbSNP
rs1031987760 109 dbSNP
rs1409850374 117 dbSNP
rs936548428 119 dbSNP
rs558578341 123 dbSNP
rs548749305 134 dbSNP
rs1358715984 139 dbSNP
rs1346385077 157 dbSNP
rs1426554045 158 dbSNP
rs141031945 160 dbSNP
rs917599902 165 dbSNP
rs755319480 168 dbSNP
rs959007835 170 dbSNP
rs1016049137 173 dbSNP
rs1030993375 178 dbSNP
rs1374455167 179 dbSNP
rs997717741 180 dbSNP
rs1307630442 188 dbSNP
rs984938790 191 dbSNP
rs1362220703 196 dbSNP
rs1285339804 201 dbSNP
rs950953218 203 dbSNP
rs1291845470 210 dbSNP
rs1403158748 214 dbSNP
rs1367566992 218 dbSNP
rs900653979 220 dbSNP
rs1234417555 227 dbSNP
rs1470356701 228 dbSNP
rs1176554242 230 dbSNP
rs1026861478 232 dbSNP
rs1378475137 233 dbSNP
rs997786915 234 dbSNP
rs560195916 235 dbSNP
rs902075695 240 dbSNP
rs887780179 241 dbSNP
rs368047580 242 dbSNP
rs1017579361 244 dbSNP
rs1331074083 246 dbSNP
rs1355489141 253 dbSNP
rs1007540744 262 dbSNP
rs1442025037 266 dbSNP
rs1307520330 276 dbSNP
rs1385687163 280 dbSNP
rs893128414 288 dbSNP
rs1054506218 302 dbSNP
rs111696138 304 dbSNP
rs999304328 305 dbSNP
rs117963590 308 dbSNP
rs929289614 313 dbSNP
rs1354978933 325 dbSNP
rs1042584245 332 dbSNP
rs949347279 341 dbSNP
rs34735308 342 dbSNP
rs1055033040 347 dbSNP
rs949277942 360 dbSNP
rs916391580 363 dbSNP
rs1462626421 366 dbSNP
rs1184082159 369 dbSNP
rs990588777 370 dbSNP
rs1471815384 374 dbSNP
rs754129691 379 dbSNP
rs1180398278 380 dbSNP
rs192163626 389 dbSNP
rs766769083 390 dbSNP
rs544402378 393 dbSNP
rs760878525 400 dbSNP
rs908875861 403 dbSNP
rs753054433 404 dbSNP
rs574088399 408 dbSNP
rs1339370558 410 dbSNP
rs966760095 411 dbSNP
rs1339717160 412 dbSNP
rs1247256593 413 dbSNP
rs1030610097 417 dbSNP
rs1255950602 418 dbSNP
rs1324599218 420 dbSNP
rs976711042 429 dbSNP
rs950486547 430 dbSNP
rs1255473476 438 dbSNP
rs377372829 440 dbSNP
rs1231290351 446 dbSNP
rs1311706103 458 dbSNP
rs1242745877 459 dbSNP
rs919447200 462 dbSNP
rs976635463 468 dbSNP
rs1477637210 469 dbSNP
rs966166055 470 dbSNP
rs1168733120 482 dbSNP
rs1296319379 483 dbSNP
rs773477310 484 dbSNP
rs1470468980 497 dbSNP
rs964924855 497 dbSNP
rs2471549 501 dbSNP
rs1017685807 504 dbSNP
rs1017843244 510 dbSNP
rs1400764740 518 dbSNP
rs1320359722 534 dbSNP
rs1384395328 536 dbSNP
rs1007759777 538 dbSNP
rs1319760095 551 dbSNP
rs1006267925 553 dbSNP
rs887895011 565 dbSNP
rs957368706 566 dbSNP
rs1347007018 569 dbSNP
rs34505796 572 dbSNP
rs151099186 574 dbSNP
rs903241314 579 dbSNP
rs1206782709 587 dbSNP
rs1046325655 589 dbSNP
rs1285074615 589 dbSNP
rs1045797756 590 dbSNP
rs1373155917 591 dbSNP
rs1480878298 594 dbSNP
rs1171895826 596 dbSNP
rs1198657356 596 dbSNP
rs1426724042 600 dbSNP
rs1455832539 602 dbSNP
rs1054932074 604 dbSNP
rs2453840 607 dbSNP
rs896311843 609 dbSNP
rs925064040 612 dbSNP
rs978231301 623 dbSNP
rs1405147210 625 dbSNP
rs1240991254 627 dbSNP
rs1198967446 628 dbSNP
rs1241116080 638 dbSNP
rs1280001631 646 dbSNP
rs1352893748 657 dbSNP
rs945074306 658 dbSNP
rs1294013617 666 dbSNP
rs1055085233 670 dbSNP
rs1483012411 680 dbSNP
rs558054158 683 dbSNP
rs1421189384 714 dbSNP
rs1183164995 723 dbSNP
rs142931751 726 dbSNP
rs1438364167 728 dbSNP
rs1049178143 735 dbSNP
rs1340709842 738 dbSNP
rs1156352428 742 dbSNP
rs76265776 743 dbSNP
rs1458116986 748 dbSNP
rs1247284268 750 dbSNP
rs1388315664 753 dbSNP
rs1392988999 754 dbSNP
rs550804097 757 dbSNP
rs919026759 770 dbSNP
rs964896016 774 dbSNP
rs1237828312 778 dbSNP
rs1017802199 784 dbSNP
rs1360191439 785 dbSNP
rs1244346532 788 dbSNP
rs1263832221 790 dbSNP
rs975845649 791 dbSNP
rs34460927 799 dbSNP
rs1396752289 815 dbSNP
rs910720279 816 dbSNP
rs986351469 818 dbSNP
rs1026430393 827 dbSNP
rs567252358 828 dbSNP
rs957587168 829 dbSNP
rs1388970578 844 dbSNP
rs549022363 845 dbSNP
rs2453839 846 dbSNP
rs34835646 854 dbSNP
rs1171173086 864 dbSNP
rs967391005 865 dbSNP
rs551371622 876 dbSNP
rs895098166 881 dbSNP
rs1379984696 887 dbSNP
rs1024842883 892 dbSNP
rs1310640906 896 dbSNP
rs1014345700 902 dbSNP
rs896322956 911 dbSNP
rs1000724933 922 dbSNP
rs1033478889 927 dbSNP
rs867850121 928 dbSNP
rs1316389104 945 dbSNP
rs887668341 946 dbSNP
rs1244367111 948 dbSNP
rs1251470409 950 dbSNP
rs1483202132 950 dbSNP
rs1197729128 956 dbSNP
rs1048955361 959 dbSNP
rs928994048 960 dbSNP
rs897484982 974 dbSNP
rs1482125743 988 dbSNP
rs369037300 996 dbSNP
rs533297610 999 dbSNP
rs1170884430 1003 dbSNP
rs1422668710 1008 dbSNP
rs1223886858 1012 dbSNP
rs945079803 1019 dbSNP
rs1178312101 1023 dbSNP
rs1359728120 1037 dbSNP
rs1465460956 1039 dbSNP
rs776539878 1043 dbSNP
rs562758777 1052 dbSNP
rs544122042 1054 dbSNP
rs943035264 1055 dbSNP
rs910731637 1061 dbSNP
rs1244490878 1062 dbSNP
rs1225798671 1064 dbSNP
rs1279757073 1068 dbSNP
rs573742155 1069 dbSNP
rs746646862 1084 dbSNP
rs936151973 1088 dbSNP
rs78734586 1091 dbSNP
rs926226620 1094 dbSNP
rs984997056 1099 dbSNP
rs952228854 1103 dbSNP
rs919398918 1118 dbSNP
rs977692512 1125 dbSNP
rs35704214 1134 dbSNP
rs1024270077 1135 dbSNP
rs540695286 1141 dbSNP
rs771546046 1144 dbSNP
rs992920788 1160 dbSNP
rs958750662 1161 dbSNP
rs1201373579 1167 dbSNP
rs1024386254 1174 dbSNP
rs1012962821 1181 dbSNP
rs747631497 1190 dbSNP
rs188517081 1192 dbSNP
rs958678040 1193 dbSNP
rs1033608191 1206 dbSNP
rs1033532721 1209 dbSNP
rs1000759316 1211 dbSNP
rs903687267 1212 dbSNP
rs1358920161 1221 dbSNP
rs1406959388 1226 dbSNP
rs778533049 1228 dbSNP
rs1275843215 1229 dbSNP
rs1367280755 1232 dbSNP
rs1217990523 1236 dbSNP
rs1042579507 1238 dbSNP
rs1426549327 1239 dbSNP
rs1363626440 1243 dbSNP
rs557765610 1250 dbSNP
rs1487124522 1251 dbSNP
rs1224198043 1255 dbSNP
rs901625615 1262 dbSNP
rs1040104469 1263 dbSNP
rs144988498 1266 dbSNP
rs375727414 1267 dbSNP
rs887606618 1274 dbSNP
rs1049321507 1280 dbSNP
rs1184261769 1285 dbSNP
rs184231714 1289 dbSNP
rs1251260524 1291 dbSNP
rs1200214121 1292 dbSNP
rs1481928978 1295 dbSNP
rs1349665560 1296 dbSNP
rs45599232 1297 dbSNP
rs557185179 1301 dbSNP
rs1378352339 1303 dbSNP
rs1240010901 1307 dbSNP
rs1490997301 1311 dbSNP
rs897488876 1313 dbSNP
rs1287917938 1315 dbSNP
rs139499181 1321 dbSNP
rs944475889 1324 dbSNP
rs755408181 1325 dbSNP
rs1219170800 1329 dbSNP
rs1239742029 1334 dbSNP
rs754408863 1338 dbSNP
rs1177877046 1340 dbSNP
rs971586950 1350 dbSNP
rs1262805435 1351 dbSNP
rs917345908 1353 dbSNP
rs147431117 1355 dbSNP
rs1226198697 1361 dbSNP
rs11537920 1364 dbSNP
rs1413412537 1368 dbSNP
rs991558530 1369 dbSNP
rs555190966 1376 dbSNP
rs556552597 1377 dbSNP
rs533913387 1378 dbSNP
rs1385618486 1381 dbSNP
rs1449659538 1384 dbSNP
rs368919123 1387 dbSNP
rs566555066 1391 dbSNP
rs780378982 1392 dbSNP
rs1322833091 1396 dbSNP
rs946285985 1403 dbSNP
rs917252726 1406 dbSNP
rs1386875987 1407 dbSNP
rs992805748 1413 dbSNP
rs1444049461 1414 dbSNP
rs958678011 1416 dbSNP
rs9911 1417 dbSNP
rs549449563 1424 dbSNP
rs952013786 1425 dbSNP
rs1245005883 1429 dbSNP
rs1198795177 1435 dbSNP
rs1027452719 1436 dbSNP
rs993833203 1437 dbSNP
rs1007242672 1438 dbSNP
rs961961255 1444 dbSNP
rs532952008 1448 dbSNP
rs1264386094 1463 dbSNP
rs1334282246 1471 dbSNP
rs139630277 1487 dbSNP
rs888773102 1488 dbSNP
rs1050171314 1489 dbSNP
rs1340738827 1496 dbSNP
rs150554235 1497 dbSNP
rs1255889346 1504 dbSNP
rs1263403125 1512 dbSNP
rs1224915418 1520 dbSNP
rs1342273877 1529 dbSNP
rs1273658134 1539 dbSNP
rs375965218 1540 dbSNP
rs750574411 1555 dbSNP
rs11537917 1571 dbSNP
rs765127923 1574 dbSNP
rs1264248671 1576 dbSNP
rs1477606238 1580 dbSNP
rs917400364 1590 dbSNP
rs1434046400 1595 dbSNP
rs991573092 1625 dbSNP
rs570886065 1627 dbSNP
rs1406495664 1630 dbSNP
rs1177451917 1635 dbSNP
rs1041860986 1636 dbSNP
rs937374818 1643 dbSNP
rs761907166 1644 dbSNP
rs1360819354 1646 dbSNP
rs751573179 1648 dbSNP
rs1423160278 1649 dbSNP
rs1172067406 1650 dbSNP
rs1476062145 1651 dbSNP
rs1233888426 1655 dbSNP
rs1299346622 1656 dbSNP
rs1392547234 1662 dbSNP
rs1232443733 1666 dbSNP
rs1342774284 1670 dbSNP
rs534054231 1675 dbSNP
rs553075574 1680 dbSNP
rs1286788067 1685 dbSNP
rs561949306 1686 dbSNP
rs540040038 1687 dbSNP
rs1452482848 1691 dbSNP
rs1244060658 1711 dbSNP
rs1205176137 1712 dbSNP
rs1057383914 1713 dbSNP
rs1440332414 1715 dbSNP
rs1442061076 1716 dbSNP
rs937360317 1717 dbSNP
rs528604617 1718 dbSNP
rs1286692569 1719 dbSNP
rs984209533 1720 dbSNP
rs952796027 1723 dbSNP
rs920439092 1728 dbSNP
rs35751739 1729 dbSNP
rs34735423 1730 dbSNP
rs1018850778 1733 dbSNP
rs1008765659 1738 dbSNP
rs1338382689 1741 dbSNP
rs953051308 1742 dbSNP
rs35496550 1743 dbSNP
rs1357305119 1744 dbSNP
rs1209666948 1745 dbSNP
rs1265665683 1746 dbSNP
rs1459501351 1756 dbSNP
rs1357636334 1760 dbSNP
rs1179755841 1769 dbSNP
rs994935423 1789 dbSNP
rs1438615509 1792 dbSNP
rs1410577084 1795 dbSNP
rs532416336 1796 dbSNP
rs759387880 1797 dbSNP
rs1000366084 1801 dbSNP
rs950290210 1814 dbSNP
rs1448923866 1824 dbSNP
rs904248754 1827 dbSNP
rs545796926 1829 dbSNP
rs1314912777 1833 dbSNP
rs1017968660 1835 dbSNP
rs1041840587 1856 dbSNP
rs575195497 1858 dbSNP
rs776768153 1863 dbSNP
rs1244279417 1879 dbSNP
rs1056008488 1882 dbSNP
rs1320374642 1885 dbSNP
rs937487724 1889 dbSNP
rs1010434436 1895 dbSNP
rs770794262 1897 dbSNP
rs1456810677 1898 dbSNP
rs1175018742 1907 dbSNP
rs1471634337 1910 dbSNP
rs1236502795 1911 dbSNP
rs1204727832 1918 dbSNP
rs1057418957 1919 dbSNP
rs926048765 1921 dbSNP
rs978826868 1923 dbSNP
rs1171107599 1925 dbSNP
rs1399522522 1928 dbSNP
rs566710084 1928 dbSNP
rs937539992 1929 dbSNP
rs927289393 1936 dbSNP
rs1395683147 1938 dbSNP
rs557246667 1939 dbSNP
rs761744563 1939 dbSNP
rs1360066356 1942 dbSNP
rs11537919 1944 dbSNP
rs1342601715 1945 dbSNP
rs1219690164 1946 dbSNP
rs988468325 1951 dbSNP
rs1316629455 1952 dbSNP
rs965957404 1960 dbSNP
rs1257259614 1967 dbSNP
rs1483253087 1968 dbSNP
rs1199382811 1969 dbSNP
rs1255030401 1973 dbSNP
rs542480016 1974 dbSNP
rs911804340 1978 dbSNP
rs931286410 1981 dbSNP
rs1422597366 1982 dbSNP
rs575010137 1987 dbSNP
rs1178067978 1993 dbSNP
rs1359817537 1996 dbSNP
rs918706215 1997 dbSNP
rs376396370 1998 dbSNP
rs528967167 1998 dbSNP
rs1283840994 2002 dbSNP
rs1443124549 2017 dbSNP
rs1362738987 2021 dbSNP
rs1372488227 2022 dbSNP
rs1306252618 2025 dbSNP
rs1297996584 2027 dbSNP
rs1434088632 2029 dbSNP
rs1027391168 2039 dbSNP
rs973219572 2043 dbSNP
rs1221440507 2045 dbSNP
rs962016282 2060 dbSNP
rs1167401478 2063 dbSNP
rs73324927 2076 dbSNP
rs760552702 2081 dbSNP
rs1231950613 2092 dbSNP
rs1014328637 2094 dbSNP
rs534894824 2099 dbSNP
rs1216818192 2106 dbSNP
rs113814724 2111 dbSNP
rs911686366 2116 dbSNP
rs772949685 2118 dbSNP
rs1413463820 2124 dbSNP
rs1484730965 2125 dbSNP
rs1192696559 2128 dbSNP
rs1425850832 2138 dbSNP
rs1432499005 2139 dbSNP
rs987356458 2145 dbSNP
rs1420553417 2149 dbSNP
rs537379222 2150 dbSNP
rs896109271 2163 dbSNP
rs6670 2165 dbSNP
rs1294465070 2168 dbSNP
rs372254810 2171 dbSNP
rs1249071721 2186 dbSNP
rs1300647806 2190 dbSNP
rs1355149106 2192 dbSNP
rs968777558 2193 dbSNP
rs1283198673 2196 dbSNP
rs1490508156 2203 dbSNP
rs191306208 2207 dbSNP
rs1247027480 2210 dbSNP
rs1267115340 2223 dbSNP
rs1219238557 2225 dbSNP
rs1320900529 2227 dbSNP
rs1240111122 2228 dbSNP
rs1043550911 2230 dbSNP
rs1158112778 2232 dbSNP
rs1284606363 2242 dbSNP
rs1224606531 2245 dbSNP
rs1407258980 2246 dbSNP
rs1050566 2249 dbSNP
rs1165960849 2251 dbSNP
rs1020068342 2254 dbSNP
rs1349612407 2259 dbSNP
rs1352545613 2263 dbSNP
rs1333876102 2264 dbSNP
rs1010399905 2272 dbSNP
rs11537916 2275 dbSNP
rs1446949410 2277 dbSNP
rs1278415571 2280 dbSNP
rs568845587 2286 dbSNP
rs913234313 2293 dbSNP
rs895991471 2294 dbSNP
rs944036652 2298 dbSNP
rs747874907 2300 dbSNP
rs1035828874 2306 dbSNP
rs1001802204 2312 dbSNP
rs778282974 2313 dbSNP
rs1295824645 2314 dbSNP
rs768266599 2318 dbSNP
rs550285802 2319 dbSNP
rs1434866965 2322 dbSNP
rs906134727 2326 dbSNP
rs1049106345 2327 dbSNP
rs1473908162 2335 dbSNP
rs1182606540 2336 dbSNP
rs1413530703 2338 dbSNP
rs529224094 2339 dbSNP
rs953227368 2342 dbSNP
rs1160285953 2347 dbSNP
rs897144229 2350 dbSNP
rs920405661 2351 dbSNP
rs1327630318 2356 dbSNP
rs11537915 2358 dbSNP
rs546821918 2370 dbSNP
rs1284496723 2376 dbSNP
rs911738805 2377 dbSNP
rs1157828861 2385 dbSNP
rs528225249 2391 dbSNP
rs1480498673 2396 dbSNP
rs987241445 2399 dbSNP
rs1195103261 2400 dbSNP
rs1189400213 2409 dbSNP
rs931798779 2424 dbSNP
rs138274919 2426 dbSNP
rs1242546184 2427 dbSNP
rs187967466 2431 dbSNP
rs1210335309 2435 dbSNP
rs979079748 2442 dbSNP
rs1331536173 2445 dbSNP
rs1266505820 2449 dbSNP
rs1227963293 2454 dbSNP
rs1324389563 2462 dbSNP
rs1476436750 2469 dbSNP
rs1424727243 2470 dbSNP
rs1477788937 2471 dbSNP
rs749734577 2472 dbSNP
rs1020333162 2476 dbSNP
rs1427865988 2477 dbSNP
rs988587954 2477 dbSNP
rs1334225721 2485 dbSNP
rs1374514139 2486 dbSNP
rs1412490136 2488 dbSNP
rs959751031 2495 dbSNP
rs959679219 2499 dbSNP
rs1340830620 2520 dbSNP
rs1226610171 2521 dbSNP
rs145733666 2525 dbSNP
rs1219937173 2527 dbSNP
rs879562345 2530 dbSNP
rs183802150 2532 dbSNP
rs780540444 2538 dbSNP
rs1264355697 2539 dbSNP
rs1446856645 2540 dbSNP
rs1191474149 2542 dbSNP
rs906021568 2549 dbSNP
rs1173748525 2552 dbSNP
rs200199792 2552 dbSNP
rs1027276662 2556 dbSNP
rs891920704 2559 dbSNP
rs1041507678 2560 dbSNP
rs1469933298 2562 dbSNP
rs1378922463 2563 dbSNP
rs1315932584 2566 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cguGAGUUUGACA--CCCCCGUGAa 5'
             || |:| |||    ||||||| 
Target 5' uauCUAAGAAUGUUCUAGGGCACUc 3'
3 - 27
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_000598 | 3UTR | AAAAUAUGUAUCUAAGAAUGUUCUAGGGCACUCUGGGAACCUAUAAAGGCAGGUAUUUCGGGCCCUCCUCUUCAGGAAUCUUCCUGAAGACAUGGCCCAGUCGAAGGCCCAGGAUGGCUUUUGCUGCGGCCCCGUGGGGUAGGAGGGACAGAGAGACAGGGAGAGUCAGCCUCCACAUUCAGAGGCAUCACAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_000598 | 3UTR | GUUCUAGGGCACUCUGGGAACCUAUAAAGGCAGGUAUUUCGGGCCCUCCUCUUCAGGAAUCUUCCUGAAGACAUGGCCCAGUCGAAGGCCCAGGAUGGCUUUUGCUGCGGCCCCGUGGGGUAGGAGGGACAGAGAGACAGGGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_000598 | 3UTR | AAAAUAUGUAUCUAAGAAUGUUCUAGGGCACUCUGGGAACCUAUAAAGGCAGGUAUUUCGGGCCCUCCUCUUCAGGAAUCUUCCUGAAGACAUGGCCCAGUCGAAGGCCCAGGAUGGCUUUUGCUGCGGCCCCGUGGGGUAGGAGGGACAGAGAGACAGGGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_000598 | 3UTR | AUGUUCUAGGGCACUCUGGGAACCUAUAAAGGCAGGUAUUUCGGGCCCUCCUCUUCAGGAAUCUUCCUGAAGACAUGGCCCAGUCGAAGGCCCAGGAUGGCUUUUGCUGCGGCCCCGUGGGGUAGGAGGGACAGAGAGACAGGGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_000598 | 3UTR | UGUUCUAGGGCACUCUGGGAACCUAUAAAGGCAGGUAUUUCGGGCCCUCCUCUUCAGGAAUCUUCCUGAAGACAUGGCCCAGUCGAAGGCCCAGGAUGGCUUUUGCUGCGGCCCCGUGGGGUAGGAGGGACAGAGAGACAGGGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_000598 | 3UTR | UAAGAAUGUUCUAGGGCACUCUGGGAACCUAUAAAGGCAGGUAUUUCGGGCCCUCCUCUUCAGGAAUCUUCCUGAAGACAUGGCCCAGUCGAAGGCCCAGGAUGGCUUUUGCUGCGGCCCCGUGGGGUAGGAGGGACAGAGAGACAGGGAGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000381086.5 | 3UTR | UGUAUCUAAGAAUGUUCUAGGGCACUCUGGGAACC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
42 hsa-miR-371b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055410 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 6
MIRT065883 GDF11 growth differentiation factor 11 2 2
MIRT183507 BTG2 BTG anti-proliferation factor 2 2 2
MIRT277106 CDCA8 cell division cycle associated 8 2 2
MIRT300592 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT441361 ZNF75A zinc finger protein 75a 2 2
MIRT442692 COX15 COX15, cytochrome c oxidase assembly homolog 2 2
MIRT443388 CHML CHM like, Rab escort protein 2 2 2
MIRT443571 EVX2 even-skipped homeobox 2 2 2
MIRT443671 FLT1 fms related tyrosine kinase 1 2 2
MIRT465524 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT492169 STAT3 signal transducer and activator of transcription 3 2 2
MIRT496992 TMEM231 transmembrane protein 231 2 2
MIRT509012 FBXO6 F-box protein 6 2 2
MIRT509766 NCAPD2 non-SMC condensin I complex subunit D2 2 2
MIRT514033 BNIP2 BCL2 interacting protein 2 2 2
MIRT524995 AFF1 AF4/FMR2 family member 1 2 10
MIRT529899 C1orf64 steroid receptor associated and regulated protein 2 2
MIRT530045 SMC1A structural maintenance of chromosomes 1A 2 2
MIRT534479 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT535065 PPP2R5D protein phosphatase 2 regulatory subunit B'delta 2 4
MIRT539151 AREL1 apoptosis resistant E3 ubiquitin protein ligase 1 2 2
MIRT540937 OIP5 Opa interacting protein 5 2 2
MIRT546360 SYNM synemin 2 2
MIRT553436 TPM3 tropomyosin 3 2 2
MIRT556278 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT564092 NSA2 NSA2, ribosome biogenesis homolog 2 2
MIRT568376 ATXN1 ataxin 1 2 2
MIRT572255 ANKRD52 ankyrin repeat domain 52 2 2
MIRT572453 TRIM10 tripartite motif containing 10 2 2
MIRT610741 NUDT16 nudix hydrolase 16 2 4
MIRT622754 PHACTR2 phosphatase and actin regulator 2 2 2
MIRT627220 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT629555 SPN sialophorin 2 2
MIRT640288 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT651922 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT684290 CDK9 cyclin dependent kinase 9 2 2
MIRT700230 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT702748 IGFBP3 insulin like growth factor binding protein 3 2 2
MIRT711110 TBC1D21 TBC1 domain family member 21 2 2
MIRT716402 SEPT5 septin 5 2 2
MIRT723677 CTC1 CST telomere replication complex component 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-371b Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (SW1990)
hsa-miR-371b-3p Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (SW1990)
hsa-miR-371b-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-371b-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM36)

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