pre-miRNA Information
pre-miRNA hsa-mir-3160-1   
Genomic Coordinates chr11: 46451805 - 46451889
Description Homo sapiens miR-3160-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3160-2   
Genomic Coordinates chr11: 46451807 - 46451887
Description Homo sapiens miR-3160-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3160-3p
Sequence 54| AGAGCUGAGACUAGAAAGCCCA |75
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30582333 1 COSMIC
COSN1535547 3 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1396368683 1 dbSNP
rs1162409303 2 dbSNP
rs1404378453 12 dbSNP
rs1171960732 14 dbSNP
rs1324633375 16 dbSNP
rs1187765019 16 dbSNP
rs1300058326 19 dbSNP
rs1432898407 21 dbSNP
rs1011279103 22 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol HIF1A   
Synonyms HIF-1-alpha, HIF-1A, HIF-1alpha, HIF1, HIF1-ALPHA, MOP1, PASD8, bHLHe78
Description hypoxia inducible factor 1 alpha subunit
Transcript NM_181054   
Other Transcripts NM_001530   
Expression
Putative miRNA Targets on HIF1A
3'UTR of HIF1A
(miRNA target sites are highlighted)
>HIF1A|NM_181054|3'UTR
   1 CATGTAGACTGCTGGGGCAATCAATGGATGAAAGTGGATTACCACAGCTGACCAGTTATGATTGTGAAGTTAATGCTCCT
  81 ATACAAGGCAGCAGAAACCTACTGCAGGGTGAAGAATTACTCAGAGCTTTGGATCAAGTTAACTGAGCTTTTTCTTAATT
 161 TCATTCCTTTTTTTGGACACTGGTGGCTCATTACCTAAAGCAGTCTATTTATATTTTCTACATCTAATTTTAGAAGCCTG
 241 GCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACTTAATTTACATTAATGCTCTTTTTTAGTAT
 321 GTTCTTTAATGCTGGATCACAGACAGCTCATTTTCTCAGTTTTTTGGTATTTAAACCATTGCATTGCAGTAGCATCATTT
 401 TAAAAAATGCACCTTTTTATTTATTTATTTTTGGCTAGGGAGTTTATCCCTTTTTCGAATTATTTTTAAGAAGATGCCAA
 481 TATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACCTTTTTTTTCACATT
 561 TTACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATTTTCTTAAAAAATACCAGCAGT
 641 TACTCATGGAATATATTCTGCGTTTATAAAACTAGTTTTTAAGAAGAAATTTTTTTTGGCCTATGAAATTGTTAAACCTG
 721 GAACATGACATTGTTAATCATATAATAATGATTCTTAAATGCTGTATGGTTTATTATTTAAATGGGTAAAGCCATTTACA
 801 TAATATAGAAAGATATGCATATATCTAGAAGGTATGTGGCATTTATTTGGATAAAATTCTCAATTCAGAGAAATCATCTG
 881 ATGTTTCTATAGTCACTTTGCCAGCTCAAAAGAAAACAATACCCTATGTAGTTGTGGAAGTTTATGCTAATATTGTGTAA
 961 CTGATATTAAACCTAAATGTTCTGCCTACCCTGTTGGTATAAAGATATTTTGAGCAGACTGTAAACAAGAAAAAAAAAAT
1041 CATGCATTCTTAGCAAAATTGCCTAGTATGTTAATTTGCTCAAAATACAATGTTTGATTTTATGCACTTTGTCGCTATTA
1121 ACATCCTTTTTTTCATGTAGATTTCAATAATTGAGTAATTTTAGAAGCATTATTTTAGGAATATATAGTTGTCACAGTAA
1201 ATATCTTGTTTTTTCTATGTACATTGTACAAATTTTTCATTCCTTTTGCTCTTTGTGGTTGGATCTAACACTAACTGTAT
1281 TGTTTTGTTACATCAAATAAACATCTTCTGTGGACCAGGCAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' accCGAA-AGAUCAG------AGUCGAGa 5'
             |:|| | |||||       |||||| 
Target 5' gatGTTTCTATAGTCACTTTGCCAGCTCa 3'
880 - 908 125.00 -10.60
2
miRNA  3' accCGA-AAGAUCAGAGUCGAGa 5'
             |||  |:|  ||||||:|: 
Target 5' acaGCTCATTT--TCTCAGTTTt 3'
343 - 363 123.00 -12.00
3
miRNA  3' accCGAA----AGAUCA---GAGUCGAGa 5'
             ||||    || |||   || ||||: 
Target 5' agaGCTTTGGATCAAGTTAACTGAGCTTt 3'
123 - 151 113.00 -10.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
709474 18 ClinVar
COSM8236443 25 COSMIC
COSM2247247 35 COSMIC
COSM956814 48 COSMIC
COSM2247248 50 COSMIC
COSM1159287 53 COSMIC
COSM9470578 72 COSMIC
COSM3386615 73 COSMIC
COSM7702681 79 COSMIC
COSM8720098 82 COSMIC
COSM1158010 89 COSMIC
COSM4577931 90 COSMIC
COSM6328155 92 COSMIC
COSM4636919 104 COSMIC
COSN31598380 154 COSMIC
COSN22510195 156 COSMIC
COSN30146484 163 COSMIC
COSN30479229 168 COSMIC
COSN5853537 175 COSMIC
COSN20389672 179 COSMIC
COSN31497155 184 COSMIC
COSN20087972 192 COSMIC
COSN30511452 209 COSMIC
COSN26307819 237 COSMIC
COSN30166240 249 COSMIC
COSN31513196 252 COSMIC
COSN21620339 254 COSMIC
COSN24313377 271 COSMIC
COSN20111388 277 COSMIC
COSN20066277 279 COSMIC
COSN30524741 305 COSMIC
COSN31535736 366 COSMIC
COSN26581982 390 COSMIC
COSN31595948 448 COSMIC
COSN31569975 458 COSMIC
COSN26586676 500 COSMIC
COSN31611055 608 COSMIC
COSN30541333 683 COSMIC
COSN18936091 787 COSMIC
COSN31585350 813 COSMIC
COSN23687473 821 COSMIC
COSN8846910 826 COSMIC
COSN31547288 871 COSMIC
COSN31606639 871 COSMIC
COSN9089004 881 COSMIC
COSN31484977 897 COSMIC
COSN29683013 1040 COSMIC
COSN21324998 1080 COSMIC
COSN1169739 1134 COSMIC
COSN31593408 1215 COSMIC
COSN31516638 1232 COSMIC
COSN31563647 1316 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs539549822 5 dbSNP
rs772563698 15 dbSNP
rs74054863 18 dbSNP
rs761301966 25 dbSNP
rs764342882 27 dbSNP
rs1434107649 30 dbSNP
rs777173441 32 dbSNP
rs148149561 45 dbSNP
rs762084100 46 dbSNP
rs1332732959 48 dbSNP
rs1400361157 51 dbSNP
rs1802821 52 dbSNP
rs765575235 56 dbSNP
rs545874061 60 dbSNP
rs762942023 63 dbSNP
rs758032673 64 dbSNP
rs1294810529 71 dbSNP
rs1315936022 72 dbSNP
rs1220369809 75 dbSNP
rs1354416944 79 dbSNP
rs1002016670 80 dbSNP
rs1258843938 82 dbSNP
rs1334246808 84 dbSNP
rs766542880 85 dbSNP
rs140173615 90 dbSNP
rs754986249 92 dbSNP
rs780928465 93 dbSNP
rs559651239 99 dbSNP
rs145319047 103 dbSNP
rs1325345716 105 dbSNP
rs1172010116 111 dbSNP
rs1295805684 112 dbSNP
rs1423792468 115 dbSNP
rs1434851318 120 dbSNP
rs1366526923 127 dbSNP
rs1404187796 128 dbSNP
rs1162266976 129 dbSNP
rs777407997 132 dbSNP
rs759636243 142 dbSNP
rs1389320297 145 dbSNP
rs770333662 146 dbSNP
rs371720529 148 dbSNP
rs1387964413 149 dbSNP
rs1338114141 152 dbSNP
rs778533208 153 dbSNP
rs747441284 156 dbSNP
rs1026312234 157 dbSNP
rs552985977 165 dbSNP
rs371778537 166 dbSNP
rs769316153 167 dbSNP
rs1292325060 168 dbSNP
rs779790779 168 dbSNP
rs780828413 168 dbSNP
rs1322499060 169 dbSNP
rs1215298795 173 dbSNP
rs1284371531 178 dbSNP
rs1489469817 181 dbSNP
rs777085247 182 dbSNP
rs762278418 186 dbSNP
rs1472198228 188 dbSNP
rs2057482 192 dbSNP
rs773559645 194 dbSNP
rs763289041 196 dbSNP
rs1210541354 200 dbSNP
rs542082268 202 dbSNP
rs750111993 208 dbSNP
rs964865492 222 dbSNP
rs978881402 231 dbSNP
rs1272811246 236 dbSNP
rs775751381 241 dbSNP
rs1343396726 242 dbSNP
rs561963703 247 dbSNP
rs1272414694 248 dbSNP
rs983334130 253 dbSNP
rs1033251976 254 dbSNP
rs769353565 258 dbSNP
rs1406298050 263 dbSNP
rs530984621 263 dbSNP
rs1203608510 264 dbSNP
rs549497743 268 dbSNP
rs1307099949 270 dbSNP
rs1249381070 271 dbSNP
rs199915104 273 dbSNP
rs397897404 273 dbSNP
rs5809121 273 dbSNP
rs913568799 283 dbSNP
rs563032969 292 dbSNP
rs1477633716 294 dbSNP
rs949034822 299 dbSNP
rs981877125 300 dbSNP
rs949635893 307 dbSNP
rs1199642529 325 dbSNP
rs1249880441 333 dbSNP
rs532181605 337 dbSNP
rs551891037 355 dbSNP
rs1483509684 356 dbSNP
rs982365060 360 dbSNP
rs926344697 373 dbSNP
rs1199119871 377 dbSNP
rs937859002 380 dbSNP
rs926624286 385 dbSNP
rs1224815816 389 dbSNP
rs1348150414 390 dbSNP
rs938038646 399 dbSNP
rs1200937897 402 dbSNP
rs1037532137 403 dbSNP
rs1331894483 404 dbSNP
rs1413747297 419 dbSNP
rs1053786420 437 dbSNP
rs1170221751 456 dbSNP
rs893855163 457 dbSNP
rs763243537 458 dbSNP
rs1432176686 460 dbSNP
rs1309109880 463 dbSNP
rs1041908240 464 dbSNP
rs1473015674 478 dbSNP
rs1365494899 481 dbSNP
rs565632163 483 dbSNP
rs1403254921 486 dbSNP
rs151303260 487 dbSNP
rs1442274612 490 dbSNP
rs1297315230 492 dbSNP
rs1279938106 502 dbSNP
rs1008558586 508 dbSNP
rs17099190 518 dbSNP
rs1019564762 521 dbSNP
rs1266893123 522 dbSNP
rs140525186 530 dbSNP
rs1293213243 547 dbSNP
rs996483325 547 dbSNP
rs1026672127 555 dbSNP
rs1308966626 556 dbSNP
rs1048073800 558 dbSNP
rs1291015828 559 dbSNP
rs952532711 564 dbSNP
rs890474693 593 dbSNP
rs1401402955 594 dbSNP
rs1410435090 597 dbSNP
rs1161740541 598 dbSNP
rs1472599652 599 dbSNP
rs1246737090 602 dbSNP
rs1185844172 608 dbSNP
rs982562264 613 dbSNP
rs1248001518 615 dbSNP
rs1485359835 632 dbSNP
rs186070865 634 dbSNP
rs1184337665 636 dbSNP
rs1008828153 640 dbSNP
rs1016170938 640 dbSNP
rs970960593 648 dbSNP
rs1017666271 649 dbSNP
rs900581021 662 dbSNP
rs1356614289 663 dbSNP
rs982312779 665 dbSNP
rs1432702227 675 dbSNP
rs1417832408 681 dbSNP
rs1321218907 682 dbSNP
rs112980101 690 dbSNP
rs1431556853 704 dbSNP
rs537228141 710 dbSNP
rs1346981030 713 dbSNP
rs1000351887 718 dbSNP
rs926907138 723 dbSNP
rs751806225 725 dbSNP
rs1165838369 735 dbSNP
rs1448086868 741 dbSNP
rs1305448254 742 dbSNP
rs1390096297 743 dbSNP
rs1451785185 746 dbSNP
rs1169620714 749 dbSNP
rs1385201243 757 dbSNP
rs1033135776 762 dbSNP
rs1225899795 769 dbSNP
rs1293545948 769 dbSNP
rs1423265139 771 dbSNP
rs34873475 778 dbSNP
rs1341271847 783 dbSNP
rs1325634233 787 dbSNP
rs956362576 792 dbSNP
rs8019084 794 dbSNP
rs762252347 801 dbSNP
rs945443994 815 dbSNP
rs1042515017 817 dbSNP
rs1287270892 822 dbSNP
rs767862625 837 dbSNP
rs1428202134 847 dbSNP
rs1370274736 867 dbSNP
rs1228951010 872 dbSNP
rs1314065298 879 dbSNP
rs1357227551 887 dbSNP
rs981762514 890 dbSNP
rs1430768103 891 dbSNP
rs1248034618 893 dbSNP
rs926396778 900 dbSNP
rs1040910292 902 dbSNP
rs879291501 913 dbSNP
rs996771147 922 dbSNP
rs973110354 926 dbSNP
rs952877554 928 dbSNP
rs920448595 933 dbSNP
rs929103345 935 dbSNP
rs1310343873 936 dbSNP
rs1048503409 937 dbSNP
rs1047656959 953 dbSNP
rs888154356 954 dbSNP
rs1346293284 962 dbSNP
rs190860864 967 dbSNP
rs1408156600 985 dbSNP
rs1350131716 994 dbSNP
rs1299083231 995 dbSNP
rs1242865466 996 dbSNP
rs944737744 1000 dbSNP
rs1463890765 1001 dbSNP
rs539881963 1005 dbSNP
rs773972883 1016 dbSNP
rs1357928211 1020 dbSNP
rs1443359225 1027 dbSNP
rs1176055068 1028 dbSNP
rs1470597308 1029 dbSNP
rs1015368010 1030 dbSNP
rs1430709945 1030 dbSNP
rs971292665 1030 dbSNP
rs1165437560 1040 dbSNP
rs1039002996 1041 dbSNP
rs1178692650 1042 dbSNP
rs1414641588 1054 dbSNP
rs750960087 1073 dbSNP
rs900632992 1082 dbSNP
rs534696980 1085 dbSNP
rs867054308 1090 dbSNP
rs180837209 1091 dbSNP
rs1033476211 1093 dbSNP
rs1308063073 1106 dbSNP
rs573160553 1111 dbSNP
rs891975089 1114 dbSNP
rs989725139 1115 dbSNP
rs1436031645 1119 dbSNP
rs915224690 1120 dbSNP
rs1408971422 1124 dbSNP
rs186481938 1126 dbSNP
rs978566180 1127 dbSNP
rs1010804073 1132 dbSNP
rs370476266 1133 dbSNP
rs1364013357 1134 dbSNP
rs1160909738 1137 dbSNP
rs1421701348 1142 dbSNP
rs114812759 1148 dbSNP
rs1024591004 1149 dbSNP
rs756658648 1152 dbSNP
rs972050428 1154 dbSNP
rs1003250403 1157 dbSNP
rs1380222271 1165 dbSNP
rs1450147761 1166 dbSNP
rs1033348128 1186 dbSNP
rs574800089 1193 dbSNP
rs1206902487 1198 dbSNP
rs958994442 1203 dbSNP
rs1350125414 1205 dbSNP
rs778376665 1208 dbSNP
rs1241371052 1209 dbSNP
rs911949361 1209 dbSNP
rs944788994 1209 dbSNP
rs920314952 1218 dbSNP
rs1314742202 1220 dbSNP
rs1385575406 1224 dbSNP
rs1433694893 1247 dbSNP
rs752265561 1252 dbSNP
rs983676896 1259 dbSNP
rs555623016 1262 dbSNP
rs921108454 1264 dbSNP
rs1446294210 1287 dbSNP
rs1269456542 1289 dbSNP
rs765677998 1292 dbSNP
rs1447522222 1300 dbSNP
rs1262471493 1302 dbSNP
rs1206996164 1309 dbSNP
rs561456816 1312 dbSNP
rs1487616499 1317 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' accCGAA-AGAUCAG------AGUCGAGa 5'
             |:|| | |||||       |||||| 
Target 5' --uGUUUCUAUAGUCACUUUGCCAGCUCa 3'
1 - 27
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM4903825
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID14_NS
Location of target site NM_001530 | 3UTR | AUGGUUUAUUAUUUAAAUGGGUAAAGCCAUUUACAUAAUAUAGAAAGAUAUGCAUAUAUCUAGAAGGUAUGUGGCAUUUAUUUGGAUAAAAUUCUCAAUUCAGAGAAAUCAUCUGAUGUUUCUAUAGUCACUUUGCCAGCUCAAAAGAAAACAAUACCCUAUGUAGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_001530 | 3UTR | GCUGUAUGGUUUAUUAUUUAAAUGGGUAAAGCCAUUUACAUAAUAUAGAAAGAUAUGCAUAUAUCUAGAAGGUAUGUGGCAUUUAUUUGGAUAAAAUUCUCAAUUCAGAGAAAUCAUCUGAUGUUUCUAUAGUCACUUUGCCAGCUCAAAAGAAAACAAUACCCUAUGUAGUUGUGGAAGUUUAUGCUAAUAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_001530 | 3UTR | UUUAUUUGGAUAAAAUUCUCAAUUCAGAGAAAUCAUCUGAUGUUUCUAUAGUCACUUUGCCAGCUCAAAAGAAAACAAUACCCUAUGUAGUUGUGGAAGUUUAUGCUAAUAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_001530 | 3UTR | AGAUAUGCAUAUAUCUAGAAGGUAUGUGGCAUUUAUUUGGAUAAAAUUCUCAAUUCAGAGAAAUCAUCUGAUGUUUCUAUAGUCACUUUGCCAGCUCAAAAGAAAACAAUACCCUAUGUAGUUGUGGAAGUUUAUGCUAAUAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_001530 | 3UTR | AAAGAUAUGCAUAUAUCUAGAAGGUAUGUGGCAUUUAUUUGGAUAAAAUUCUCAAUUCAGAGAAAUCAUCUGAUGUUUCUAUAGUCACUUUGCCAGCUCAAAAGAAAACAAUACCCUAUGUAGUUGUGGAAGUUUAUGCUAAUAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_001530 | 3UTR | GGCAUUUAUUUGGAUAAAAUUCUCAAUUCAGAGAAAUCAUCUGAUGUUUCUAUAGUCACUUUGCCAGCUCAAAAGAAAACAAUACCCUAUGUAGUUGUGGAAGUUUAUGCUAAUAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_001530 | 3UTR | AUUUAUUUGGAUAAAAUUCUCAAUUCAGAGAAAUCAUCUGAUGUUUCUAUAGUCACUUUGCCAGCUCAAAAGAAAACAAUACCCUAUGUAGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000323441.6 | 3UTR | UGUUUCUAUAGUCACUUUGCCAGCUCAAAAGAAAAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
118 hsa-miR-3160-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT066658 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT075318 SF3B3 splicing factor 3b subunit 3 2 4
MIRT077083 EIF1 eukaryotic translation initiation factor 1 2 2
MIRT100381 HSPA1B heat shock protein family A (Hsp70) member 1B 2 6
MIRT135259 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT184913 ZNF268 zinc finger protein 268 2 2
MIRT218862 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT446580 FPR2 formyl peptide receptor 2 2 2
MIRT448834 FGD4 FYVE, RhoGEF and PH domain containing 4 2 2
MIRT449455 RNF13 ring finger protein 13 2 2
MIRT452284 CARD8 caspase recruitment domain family member 8 2 2
MIRT452628 FAM162A family with sequence similarity 162 member A 2 2
MIRT453454 GLG1 golgi glycoprotein 1 2 2
MIRT454188 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 6
MIRT454434 GTF2F1 general transcription factor IIF subunit 1 2 2
MIRT454575 NT5DC3 5'-nucleotidase domain containing 3 2 2
MIRT455555 TRAF1 TNF receptor associated factor 1 2 6
MIRT455841 MPL MPL proto-oncogene, thrombopoietin receptor 2 6
MIRT455969 BCAS4 breast carcinoma amplified sequence 4 2 4
MIRT456805 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457320 DUSP19 dual specificity phosphatase 19 2 2
MIRT457366 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT457684 ZNF587 zinc finger protein 587 2 2
MIRT458158 LYRM4 LYR motif containing 4 2 6
MIRT458641 SGPP2 sphingosine-1-phosphate phosphatase 2 2 2
MIRT459134 FADS6 fatty acid desaturase 6 2 2
MIRT459153 NARF nuclear prelamin A recognition factor 2 4
MIRT460460 NOM1 nucleolar protein with MIF4G domain 1 2 4
MIRT460974 STK17B serine/threonine kinase 17b 2 2
MIRT461439 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
MIRT461507 NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 2 2
MIRT462490 GSR glutathione-disulfide reductase 2 2
MIRT462638 PHF5A PHD finger protein 5A 2 2
MIRT463279 ZFX zinc finger protein, X-linked 2 2
MIRT463360 ZFAND4 zinc finger AN1-type containing 4 2 2
MIRT465777 TMOD3 tropomodulin 3 2 2
MIRT466143 TMEM120B transmembrane protein 120B 2 2
MIRT468401 SETD3 SET domain containing 3 2 2
MIRT468998 RNPS1 RNA binding protein with serine rich domain 1 2 2
MIRT471574 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT472108 NME2 NME/NM23 nucleoside diphosphate kinase 2 2 2
MIRT472125 NME1-NME2 NME1-NME2 readthrough 2 2
MIRT473020 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT473083 MORN4 MORN repeat containing 4 2 2
MIRT475598 HMGB2 high mobility group box 2 2 4
MIRT475937 GXYLT2 glucoside xylosyltransferase 2 2 8
MIRT476117 GPR157 G protein-coupled receptor 157 2 2
MIRT476406 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT478003 DNAL1 dynein axonemal light chain 1 2 2
MIRT487969 IQSEC2 IQ motif and Sec7 domain 2 2 2
MIRT489418 TUBB2A tubulin beta 2A class IIa 2 2
MIRT491522 IL10RA interleukin 10 receptor subunit alpha 2 2
MIRT492673 PLEC plectin 2 2
MIRT493545 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT513085 USP9X ubiquitin specific peptidase 9, X-linked 2 2
MIRT514009 CECR2 CECR2, histone acetyl-lysine reader 2 4
MIRT516683 ZNF860 zinc finger protein 860 2 2
MIRT518392 ZNF250 zinc finger protein 250 2 2
MIRT522683 LUZP1 leucine zipper protein 1 2 6
MIRT524488 CEP97 centrosomal protein 97 2 2
MIRT527457 CLEC12B C-type lectin domain family 12 member B 2 2
MIRT527705 IL17REL interleukin 17 receptor E like 2 2
MIRT531647 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT532381 UMPS uridine monophosphate synthetase 2 2
MIRT532588 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 2 2
MIRT533555 TPM4 tropomyosin 4 2 2
MIRT548371 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 4
MIRT550250 PVR poliovirus receptor 2 2
MIRT552555 ZFP36L2 ZFP36 ring finger protein like 2 2 4
MIRT554113 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 2 2
MIRT554131 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT561344 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT561638 RUNX3 runt related transcription factor 3 2 2
MIRT566497 PBX2P1 PBX homeobox 2 pseudogene 1 2 2
MIRT570583 OTUD7B OTU deubiquitinase 7B 2 2
MIRT572731 MCTS1 MCTS1, re-initiation and release factor 2 2
MIRT574041 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT575231 Fut1 fucosyltransferase 1 2 2
MIRT606811 BICD2 BICD cargo adaptor 2 2 2
MIRT621016 CLSTN3 calsyntenin 3 2 2
MIRT637852 PDCL3 phosducin like 3 2 2
MIRT640477 ZNF557 zinc finger protein 557 2 2
MIRT642827 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT643887 IMP4 IMP4, U3 small nucleolar ribonucleoprotein 2 2
MIRT664874 PCNXL2 pecanex homolog 2 2 2
MIRT680528 PRIM2 DNA primase subunit 2 2 2
MIRT680648 KIAA1456 KIAA1456 2 2
MIRT680807 ZNF578 zinc finger protein 578 2 2
MIRT680921 STX2 syntaxin 2 2 2
MIRT681112 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT681147 INTS7 integrator complex subunit 7 2 2
MIRT681966 TFCP2 transcription factor CP2 2 2
MIRT684316 GTF3C4 general transcription factor IIIC subunit 4 2 2
MIRT684906 GSG2 histone H3 associated protein kinase 2 2
MIRT685499 MED16 mediator complex subunit 16 2 2
MIRT685929 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686875 SLC25A32 solute carrier family 25 member 32 2 2
MIRT688204 FNIP1 folliculin interacting protein 1 2 2
MIRT688791 CCNB1 cyclin B1 2 2
MIRT689227 RPS19 ribosomal protein S19 2 2
MIRT690470 ZNF33A zinc finger protein 33A 2 2
MIRT691982 PLCXD1 phosphatidylinositol specific phospholipase C X domain containing 1 2 2
MIRT694006 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694529 TRIM72 tripartite motif containing 72 2 2
MIRT695420 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT695784 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT697799 UBXN2A UBX domain protein 2A 2 2
MIRT698275 TMEM2 transmembrane protein 2 2 2
MIRT698317 TMEM136 transmembrane protein 136 2 2
MIRT699971 RREB1 ras responsive element binding protein 1 2 2
MIRT700717 PNO1 partner of NOB1 homolog 2 2
MIRT701721 MTMR12 myotubularin related protein 12 2 2
MIRT701879 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT702959 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT706178 ZNF716 zinc finger protein 716 2 2
MIRT706463 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT718154 TTC33 tetratricopeptide repeat domain 33 2 2
MIRT718711 ANKRD18A ankyrin repeat domain 18A 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3160-3p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-3160-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-3160-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3160-3p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-3160-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3160-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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