pre-miRNA Information
pre-miRNA hsa-mir-1303   
Genomic Coordinates chr5: 154685776 - 154685861
Synonyms MIRN1303, hsa-mir-1303, MIR1303
Description Homo sapiens miR-1303 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1303
Sequence 52| UUUAGAGACGGGGUCUUGCUCU |73
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 5 + 154685830 23291724, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs370437195 6 dbSNP
rs1195001383 7 dbSNP
rs546614687 8 dbSNP
rs762579883 9 dbSNP
rs766041486 10 dbSNP
rs751079975 12 dbSNP
rs888516744 13 dbSNP
rs566454487 14 dbSNP
rs766973220 15 dbSNP
rs1474274822 17 dbSNP
rs753222192 18 dbSNP
rs1230907999 19 dbSNP
rs756552638 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol HEATR5A   
Synonyms C14orf125
Description HEAT repeat containing 5A
Transcript NM_015473   
Expression
Putative miRNA Targets on HEATR5A
3'UTR of HEATR5A
(miRNA target sites are highlighted)
>HEATR5A|NM_015473|3'UTR
   1 TTTTTTTTTTGGAATAGTAAGCACCTTAATATAATAAATACTTGATCATTGCCTTTGGTGACAAAAGGGACATTGTAGAC
  81 ACAAGTGCCCTTAGAGGTCTAGTTGATTGTTTTACCTTAAATAGCTGTGACTCTTCAAAGTAACAGCATACTTAACATTT
 161 TTGTGTGTGTGCGTGGGGTTTGTGTTTTGTTTTGTTTTGTTTTTCTATTTAAAAAGACAATGGAGCTAACTTGCCAGGAA
 241 TTTTAAGAAAGTGCTAAAGAACTAAACTTACTAAACAATCCACTGCTTTAAAAATGAAATGAATTTCTTCTAACAGTCCA
 321 TACATATGTGGTATACTTAATACTGTGACAGATATAAATATGACTCTAGTGTAAATTATCTGCACTAATATTGTATCCCA
 401 ATTGCTGATTTAAAATTCTGCTTTGGCCCGGCACAGTGGCTCATCCCTGTAATTCCAGCACTTTGGAAGGCCAAGGCGGG
 481 CGGATCACGAGGTCGGGAGTTTGAGACCAGCCTGACCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGC
 561 CGGGTGTGGTGGCACACACCTGTAATCCCAGCTACTCAGGAGGCCGAGGCAGGAAAATCGCTTGAACCTGGCAGGCAGAG
 641 GTTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCATCTAAAAAAAAAAAAAAAAA
 721 ATTCTGCCTTATTCAGTAATTGTATTAAACTTTCTCTGATTTCTCCAAGAAGATAAAATGATTGGAGAGCTATTTAGGAA
 801 ACCTGGTCTAGGATTATCCAGTATACAATAGTACAAATTACTTACAGCCTTACAGTGCAACATAAGATTTGGTGTCTATA
 881 TCATGGTTTTCCACCATCTTTTGGTTTAGTTTATATTGGGTTCAGAAATTGAGTCTTACTCATTTTAAATAGAATAAGCC
 961 ATTTCCACTATTTTTCAAATGGATTTTTCTGTTTACCTCTGTTCTTACCAATTTTGTTCATTTTCATTTGTGGCAAACAT
1041 TTGTATCAATGAGTTTTAACCTAGGTTCATATCTACATTGTATTTAGATCAACTATGGGTTTATATAAATGCCAAATTTA
1121 GTACAACAAATTTAGGTCATCAGGTGAATACAAGTATTTTTTTTAACAGGAAACATTTTATTATAGAAAAAAGATTAATG
1201 ATAAAGTCATATTGGTTGAAAAATATTTTTTAACTGTGTTCATGATTGTTGATTCTCCTTCTACTTCAGTGTTATACTGT
1281 GTGAATCAAGCACTGTGTCAAAACAGAGCATTTCCCTCTTAAAAATTACAAACCGAAGTGATAGAAGCATGTCAGAATTG
1361 AGAAGACATTTTGAAGCAAGAACAATGTGATGTACCTATTTTATTATGTTTGTATATAAATACTATTGTAAATTGTTCAG
1441 AGTGAAAACATTTGACAAACTCTAACACTACAATCATTTTTTCTAAATTACATAAATAAAGCTAATTTTCATTATCAAAA
1521 AAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucUCGUUCUGGGGCAGAGAUuu 5'
            :|::| ||||||||||||  
Target 5' atGGTGAAACCCCGTCTCTAct 3'
521 - 542 160.00 -21.80
2
miRNA  3' ucuCGUUCUGGGGCAGAGAUUu 5'
             |:|  |  |: |||||:| 
Target 5' attGTATTAAACTTTCTCTGAt 3'
739 - 760 131.00 -7.30
3
miRNA  3' ucucGUUCUGGGGCAGAGAUUu 5'
              |||  | :: |:||||| 
Target 5' actaCAA-TCATTTTTTCTAAa 3'
1467 - 1487 129.00 -6.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN19659078 1 COSMIC
COSN20123916 1 COSMIC
COSN26978579 62 COSMIC
COSN30140359 96 COSMIC
COSN30102405 102 COSMIC
COSN30123484 103 COSMIC
COSN5747783 118 COSMIC
COSN30181310 126 COSMIC
COSN31578004 145 COSMIC
COSN23681148 183 COSMIC
COSN8827837 387 COSMIC
COSN17181966 468 COSMIC
COSN8151756 481 COSMIC
COSN21068800 624 COSMIC
COSN31893581 703 COSMIC
COSN7226986 722 COSMIC
COSN15662979 1360 COSMIC
COSN8549054 1412 COSMIC
COSN7226985 1460 COSMIC
COSN6246350 1492 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1283250268 1 dbSNP
rs369998400 5 dbSNP
rs368151363 11 dbSNP
rs56060018 11 dbSNP
rs757723316 11 dbSNP
rs771904532 11 dbSNP
rs774884600 11 dbSNP
rs1418187319 15 dbSNP
rs1341816850 18 dbSNP
rs556476037 29 dbSNP
rs1480777504 31 dbSNP
rs1399972167 34 dbSNP
rs1195055002 37 dbSNP
rs1181528176 40 dbSNP
rs745509415 41 dbSNP
rs375824559 44 dbSNP
rs770415599 45 dbSNP
rs1390380051 50 dbSNP
rs1409906711 58 dbSNP
rs1278350595 72 dbSNP
rs1159137844 73 dbSNP
rs1228238644 77 dbSNP
rs1377536965 82 dbSNP
rs1389659199 85 dbSNP
rs1403424758 97 dbSNP
rs368350492 98 dbSNP
rs1325052890 108 dbSNP
rs1345722247 116 dbSNP
rs1408881843 124 dbSNP
rs147946608 126 dbSNP
rs758507803 129 dbSNP
rs1241729877 158 dbSNP
rs1280653868 170 dbSNP
rs977382179 172 dbSNP
rs749175601 173 dbSNP
rs371661207 174 dbSNP
rs777911336 177 dbSNP
rs11850386 183 dbSNP
rs1473614764 202 dbSNP
rs529392954 204 dbSNP
rs766887804 204 dbSNP
rs911862167 204 dbSNP
rs953623570 204 dbSNP
rs959266035 209 dbSNP
rs193176387 220 dbSNP
rs1428689146 231 dbSNP
rs1305811268 235 dbSNP
rs534130020 236 dbSNP
rs572944305 254 dbSNP
rs1411479989 269 dbSNP
rs1183546043 271 dbSNP
rs1003692343 281 dbSNP
rs1243308340 282 dbSNP
rs1023712956 300 dbSNP
rs1237384130 302 dbSNP
rs1196361902 303 dbSNP
rs557981112 307 dbSNP
rs1196426083 316 dbSNP
rs780873120 319 dbSNP
rs1251541955 321 dbSNP
rs1011920808 324 dbSNP
rs1385569109 327 dbSNP
rs1448647958 333 dbSNP
rs951770744 336 dbSNP
rs1391657895 340 dbSNP
rs1462221830 353 dbSNP
rs1171451551 354 dbSNP
rs1026035348 361 dbSNP
rs893685967 363 dbSNP
rs1394791691 366 dbSNP
rs1339287303 368 dbSNP
rs1383933741 369 dbSNP
rs1434851334 370 dbSNP
rs1053719358 372 dbSNP
rs80303266 376 dbSNP
rs1319428871 384 dbSNP
rs1255475893 385 dbSNP
rs1292619020 387 dbSNP
rs902334261 390 dbSNP
rs1247398074 400 dbSNP
rs144944567 420 dbSNP
rs568985601 424 dbSNP
rs1312446446 425 dbSNP
rs751230921 427 dbSNP
rs944783206 429 dbSNP
rs117022509 430 dbSNP
rs889313198 434 dbSNP
rs1054549249 440 dbSNP
rs1293189130 443 dbSNP
rs1467140325 446 dbSNP
rs1456410879 449 dbSNP
rs1407446840 453 dbSNP
rs1457211135 455 dbSNP
rs936121910 467 dbSNP
rs1364595559 469 dbSNP
rs1166791181 471 dbSNP
rs1300851279 473 dbSNP
rs903281213 475 dbSNP
rs750929315 477 dbSNP
rs1263888201 478 dbSNP
rs765777910 481 dbSNP
rs917226800 482 dbSNP
rs1262261466 486 dbSNP
rs1056409479 488 dbSNP
rs535468538 489 dbSNP
rs4981836 491 dbSNP
rs984630655 492 dbSNP
rs1199465467 494 dbSNP
rs1410667601 495 dbSNP
rs1472543121 497 dbSNP
rs1157604413 505 dbSNP
rs1248021401 508 dbSNP
rs147727655 510 dbSNP
rs1296442726 515 dbSNP
rs919028841 516 dbSNP
rs972196043 524 dbSNP
rs1284513189 528 dbSNP
rs1350017589 533 dbSNP
rs566850684 534 dbSNP
rs1309069766 535 dbSNP
rs528819968 543 dbSNP
rs1317254756 546 dbSNP
rs1317918866 551 dbSNP
rs1220524613 556 dbSNP
rs1019008218 560 dbSNP
rs1011893777 561 dbSNP
rs150006578 562 dbSNP
rs34407926 562 dbSNP
rs1250350935 564 dbSNP
rs1471325535 566 dbSNP
rs1175949832 571 dbSNP
rs1032039945 572 dbSNP
rs1294253081 574 dbSNP
rs1399490750 575 dbSNP
rs953622109 577 dbSNP
rs552739097 586 dbSNP
rs1000320680 591 dbSNP
rs943895021 602 dbSNP
rs374569724 605 dbSNP
rs563457072 606 dbSNP
rs1174910751 613 dbSNP
rs186881188 615 dbSNP
rs1050550643 618 dbSNP
rs1014737375 619 dbSNP
rs895857305 620 dbSNP
rs1487695935 625 dbSNP
rs1246170410 627 dbSNP
rs931957657 630 dbSNP
rs1261590347 631 dbSNP
rs1219492711 632 dbSNP
rs1486377735 636 dbSNP
rs1056193534 640 dbSNP
rs973401850 649 dbSNP
rs940946484 651 dbSNP
rs937326299 653 dbSNP
rs1481244762 654 dbSNP
rs551939832 655 dbSNP
rs1164412568 668 dbSNP
rs182555555 675 dbSNP
rs1408468302 679 dbSNP
rs189528788 681 dbSNP
rs970936297 683 dbSNP
rs930477382 684 dbSNP
rs919080695 693 dbSNP
rs971861814 696 dbSNP
rs112799872 697 dbSNP
rs1301989572 702 dbSNP
rs1464363531 703 dbSNP
rs1378966633 704 dbSNP
rs540153684 706 dbSNP
rs867323223 707 dbSNP
rs1209952962 709 dbSNP
rs879642256 709 dbSNP
rs1477195661 713 dbSNP
rs999224923 721 dbSNP
rs1163968750 722 dbSNP
rs1420231318 722 dbSNP
rs552433237 722 dbSNP
rs966996078 722 dbSNP
rs1414006834 724 dbSNP
rs1174119717 730 dbSNP
rs1408179921 734 dbSNP
rs1470286030 740 dbSNP
rs1459636373 744 dbSNP
rs1319638158 745 dbSNP
rs1324529432 754 dbSNP
rs1432385800 758 dbSNP
rs1270418182 769 dbSNP
rs1366242923 772 dbSNP
rs1216996111 773 dbSNP
rs1019531152 774 dbSNP
rs911595885 781 dbSNP
rs1326269299 783 dbSNP
rs1196458783 785 dbSNP
rs1204919776 797 dbSNP
rs573097575 800 dbSNP
rs986208349 802 dbSNP
rs1008454902 807 dbSNP
rs1218162418 808 dbSNP
rs1242936133 815 dbSNP
rs1429686850 818 dbSNP
rs1197324748 820 dbSNP
rs1256086150 823 dbSNP
rs1431627756 825 dbSNP
rs1480715224 826 dbSNP
rs530725699 829 dbSNP
rs953007384 831 dbSNP
rs1033240456 834 dbSNP
rs1000373244 836 dbSNP
rs899296605 844 dbSNP
rs1037630297 846 dbSNP
rs1402765572 848 dbSNP
rs967544080 855 dbSNP
rs183005469 862 dbSNP
rs1224585668 864 dbSNP
rs1288303444 866 dbSNP
rs1348922906 878 dbSNP
rs75443632 880 dbSNP
rs1285441530 881 dbSNP
rs1451248078 914 dbSNP
rs1014376681 936 dbSNP
rs1280244144 944 dbSNP
rs1220612832 945 dbSNP
rs1271071013 950 dbSNP
rs1490536156 958 dbSNP
rs1181314879 959 dbSNP
rs4981091 965 dbSNP
rs1471149624 978 dbSNP
rs916735887 979 dbSNP
rs895898680 981 dbSNP
rs1304584559 986 dbSNP
rs1365614766 989 dbSNP
rs575385791 990 dbSNP
rs1326336605 1005 dbSNP
rs1394022238 1016 dbSNP
rs41508745 1026 dbSNP
rs1280491256 1038 dbSNP
rs888420134 1045 dbSNP
rs547806641 1048 dbSNP
rs1294263477 1050 dbSNP
rs1360198331 1061 dbSNP
rs1336941257 1063 dbSNP
rs1204501530 1073 dbSNP
rs1248564118 1077 dbSNP
rs1439491679 1090 dbSNP
rs1182450840 1095 dbSNP
rs1236611460 1110 dbSNP
rs1464837669 1111 dbSNP
rs1049037176 1115 dbSNP
rs1165030852 1127 dbSNP
rs1397483276 1131 dbSNP
rs930528050 1132 dbSNP
rs977714870 1134 dbSNP
rs897695844 1141 dbSNP
rs749572846 1142 dbSNP
rs1165647337 1143 dbSNP
rs1019921507 1156 dbSNP
rs1393588063 1159 dbSNP
rs1008135556 1160 dbSNP
rs1450945093 1165 dbSNP
rs954124699 1165 dbSNP
rs1475458844 1167 dbSNP
rs1317673876 1169 dbSNP
rs1028112321 1174 dbSNP
rs1227060006 1175 dbSNP
rs1249626723 1176 dbSNP
rs139330258 1192 dbSNP
rs1196261931 1193 dbSNP
rs1186110997 1201 dbSNP
rs1262453714 1206 dbSNP
rs899214921 1208 dbSNP
rs944521075 1212 dbSNP
rs1037767439 1215 dbSNP
rs1005261543 1217 dbSNP
rs886426218 1226 dbSNP
rs1374227582 1232 dbSNP
rs1425893081 1232 dbSNP
rs746010170 1236 dbSNP
rs1168951567 1240 dbSNP
rs985872598 1240 dbSNP
rs1468742221 1243 dbSNP
rs1339104655 1248 dbSNP
rs949658763 1252 dbSNP
rs1248488487 1258 dbSNP
rs1381794093 1260 dbSNP
rs1178244667 1262 dbSNP
rs1328223227 1263 dbSNP
rs931661395 1263 dbSNP
rs925607421 1269 dbSNP
rs1321328680 1273 dbSNP
rs1260244211 1275 dbSNP
rs1205547754 1277 dbSNP
rs1263466377 1278 dbSNP
rs916868332 1284 dbSNP
rs1202962091 1292 dbSNP
rs979023444 1294 dbSNP
rs1263438915 1297 dbSNP
rs568050291 1297 dbSNP
rs780254635 1299 dbSNP
rs552977705 1304 dbSNP
rs925001836 1304 dbSNP
rs1384718061 1314 dbSNP
rs969049497 1316 dbSNP
rs150851644 1334 dbSNP
rs993410550 1335 dbSNP
rs191906201 1340 dbSNP
rs1383053147 1343 dbSNP
rs1302613699 1347 dbSNP
rs960211778 1359 dbSNP
rs552460056 1360 dbSNP
rs953980883 1361 dbSNP
rs1283885690 1364 dbSNP
rs1316068215 1365 dbSNP
rs1236587682 1379 dbSNP
rs1262314996 1385 dbSNP
rs1485990276 1387 dbSNP
rs769898452 1396 dbSNP
rs142557353 1406 dbSNP
rs376694779 1406 dbSNP
rs1266084351 1407 dbSNP
rs1202178871 1408 dbSNP
rs1490704831 1408 dbSNP
rs761181148 1408 dbSNP
rs531031182 1411 dbSNP
rs1419056083 1412 dbSNP
rs973852098 1416 dbSNP
rs565135830 1425 dbSNP
rs569950805 1426 dbSNP
rs1365983620 1435 dbSNP
rs1015408369 1441 dbSNP
rs1363737909 1450 dbSNP
rs1004950013 1452 dbSNP
rs1427174778 1454 dbSNP
rs568601922 1470 dbSNP
rs1386426809 1471 dbSNP
rs1389657701 1479 dbSNP
rs1024966693 1485 dbSNP
rs1244731308 1488 dbSNP
rs1289188105 1501 dbSNP
rs1158351738 1502 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucUCGUUCUGGGGCAGAgauuu 5'
            :|::| |||||||||     
Target 5' auGGUGAAACCCCGUCU----- 3'
24 - 40
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000389961.3 | 3UTR | AGUUUGAGACCAGCCUGACCAACAUGGUGAAACCCCGUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE32688 Pancreatic cancer -0.456 4.4e-3 -0.196 1.4e-1 32 Click to see details
GSE28260 Renal cortex and medulla 0.682 5.1e-3 0.648 8.3e-3 13 Click to see details
GSE26953 Aortic valvular endothelial cells 0.392 2.9e-2 0.389 3.0e-2 24 Click to see details
GSE42095 Differentiated embryonic stem cells 0.376 3.9e-2 0.375 3.9e-2 23 Click to see details
GSE28544 Breast cancer 0.212 1.6e-1 0.436 1.7e-2 24 Click to see details
GSE38226 Liver fibrosis 0.059 4.0e-1 0.353 5.8e-2 21 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.01 4.8e-1 -0.190 1.8e-1 25 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
186 hsa-miR-1303 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT035871 SOAT1 sterol O-acyltransferase 1 1 1
MIRT035872 FHOD3 formin homology 2 domain containing 3 1 1
MIRT035873 RPL7A ribosomal protein L7a 1 1
MIRT035874 NCAPD2 non-SMC condensin I complex subunit D2 1 1
MIRT035875 RPS8 ribosomal protein S8 1 1
MIRT035876 AHNAK AHNAK nucleoprotein 1 1
MIRT035877 ACTB actin beta 1 1
MIRT035878 DEF8 differentially expressed in FDCP 8 homolog 1 1
MIRT035879 MET MET proto-oncogene, receptor tyrosine kinase 1 1
MIRT035880 MED13 mediator complex subunit 13 1 1
MIRT035881 FAT3 FAT atypical cadherin 3 1 1
MIRT035882 HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 1 1
MIRT035883 RPS16 ribosomal protein S16 1 1
MIRT035884 CDK6 cyclin dependent kinase 6 1 1
MIRT035885 GEMIN5 gem nuclear organelle associated protein 5 1 1
MIRT035886 PITRM1 pitrilysin metallopeptidase 1 1 1
MIRT035887 PRRC2A proline rich coiled-coil 2A 1 1
MIRT035888 KIAA0226 RUN and cysteine rich domain containing beclin 1 interacting protein 1 1
MIRT035889 MLLT6 MLLT6, PHD finger containing 1 1
MIRT035890 EIF3I eukaryotic translation initiation factor 3 subunit I 1 1
MIRT035891 FASN fatty acid synthase 1 1
MIRT035892 LEPREL4 prolyl 3-hydroxylase family member 4 (non-enzymatic) 1 1
MIRT035893 HSCB HscB mitochondrial iron-sulfur cluster cochaperone 1 1
MIRT035894 PSME4 proteasome activator subunit 4 1 1
MIRT035895 FRS2 fibroblast growth factor receptor substrate 2 1 1
MIRT035896 ZNF264 zinc finger protein 264 1 1
MIRT035897 HYLS1 HYLS1, centriolar and ciliogenesis associated 1 1
MIRT035898 USP54 ubiquitin specific peptidase 54 1 1
MIRT035899 L1TD1 LINE1 type transposase domain containing 1 1 1
MIRT035900 OR51E2 olfactory receptor family 51 subfamily E member 2 1 1
MIRT053762 CLDN18 claudin 18 3 1
MIRT060730 RPS3 ribosomal protein S3 2 2
MIRT083986 RAB22A RAB22A, member RAS oncogene family 2 2
MIRT098550 TBPL1 TATA-box binding protein like 1 2 6
MIRT134983 TWF1 twinfilin actin binding protein 1 2 4
MIRT136956 FNDC3A fibronectin type III domain containing 3A 2 2
MIRT222065 PURB purine rich element binding protein B 2 2
MIRT239574 UBN2 ubinuclein 2 2 4
MIRT261820 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT264698 C11ORF57 chromosome 11 open reading frame 57 2 4
MIRT308476 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT377481 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT442304 NEU3 neuraminidase 3 2 2
MIRT446083 SLC30A10 solute carrier family 30 member 10 2 2
MIRT449606 PRPF4 pre-mRNA processing factor 4 2 2
MIRT453767 NUCB1 nucleobindin 1 2 10
MIRT455603 SRSF3 serine and arginine rich splicing factor 3 2 2
MIRT455913 KIF2C kinesin family member 2C 2 2
MIRT460091 ZYG11B zyg-11 family member B, cell cycle regulator 2 4
MIRT460866 UBE2S ubiquitin conjugating enzyme E2 S 2 2
MIRT461339 NUP133 nucleoporin 133 2 2
MIRT463769 YOD1 YOD1 deubiquitinase 2 2
MIRT466368 THAP1 THAP domain containing 1 2 4
MIRT467168 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT468703 SDHD succinate dehydrogenase complex subunit D 2 2
MIRT469122 RNF126 ring finger protein 126 2 2
MIRT472426 NCBP2 nuclear cap binding protein subunit 2 2 4
MIRT479420 CDKN1B cyclin dependent kinase inhibitor 1B 2 8
MIRT484260 FAM177A1 family with sequence similarity 177 member A1 2 2
MIRT485468 IL6ST interleukin 6 signal transducer 2 10
MIRT490237 H2AFZ H2A histone family member Z 2 6
MIRT491002 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT492127 SUMO2 small ubiquitin-like modifier 2 2 2
MIRT499169 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT499825 PCSK9 proprotein convertase subtilisin/kexin type 9 2 8
MIRT501794 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT503441 GINS4 GINS complex subunit 4 2 4
MIRT503688 MAVS mitochondrial antiviral signaling protein 2 5
MIRT506926 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT511430 HOXA10 homeobox A10 2 6
MIRT512415 LAYN layilin 2 4
MIRT513791 NIPAL3 NIPA like domain containing 3 2 4
MIRT516163 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1 2 4
MIRT516513 PARK2 parkin RBR E3 ubiquitin protein ligase 2 2
MIRT516915 HINFP histone H4 transcription factor 2 2
MIRT517102 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT517350 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT518019 ABHD15 abhydrolase domain containing 15 2 2
MIRT520945 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT525250 RNF213 ring finger protein 213 2 2
MIRT530634 PPIC peptidylprolyl isomerase C 2 4
MIRT530671 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT531563 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT538205 CYR61 cysteine rich angiogenic inducer 61 2 2
MIRT538419 COLEC10 collectin subfamily member 10 2 2
MIRT541964 ZNF485 zinc finger protein 485 2 2
MIRT543088 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT543257 ZNF662 zinc finger protein 662 2 2
MIRT543589 KIAA1549 KIAA1549 2 2
MIRT543955 RNF20 ring finger protein 20 2 2
MIRT544043 C9orf64 chromosome 9 open reading frame 64 2 4
MIRT548064 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548240 FBXW7 F-box and WD repeat domain containing 7 2 2
MIRT548442 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT548623 DAZAP1 DAZ associated protein 1 2 4
MIRT548770 COLEC12 collectin subfamily member 12 2 2
MIRT549506 HDDC2 HD domain containing 2 2 4
MIRT551924 AKAP8 A-kinase anchoring protein 8 2 4
MIRT555656 PGRMC1 progesterone receptor membrane component 1 2 2
MIRT556286 MAP3K5 mitogen-activated protein kinase kinase kinase 5 2 2
MIRT557012 HOXD13 homeobox D13 2 4
MIRT563907 CLSPN claspin 2 2
MIRT565527 SON SON DNA binding protein 2 2
MIRT568000 COMMD2 COMM domain containing 2 2 2
MIRT569831 PLA2G16 phospholipase A2 group XVI 2 4
MIRT573905 PARP1 poly(ADP-ribose) polymerase 1 2 2
MIRT616589 KLHL9 kelch like family member 9 2 2
MIRT617137 ZNF556 zinc finger protein 556 2 2
MIRT617400 API5 apoptosis inhibitor 5 2 2
MIRT617455 CCS copper chaperone for superoxide dismutase 2 2
MIRT617799 ZNF793 zinc finger protein 793 2 2
MIRT618190 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT618303 GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 2 2
MIRT618329 ZNF813 zinc finger protein 813 2 2
MIRT618820 PHF20 PHD finger protein 20 2 2
MIRT619153 PPDPF pancreatic progenitor cell differentiation and proliferation factor 2 2
MIRT619530 ZNF708 zinc finger protein 708 2 2
MIRT619849 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT620806 SLC26A2 solute carrier family 26 member 2 2 2
MIRT621312 YIPF4 Yip1 domain family member 4 2 2
MIRT621358 GUCA1B guanylate cyclase activator 1B 2 2
MIRT621366 ART4 ADP-ribosyltransferase 4 (Dombrock blood group) 2 2
MIRT621547 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT621883 TAOK1 TAO kinase 1 2 2
MIRT622451 RNF19B ring finger protein 19B 2 2
MIRT623404 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT623587 IPO9 importin 9 2 2
MIRT623974 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT624086 DPP8 dipeptidyl peptidase 8 2 2
MIRT624108 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT632486 RNF8 ring finger protein 8 2 2
MIRT634057 PLIN3 perilipin 3 2 2
MIRT634657 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT640682 MCUR1 mitochondrial calcium uniporter regulator 1 2 2
MIRT641242 CENPN centromere protein N 2 2
MIRT642260 ZNF677 zinc finger protein 677 2 2
MIRT642954 RELA RELA proto-oncogene, NF-kB subunit 2 2
MIRT644326 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT644632 ICA1L islet cell autoantigen 1 like 2 2
MIRT645721 POLR3A RNA polymerase III subunit A 2 2
MIRT647850 LYPLA1 lysophospholipase I 2 2
MIRT649281 NEK8 NIMA related kinase 8 2 2
MIRT650038 VHL von Hippel-Lindau tumor suppressor 2 2
MIRT650354 RRP36 ribosomal RNA processing 36 2 2
MIRT651144 ZNF384 zinc finger protein 384 2 2
MIRT651778 UTP6 UTP6, small subunit processome component 2 2
MIRT652576 TLCD2 TLC domain containing 2 2 2
MIRT654621 PTPRJ protein tyrosine phosphatase, receptor type J 2 2
MIRT656023 MYO5A myosin VA 2 2
MIRT656105 MSRB3 methionine sulfoxide reductase B3 2 2
MIRT657749 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT657924 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT658848 DUSP19 dual specificity phosphatase 19 2 2
MIRT659100 DENND6A DENN domain containing 6A 2 2
MIRT659153 DCX doublecortin 2 2
MIRT660870 ADRBK2 G protein-coupled receptor kinase 3 2 2
MIRT661941 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT663577 C10orf32 BLOC-1 related complex subunit 7 2 2
MIRT664625 WDPCP WD repeat containing planar cell polarity effector 2 4
MIRT666562 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT669992 GPR156 G protein-coupled receptor 156 2 4
MIRT670445 RSBN1L round spermatid basic protein 1 like 2 2
MIRT670853 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT671942 SPPL3 signal peptide peptidase like 3 2 2
MIRT674269 LMOD3 leiomodin 3 2 2
MIRT674424 MIOX myo-inositol oxygenase 2 4
MIRT674982 ATP5G1 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) 2 2
MIRT675038 BACE2 beta-site APP-cleaving enzyme 2 2 4
MIRT675309 C2orf68 chromosome 2 open reading frame 68 2 2
MIRT675641 TTPAL alpha tocopherol transfer protein like 2 2
MIRT688688 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT689369 ZNF101 zinc finger protein 101 2 2
MIRT689605 AKAP6 A-kinase anchoring protein 6 2 2
MIRT691715 LARS leucyl-tRNA synthetase 2 2
MIRT695473 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT695530 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 2
MIRT695878 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT696586 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT703007 HEATR5A HEAT repeat containing 5A 2 2
MIRT707942 PHKA1 phosphorylase kinase regulatory subunit alpha 1 2 2
MIRT709765 GPR183 G protein-coupled receptor 183 2 2
MIRT710332 ZNF669 zinc finger protein 669 2 2
MIRT713249 ZFP30 ZFP30 zinc finger protein 2 2
MIRT716613 RBM18 RNA binding motif protein 18 2 2
MIRT733414 BAG2 BCL2 associated athanogene 2 2 0
MIRT756135 THSD7A thrombospondin type 1 domain containing 7A 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (RKO)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (HT-29)
hsa-miR-1303 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-1303 Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-1303 Rituximab sensitive High Diffuse Large B-Cell Lymphoma cell line (DB, NU-DHL-1, NU-DUL-1, MC-116, SU-DHL-4, SU-DHL-5, FARAGE, HBL-1, OCI-Ly3, OCI-Ly7, OCI-Ly8, OCI-Ly19, RIVA, SU-DHL-8, U2932)
hsa-miR-1303 Etoposide 36462 NSC141540 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vinorelbine 44424639 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vincristine 5978 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-mir-1303 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (W1)
hsa-mir-1303 Topotecan 60699 NSC609699 approved resistant cell line (W1)
hsa-mir-1303 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-1303 Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-1303 Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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