pre-miRNA Information
pre-miRNA hsa-mir-655   
Genomic Coordinates chr14: 101049550 - 101049646
Synonyms MIRN655, hsa-mir-655, MIR655
Description Homo sapiens miR-655 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-655-5p
Sequence 23| AGAGGUUAUCCGUGUUAUGUUC |44
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs766575622 4 dbSNP
rs754023562 5 dbSNP
rs757713353 10 dbSNP
rs369862924 11 dbSNP
rs552601004 12 dbSNP
rs753191773 14 dbSNP
rs569206109 15 dbSNP
rs373094888 18 dbSNP
rs778280798 22 dbSNP
Putative Targets

Gene Information
Gene Symbol GOLGA1   
Synonyms golgin-97
Description golgin A1
Transcript NM_002077   
Expression
Putative miRNA Targets on GOLGA1
3'UTR of GOLGA1
(miRNA target sites are highlighted)
>GOLGA1|NM_002077|3'UTR
   1 AGGGGACTACCCAAGGATGGAGCTCCGTGGGTTGACACTTTTTCTGTGAAAAGAACACTGACACACCAGTCTGGGTGGGT
  81 TTTTAATCACTGTAACTGCAGTATTTTGTACAAGTGTCTAAACATTGTTTACAAGACTAAGGCCCACTTCCCTGCAGGCT
 161 GACCTGAACCTCAGGGGGTAGCTGATCCTGTCATTCTGGTCACCAAACAGGAGGGTCCTGGCACTACCCAGATTTCCACA
 241 GTGCTGCTAATATCCCAGCTCCAGCCAGCACCCCATCTGCACCTGAATCCTCTAACTTCACGGTAGCACTTACAGCTGAA
 321 GCCATCAGCATCTGGCAGGCACACCTGAGTCACCATGTAGCGCTGCTACTGGAGGTAGAGACGGCCCTTTGAGATGGTGC
 401 CCAGCAGGCCAAACCCACCTGCCTCTGCCAGGAACAGCCAACTCCATGGGAACTCTATGGGAGTGGCTTTTAAAAATTCA
 481 GATGAGTTAGAAGCTTTTTATCCCTTCCTCTCAAGAAAATATTCTTTCACCCTGTCTCTCAAACCACCTAGAACTTTAGA
 561 GGATCCATCTTTAAGGGCCGGTGTGGATGAATGAGAAAATGCACCTTTCTGACAGTATCTCCACTTTACTTAAGAAAACT
 641 AGCAAATATATGAAAAGACCCTTAGTACCAAATACACTCAATTGCCTTTTTAATGAATGTACTTGTCTTGGATAGGTTGC
 721 TGGTAAACCATTTTAAACTATTTTTTATAGCTGAAGTTCTTCACTACTATAAACATGTCTTCTGTACTATAAAATCCATT
 801 TAACTGGTGTTCTTAAAATCAGAGCGTCCAGAGGAAATTCTTCCTAAAACTAGGATTCCTGTTCCTTTGTCTTCTCACTC
 881 GCACTCTGGCACTGCTCCCTCTGAAGTGCAGTGGGATCTCGTGTGCTTTGTCTTGATTCTGTGCTGCGCTGCCGCTGGGC
 961 GATGCAGACCACCTGTCTTCTACTGAAGGACAGTCCGCTGTCTCCAGTGGGGGCAGCAGCTGTCCCCCAGCCTCGATGGA
1041 GACACTGGGGCAGTCTGCCTTGTCTGTGGAGCTGCTCTCTCTCCCTCATCCCACCCCAAATACTTAAAATGACACTACAC
1121 CCAGACGGCGCCCAGCTGGCTGCAGCACTTGTAGCATGCACATGACTCTGGTAGTAACCAACAAAAACTTGTTTTATGGA
1201 TTCCTCGTTTACTGAGGAAAGGGAACATGCTGGTTCTGGAAAAGCCACAATATTGAATCTAAAAGGAAACCGTTTATTGT
1281 TTGATGAAAGTTTCACTGGTTAAATAAAAAACTAAATTAATAACTGGAGCCTCTAAATTTATTATCCATTATCCAGTGAT
1361 GGAAAGTTGTATTTCTCAATCATGCTTAGGGCCAAAATAGGTATATAAAATGTGTCACAGAAAAACACGCATTTGCAACG
1441 TTAACCTAACGAAATTTCCATGAAGAACCAAGTCAGGGCAGCATCTCCTTAGTCCCAGCTCAGGCTCTCTGCCTTCCAGA
1521 GGCCGCTTCTCCAGTGACTAACCTCCTCCTCTGGCTCCTCCTTGCAGACAGTTATCCCTTGTTTAGAACACGAATTTCCA
1601 TTTACCTGGTGGGAACACGAAACAGGAGTCTCTTCTGTTCTGCAAGTTTGATGGGTAAGAGGTAGCCTTTTTTCAAAGTA
1681 GGATTTCCTTTTTCAACTGTTCCAGGAAAGAATCTCTAAGACTGGGTAGCTCACAGCCAGCCAAAGGCAGCTACATTTCC
1761 ACAGAAGCCCGTCCGCTGCCTCCGTGGCTTCTCCAGCCATTGAACTGGTCCCACACGCACCCCAGGCCCCACTCCTCGGC
1841 AGTTTCAGGTGTAGCTGTGGGGCCCGTTCCTAGGTCTGTACTCACTTTAGGGAGGCTTCACTGACTAGGCTTTCCTCCTG
1921 CATGTTGAATTTCCTTCAGCTTTAAGAGGAAGAGTGGAATAAATATTCTAAGTGATTTAATGCACTTTGACTTGTATAAA
2001 ACTTTCTGTGTTAGCGACGGTATCTATAGCCCTTTATACGAGCGATGGATCTTGAGCTCTCCTTCCATGTTGTAAATAGG
2081 GATTGTATTCTTGAAAACTGCTGTAGCAAATTCATCTGTGGTGCAATACACTTTTTGATTAAAGCTCTTCAATCCAGATG
2161 CAACTACAATGGATTTTACTAGTTTGGTGTGTCAGTATTTCTTTGACTCATTAAATCTGGTATTTTGTGTCTCATAAAAA
2241 AAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cuuguauuGUGCCU-AUUGGAGa 5'
                  ||  || ||||||| 
Target 5' cgcttctcCAGTGACTAACCTCc 3'
1524 - 1546 146.00 -8.80
2
miRNA  3' cuUGU-AUUGUGCCUAUUGGAga 5'
            :|| | :||  | ||||||  
Target 5' acGCATTTGCAACGTTAACCTaa 3'
1427 - 1449 132.00 -10.00
3
miRNA  3' cuUGUAUUGUGCCUAUUGGAGa 5'
            || |:|  |   ||||:|| 
Target 5' gcACCTGAATCCTCTAACTTCa 3'
279 - 300 132.00 -8.44
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31559790 16 COSMIC
COSN30507893 30 COSMIC
COSN30748161 80 COSMIC
COSN31601935 85 COSMIC
COSN28860635 112 COSMIC
COSN5860362 223 COSMIC
COSN28183663 225 COSMIC
COSN25080249 301 COSMIC
COSN16128517 391 COSMIC
COSN27607072 417 COSMIC
COSN5697612 543 COSMIC
COSN26223217 597 COSMIC
COSN22840078 659 COSMIC
COSN9699954 693 COSMIC
COSN31555856 728 COSMIC
COSN20106575 775 COSMIC
COSN29546512 840 COSMIC
COSN17183113 853 COSMIC
COSN20092013 961 COSMIC
COSN19507254 1129 COSMIC
COSN35204 1171 COSMIC
COSN15675962 1556 COSMIC
COSN29479682 1674 COSMIC
COSN29478318 1683 COSMIC
COSN7556432 1866 COSMIC
COSN19331004 1878 COSMIC
COSN30538216 1937 COSMIC
COSN31566667 1977 COSMIC
COSN31572118 2016 COSMIC
COSN31486403 2048 COSMIC
COSN31584858 2090 COSMIC
COSN16131383 2093 COSMIC
COSN31517643 2112 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1163904953 8 dbSNP
rs1043852032 10 dbSNP
rs1459691584 14 dbSNP
rs143156667 20 dbSNP
rs766601647 26 dbSNP
rs762675477 27 dbSNP
rs1248588656 28 dbSNP
rs750312237 30 dbSNP
rs1445182942 38 dbSNP
rs776534287 39 dbSNP
rs765090967 40 dbSNP
rs776836468 41 dbSNP
rs1349623170 42 dbSNP
rs765921387 44 dbSNP
rs371031789 45 dbSNP
rs368938555 59 dbSNP
rs928439409 67 dbSNP
rs1467134693 68 dbSNP
rs774303647 69 dbSNP
rs981585423 72 dbSNP
rs746936631 74 dbSNP
rs1212507051 77 dbSNP
rs1238303147 78 dbSNP
rs918441082 91 dbSNP
rs1439158956 92 dbSNP
rs1179172899 98 dbSNP
rs1362883659 101 dbSNP
rs1281753729 102 dbSNP
rs1473293972 103 dbSNP
rs1167637970 108 dbSNP
rs780324644 114 dbSNP
rs932574148 118 dbSNP
rs919822561 119 dbSNP
rs1206651094 122 dbSNP
rs779903848 123 dbSNP
rs1389769305 131 dbSNP
rs1328374028 134 dbSNP
rs962626150 138 dbSNP
rs1351210838 143 dbSNP
rs1038339248 145 dbSNP
rs1415162498 151 dbSNP
rs1294962190 156 dbSNP
rs1332561053 164 dbSNP
rs1264792621 170 dbSNP
rs1231387276 173 dbSNP
rs1340795918 174 dbSNP
rs1018569371 175 dbSNP
rs1260568000 182 dbSNP
rs939992459 201 dbSNP
rs908669079 204 dbSNP
rs1190492854 213 dbSNP
rs1006929186 227 dbSNP
rs1255896613 230 dbSNP
rs955547894 261 dbSNP
rs188462965 267 dbSNP
rs758330155 271 dbSNP
rs999545967 273 dbSNP
rs1171949859 275 dbSNP
rs533528579 284 dbSNP
rs748377745 294 dbSNP
rs1324884855 301 dbSNP
rs1403163734 302 dbSNP
rs1043883768 305 dbSNP
rs1010991761 313 dbSNP
rs1320597228 314 dbSNP
rs1413962187 316 dbSNP
rs992252834 317 dbSNP
rs756320552 323 dbSNP
rs1224600250 324 dbSNP
rs778658752 335 dbSNP
rs1163331166 354 dbSNP
rs564556627 357 dbSNP
rs1212528516 358 dbSNP
rs544668711 361 dbSNP
rs1485517091 362 dbSNP
rs1194854488 364 dbSNP
rs1264469631 378 dbSNP
rs1427318343 382 dbSNP
rs139838835 383 dbSNP
rs1188008514 395 dbSNP
rs1477238250 396 dbSNP
rs1203212299 399 dbSNP
rs966363842 408 dbSNP
rs928271600 412 dbSNP
rs1171952583 415 dbSNP
rs1049875185 417 dbSNP
rs148608163 420 dbSNP
rs1045402354 423 dbSNP
rs1433866822 426 dbSNP
rs929724823 430 dbSNP
rs1239994534 433 dbSNP
rs1346556176 438 dbSNP
rs575694779 457 dbSNP
rs1380503671 458 dbSNP
rs918306751 461 dbSNP
rs973903490 479 dbSNP
rs1294810269 481 dbSNP
rs962533996 486 dbSNP
rs1008379880 491 dbSNP
rs1300724649 494 dbSNP
rs890851233 494 dbSNP
rs1050045914 504 dbSNP
rs562104865 507 dbSNP
rs1485161139 510 dbSNP
rs1205013687 511 dbSNP
rs1254197715 513 dbSNP
rs985767239 514 dbSNP
rs1191830778 522 dbSNP
rs1394692489 526 dbSNP
rs955423882 534 dbSNP
rs541779507 538 dbSNP
rs1365289478 539 dbSNP
rs569388028 541 dbSNP
rs999449813 545 dbSNP
rs966770662 551 dbSNP
rs908535446 557 dbSNP
rs1395134267 565 dbSNP
rs1442461731 568 dbSNP
rs1336813040 569 dbSNP
rs671483 578 dbSNP
rs1011065097 579 dbSNP
rs552820449 580 dbSNP
rs1308736034 592 dbSNP
rs915958722 593 dbSNP
rs1055405336 600 dbSNP
rs1274277511 604 dbSNP
rs1004222284 606 dbSNP
rs1211874650 611 dbSNP
rs1252497373 616 dbSNP
rs1481020832 627 dbSNP
rs1330835131 631 dbSNP
rs906755548 639 dbSNP
rs184569533 641 dbSNP
rs1045432343 649 dbSNP
rs1418465462 655 dbSNP
rs1462991166 665 dbSNP
rs17327817 673 dbSNP
rs1393042348 676 dbSNP
rs556908484 679 dbSNP
rs1442328166 681 dbSNP
rs1299467650 691 dbSNP
rs1370730077 698 dbSNP
rs781362703 699 dbSNP
rs1170670069 716 dbSNP
rs1337547871 739 dbSNP
rs1408862856 747 dbSNP
rs757416612 748 dbSNP
rs1231955645 757 dbSNP
rs537150285 760 dbSNP
rs1169231422 770 dbSNP
rs1308097705 771 dbSNP
rs867006144 774 dbSNP
rs1206726938 775 dbSNP
rs200402112 776 dbSNP
rs3832632 777 dbSNP
rs776538547 777 dbSNP
rs1480464042 779 dbSNP
rs1252030346 783 dbSNP
rs1191486914 788 dbSNP
rs1021053116 790 dbSNP
rs1058535 794 dbSNP
rs1258010088 795 dbSNP
rs764108917 812 dbSNP
rs1185642532 820 dbSNP
rs1412994781 821 dbSNP
rs1409972970 825 dbSNP
rs1171985626 826 dbSNP
rs1352386537 831 dbSNP
rs941230444 833 dbSNP
rs764095134 835 dbSNP
rs1357703742 840 dbSNP
rs1197941117 843 dbSNP
rs1293148161 845 dbSNP
rs756150755 847 dbSNP
rs955305332 852 dbSNP
rs1028040935 872 dbSNP
rs997119826 880 dbSNP
rs985285939 881 dbSNP
rs568105622 885 dbSNP
rs1016833969 888 dbSNP
rs1185537732 893 dbSNP
rs1236828835 894 dbSNP
rs1475732973 899 dbSNP
rs1215346245 901 dbSNP
rs922506561 903 dbSNP
rs1448373661 908 dbSNP
rs1173812105 913 dbSNP
rs1301586342 916 dbSNP
rs548278307 918 dbSNP
rs887000059 920 dbSNP
rs978104872 921 dbSNP
rs1372271175 925 dbSNP
rs1046146766 928 dbSNP
rs950046414 934 dbSNP
rs752712453 947 dbSNP
rs966676666 953 dbSNP
rs1022365140 954 dbSNP
rs936176990 957 dbSNP
rs989504828 960 dbSNP
rs566266015 961 dbSNP
rs1034277877 963 dbSNP
rs1410089132 967 dbSNP
rs977559383 970 dbSNP
rs1394084047 983 dbSNP
rs1003679912 987 dbSNP
rs1240297348 988 dbSNP
rs946299564 996 dbSNP
rs1396496867 997 dbSNP
rs1452242621 1000 dbSNP
rs906779727 1009 dbSNP
rs1172325203 1010 dbSNP
rs912110492 1011 dbSNP
rs986882304 1013 dbSNP
rs1316779801 1018 dbSNP
rs1441726393 1019 dbSNP
rs1026564416 1024 dbSNP
rs1232759672 1034 dbSNP
rs1455366432 1035 dbSNP
rs1225262863 1044 dbSNP
rs1058540 1045 dbSNP
rs774892335 1048 dbSNP
rs1028532041 1050 dbSNP
rs1466772814 1051 dbSNP
rs1197657642 1071 dbSNP
rs1233110374 1077 dbSNP
rs896809196 1078 dbSNP
rs1157261594 1079 dbSNP
rs547295876 1081 dbSNP
rs76746059 1082 dbSNP
rs1462473047 1083 dbSNP
rs546261540 1084 dbSNP
rs564698556 1084 dbSNP
rs1441974653 1085 dbSNP
rs766805164 1087 dbSNP
rs1337828749 1094 dbSNP
rs1444098246 1100 dbSNP
rs1286283602 1106 dbSNP
rs1328353804 1115 dbSNP
rs1213303940 1118 dbSNP
rs889511011 1121 dbSNP
rs550934450 1126 dbSNP
rs1331948880 1127 dbSNP
rs1309018738 1128 dbSNP
rs1273263398 1129 dbSNP
rs1024217816 1130 dbSNP
rs1439252489 1130 dbSNP
rs933839227 1131 dbSNP
rs141596162 1144 dbSNP
rs1190627619 1151 dbSNP
rs1056313170 1160 dbSNP
rs1280699571 1162 dbSNP
rs796115303 1174 dbSNP
rs1442291590 1179 dbSNP
rs1457467410 1188 dbSNP
rs1374324066 1197 dbSNP
rs977965799 1201 dbSNP
rs1168629161 1202 dbSNP
rs945402498 1206 dbSNP
rs1436220335 1207 dbSNP
rs368052646 1211 dbSNP
rs1307694948 1214 dbSNP
rs1349595428 1219 dbSNP
rs529742503 1221 dbSNP
rs936085169 1221 dbSNP
rs1294976605 1227 dbSNP
rs192201908 1263 dbSNP
rs989468104 1265 dbSNP
rs1417135303 1269 dbSNP
rs1243415067 1271 dbSNP
rs561017065 1272 dbSNP
rs959728658 1279 dbSNP
rs572869236 1288 dbSNP
rs112032556 1299 dbSNP
rs1486165968 1312 dbSNP
rs1213550681 1316 dbSNP
rs970911785 1318 dbSNP
rs1423798035 1321 dbSNP
rs773667460 1322 dbSNP
rs559355842 1329 dbSNP
rs1486141312 1346 dbSNP
rs776293646 1353 dbSNP
rs1260408017 1357 dbSNP
rs1026593732 1359 dbSNP
rs1435096336 1360 dbSNP
rs933676364 1361 dbSNP
rs1319171958 1364 dbSNP
rs1399951684 1369 dbSNP
rs373979427 1378 dbSNP
rs1285483101 1382 dbSNP
rs1395422903 1383 dbSNP
rs1296244842 1395 dbSNP
rs993730006 1404 dbSNP
rs768058667 1416 dbSNP
rs746598358 1420 dbSNP
rs920950680 1428 dbSNP
rs774970227 1429 dbSNP
rs1254673458 1432 dbSNP
rs975023843 1432 dbSNP
rs1483148053 1439 dbSNP
rs545672079 1440 dbSNP
rs1016602006 1442 dbSNP
rs577113945 1450 dbSNP
rs889574021 1451 dbSNP
rs772047986 1452 dbSNP
rs557112995 1455 dbSNP
rs745775288 1460 dbSNP
rs1175249419 1468 dbSNP
rs1375679217 1469 dbSNP
rs900995923 1478 dbSNP
rs1042179644 1481 dbSNP
rs1024664872 1485 dbSNP
rs1014158516 1488 dbSNP
rs187394708 1494 dbSNP
rs778711790 1500 dbSNP
rs759176237 1502 dbSNP
rs1000159124 1506 dbSNP
rs1190124469 1508 dbSNP
rs1311913949 1508 dbSNP
rs904618025 1510 dbSNP
rs867358990 1514 dbSNP
rs1327769224 1518 dbSNP
rs1208161386 1522 dbSNP
rs574579832 1524 dbSNP
rs183460974 1525 dbSNP
rs1054197642 1526 dbSNP
rs1189641556 1539 dbSNP
rs938022974 1540 dbSNP
rs926733693 1542 dbSNP
rs1432383374 1548 dbSNP
rs1159639651 1552 dbSNP
rs531110416 1552 dbSNP
rs1243076068 1557 dbSNP
rs534742350 1560 dbSNP
rs982204643 1563 dbSNP
rs1213570050 1569 dbSNP
rs1158381939 1571 dbSNP
rs1333294657 1572 dbSNP
rs1442484292 1585 dbSNP
rs970906437 1591 dbSNP
rs1366546212 1594 dbSNP
rs565654941 1602 dbSNP
rs919442499 1605 dbSNP
rs1234579859 1611 dbSNP
rs776157544 1613 dbSNP
rs1321869867 1614 dbSNP
rs1349140223 1614 dbSNP
rs972196307 1615 dbSNP
rs770701880 1618 dbSNP
rs1336964020 1619 dbSNP
rs558630214 1620 dbSNP
rs544447816 1622 dbSNP
rs1481110795 1625 dbSNP
rs1016515858 1632 dbSNP
rs1177539366 1635 dbSNP
rs1005667141 1642 dbSNP
rs1384339227 1644 dbSNP
rs1471503155 1650 dbSNP
rs1181295444 1651 dbSNP
rs909674806 1654 dbSNP
rs1406593236 1655 dbSNP
rs1162154551 1660 dbSNP
rs1348914631 1660 dbSNP
rs1289267272 1662 dbSNP
rs748454386 1665 dbSNP
rs749475915 1680 dbSNP
rs1369045640 1686 dbSNP
rs982476295 1695 dbSNP
rs1294442141 1702 dbSNP
rs953727325 1706 dbSNP
rs540127802 1714 dbSNP
rs778122312 1718 dbSNP
rs1312150091 1719 dbSNP
rs1308188395 1720 dbSNP
rs530734854 1724 dbSNP
rs1028515446 1725 dbSNP
rs917103515 1726 dbSNP
rs1204257349 1733 dbSNP
rs1258117698 1737 dbSNP
rs571015597 1741 dbSNP
rs993047330 1743 dbSNP
rs997963834 1751 dbSNP
rs958653002 1752 dbSNP
rs1167093284 1754 dbSNP
rs760169240 1770 dbSNP
rs2781055 1771 dbSNP
rs1042211315 1774 dbSNP
rs1009315179 1775 dbSNP
rs1372588110 1775 dbSNP
rs893763070 1776 dbSNP
rs752871075 1783 dbSNP
rs938038331 1784 dbSNP
rs867814092 1788 dbSNP
rs926623680 1790 dbSNP
rs1377766826 1794 dbSNP
rs1046803481 1796 dbSNP
rs530983991 1800 dbSNP
rs755569441 1805 dbSNP
rs1216410949 1807 dbSNP
rs1295668031 1809 dbSNP
rs1227366353 1816 dbSNP
rs144348004 1817 dbSNP
rs1443958159 1820 dbSNP
rs548263436 1821 dbSNP
rs1051939115 1824 dbSNP
rs144077576 1831 dbSNP
rs1485870195 1831 dbSNP
rs900795160 1831 dbSNP
rs1448544887 1837 dbSNP
rs528592560 1838 dbSNP
rs1037914172 1849 dbSNP
rs559321972 1852 dbSNP
rs941054635 1856 dbSNP
rs565039053 1857 dbSNP
rs545836405 1865 dbSNP
rs532548983 1866 dbSNP
rs1305925145 1872 dbSNP
rs112061540 1876 dbSNP
rs1217268596 1879 dbSNP
rs1468725682 1889 dbSNP
rs1250295388 1894 dbSNP
rs1277823718 1900 dbSNP
rs953735159 1909 dbSNP
rs543713749 1919 dbSNP
rs1224743729 1934 dbSNP
rs1210022900 1939 dbSNP
rs1028002983 1940 dbSNP
rs916948079 1944 dbSNP
rs574529057 1946 dbSNP
rs1464067935 1954 dbSNP
rs752059747 1969 dbSNP
rs1233281402 1972 dbSNP
rs1368518891 1979 dbSNP
rs992683537 1980 dbSNP
rs1327765900 1995 dbSNP
rs958778126 2005 dbSNP
rs1441573971 2006 dbSNP
rs1395809043 2008 dbSNP
rs1387935555 2009 dbSNP
rs1296492546 2012 dbSNP
rs997774385 2015 dbSNP
rs965103383 2016 dbSNP
rs1274069269 2018 dbSNP
rs1373827879 2019 dbSNP
rs1020657921 2021 dbSNP
rs1355323874 2025 dbSNP
rs149575615 2027 dbSNP
rs1327794145 2029 dbSNP
rs968736323 2032 dbSNP
rs191133642 2039 dbSNP
rs766867578 2040 dbSNP
rs1058555 2043 dbSNP
rs750752473 2044 dbSNP
rs574766493 2049 dbSNP
rs77474434 2055 dbSNP
rs1030822243 2059 dbSNP
rs1475574011 2063 dbSNP
rs1419039174 2066 dbSNP
rs1388810878 2067 dbSNP
rs1404946474 2068 dbSNP
rs996398361 2079 dbSNP
rs1193551639 2085 dbSNP
rs538208960 2086 dbSNP
rs1481364869 2099 dbSNP
rs1370879000 2100 dbSNP
rs1411437614 2103 dbSNP
rs1286378084 2104 dbSNP
rs769124310 2121 dbSNP
rs1349861142 2123 dbSNP
rs569653774 2123 dbSNP
rs1285485029 2124 dbSNP
rs949324933 2124 dbSNP
rs897948467 2126 dbSNP
rs1016498690 2129 dbSNP
rs1036437250 2135 dbSNP
rs1484202599 2140 dbSNP
rs942201627 2145 dbSNP
rs557337854 2150 dbSNP
rs1345407680 2169 dbSNP
rs1203534944 2181 dbSNP
rs909401941 2185 dbSNP
rs1475843617 2193 dbSNP
rs886669592 2193 dbSNP
rs117916599 2195 dbSNP
rs1190261988 2197 dbSNP
rs1305393909 2197 dbSNP
rs1046730302 2199 dbSNP
rs1472518552 2199 dbSNP
rs929598585 2204 dbSNP
rs779253872 2205 dbSNP
rs1369834963 2207 dbSNP
rs1396491012 2208 dbSNP
rs1336112915 2210 dbSNP
rs138401811 2218 dbSNP
rs1338130557 2227 dbSNP
rs986676479 2228 dbSNP
rs548421524 2229 dbSNP
rs1393210214 2230 dbSNP
rs1343930006 2244 dbSNP
rs1274318546 2246 dbSNP
rs937183353 2247 dbSNP
rs1202643242 2248 dbSNP
rs1312442786 2249 dbSNP
rs1254694006 2252 dbSNP
rs1433120043 2255 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cuuguauugugccuaUUGGAGa 5'
                         |||||| 
Target 5' ----------accugAACCUCa 3'
1 - 12
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000373555.4 | 3UTR | ACCUGAACCUCAGGGGGUAGCUGAUCCUGUCAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
91 hsa-miR-655-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT080691 KIAA1468 KIAA1468 2 2
MIRT095086 SEC24A SEC24 homolog A, COPII coat complex component 2 4
MIRT122450 SMIM13 small integral membrane protein 13 2 2
MIRT214635 SMAD5 SMAD family member 5 2 4
MIRT268267 CCND1 cyclin D1 2 2
MIRT312418 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT329008 DSTN destrin, actin depolymerizing factor 2 2
MIRT329824 PDCD4 programmed cell death 4 2 4
MIRT389635 LRRC58 leucine rich repeat containing 58 2 6
MIRT443969 FAM198B family with sequence similarity 198 member B 2 2
MIRT444080 C12orf73 chromosome 12 open reading frame 73 2 2
MIRT444886 TMEM196 transmembrane protein 196 2 2
MIRT445506 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 4
MIRT446292 ACSL3 acyl-CoA synthetase long chain family member 3 2 2
MIRT446462 THAP1 THAP domain containing 1 2 2
MIRT446472 THUMPD3 THUMP domain containing 3 2 2
MIRT447413 MED21 mediator complex subunit 21 2 2
MIRT447491 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT448965 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT449602 INIP INTS3 and NABP interacting protein 2 2
MIRT449607 PRPF4 pre-mRNA processing factor 4 2 2
MIRT449737 TAB2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 2 2
MIRT451668 KRT8 keratin 8 2 4
MIRT452424 QDPR quinoid dihydropteridine reductase 2 2
MIRT455187 AGTRAP angiotensin II receptor associated protein 2 2
MIRT456059 SLC25A28 solute carrier family 25 member 28 2 2
MIRT456488 SERAC1 serine active site containing 1 2 2
MIRT456631 ARMCX6 armadillo repeat containing, X-linked 6 2 2
MIRT459621 SLC25A33 solute carrier family 25 member 33 2 2
MIRT461162 SLC11A2 solute carrier family 11 member 2 2 4
MIRT461990 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT463149 ZNF385A zinc finger protein 385A 2 4
MIRT463465 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT463801 XPOT exportin for tRNA 2 2
MIRT464010 WDR26 WD repeat domain 26 2 2
MIRT465302 TRIB1 tribbles pseudokinase 1 2 2
MIRT468837 RRM2 ribonucleotide reductase regulatory subunit M2 2 2
MIRT469132 RNF126 ring finger protein 126 2 2
MIRT469244 RHOB ras homolog family member B 2 2
MIRT472414 NCKAP1 NCK associated protein 1 2 2
MIRT472432 NCBP2 nuclear cap binding protein subunit 2 2 2
MIRT472808 MTMR12 myotubularin related protein 12 2 2
MIRT477893 DVL3 dishevelled segment polarity protein 3 2 4
MIRT477963 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT479258 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT479718 CCNF cyclin F 2 2
MIRT480231 C9orf41 carnosine N-methyltransferase 1 2 2
MIRT482600 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483096 TFPI tissue factor pathway inhibitor 2 2
MIRT484644 TBC1D5 TBC1 domain family member 5 2 4
MIRT488899 CLDND1 claudin domain containing 1 2 2
MIRT491954 VPS52 VPS52, GARP complex subunit 2 2
MIRT496937 LBR lamin B receptor 2 2
MIRT498546 TMEM30B transmembrane protein 30B 2 2
MIRT501778 NRBF2 nuclear receptor binding factor 2 2 6
MIRT516286 DBT dihydrolipoamide branched chain transacylase E2 2 2
MIRT516351 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT516751 ZNF100 zinc finger protein 100 2 2
MIRT517939 ZNF431 zinc finger protein 431 2 4
MIRT518295 ZNF514 zinc finger protein 514 2 4
MIRT518515 CASP10 caspase 10 2 2
MIRT519017 NOA1 nitric oxide associated 1 2 2
MIRT519171 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT519470 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT521029 SLC30A5 solute carrier family 30 member 5 2 2
MIRT521251 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT521682 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT529386 SKP1 S-phase kinase associated protein 1 2 2
MIRT545507 NAP1L1 nucleosome assembly protein 1 like 1 2 2
MIRT549655 RSL1D1 ribosomal L1 domain containing 1 2 2
MIRT551041 CTSB cathepsin B 2 4
MIRT551441 ZNF490 zinc finger protein 490 2 4
MIRT554778 RHEBP1 RHEB pseudogene 1 2 4
MIRT565793 SEC14L5 SEC14 like lipid binding 5 2 2
MIRT566727 MSL2 MSL complex subunit 2 2 2
MIRT574668 HNRNPDL heterogeneous nuclear ribonucleoprotein D like 2 2
MIRT610128 DENND5B DENN domain containing 5B 2 2
MIRT624919 FBXW2 F-box and WD repeat domain containing 2 2 2
MIRT641830 TRIM71 tripartite motif containing 71 2 2
MIRT662165 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT667150 NRXN3 neurexin 3 2 2
MIRT689085 ADNP2 ADNP homeobox 2 2 2
MIRT696322 DCAF15 DDB1 and CUL4 associated factor 15 2 2
MIRT699062 SNX4 sorting nexin 4 2 2
MIRT703229 GOLGA1 golgin A1 2 2
MIRT705743 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT706087 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 2
MIRT709288 MAPK8IP2 mitogen-activated protein kinase 8 interacting protein 2 2 2
MIRT711457 RNF145 ring finger protein 145 2 2
MIRT714708 PPP3CC protein phosphatase 3 catalytic subunit gamma 2 2
MIRT719871 CYP4F11 cytochrome P450 family 4 subfamily F member 11 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-655 Gefitinib approved 123631 Quantitative real-time PCR lung adenocarcinoma cells 24258346 2014 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-655 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-655 Androstenedione 6128 NSC9563 resistant cell line (MCF-7)
hsa-mir-655 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-655-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-655-5p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-655-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-655-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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