pre-miRNA Information
pre-miRNA hsa-mir-548t   
Genomic Coordinates chr4: 173268160 - 173268233
Description Homo sapiens miR-548t stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548t-3p
Sequence 46| AAAAACCACAAUUACUUUUGCACCA |70
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 4 + 173268206 29233923 MiREDiBase
A-to-I 3 4 + 173268207 29233923 MiREDiBase
A-to-I 4 4 + 173268208 29233923 MiREDiBase
A-to-I 10 4 + 173268214 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs73872515 5 dbSNP
rs1426966747 6 dbSNP
rs1158401109 21 dbSNP
rs943938928 24 dbSNP
Putative Targets

Gene Information
Gene Symbol GID4   
Synonyms C17orf39, VID24
Description GID complex subunit 4 homolog
Transcript NM_024052   
Expression
Putative miRNA Targets on GID4
3'UTR of GID4
(miRNA target sites are highlighted)
>GID4|NM_024052|3'UTR
   1 CAACGGTTCAGAACAGCAACCAAATAAAACTGAACTTGGCAAAAAAGAACTTTGCCGAGAAAATTGTGTACCTGCCAGAA
  81 CCAGGAGAAGTGTGTTCCTGTTTCTTCACGAGCAGACTCGCATCACAAAGCATGAATGTTAACCCACAGAATCCAAGGAG
 161 CATGGCTGGCCCGTGGGGCAGGTGGAGGGAGCAGTCTTCGTTCTTCCTCCCCTCAGTGGCAGTTTGGTCTTCACCTGTTT
 241 TTAAGCTACCTTAAACGCACTTTTCCTTCCTGCACAGCTAACTTCTACATCACTGAAATGCCCATTCCTTCCTCCGTCCC
 321 ACCTCCAGCCGAATAGAAGGTCTGCTCCCGGATCACCCTCAGCCTTGGTGCTCAGTGGTCCCGAGGCCCTAGACCCCCAC
 401 CCCCCGCCAGTTGCTTTGTCTGGTAGCTCAAGAGAAGGCAGAGCCCCAGCACCTCTGTGCCCCCCAGAGCTCTGTGCAGG
 481 GAGTTGGCCAGCTGCCGCATCATCGGCCACCAAGGGCACAAGAGGCGGAGGCTCCAGTCCCTGCTGGGCTGCCTCAGTCT
 561 TCAGTGCTGATTGTGTCACGGGTCAGCGTGCGCTGCTGAGCCCTGTACTGTTAACAGTGCAAAGCTAGTGAGTAGCTGTC
 641 AGGTTCCCTGGGCCTGCCATCAGGGATCACTAAATTTAAGGCTTCCAGATCCCTGGCAGGAACAGATTCCAGTCCTGCTT
 721 ACTCAGTACATTTGCTCCAAACTTTTCAACTTGAGGGCAATACTAAACTTAAAAATAAGAGTTTTTTTATTACAAAATTA
 801 TTTTTATGGTCCCTTTAACGAGGACCCTATGGCAAATGCACAATTATTCAGAATTACATTTTATCGTTTTCACATTGAAA
 881 ACAGCAAATGTTGACTTAGTAATTTTTATATCGATATCTATATGTATATGTATATTTAATCAACCAGCAGTTTTGAAACT
 961 AGTCATCCTGGTACAAAAGTTTTGCAGCATTGCCTAAATTATAGTGCTCAACACAAGAACTGTTTTTGGGGCCAGTTTAG
1041 CATTTGTGCCGCCTCCTTTTGCTACTCAAAACAGCAATGCTTGGCGGCAGCCTTCCATGAGGCAGAAGGGGTCGTCGTTC
1121 TCTGAAAACAGTGACTCTGAAATGTTGGGACAGGGGAAGGGGTGGGAAACATGAACATGCTCAAATAACTCGAGGCTCAC
1201 GTGCCAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGATGTTTTGTTTTTTTAAATGTTTTAAAAGCTTAAT
1281 AGGTTGGCATCAGTTGTAGCCCACAAACATGGCTAGGGCTTTGGGGATTTGGCATTTTTCTGGTGGTTTACAAGACTTAC
1361 TCCGAATACAAGAGGAAAAGCTTTAAAAACAAGATTGCATCATAACCCCCAGGAGCAAAGCAACCTGGAGGCTGCATATC
1441 CATGGGCGGGCAGCATAAGAGAATGTGAAGCCCTTCAGTGAGACGAGACGAGCAATGGGAAACCTTTTCTGTTCTTAAGA
1521 AGTGACTTTAATTTTATTGACATATGTACTGTATGTTACTGAGATTGAATGTTAGGGGAAGCCTTAAGGTAGAGGTATTT
1601 GGGAAAGTAGCCAGTGGGCACTTGTGATATCTAAAATCTGTTATCCCAGGACTGTGTACAGAGGGGCAACCTACCCATTC
1681 AGGAAGGTCAGGGCTTTGGAACCCTAAAAAGTTGGCCCGATGACTTAAAGGGAAAAATAATTCATTCCCAGAGATGAGTC
1761 AGAACAGTCTCCTCAATCCTGAAATTCAACAAGGCATCAGAAGGGCTGGCTGTGGTCAAGCCCAGCTGCTGTCATGTGAG
1841 GAGATGCTCACTGTGGTCTTGTTGAGCTGATGGCCTTGGTTGAGCTGATGGACAAGTGAAGGAGGCCATGGGGCTGTGCT
1921 GTCCTTCCTGCCGTACGTGCCATTCCACTCTCTTCAGCTCTCCCCTCAACAGCATGCGAGCCCATACCTTCTGCATTTTT
2001 CCAGGCCTGTGAGGGATATAGGCCTCCCCTTGGAGCACTGAGTCCGGAGGTCATCCCTGAGCTCATCCACGGCTCATGCT
2081 GTGGCTCCGAGTAGTGGTTTGAGTGGGCAGGAAGGGCCATTTGCAAACACTGCTGTGTTCTAGACAAACAACCCAAGTCC
2161 TATGGCAGGATTTCTTCCTTCCTTCCTTTTTTACCCAGGTGATGAAGTGCACCCATTGTACTGGGAAGAATGAAGAGGTG
2241 ATACCTTTACTAGATCCTTCAGACACATCTATGAGAAGATTTGTTCATTTAAAAGTCTGCCCACTGAGGATAGGGAAAGG
2321 ATTAAGGATTTTTCCACCTCCTCTTAGTAACTCCTGAATTACCAACATCAACTTCTTTCTCTCCGTTCCTGAAGGAACTT
2401 TGGGGAATCATCTTCATCCGTAGTTACGCTTTCCTGAACCTTCTCAGTGGTTTACATGCCTCTGAAACTATGTGCAATAT
2481 TTTTGGTTGACACTTGTATCCATCCTTAAGAAATTAGTGCAGATTGCAGATGTTCTGTCTTCCATCCCAAACAAGCCTGC
2561 CATGAGGTAGGATCCTAGGGGTTTGGCTGTTCTTACTCCACTGCTCAGAAAGCTTCCATTCTGCTGTCCTCAGCCTCGAC
2641 CCTCTTCTGTGCTGGACTTCCACCCACCCACCCTTTTCAAGTTTAGATAGTGTTTCAGCTGCTGTCCCAAAGTAACAAAA
2721 CAATACCTACTGTTAAGTAGGAAGTCAATCTGTGTGCTGGTTTTGTTGGTTATGTGGAAATCACAAACTCCAGAGGAGCA
2801 AAGGGGTTTTTCAATGTCTTTTGCTTTCAGAAACAGAGAATATAATATTCTCACTAAGGCCTTGAATTGATTTTTTTCTC
2881 ATAAAATAGTCTGATAAGCTAATTTTTAAAAAGAAATGCCATTAACTGTGTTGTATCGTGGTTTAAAATTACTAACAAGT
2961 TGTGGGAAAGAAAAATAATATTTGATTTTGAATCTTAAATGTTTTTAAAAATTAGACTTGAATGGGCACAAAGTATAAAT
3041 ATTTTGTTTCTTTATGGAGGACATGTGGAAGGAGTTTGAGGGTTTGGGATGGGAGAAGTATTTTGCAGAGCTATCAATGT
3121 CCAAATAATTTAAAAAAAAAAATAAAGGTATTTAAGCAGTG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' accaCGU-UUUCA-UUA-----AC-ACCAAAAa 5'
              |:| :|||| |||     || ||||||| 
Target 5' ttaaGTAGGAAGTCAATCTGTGTGCTGGTTTTg 3'
2733 - 2765 157.00 -8.30
2
miRNA  3' accACGUU--UU--CAU----UAACACCAAAaa 5'
             ||| |  ||  ||:    || |||||||  
Target 5' aaaTGCCATTAACTGTGTTGTATCGTGGTTTaa 3'
2914 - 2946 136.00 -10.10
3
miRNA  3' accACGUUUUC-A---UUAACACCAAAaa 5'
             ||| : :| |   |:| |||||||  
Target 5' tcaTGCTGTGGCTCCGAGTAGTGGTTTga 3'
2074 - 2102 134.00 -9.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30549813 5 COSMIC
COSN30459312 51 COSMIC
COSN20078879 52 COSMIC
COSN28617275 71 COSMIC
COSN18723484 177 COSMIC
COSN28878953 189 COSMIC
COSN26586722 301 COSMIC
COSN31592829 316 COSMIC
COSN31538282 317 COSMIC
COSN31537974 350 COSMIC
COSN28753093 466 COSMIC
COSN30543155 473 COSMIC
COSN31545380 535 COSMIC
COSN20113640 919 COSMIC
COSN31550138 971 COSMIC
COSN26567981 1201 COSMIC
COSN26547635 1209 COSMIC
COSN23987615 1238 COSMIC
COSN20113642 1240 COSMIC
COSN20113641 1242 COSMIC
COSN27267879 1243 COSMIC
COSN27484042 1243 COSMIC
COSN6414879 1244 COSMIC
COSN6100060 1312 COSMIC
COSN6100061 1313 COSMIC
COSN7161292 1681 COSMIC
COSN15661651 1757 COSMIC
COSN31564549 2428 COSMIC
COSN19146961 2460 COSMIC
COSN26557712 2486 COSMIC
COSN26636499 2490 COSMIC
COSN1714793 2836 COSMIC
COSN31517497 2874 COSMIC
COSN31610817 2928 COSMIC
COSN31481557 2935 COSMIC
COSN31549806 2960 COSMIC
COSN21438694 3000 COSMIC
COSN26574227 3096 COSMIC
COSN20113643 3143 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs368767539 4 dbSNP
rs556828389 5 dbSNP
rs1352473791 6 dbSNP
rs182006393 11 dbSNP
rs754951439 16 dbSNP
rs777136495 21 dbSNP
rs762065760 22 dbSNP
rs202212854 26 dbSNP
rs200487677 33 dbSNP
rs374407060 37 dbSNP
rs1195886050 42 dbSNP
rs766330483 47 dbSNP
rs1452852717 48 dbSNP
rs1469232566 51 dbSNP
rs906330546 57 dbSNP
rs1002124285 58 dbSNP
rs1486989136 68 dbSNP
rs1222149579 75 dbSNP
rs1033572196 80 dbSNP
rs1261335519 82 dbSNP
rs1232686000 90 dbSNP
rs1267074435 90 dbSNP
rs776918441 91 dbSNP
rs759197628 93 dbSNP
rs1305622985 104 dbSNP
rs891636903 110 dbSNP
rs527297354 111 dbSNP
rs537654439 114 dbSNP
rs1016769822 120 dbSNP
rs961147155 121 dbSNP
rs1301733459 122 dbSNP
rs1464160823 134 dbSNP
rs1156748688 135 dbSNP
rs1176011342 138 dbSNP
rs1367318284 148 dbSNP
rs560870144 150 dbSNP
rs529966261 151 dbSNP
rs752594815 173 dbSNP
rs976875552 174 dbSNP
rs549650745 177 dbSNP
rs1028643790 185 dbSNP
rs1430499070 186 dbSNP
rs1302234835 190 dbSNP
rs954483245 192 dbSNP
rs922799976 193 dbSNP
rs932800878 194 dbSNP
rs758301406 198 dbSNP
rs985692365 200 dbSNP
rs569557366 201 dbSNP
rs554516929 213 dbSNP
rs1211426043 216 dbSNP
rs1341410031 221 dbSNP
rs532174655 222 dbSNP
rs1229407549 229 dbSNP
rs1326625701 230 dbSNP
rs1311635392 233 dbSNP
rs764069032 235 dbSNP
rs111656407 242 dbSNP
rs866340298 257 dbSNP
rs551589699 259 dbSNP
rs1317801546 261 dbSNP
rs950171466 268 dbSNP
rs372558160 273 dbSNP
rs1046192572 275 dbSNP
rs1245705255 278 dbSNP
rs1289972460 279 dbSNP
rs1166485121 281 dbSNP
rs568337299 285 dbSNP
rs571677054 296 dbSNP
rs906382502 303 dbSNP
rs1002024779 305 dbSNP
rs948320025 312 dbSNP
rs1033619728 316 dbSNP
rs888362864 317 dbSNP
rs375899354 326 dbSNP
rs1270848444 329 dbSNP
rs756793769 331 dbSNP
rs1232424019 332 dbSNP
rs1045069682 334 dbSNP
rs1231029244 335 dbSNP
rs780649735 341 dbSNP
rs113095389 350 dbSNP
rs745555856 351 dbSNP
rs1387022799 361 dbSNP
rs1412145077 374 dbSNP
rs1052472360 383 dbSNP
rs187613009 384 dbSNP
rs1165715019 391 dbSNP
rs1042882649 395 dbSNP
rs1162762701 400 dbSNP
rs962044535 400 dbSNP
rs755258844 401 dbSNP
rs1029800902 403 dbSNP
rs904460685 404 dbSNP
rs377044974 406 dbSNP
rs567647635 407 dbSNP
rs1266345823 414 dbSNP
rs878984525 415 dbSNP
rs985573099 431 dbSNP
rs536983508 435 dbSNP
rs926245233 445 dbSNP
rs1336450524 452 dbSNP
rs1353509094 461 dbSNP
rs1227230331 465 dbSNP
rs779385920 466 dbSNP
rs1008529318 470 dbSNP
rs1338046215 472 dbSNP
rs1384199487 473 dbSNP
rs1336895853 474 dbSNP
rs1323285920 477 dbSNP
rs1452530398 489 dbSNP
rs1014700573 497 dbSNP
rs62073572 498 dbSNP
rs1456915281 501 dbSNP
rs372995336 506 dbSNP
rs913234703 509 dbSNP
rs114488581 517 dbSNP
rs1305917684 519 dbSNP
rs1205666946 520 dbSNP
rs920756486 524 dbSNP
rs1470888714 527 dbSNP
rs545542437 528 dbSNP
rs1182883149 531 dbSNP
rs1253410090 536 dbSNP
rs1484606760 538 dbSNP
rs558383614 539 dbSNP
rs937867309 540 dbSNP
rs1285691216 541 dbSNP
rs1223904457 546 dbSNP
rs1351991939 572 dbSNP
rs1303406562 580 dbSNP
rs572079258 581 dbSNP
rs888248009 588 dbSNP
rs540747850 589 dbSNP
rs1463682846 592 dbSNP
rs1401425198 593 dbSNP
rs773921079 593 dbSNP
rs1178040514 603 dbSNP
rs553706890 609 dbSNP
rs1005472082 611 dbSNP
rs1187725904 613 dbSNP
rs1474210927 617 dbSNP
rs1469783139 623 dbSNP
rs1215883471 628 dbSNP
rs946803269 637 dbSNP
rs34352683 646 dbSNP
rs560585280 652 dbSNP
rs1037334601 653 dbSNP
rs1214388550 659 dbSNP
rs576936979 659 dbSNP
rs529632620 660 dbSNP
rs1360126980 662 dbSNP
rs370488654 666 dbSNP
rs896833925 670 dbSNP
rs998249220 673 dbSNP
rs543360669 682 dbSNP
rs1431768264 688 dbSNP
rs374931142 692 dbSNP
rs953791498 696 dbSNP
rs1007044783 697 dbSNP
rs1033147189 698 dbSNP
rs1436455235 705 dbSNP
rs1376048846 708 dbSNP
rs1167697482 711 dbSNP
rs1408071111 718 dbSNP
rs1421192688 726 dbSNP
rs931770052 730 dbSNP
rs1263881704 738 dbSNP
rs1472276725 740 dbSNP
rs1486921013 745 dbSNP
rs1322891344 747 dbSNP
rs191537184 754 dbSNP
rs957731057 759 dbSNP
rs989095230 761 dbSNP
rs1276458579 770 dbSNP
rs563197326 776 dbSNP
rs747020919 777 dbSNP
rs971446199 779 dbSNP
rs1050337866 782 dbSNP
rs1448597652 782 dbSNP
rs532218416 784 dbSNP
rs1215346136 787 dbSNP
rs183844554 789 dbSNP
rs1241293307 802 dbSNP
rs559258582 807 dbSNP
rs1476674212 813 dbSNP
rs927395884 821 dbSNP
rs937417432 828 dbSNP
rs1356008763 830 dbSNP
rs1297602088 834 dbSNP
rs1014580750 844 dbSNP
rs1429493604 848 dbSNP
rs527817117 858 dbSNP
rs1170903751 859 dbSNP
rs1460570054 864 dbSNP
rs547562793 867 dbSNP
rs897594713 885 dbSNP
rs771059671 888 dbSNP
rs567708232 895 dbSNP
rs1250438232 896 dbSNP
rs1177067381 902 dbSNP
rs941164604 903 dbSNP
rs1234910785 908 dbSNP
rs1036982631 910 dbSNP
rs545880930 913 dbSNP
rs186134902 914 dbSNP
rs201501556 914 dbSNP
rs997898387 915 dbSNP
rs1271580489 917 dbSNP
rs980881035 918 dbSNP
rs190114098 919 dbSNP
rs1401777864 921 dbSNP
rs550503063 926 dbSNP
rs889414593 927 dbSNP
rs759838521 929 dbSNP
rs1006596491 931 dbSNP
rs1032698532 948 dbSNP
rs893317703 959 dbSNP
rs960931908 962 dbSNP
rs1407051132 969 dbSNP
rs1439978197 983 dbSNP
rs144727409 988 dbSNP
rs754266478 996 dbSNP
rs867398662 999 dbSNP
rs1461643303 1001 dbSNP
rs1345078213 1008 dbSNP
rs182753419 1010 dbSNP
rs972048838 1012 dbSNP
rs946824711 1013 dbSNP
rs979549328 1015 dbSNP
rs1281298332 1021 dbSNP
rs1352823143 1025 dbSNP
rs921309975 1028 dbSNP
rs1469089509 1030 dbSNP
rs1283356826 1031 dbSNP
rs111921390 1036 dbSNP
rs1050225164 1041 dbSNP
rs1224387162 1050 dbSNP
rs890409201 1052 dbSNP
rs1233489920 1054 dbSNP
rs765417473 1065 dbSNP
rs186706351 1068 dbSNP
rs958673238 1069 dbSNP
rs534757716 1070 dbSNP
rs775244350 1078 dbSNP
rs1454945765 1079 dbSNP
rs909284865 1084 dbSNP
rs1347457032 1085 dbSNP
rs554241541 1086 dbSNP
rs941230387 1087 dbSNP
rs762795487 1096 dbSNP
rs539086977 1097 dbSNP
rs897484923 1099 dbSNP
rs1195942739 1101 dbSNP
rs542432232 1103 dbSNP
rs1433963491 1108 dbSNP
rs1158478741 1113 dbSNP
rs994870039 1114 dbSNP
rs574100154 1115 dbSNP
rs58970292 1117 dbSNP
rs191572116 1118 dbSNP
rs1282159183 1123 dbSNP
rs1385297194 1130 dbSNP
rs1002354307 1131 dbSNP
rs60237684 1135 dbSNP
rs796170274 1135 dbSNP
rs1293078334 1136 dbSNP
rs933908493 1138 dbSNP
rs1383562552 1148 dbSNP
rs960982824 1150 dbSNP
rs1434613630 1152 dbSNP
rs566588101 1153 dbSNP
rs1050928838 1155 dbSNP
rs889468887 1163 dbSNP
rs988345088 1165 dbSNP
rs1372875029 1172 dbSNP
rs183834632 1173 dbSNP
rs751510142 1177 dbSNP
rs745723052 1178 dbSNP
rs545747615 1189 dbSNP
rs559512031 1192 dbSNP
rs371160261 1193 dbSNP
rs1351330793 1201 dbSNP
rs528228521 1202 dbSNP
rs1229091994 1205 dbSNP
rs10648639 1209 dbSNP
rs1164285956 1209 dbSNP
rs1259704412 1209 dbSNP
rs1263069417 1209 dbSNP
rs1437184497 1209 dbSNP
rs1474304449 1209 dbSNP
rs199754561 1209 dbSNP
rs35741562 1209 dbSNP
rs532900582 1209 dbSNP
rs59781791 1209 dbSNP
rs796872280 1209 dbSNP
rs985987457 1209 dbSNP
rs1248097431 1210 dbSNP
rs1491249014 1210 dbSNP
rs1272233044 1211 dbSNP
rs1457927176 1211 dbSNP
rs756272122 1212 dbSNP
rs1010437799 1214 dbSNP
rs1293399411 1218 dbSNP
rs1252103242 1220 dbSNP
rs1327242204 1238 dbSNP
rs1393558401 1238 dbSNP
rs1420047528 1241 dbSNP
rs1163935619 1242 dbSNP
rs1491527887 1242 dbSNP
rs369997550 1242 dbSNP
rs878915044 1244 dbSNP
rs1252165585 1245 dbSNP
rs1211385775 1247 dbSNP
rs562177840 1248 dbSNP
rs1469562467 1250 dbSNP
rs750097611 1253 dbSNP
rs1289935951 1256 dbSNP
rs1204089286 1258 dbSNP
rs1020879477 1261 dbSNP
rs150977174 1262 dbSNP
rs944641754 1266 dbSNP
rs1036292201 1275 dbSNP
rs1003144027 1276 dbSNP
rs756671875 1280 dbSNP
rs1400266285 1289 dbSNP
rs1382890923 1294 dbSNP
rs189254455 1297 dbSNP
rs1385002324 1304 dbSNP
rs1456619600 1312 dbSNP
rs530153024 1313 dbSNP
rs1397429683 1343 dbSNP
rs930336513 1344 dbSNP
rs767084628 1353 dbSNP
rs1329329912 1361 dbSNP
rs574194205 1364 dbSNP
rs1049190782 1365 dbSNP
rs193097868 1375 dbSNP
rs879677110 1376 dbSNP
rs879867339 1381 dbSNP
rs1246982880 1390 dbSNP
rs1191839350 1395 dbSNP
rs904973958 1396 dbSNP
rs962432011 1399 dbSNP
rs972141634 1410 dbSNP
rs185113226 1411 dbSNP
rs1219361925 1416 dbSNP
rs918420258 1423 dbSNP
rs1320862278 1424 dbSNP
rs1242282434 1437 dbSNP
rs933803828 1438 dbSNP
rs1056591861 1443 dbSNP
rs1275597816 1445 dbSNP
rs986693404 1448 dbSNP
rs1324715538 1449 dbSNP
rs552553846 1451 dbSNP
rs1420201262 1452 dbSNP
rs566265544 1454 dbSNP
rs1171509731 1455 dbSNP
rs942394011 1456 dbSNP
rs1166897610 1458 dbSNP
rs1197478275 1462 dbSNP
rs1054041768 1473 dbSNP
rs968677620 1479 dbSNP
rs1000902940 1483 dbSNP
rs892767764 1485 dbSNP
rs74633559 1486 dbSNP
rs1314253268 1490 dbSNP
rs188988227 1491 dbSNP
rs1184720054 1492 dbSNP
rs1337744372 1509 dbSNP
rs1280148962 1514 dbSNP
rs1400753905 1527 dbSNP
rs1354738399 1532 dbSNP
rs912618979 1538 dbSNP
rs1422466867 1542 dbSNP
rs370898767 1543 dbSNP
rs1359474812 1545 dbSNP
rs1169519863 1546 dbSNP
rs907376608 1547 dbSNP
rs1195697376 1552 dbSNP
rs574177034 1559 dbSNP
rs1407824248 1567 dbSNP
rs1003027870 1570 dbSNP
rs1056079470 1571 dbSNP
rs1170754537 1581 dbSNP
rs1474558151 1586 dbSNP
rs1415044689 1607 dbSNP
rs140839416 1616 dbSNP
rs919208664 1625 dbSNP
rs1006263362 1627 dbSNP
rs1016688535 1628 dbSNP
rs962033154 1631 dbSNP
rs1204328899 1638 dbSNP
rs1168699153 1646 dbSNP
rs994008413 1649 dbSNP
rs758117520 1653 dbSNP
rs1260312441 1654 dbSNP
rs1219486378 1655 dbSNP
rs1408345743 1657 dbSNP
rs1470942042 1660 dbSNP
rs1291538507 1666 dbSNP
rs2955372 1673 dbSNP
rs772653659 1674 dbSNP
rs1378301629 1676 dbSNP
rs1394078229 1687 dbSNP
rs955237481 1692 dbSNP
rs1439821552 1704 dbSNP
rs926282810 1709 dbSNP
rs1331544842 1717 dbSNP
rs1460619153 1718 dbSNP
rs150150097 1719 dbSNP
rs541380701 1720 dbSNP
rs1255651434 1740 dbSNP
rs1176984206 1741 dbSNP
rs1325045773 1755 dbSNP
rs1468863971 1759 dbSNP
rs546083763 1766 dbSNP
rs1240428661 1769 dbSNP
rs1199450923 1773 dbSNP
rs911171876 1776 dbSNP
rs937644456 1789 dbSNP
rs963937600 1793 dbSNP
rs1223926706 1794 dbSNP
rs1203702837 1808 dbSNP
rs8073401 1815 dbSNP
rs1222022948 1817 dbSNP
rs896216932 1820 dbSNP
rs1009751407 1824 dbSNP
rs1391898467 1829 dbSNP
rs1439671264 1829 dbSNP
rs1042938609 1834 dbSNP
rs1458029328 1836 dbSNP
rs1344097422 1838 dbSNP
rs573036200 1843 dbSNP
rs1158942029 1844 dbSNP
rs1418432870 1847 dbSNP
rs76619863 1849 dbSNP
rs1179699135 1859 dbSNP
rs1265603589 1861 dbSNP
rs1453972148 1861 dbSNP
rs1192983944 1863 dbSNP
rs1001523785 1886 dbSNP
rs372856308 1888 dbSNP
rs945701488 1889 dbSNP
rs530239297 1890 dbSNP
rs117968475 1893 dbSNP
rs1191745732 1896 dbSNP
rs1030571766 1899 dbSNP
rs938868169 1904 dbSNP
rs1368332603 1905 dbSNP
rs564469359 1908 dbSNP
rs894616051 1909 dbSNP
rs1398659409 1913 dbSNP
rs563710113 1913 dbSNP
rs532355960 1916 dbSNP
rs1363055455 1925 dbSNP
rs1006483173 1926 dbSNP
rs1175722268 1933 dbSNP
rs778369865 1934 dbSNP
rs1358522681 1937 dbSNP
rs117510598 1938 dbSNP
rs1178447979 1940 dbSNP
rs1434016550 1943 dbSNP
rs961744625 1948 dbSNP
rs971945148 1951 dbSNP
rs1306035109 1953 dbSNP
rs919081517 1958 dbSNP
rs952029057 1958 dbSNP
rs984680870 1960 dbSNP
rs117878802 1961 dbSNP
rs1345400580 1969 dbSNP
rs897835027 1971 dbSNP
rs367827924 1973 dbSNP
rs1233466844 1976 dbSNP
rs1275937905 1978 dbSNP
rs1030856554 1979 dbSNP
rs747577040 1981 dbSNP
rs1007565284 1982 dbSNP
rs1346179637 1983 dbSNP
rs1401366827 1987 dbSNP
rs1342930097 1992 dbSNP
rs1299970475 2006 dbSNP
rs1311024209 2007 dbSNP
rs1305006149 2009 dbSNP
rs764227176 2010 dbSNP
rs937696954 2012 dbSNP
rs1372781878 2018 dbSNP
rs1018066327 2019 dbSNP
rs991756065 2028 dbSNP
rs917695484 2031 dbSNP
rs1424446551 2038 dbSNP
rs1187074617 2039 dbSNP
rs1214847309 2040 dbSNP
rs945102470 2041 dbSNP
rs1042601656 2046 dbSNP
rs548349984 2047 dbSNP
rs936822667 2051 dbSNP
rs1220090346 2056 dbSNP
rs1490559541 2057 dbSNP
rs1050009657 2058 dbSNP
rs1190745932 2063 dbSNP
rs890011331 2071 dbSNP
rs1233180165 2072 dbSNP
rs1339280764 2076 dbSNP
rs140446267 2082 dbSNP
rs1161173449 2089 dbSNP
rs117230643 2090 dbSNP
rs914480463 2093 dbSNP
rs1418871122 2100 dbSNP
rs73303895 2108 dbSNP
rs1019607113 2113 dbSNP
rs781305634 2135 dbSNP
rs762037265 2136 dbSNP
rs897275992 2141 dbSNP
rs766099394 2144 dbSNP
rs570476714 2145 dbSNP
rs928401215 2148 dbSNP
rs938422954 2149 dbSNP
rs539055359 2151 dbSNP
rs1055515446 2153 dbSNP
rs1200082083 2155 dbSNP
rs1457967071 2160 dbSNP
rs951974215 2163 dbSNP
rs984564987 2169 dbSNP
rs1224915108 2174 dbSNP
rs1267684324 2177 dbSNP
rs916102015 2185 dbSNP
rs1308372800 2186 dbSNP
rs1307570333 2187 dbSNP
rs1033571472 2204 dbSNP
rs1377988086 2221 dbSNP
rs959269160 2222 dbSNP
rs942185386 2225 dbSNP
rs553267905 2226 dbSNP
rs1452989447 2236 dbSNP
rs745984018 2239 dbSNP
rs1180331912 2250 dbSNP
rs898060366 2254 dbSNP
rs1252068029 2257 dbSNP
rs1360524545 2260 dbSNP
rs1221073290 2262 dbSNP
rs1196313147 2266 dbSNP
rs1452777689 2268 dbSNP
rs751406420 2268 dbSNP
rs770045194 2272 dbSNP
rs1051779446 2274 dbSNP
rs78417113 2278 dbSNP
rs1177813128 2296 dbSNP
rs1242841259 2303 dbSNP
rs1007616125 2305 dbSNP
rs1238726412 2306 dbSNP
rs1354678538 2309 dbSNP
rs1274414090 2318 dbSNP
rs925019088 2324 dbSNP
rs1017613677 2325 dbSNP
rs1332854423 2328 dbSNP
rs899703852 2340 dbSNP
rs1438992701 2342 dbSNP
rs1324315953 2345 dbSNP
rs1381561311 2354 dbSNP
rs775757783 2357 dbSNP
rs191555982 2361 dbSNP
rs1021997848 2366 dbSNP
rs1160236597 2372 dbSNP
rs1156683556 2376 dbSNP
rs1394267073 2378 dbSNP
rs1420013739 2378 dbSNP
rs967310421 2382 dbSNP
rs555616339 2385 dbSNP
rs575469760 2386 dbSNP
rs1347709812 2399 dbSNP
rs754824819 2403 dbSNP
rs1443742056 2406 dbSNP
rs890063684 2408 dbSNP
rs977711131 2409 dbSNP
rs1298197368 2416 dbSNP
rs145196969 2420 dbSNP
rs184092527 2421 dbSNP
rs1217646803 2424 dbSNP
rs754738141 2426 dbSNP
rs768461566 2428 dbSNP
rs915652013 2429 dbSNP
rs942217114 2438 dbSNP
rs973595316 2439 dbSNP
rs1299896966 2441 dbSNP
rs1228058715 2442 dbSNP
rs1288031211 2446 dbSNP
rs919536409 2460 dbSNP
rs532577992 2461 dbSNP
rs929576913 2464 dbSNP
rs768809461 2470 dbSNP
rs888509639 2474 dbSNP
rs1166803636 2478 dbSNP
rs545860028 2481 dbSNP
rs1476516529 2490 dbSNP
rs1205382797 2497 dbSNP
rs1425159928 2502 dbSNP
rs1006039188 2516 dbSNP
rs1488919904 2522 dbSNP
rs1237229431 2524 dbSNP
rs1033457022 2544 dbSNP
rs774231058 2551 dbSNP
rs1279521674 2556 dbSNP
rs1176674308 2563 dbSNP
rs1244840558 2564 dbSNP
rs4473258 2570 dbSNP
rs1316092143 2572 dbSNP
rs943359393 2588 dbSNP
rs374058050 2607 dbSNP
rs188091523 2608 dbSNP
rs1201795633 2609 dbSNP
rs893886587 2614 dbSNP
rs1011857276 2619 dbSNP
rs966783251 2623 dbSNP
rs1359530739 2626 dbSNP
rs1021464112 2630 dbSNP
rs1170856536 2635 dbSNP
rs1463752972 2637 dbSNP
rs902979411 2638 dbSNP
rs1170818443 2639 dbSNP
rs528778725 2644 dbSNP
rs1464566306 2646 dbSNP
rs1478429153 2647 dbSNP
rs1339297421 2650 dbSNP
rs1180632993 2661 dbSNP
rs925050494 2665 dbSNP
rs998803126 2666 dbSNP
rs1178218098 2670 dbSNP
rs957753849 2673 dbSNP
rs58364586 2674 dbSNP
rs1447769099 2678 dbSNP
rs1321044097 2682 dbSNP
rs1282773999 2685 dbSNP
rs1229972894 2690 dbSNP
rs35685130 2706 dbSNP
rs911384172 2715 dbSNP
rs34534034 2721 dbSNP
rs1364432999 2731 dbSNP
rs944152850 2755 dbSNP
rs1215350764 2758 dbSNP
rs142427529 2759 dbSNP
rs1331435970 2760 dbSNP
rs1456911447 2763 dbSNP
rs918821533 2769 dbSNP
rs991135201 2787 dbSNP
rs1205591710 2791 dbSNP
rs1264929510 2793 dbSNP
rs1407605475 2803 dbSNP
rs531008576 2807 dbSNP
rs1178466454 2813 dbSNP
rs550692608 2814 dbSNP
rs929980794 2815 dbSNP
rs1179499538 2819 dbSNP
rs1209237571 2819 dbSNP
rs1133710 2826 dbSNP
rs1048377430 2830 dbSNP
rs1223616638 2835 dbSNP
rs888551793 2835 dbSNP
rs1001572256 2844 dbSNP
rs1237776683 2850 dbSNP
rs1355593833 2851 dbSNP
rs1309461369 2855 dbSNP
rs1385900972 2860 dbSNP
rs1476215106 2868 dbSNP
rs1294815946 2871 dbSNP
rs865834516 2883 dbSNP
rs1439196856 2898 dbSNP
rs1022760706 2901 dbSNP
rs572598057 2902 dbSNP
rs1158412460 2903 dbSNP
rs894992527 2906 dbSNP
rs1382567638 2910 dbSNP
rs1160041394 2914 dbSNP
rs1432849110 2918 dbSNP
rs767399871 2919 dbSNP
rs1193036312 2920 dbSNP
rs1488757723 2923 dbSNP
rs1262303547 2927 dbSNP
rs1025331662 2938 dbSNP
rs73979257 2939 dbSNP
rs1286514345 2950 dbSNP
rs752640831 2951 dbSNP
rs1310129200 2957 dbSNP
rs1032001655 2959 dbSNP
rs1219371109 2962 dbSNP
rs1339276883 2963 dbSNP
rs919451945 2966 dbSNP
rs1398715621 2969 dbSNP
rs1403611516 2971 dbSNP
rs1414394745 2973 dbSNP
rs1332654162 2977 dbSNP
rs929434941 2982 dbSNP
rs1376192225 2995 dbSNP
rs749931890 2997 dbSNP
rs1423036869 3000 dbSNP
rs1480772738 3000 dbSNP
rs985213606 3004 dbSNP
rs1400938953 3007 dbSNP
rs912125729 3008 dbSNP
rs1199723447 3021 dbSNP
rs371432648 3037 dbSNP
rs1482069875 3041 dbSNP
rs1257321670 3042 dbSNP
rs1210400021 3052 dbSNP
rs1316689873 3058 dbSNP
rs1275787092 3064 dbSNP
rs943411635 3065 dbSNP
rs539448673 3066 dbSNP
rs1217303943 3078 dbSNP
rs1342988832 3087 dbSNP
rs1338617397 3088 dbSNP
rs1395877173 3090 dbSNP
rs1225439281 3094 dbSNP
rs1400535614 3097 dbSNP
rs1275501664 3109 dbSNP
rs1304759350 3117 dbSNP
rs965554384 3125 dbSNP
rs1218547705 3128 dbSNP
rs1168686077 3129 dbSNP
rs1276307369 3129 dbSNP
rs1448544284 3130 dbSNP
rs1468609482 3131 dbSNP
rs113803887 3132 dbSNP
rs1457072754 3132 dbSNP
rs386385792 3132 dbSNP
rs552716913 3132 dbSNP
rs566440604 3133 dbSNP
rs1200044451 3136 dbSNP
rs1252346919 3137 dbSNP
rs918863197 3137 dbSNP
rs566238491 3138 dbSNP
rs1048915221 3139 dbSNP
rs544514761 3140 dbSNP
rs747988985 3140 dbSNP
rs1376519738 3141 dbSNP
rs1467192292 3141 dbSNP
rs1491141080 3142 dbSNP
rs386385793 3142 dbSNP
rs937310542 3142 dbSNP
rs1055811288 3143 dbSNP
rs33929259 3143 dbSNP
rs1164030153 3144 dbSNP
rs1438680001 3148 dbSNP
rs1236050791 3149 dbSNP
rs1478015815 3150 dbSNP
rs1180126308 3153 dbSNP
rs201071466 3154 dbSNP
rs946826179 3162 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000268719.4 | 3UTR | AAUACCUACUGUUAAGUAGGAAGUCAAUCUGUGUGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
168 hsa-miR-548t-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059365 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT072839 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 6
MIRT076945 PCGF2 polycomb group ring finger 2 2 6
MIRT083941 TFAP2C transcription factor AP-2 gamma 2 2
MIRT085401 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT109790 KLHL15 kelch like family member 15 2 2
MIRT114046 AKAP11 A-kinase anchoring protein 11 2 10
MIRT130165 TXNIP thioredoxin interacting protein 2 6
MIRT150013 MIDN midnolin 2 2
MIRT181258 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT205594 NCL nucleolin 2 2
MIRT222253 ACTB actin beta 2 4
MIRT245653 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT250947 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT252497 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT271990 ARF1 ADP ribosylation factor 1 2 4
MIRT280804 RNF11 ring finger protein 11 2 2
MIRT293803 FEM1A fem-1 homolog A 2 2
MIRT318231 RREB1 ras responsive element binding protein 1 2 2
MIRT341455 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT347413 CEBPG CCAAT/enhancer binding protein gamma 2 4
MIRT351860 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT357983 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT377094 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT407303 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT441564 LMOD3 leiomodin 3 2 2
MIRT442364 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT443228 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT443404 HMX3 H6 family homeobox 3 2 2
MIRT446055 NR5A2 nuclear receptor subfamily 5 group A member 2 2 2
MIRT448277 ZNF652 zinc finger protein 652 2 2
MIRT450822 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT453016 CCDC115 coiled-coil domain containing 115 2 17
MIRT454463 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta 2 2
MIRT456360 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT460007 DNALI1 dynein axonemal light intermediate chain 1 2 2
MIRT463154 ZNF385A zinc finger protein 385A 2 6
MIRT463766 YPEL2 yippee like 2 2 2
MIRT468310 SFT2D2 SFT2 domain containing 2 2 2
MIRT470668 POLR2D RNA polymerase II subunit D 2 4
MIRT478517 CTTN cortactin 2 2
MIRT480507 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT484718 INHBA inhibin beta A subunit 2 12
MIRT485494 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT487302 SLC38A9 solute carrier family 38 member 9 2 2
MIRT487771 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491876 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494304 CEP120 centrosomal protein 120 2 2
MIRT495396 TRIM24 tripartite motif containing 24 2 2
MIRT495646 CDK1 cyclin dependent kinase 1 2 2
MIRT496665 TMEM237 transmembrane protein 237 2 2
MIRT496837 ZNF460 zinc finger protein 460 2 2
MIRT498638 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT503928 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT506063 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT506582 MIER3 MIER family member 3 2 4
MIRT506606 MAT2A methionine adenosyltransferase 2A 2 4
MIRT506844 KIF23 kinesin family member 23 2 6
MIRT508536 RPP14 ribonuclease P/MRP subunit p14 2 4
MIRT509669 ZNF354B zinc finger protein 354B 2 10
MIRT511170 MBNL3 muscleblind like splicing regulator 3 2 6
MIRT512147 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT512831 ID4 inhibitor of DNA binding 4, HLH protein 2 6
MIRT514558 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515856 AJAP1 adherens junctions associated protein 1 2 4
MIRT521848 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT525364 SYNM synemin 2 2
MIRT527120 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT527271 FBLN2 fibulin 2 2 2
MIRT527439 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527658 CD300E CD300e molecule 2 2
MIRT528334 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529033 EXOC8 exocyst complex component 8 2 2
MIRT529321 PDE5A phosphodiesterase 5A 2 2
MIRT529677 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT529846 SMTN smoothelin 2 2
MIRT530385 ZNF431 zinc finger protein 431 2 2
MIRT530913 GPR85 G protein-coupled receptor 85 2 2
MIRT531794 KDR kinase insert domain receptor 2 2
MIRT532246 KLF2 Kruppel like factor 2 2 4
MIRT532658 CBX7 chromobox 7 2 2
MIRT533630 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT534811 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT534975 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536588 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT536779 HNRNPD heterogeneous nuclear ribonucleoprotein D 2 2
MIRT538764 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539294 ANGEL2 angel homolog 2 2 2
MIRT539621 SHISA9 shisa family member 9 2 2
MIRT539651 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540347 OPHN1 oligophrenin 1 2 2
MIRT540413 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541396 CDC27 cell division cycle 27 2 2
MIRT542916 HSBP1 heat shock factor binding protein 1 2 2
MIRT544710 EIF5A eukaryotic translation initiation factor 5A 2 4
MIRT544998 MFF mitochondrial fission factor 2 4
MIRT553289 TSPAN3 tetraspanin 3 2 2
MIRT553455 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT553782 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT554656 ROBO1 roundabout guidance receptor 1 2 2
MIRT555104 PURB purine rich element binding protein B 2 2
MIRT557235 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT560861 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561545 SON SON DNA binding protein 2 2
MIRT561554 SLMO2 PRELI domain containing 3B 2 2
MIRT563764 ZNF678 zinc finger protein 678 2 2
MIRT565653 SIX4 SIX homeobox 4 2 2
MIRT568080 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568759 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569078 CADM2 cell adhesion molecule 2 2 2
MIRT569509 THYN1 thymocyte nuclear protein 1 2 2
MIRT571268 CDKN2AIP CDKN2A interacting protein 2 2
MIRT571809 PHF19 PHD finger protein 19 2 2
MIRT572554 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT573782 SLC24A4 solute carrier family 24 member 4 2 4
MIRT576441 Ccdc115 coiled-coil domain containing 115 2 10
MIRT576712 Slc30a3 solute carrier family 30 (zinc transporter), member 3 2 3
MIRT608377 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608484 NKTR natural killer cell triggering receptor 2 6
MIRT610186 FAM49A family with sequence similarity 49 member A 2 2
MIRT611631 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT613534 TRA2B transformer 2 beta homolog 2 2
MIRT616221 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT622370 SALL1 spalt like transcription factor 1 2 2
MIRT624371 CDK12 cyclin dependent kinase 12 2 2
MIRT624995 ZNF665 zinc finger protein 665 2 4
MIRT626875 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627737 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT628490 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT633647 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 4
MIRT634028 SLC30A3 solute carrier family 30 member 3 2 3
MIRT635923 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638287 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT641959 RNF115 ring finger protein 115 2 2
MIRT643573 CTNNA3 catenin alpha 3 2 2
MIRT645180 NOL9 nucleolar protein 9 2 4
MIRT647497 ZNF639 zinc finger protein 639 2 2
MIRT647682 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT648422 MYOZ3 myozenin 3 2 2
MIRT650113 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT651076 ZNF518B zinc finger protein 518B 2 4
MIRT651415 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT651456 XKR4 XK related 4 2 2
MIRT653619 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653637 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654896 POU2F1 POU class 2 homeobox 1 2 2
MIRT656483 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT658016 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit 2 2
MIRT658041 FZD10 frizzled class receptor 10 2 2
MIRT660093 BTBD3 BTB domain containing 3 2 2
MIRT663923 MAGEF1 MAGE family member F1 2 2
MIRT665882 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT669051 CEP128 centrosomal protein 128 2 2
MIRT669711 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT686812 SNX2 sorting nexin 2 2 4
MIRT689883 SOD2 superoxide dismutase 2 2 2
MIRT693274 GLRX2 glutaredoxin 2 2 4
MIRT697056 BCAR1 BCAR1, Cas family scaffolding protein 2 2
MIRT703297 GID4 GID complex subunit 4 homolog 2 2
MIRT704087 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT707719 CDC6 cell division cycle 6 2 2
MIRT708136 GK5 glycerol kinase 5 (putative) 2 2
MIRT709212 KLHL30 kelch like family member 30 2 2
MIRT710062 RWDD2A RWD domain containing 2A 2 2
MIRT712770 POU6F2 POU class 6 homeobox 2 2 2
MIRT715073 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715387 TADA3 transcriptional adaptor 3 2 2
MIRT717712 NCKAP1 NCK associated protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548t Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-548t Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-548t Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-548t Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-548t Vincristine 5978 approved sensitive cell line (W1)
hsa-miR-548t-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-548t-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548t-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

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