miRTarBase - #MIRT703373


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pre-miRNA Information
pre-miRNA hsa-mir-3689d-1   
Genomic Coordinates chr9: 134849609 - 134849682
Description Homo sapiens miR-3689d-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3689d-2   
Genomic Coordinates chr9: 134850277 - 134850356
Description Homo sapiens miR-3689d-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3689d
Sequence 2| GGGAGGUGUGAUCUCACACUCG |23
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs551722268 8 dbSNP
rs143142996 8 dbSNP
rs1236297052 12 dbSNP
rs573148947 14 dbSNP
rs1210004979 14 dbSNP
rs1217460444 14 dbSNP
rs762590109 18 dbSNP
rs574332265 18 dbSNP
rs1164353021 21 dbSNP
rs963741171 21 dbSNP
rs1177416877 22 dbSNP
rs765777344 22 dbSNP
Putative Targets

Gene Information
Gene Symbol GAPVD1   
Synonyms GAPEX5, GAPex-5, RAP6
Description GTPase activating protein and VPS9 domains 1
Transcript NM_015635   
Expression
Putative miRNA Targets on GAPVD1
3'UTR of GAPVD1
(miRNA target sites are highlighted)		 
>GAPVD1|NM_015635|3'UTR
   1 CCAAGACCAAGGCCCACCAAGGCAGCAGACTGTTAATCAGACAAACAGATCTCTGAGAAGGTGCATCAGCTGCTTTGAAG
  81 GCTGAAGATTGTTTTGTATGATACTGCACAGCATCAGGCATTTTAAAGCAGATCTTTACTAAACAGGTTAATGAGCTAAC
 161 AAGCAGGTTCTCTCGTCTTTGGGCTCTTTCCTTTCTGAGTTGCATATTCTATTTTCTTGTCCCCAAGTAGAGACTAGTAC
 241 TACAAAAAGGGACCACATTTTTCAAGTATTTCTAAGTATAAAAAACAAAACAAAAATCTCTTAGGAAATGTCTAGACCTC
 321 CATTCTTGGATTCCCTTTCTTTCCTTTTATTTTAAAAAAGAACAGTACCCCTCTTTTAAGATGCTGTCTTACATTAATGA
 401 GCATCTAATGGAAAGAAGGTATGAGTTGCACTGAGGATTAGAATAGTGGTGCGTTAGTGGCATTATCTATAAATACACTC
 481 ACCTAAATTGAAAGCTAAGAAGGAAATGTAAATATAATATATATTTATATTTGATGTAATATGGACATCTGCAGATTCTA
 561 ATAAACAAGGACTATTGCTGATAGTAGGCTGTGACATACTGTCTTGTGAAATGGTTTCCTTGACAAAATTTAAGCTGAGC
 641 TTAAAAGCAAAAAACAAAAAGTACACAGAAATATTTATTAAAATGTAATACAGTTTATTGAACTTTCTAGGTATGGAGTT
 721 TGATGGACAGGGCTGCCTTTAATGAGTGTGAAGGTCACTAAGTCACTTAGACATCTCACCGTGGAAGTTTGTGAGCCTGC
 801 ATTAGGAGATAGACTGATTACCATACATGACATAAAAAGGAACAGTGGATAGCTCATACTTTATGGTGGTTCTTCTCCTC
 881 CGAAATAATATACTGCAGAAATCCCAGACAGAGCTCCTTACAAACCTTTAATTGTAATATATTTTTGATGATTATTCACA
 961 TTGAATGCACAGACCAAGAATTCAGTGAATGTCATTTTTTAAAAAACTAATTTGTATTGTCTGCTCTAGTGATACAAGTT
1041 TTACTAGTGATAAACTATTTTAATCAACCATACTATTCTTATGGAAAAAAATATCTATTTTGGCAGGTTTCTGTGCCTTT
1121 ATTTCCCTCTTCTGAAAAAAAGTCTGTGTTTTCATAGTTTGGTTTGCATTGTATATCAATAATTAATCAGGAATGGGTTT
1201 TGGTGCCTGAAAAATTGGCCATGGAGGCACACCAAAGCTTCAAGCACAAGTCTTGTACATGGGCCATCACTGTCTGGTTT
1281 CACTTCGTGTGTTTCCTAAACACATTTAGCTGCTTTTTTAACAAACTCAGCCCCATACTTGAGTCCCTTGTTGTTGGGAG
1361 CATTTCCAGGCATCTTTTAAGGGAACTGTGACAAACAGCCTCGGGCAGATGAACACGGAGGCTCTCTGTTGTCTGTCTCT
1441 GAGATCTTTGTGTCTGGGAATGCCTAAAGATTTTATTTTTTTTTCTTTGTTTTTATTTTATTTTATTTTATTTTTTTGAG
1521 ACAGAGTCTCACCCTGTTGCCCAGGCTGGAGTGCAATGGTGCGATCTTGGCTCACTGCAACCTCCACCTCCCAGTTCAAG
1601 TGATTCCCCTGCCTCAGCCTCGCGAGTAGCTAGGACTACAGGCGCATGTCACCAAGCCCGGCTAATTTTTGTATTTTTAG
1681 TAGAAACGGGGTTTCACCATGTTGGCCAGGATGATCCTCAATCTCCTGACCTCGTGATCCACCCGCCTTGGCCTCCCAAA
1761 GTGCGGGATTACAAGCGTGAACCACCCTGCCCAGCCAGAAACTAGATTTTCTTTATGCCTCCACCCCTTCTTATTCATTT
1841 ACTTTACAATACCAAAATAACAAATTGCATAGGAGTGTGGGATGTGGTTTCTGCCTTCTAGAGAGAGATCAGAATTAAAC
1921 TAGTACTATGAAATGTCCTTTTGAATGTTAGGTCAAGAAATCCATGTACAGAGTCGTGCACTTCATTGGCTGTAACTGTC
2001 AAACTTGCCTTGTATTAGAAGTTAAATCCCATCGTAAATACATCACGAGGCCAGCTGTGTGATTTCTGAGACCTAGATGA
2081 GAGTCCATTTACTTCAGCCTTTGATTCAGTAAATGTTAAGCAGCAGAAGACTTCGAATGGTTGAAATTCATTGTTACAGG
2161 ATTTAACTCATAAACCAATGAGAGATTTTTTTTTTCTCTGCAATGGTTGCTAAGTCTATTCCATGTTAACACTGTGGAAA
2241 TAAATATGAAGATGTGGACATTGCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gcUCACACUCUAGUGUGGAGGg 5'
            | ||  |  || ||||||| 
Target 5' tcACTGCAACCTC-CACCTCCc 3'
 1572 - 1592 147.00 -15.60
2 
miRNA  3' gcUCACACUCUAGUGUGGAGgg 5'
            | |||  |:|: |||:||  
Target 5' tcACTGTCTGGTTTCACTTCgt 3'
 1267 - 1288 124.00 -10.60
3 
miRNA  3' gcucAC-ACUCUAGUGUGGAGGg 5'
              || ||:||  :||::||| 
Target 5' ttgtTGTTGGGA--GCATTTCCa 3'
 1348 - 1368 122.00 -12.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31607060 299 COSMIC
COSN14817473 609 COSMIC
COSN6379968 727 COSMIC
COSN16087049 794 COSMIC
COSN26637516 1256 COSMIC
COSN28666223 1319 COSMIC
COSN27584768 1485 COSMIC
COSN31568197 1958 COSMIC
COSN31532626 1976 COSMIC
COSN31532140 2005 COSMIC
COSN31597505 2063 COSMIC
COSN31537526 2136 COSMIC
COSN31522676 2149 COSMIC
COSN4924839 3091 COSMIC
COSN9277617 3696 COSMIC
COSN6379969 3743 COSMIC
COSN5242238 3812 COSMIC
COSN24375741 4049 COSMIC
COSN16445850 4156 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs200238380 2 dbSNP
rs1258169348 3 dbSNP
rs754008310 6 dbSNP
rs1180770682 8 dbSNP
rs368938521 26 dbSNP
rs373992223 29 dbSNP
rs910199629 30 dbSNP
rs1301149939 31 dbSNP
rs1437997350 34 dbSNP
rs748525972 37 dbSNP
rs1381070604 38 dbSNP
rs1434167325 39 dbSNP
rs1301655251 43 dbSNP
rs1040092573 50 dbSNP
rs745394694 50 dbSNP
rs918972512 51 dbSNP
rs1295034719 52 dbSNP
rs1451958744 57 dbSNP
rs929066139 64 dbSNP
rs377552358 68 dbSNP
rs1411447820 77 dbSNP
rs1160038508 81 dbSNP
rs1048859551 84 dbSNP
rs1473574725 106 dbSNP
rs887637092 109 dbSNP
rs114122436 113 dbSNP
rs182836133 114 dbSNP
rs1269966153 120 dbSNP
rs1055088203 124 dbSNP
rs369565885 130 dbSNP
rs1203735911 132 dbSNP
rs77519090 146 dbSNP
rs896481983 151 dbSNP
rs1013560674 156 dbSNP
rs534255571 157 dbSNP
rs1330672043 161 dbSNP
rs936618629 168 dbSNP
rs186114806 173 dbSNP
rs1020967400 175 dbSNP
rs367774401 176 dbSNP
rs916602520 181 dbSNP
rs189878813 182 dbSNP
rs949456031 184 dbSNP
rs1046434694 185 dbSNP
rs1392154799 186 dbSNP
rs1430940389 190 dbSNP
rs1172039045 198 dbSNP
rs1478673423 203 dbSNP
rs773032904 210 dbSNP
rs558185644 211 dbSNP
rs1001373171 234 dbSNP
rs925788946 236 dbSNP
rs1191531265 241 dbSNP
rs940829922 251 dbSNP
rs1249016959 258 dbSNP
rs1209037145 261 dbSNP
rs1032500374 275 dbSNP
rs1459713098 276 dbSNP
rs746092872 280 dbSNP
rs954381148 280 dbSNP
rs1294509430 282 dbSNP
rs546366808 282 dbSNP
rs985674678 284 dbSNP
rs1199339963 293 dbSNP
rs1019858106 294 dbSNP
rs1381353352 297 dbSNP
rs183214925 301 dbSNP
rs1224984520 303 dbSNP
rs767856915 304 dbSNP
rs573108819 305 dbSNP
rs867600179 309 dbSNP
rs553992170 313 dbSNP
rs1228508563 317 dbSNP
rs918930334 318 dbSNP
rs1380829801 319 dbSNP
rs1333622503 326 dbSNP
rs1319879669 333 dbSNP
rs929056732 334 dbSNP
rs140621225 337 dbSNP
rs1429666427 342 dbSNP
rs541535609 348 dbSNP
rs937874570 351 dbSNP
rs1450963872 364 dbSNP
rs760420140 366 dbSNP
rs187974936 393 dbSNP
rs1442433150 399 dbSNP
rs192005983 401 dbSNP
rs949302675 402 dbSNP
rs113543196 404 dbSNP
rs1341335430 408 dbSNP
rs1275148371 410 dbSNP
rs1342185404 413 dbSNP
rs957962635 420 dbSNP
rs1380901880 421 dbSNP
rs902543236 422 dbSNP
rs1283753377 428 dbSNP
rs1383874091 434 dbSNP
rs1000940499 444 dbSNP
rs991172991 445 dbSNP
rs1426105410 447 dbSNP
rs1165904414 448 dbSNP
rs183145152 453 dbSNP
rs533283803 454 dbSNP
rs1170909323 470 dbSNP
rs1423058132 482 dbSNP
rs138275170 483 dbSNP
rs755288901 497 dbSNP
rs1472920431 504 dbSNP
rs1390402244 507 dbSNP
rs572086590 511 dbSNP
rs1179358890 514 dbSNP
rs1482701186 515 dbSNP
rs1019743777 517 dbSNP
rs965571446 518 dbSNP
rs972987455 522 dbSNP
rs1288867022 524 dbSNP
rs1313779576 534 dbSNP
rs940811500 542 dbSNP
rs1230005923 552 dbSNP
rs1025960946 558 dbSNP
rs1037857948 563 dbSNP
rs1227815648 573 dbSNP
rs950473442 575 dbSNP
rs1351647313 597 dbSNP
rs984548039 598 dbSNP
rs920791300 604 dbSNP
rs932184980 618 dbSNP
rs908919169 632 dbSNP
rs1051095391 639 dbSNP
rs890712922 650 dbSNP
rs1415449820 651 dbSNP
rs1156358669 653 dbSNP
rs937744567 663 dbSNP
rs1412641019 665 dbSNP
rs1184336834 666 dbSNP
rs990626368 671 dbSNP
rs917771490 674 dbSNP
rs949271919 688 dbSNP
rs1221963900 697 dbSNP
rs1042722964 703 dbSNP
rs1040765827 706 dbSNP
rs1208200438 707 dbSNP
rs923964037 711 dbSNP
rs370684679 712 dbSNP
rs902259064 724 dbSNP
rs2030148 726 dbSNP
rs373077206 727 dbSNP
rs1032162971 738 dbSNP
rs879909306 740 dbSNP
rs1351264363 743 dbSNP
rs1484519396 743 dbSNP
rs1318057160 754 dbSNP
rs1183025187 773 dbSNP
rs149204505 774 dbSNP
rs889829443 781 dbSNP
rs1012099096 782 dbSNP
rs1431386598 785 dbSNP
rs1424323595 800 dbSNP
rs1006941850 802 dbSNP
rs562839695 804 dbSNP
rs531593914 805 dbSNP
rs1457481878 809 dbSNP
rs1041183392 823 dbSNP
rs1208416668 824 dbSNP
rs1465487683 827 dbSNP
rs765574407 828 dbSNP
rs1208051249 831 dbSNP
rs750790685 847 dbSNP
rs551782806 854 dbSNP
rs1312156713 856 dbSNP
rs901373686 863 dbSNP
rs994374910 872 dbSNP
rs763624312 874 dbSNP
rs1026349475 881 dbSNP
rs952998131 882 dbSNP
rs571846137 883 dbSNP
rs1290146336 890 dbSNP
rs1464045385 890 dbSNP
rs1358518243 893 dbSNP
rs1006259501 902 dbSNP
rs1015947489 906 dbSNP
rs959084547 914 dbSNP
rs766928754 921 dbSNP
rs917740404 923 dbSNP
rs188262148 926 dbSNP
rs1187675235 935 dbSNP
rs970590535 958 dbSNP
rs982076171 982 dbSNP
rs907905115 994 dbSNP
rs1482936315 998 dbSNP
rs962141906 1002 dbSNP
rs973869410 1009 dbSNP
rs146955217 1022 dbSNP
rs978027594 1025 dbSNP
rs923820697 1027 dbSNP
rs1342435400 1036 dbSNP
rs936604697 1043 dbSNP
rs751708728 1046 dbSNP
rs138048660 1064 dbSNP
rs1050589488 1085 dbSNP
rs374257097 1085 dbSNP
rs911250528 1094 dbSNP
rs912139096 1095 dbSNP
rs1302886415 1098 dbSNP
rs1330048428 1103 dbSNP
rs1247187812 1105 dbSNP
rs1223194397 1108 dbSNP
rs1276587701 1116 dbSNP
rs1416595196 1130 dbSNP
rs1368579146 1135 dbSNP
rs368024430 1135 dbSNP
rs1167763076 1139 dbSNP
rs1430095474 1140 dbSNP
rs1392272718 1142 dbSNP
rs1163022908 1143 dbSNP
rs372482796 1145 dbSNP
rs796146801 1145 dbSNP
rs1040712396 1146 dbSNP
rs1183620611 1163 dbSNP
rs942769549 1164 dbSNP
rs1482376162 1165 dbSNP
rs1251641211 1167 dbSNP
rs377432733 1174 dbSNP
rs1484273682 1180 dbSNP
rs1264042934 1183 dbSNP
rs1232760479 1187 dbSNP
rs1482379188 1190 dbSNP
rs143396691 1196 dbSNP
rs994707848 1204 dbSNP
rs1253050919 1206 dbSNP
rs1472705455 1214 dbSNP
rs541677046 1229 dbSNP
rs1053923319 1236 dbSNP
rs1234547581 1248 dbSNP
rs1348564317 1251 dbSNP
rs1307278227 1253 dbSNP
rs1410349245 1257 dbSNP
rs755065512 1260 dbSNP
rs1012486508 1261 dbSNP
rs1457641726 1265 dbSNP
rs888670669 1267 dbSNP
rs1167193665 1270 dbSNP
rs1005812526 1272 dbSNP
rs970601076 1276 dbSNP
rs1016332472 1278 dbSNP
rs192791555 1287 dbSNP
rs1012001927 1288 dbSNP
rs537420542 1290 dbSNP
rs1309595476 1296 dbSNP
rs557778658 1298 dbSNP
rs1209565762 1302 dbSNP
rs1350955836 1305 dbSNP
rs1487972693 1305 dbSNP
rs10986722 1319 dbSNP
rs1215036684 1323 dbSNP
rs1326538372 1336 dbSNP
rs1287156186 1338 dbSNP
rs970474354 1341 dbSNP
rs1337444198 1348 dbSNP
rs145790062 1351 dbSNP
rs1385942949 1354 dbSNP
rs10986723 1358 dbSNP
rs958181539 1370 dbSNP
rs1455837927 1372 dbSNP
rs1219847136 1373 dbSNP
rs1388048792 1384 dbSNP
rs749014686 1392 dbSNP
rs989435358 1394 dbSNP
rs778452016 1403 dbSNP
rs770866553 1404 dbSNP
rs148263938 1409 dbSNP
rs1198604660 1410 dbSNP
rs747308846 1417 dbSNP
rs1275790792 1418 dbSNP
rs942736534 1421 dbSNP
rs976727594 1424 dbSNP
rs184929181 1434 dbSNP
rs1463247871 1441 dbSNP
rs1197217092 1443 dbSNP
rs1244568087 1446 dbSNP
rs539976219 1447 dbSNP
rs922647575 1450 dbSNP
rs1352749908 1467 dbSNP
rs1191234694 1473 dbSNP
rs1053491875 1476 dbSNP
rs1232421232 1476 dbSNP
rs1254109301 1476 dbSNP
rs562822350 1481 dbSNP
rs893545836 1491 dbSNP
rs1433228872 1496 dbSNP
rs1427740317 1504 dbSNP
rs947831349 1511 dbSNP
rs1254924040 1523 dbSNP
rs368955621 1524 dbSNP
rs1047642250 1528 dbSNP
rs1044863526 1533 dbSNP
rs866803159 1537 dbSNP
rs1172567614 1540 dbSNP
rs1371106294 1542 dbSNP
rs1423713523 1548 dbSNP
rs531883312 1564 dbSNP
rs757574705 1565 dbSNP
rs1333019419 1577 dbSNP
rs1014757281 1578 dbSNP
rs1160924711 1580 dbSNP
rs1437520050 1590 dbSNP
rs941591692 1607 dbSNP
rs370795188 1622 dbSNP
rs2841333 1623 dbSNP
rs532615950 1624 dbSNP
rs552308506 1625 dbSNP
rs527933879 1637 dbSNP
rs986241268 1643 dbSNP
rs367913981 1644 dbSNP
rs1225849462 1645 dbSNP
rs1341730322 1647 dbSNP
rs1031233791 1654 dbSNP
rs188995553 1660 dbSNP
rs1292513840 1661 dbSNP
rs1333558331 1663 dbSNP
rs1452949954 1667 dbSNP
rs1377750735 1687 dbSNP
rs563047077 1688 dbSNP
rs1429443821 1689 dbSNP
rs1391153057 1690 dbSNP
rs1018112329 1691 dbSNP
rs1476170940 1692 dbSNP
rs1221919791 1699 dbSNP
rs1366253840 1701 dbSNP
rs963931170 1705 dbSNP
rs191372218 1707 dbSNP
rs976696428 1710 dbSNP
rs922615476 1712 dbSNP
rs1259445145 1717 dbSNP
rs930036453 1718 dbSNP
rs1189967192 1722 dbSNP
rs1273443017 1725 dbSNP
rs1390668526 1728 dbSNP
rs924822996 1729 dbSNP
rs936307676 1730 dbSNP
rs1161223052 1734 dbSNP
rs1392692428 1735 dbSNP
rs1306778218 1736 dbSNP
rs771523225 1742 dbSNP
rs1317813950 1745 dbSNP
rs141356981 1746 dbSNP
rs1411321562 1747 dbSNP
rs1388080878 1749 dbSNP
rs989533383 1750 dbSNP
rs1298462345 1752 dbSNP
rs1419373136 1760 dbSNP
rs566469767 1765 dbSNP
rs868790579 1766 dbSNP
rs1206298236 1773 dbSNP
rs1286307272 1777 dbSNP
rs941574713 1778 dbSNP
rs1357419002 1782 dbSNP
rs947738704 1787 dbSNP
rs1223594955 1788 dbSNP
rs1351586230 1789 dbSNP
rs1055981382 1792 dbSNP
rs1434680162 1794 dbSNP
rs568855362 1802 dbSNP
rs1210027257 1804 dbSNP
rs760307671 1807 dbSNP
rs1461636333 1815 dbSNP
rs1046068767 1819 dbSNP
rs1441759333 1821 dbSNP
rs1156297987 1822 dbSNP
rs371688451 1824 dbSNP
rs1408535293 1827 dbSNP
rs906222405 1833 dbSNP
rs999679221 1842 dbSNP
rs1036231624 1850 dbSNP
rs1476888326 1853 dbSNP
rs150759057 1865 dbSNP
rs1245886196 1867 dbSNP
rs1030783488 1870 dbSNP
rs893554098 1871 dbSNP
rs1010654456 1872 dbSNP
rs1266331457 1878 dbSNP
rs1018081027 1888 dbSNP
rs1028054142 1891 dbSNP
rs1286898313 1894 dbSNP
rs1217954985 1902 dbSNP
rs1367393327 1903 dbSNP
rs15586 1904 dbSNP
rs768395265 1905 dbSNP
rs557425407 1906 dbSNP
rs1304619511 1908 dbSNP
rs963898084 1916 dbSNP
rs1372645304 1923 dbSNP
rs139144449 1927 dbSNP
rs1433656481 1928 dbSNP
rs1345734523 1931 dbSNP
rs1029601945 1934 dbSNP
rs184580190 1938 dbSNP
rs1321273898 1943 dbSNP
rs1401658022 1944 dbSNP
rs773456017 1951 dbSNP
rs1394794495 1952 dbSNP
rs1173972005 1953 dbSNP
rs763354463 1956 dbSNP
rs189460055 1957 dbSNP
rs574014303 1963 dbSNP
rs1246383844 1965 dbSNP
rs909936317 1966 dbSNP
rs1188031817 1967 dbSNP
rs1243888151 1973 dbSNP
rs963121581 1976 dbSNP
rs542843307 1977 dbSNP
rs999022517 1990 dbSNP
rs1326619640 1997 dbSNP
rs115126005 1999 dbSNP
rs950267459 2001 dbSNP
rs77743789 2013 dbSNP
rs1198242935 2019 dbSNP
rs1362131208 2026 dbSNP
rs545487315 2034 dbSNP
rs968989436 2035 dbSNP
rs375002103 2038 dbSNP
rs760094632 2043 dbSNP
rs1052533275 2047 dbSNP
rs1181146031 2048 dbSNP
rs893530267 2060 dbSNP
rs1168239460 2065 dbSNP
rs1249409757 2077 dbSNP
rs1421811339 2079 dbSNP
rs565106765 2087 dbSNP
rs1039496773 2104 dbSNP
rs1258776902 2112 dbSNP
rs927711508 2114 dbSNP
rs1213492469 2121 dbSNP
rs531995506 2125 dbSNP
rs1226316033 2126 dbSNP
rs1297108291 2127 dbSNP
rs1226080560 2131 dbSNP
rs527693535 2132 dbSNP
rs149520480 2134 dbSNP
rs1174420405 2135 dbSNP
rs919123613 2160 dbSNP
rs1403496141 2167 dbSNP
rs548311290 2168 dbSNP
rs1029616026 2171 dbSNP
rs951384735 2180 dbSNP
rs1004178711 2185 dbSNP
rs1048946548 2186 dbSNP
rs1462698981 2186 dbSNP
rs752817158 2188 dbSNP
rs762786069 2196 dbSNP
rs1352791033 2197 dbSNP
rs1410834520 2199 dbSNP
rs1307189405 2201 dbSNP
rs565922544 2204 dbSNP
rs1007530326 2213 dbSNP
rs1418633544 2214 dbSNP
rs1230379240 2222 dbSNP
rs1257282528 2224 dbSNP
rs568466159 2232 dbSNP
rs1204418774 2233 dbSNP
rs530371587 2255 dbSNP
rs901910846 2258 dbSNP
rs1480774053 2263 dbSNP
rs998979551 2268 dbSNP
rs1218900470 2269 dbSNP
rs777991505 2282 dbSNP
rs1483874705 2288 dbSNP
rs991600854 2293 dbSNP
rs1182661166 2297 dbSNP
rs1235121962 2301 dbSNP
rs916078969 2306 dbSNP
rs971589562 2312 dbSNP
rs367653922 2314 dbSNP
rs753657592 2316 dbSNP
rs757007657 2317 dbSNP
rs773828972 2318 dbSNP
rs146085921 2327 dbSNP
rs140091241 2339 dbSNP
rs1292048879 2340 dbSNP
rs1378342926 2349 dbSNP
rs1023141259 2357 dbSNP
rs114626926 2358 dbSNP
rs980400482 2372 dbSNP
rs927655771 2373 dbSNP
rs960429206 2381 dbSNP
rs1167192473 2386 dbSNP
rs10819047 2388 dbSNP
rs1421303336 2390 dbSNP
rs946448854 2392 dbSNP
rs1430745233 2399 dbSNP
rs1273283502 2408 dbSNP
rs1039469541 2411 dbSNP
rs1327035491 2415 dbSNP
rs570953206 2416 dbSNP
rs1239648624 2418 dbSNP
rs1318540415 2420 dbSNP
rs553852264 2427 dbSNP
rs1298913341 2430 dbSNP
rs997942705 2432 dbSNP
rs1328045699 2439 dbSNP
rs538837846 2440 dbSNP
rs548532146 2441 dbSNP
rs887007492 2445 dbSNP
rs779500440 2452 dbSNP
rs1159696312 2459 dbSNP
rs1455801793 2460 dbSNP
rs1293338408 2464 dbSNP
rs1173341644 2474 dbSNP
rs1453425428 2487 dbSNP
rs1253196239 2491 dbSNP
rs910462810 2503 dbSNP
rs746463387 2504 dbSNP
rs1463198264 2524 dbSNP
rs1260389590 2527 dbSNP
rs1016923326 2534 dbSNP
rs1254038461 2549 dbSNP
rs901816119 2550 dbSNP
rs898522751 2563 dbSNP
rs1348901474 2564 dbSNP
rs1219204950 2573 dbSNP
rs1260580563 2573 dbSNP
rs1400610333 2573 dbSNP
rs1491276023 2573 dbSNP
rs564548863 2573 dbSNP
rs5900652 2573 dbSNP
rs60927969 2573 dbSNP
rs999280060 2580 dbSNP
rs1384763231 2586 dbSNP
rs1175166280 2590 dbSNP
rs1435672462 2590 dbSNP
rs1491297976 2590 dbSNP
rs1302748675 2591 dbSNP
rs1371177917 2592 dbSNP
rs1372053874 2593 dbSNP
rs868044127 2595 dbSNP
rs1193194135 2596 dbSNP
rs1448699029 2598 dbSNP
rs1053172913 2604 dbSNP
rs1210050405 2607 dbSNP
rs1485900172 2611 dbSNP
rs893220507 2622 dbSNP
rs536561479 2624 dbSNP
rs1203352782 2626 dbSNP
rs1295250894 2629 dbSNP
rs1338916306 2630 dbSNP
rs556039518 2634 dbSNP
rs576208429 2639 dbSNP
rs545137555 2643 dbSNP
rs1344269241 2645 dbSNP
rs1023022186 2657 dbSNP
rs971473248 2658 dbSNP
rs1293263998 2664 dbSNP
rs981609172 2666 dbSNP
rs1415900639 2669 dbSNP
rs1023130101 2671 dbSNP
rs1032268905 2674 dbSNP
rs956301814 2676 dbSNP
rs990828095 2680 dbSNP
rs1487622897 2684 dbSNP
rs914907364 2689 dbSNP
rs1003106856 2703 dbSNP
rs946421219 2707 dbSNP
rs1035914667 2709 dbSNP
rs960377387 2718 dbSNP
rs975059590 2722 dbSNP
rs1187219585 2723 dbSNP
rs1475487159 2725 dbSNP
rs1259372579 2726 dbSNP
rs1179315082 2727 dbSNP
rs972141999 2729 dbSNP
rs1026029642 2730 dbSNP
rs768209807 2732 dbSNP
rs984638000 2742 dbSNP
rs558993136 2749 dbSNP
rs1186777441 2761 dbSNP
rs1357847038 2764 dbSNP
rs1050920020 2770 dbSNP
rs1441878369 2803 dbSNP
rs943198456 2808 dbSNP
rs886970196 2835 dbSNP
rs975974171 2843 dbSNP
rs1450676708 2860 dbSNP
rs868151704 2863 dbSNP
rs1391725797 2878 dbSNP
rs923188352 2884 dbSNP
rs1164484833 2888 dbSNP
rs776380286 2910 dbSNP
rs1175287418 2912 dbSNP
rs1038725246 2917 dbSNP
rs898422926 2921 dbSNP
rs1469481152 2923 dbSNP
rs1233210483 2925 dbSNP
rs1012882629 2926 dbSNP
rs1184328135 2932 dbSNP
rs1022989496 2936 dbSNP
rs143554675 2947 dbSNP
rs1294851404 2955 dbSNP
rs893219638 2959 dbSNP
rs558686276 2962 dbSNP
rs1223689063 2963 dbSNP
rs1044528358 2969 dbSNP
rs1281626671 2970 dbSNP
rs1031818588 2971 dbSNP
rs1443941269 2977 dbSNP
rs118171550 2979 dbSNP
rs146790705 2980 dbSNP
rs773141267 2984 dbSNP
rs1440938076 2985 dbSNP
rs1396004481 2988 dbSNP
rs1156886228 2990 dbSNP
rs138654129 2992 dbSNP
rs1318005652 2994 dbSNP
rs897408468 2998 dbSNP
rs1367241883 3004 dbSNP
rs544096578 3016 dbSNP
rs1194483949 3018 dbSNP
rs1026437610 3020 dbSNP
rs1215149338 3038 dbSNP
rs1240429332 3047 dbSNP
rs766077923 3050 dbSNP
rs1215777966 3054 dbSNP
rs1448023779 3068 dbSNP
rs563700382 3070 dbSNP
rs532725886 3074 dbSNP
rs1319634881 3075 dbSNP
rs984511669 3077 dbSNP
rs1246739127 3090 dbSNP
rs1302299197 3093 dbSNP
rs964935052 3094 dbSNP
rs964502086 3096 dbSNP
rs776559579 3111 dbSNP
rs1286592994 3113 dbSNP
rs1429951587 3114 dbSNP
rs975027086 3123 dbSNP
rs552527488 3125 dbSNP
rs1320076686 3131 dbSNP
rs1432686654 3135 dbSNP
rs920943009 3136 dbSNP
rs1455736432 3138 dbSNP
rs1250029086 3139 dbSNP
rs181465292 3143 dbSNP
rs1181857609 3145 dbSNP
rs986978841 3146 dbSNP
rs908369436 3151 dbSNP
rs538169703 3164 dbSNP
rs1038208241 3171 dbSNP
rs1165968500 3178 dbSNP
rs142974725 3183 dbSNP
rs948630219 3184 dbSNP
rs1044402445 3187 dbSNP
rs914584796 3188 dbSNP
rs947422217 3196 dbSNP
rs1456424241 3199 dbSNP
rs907223782 3203 dbSNP
rs1362016455 3206 dbSNP
rs1390296338 3210 dbSNP
rs1044433410 3221 dbSNP
rs1002954859 3222 dbSNP
rs547378319 3224 dbSNP
rs567275763 3230 dbSNP
rs1374690422 3234 dbSNP
rs759651418 3236 dbSNP
rs370098224 3240 dbSNP
rs1436821493 3243 dbSNP
rs768000747 3244 dbSNP
rs1376917969 3248 dbSNP
rs1397515850 3249 dbSNP
rs1012121218 3253 dbSNP
rs775444179 3264 dbSNP
rs1057266080 3267 dbSNP
rs964905735 3272 dbSNP
rs897401668 3275 dbSNP
rs994850279 3280 dbSNP
rs1484045863 3287 dbSNP
rs536522855 3287 dbSNP
rs760757589 3297 dbSNP
rs1184139151 3310 dbSNP
rs1203342802 3311 dbSNP
rs535059031 3314 dbSNP
rs1259417080 3320 dbSNP
rs1231393114 3327 dbSNP
rs996413634 3331 dbSNP
rs1226852395 3333 dbSNP
rs796360613 3336 dbSNP
rs569886320 3343 dbSNP
rs764255277 3345 dbSNP
rs955255314 3348 dbSNP
rs1370878536 3354 dbSNP
rs1297858667 3358 dbSNP
rs1270087236 3363 dbSNP
rs1317525742 3364 dbSNP
rs1402621510 3370 dbSNP
rs986490762 3375 dbSNP
rs1162804200 3377 dbSNP
rs185353097 3382 dbSNP
rs1167577089 3390 dbSNP
rs1005893460 3394 dbSNP
rs961171514 3397 dbSNP
rs117444523 3403 dbSNP
rs1250256807 3404 dbSNP
rs1176329178 3406 dbSNP
rs1480723844 3415 dbSNP
rs572197699 3422 dbSNP
rs1211234976 3430 dbSNP
rs757448749 3433 dbSNP
rs1334100241 3454 dbSNP
rs189808097 3462 dbSNP
rs997349661 3463 dbSNP
rs1469274826 3469 dbSNP
rs1251622610 3479 dbSNP
rs80191729 3484 dbSNP
rs1314975985 3493 dbSNP
rs181123897 3494 dbSNP
rs1392191343 3496 dbSNP
rs1379303665 3498 dbSNP
rs1044371441 3500 dbSNP
rs928610409 3511 dbSNP
rs1295873344 3512 dbSNP
rs1395272823 3512 dbSNP
rs938649700 3516 dbSNP
rs989104029 3521 dbSNP
rs914510931 3532 dbSNP
rs968649100 3535 dbSNP
rs1439954562 3538 dbSNP
rs115262308 3545 dbSNP
rs186565225 3546 dbSNP
rs1467669358 3550 dbSNP
rs1211625726 3551 dbSNP
rs1011677060 3553 dbSNP
rs1259928622 3553 dbSNP
rs1239446402 3563 dbSNP
rs577516044 3573 dbSNP
rs752781204 3574 dbSNP
rs546371258 3577 dbSNP
rs1407769435 3593 dbSNP
rs112169269 3594 dbSNP
rs1371896220 3596 dbSNP
rs750218870 3598 dbSNP
rs758553936 3601 dbSNP
rs1381032272 3608 dbSNP
rs1384821879 3609 dbSNP
rs954986357 3610 dbSNP
rs1289842211 3618 dbSNP
rs779986697 3623 dbSNP
rs1421958027 3626 dbSNP
rs1049083792 3627 dbSNP
rs1171437094 3628 dbSNP
rs1453407733 3629 dbSNP
rs764636294 3634 dbSNP
rs527336404 3641 dbSNP
rs1015272895 3642 dbSNP
rs961404114 3643 dbSNP
rs1212311819 3669 dbSNP
rs1426690723 3671 dbSNP
rs1274563140 3674 dbSNP
rs973839809 3682 dbSNP
rs1482247580 3683 dbSNP
rs746525728 3685 dbSNP
rs1038759833 3692 dbSNP
rs1210459776 3694 dbSNP
rs919753032 3700 dbSNP
rs1234220009 3704 dbSNP
rs997297520 3708 dbSNP
rs1470329656 3709 dbSNP
rs1225273113 3717 dbSNP
rs1325910699 3724 dbSNP
rs969911746 3725 dbSNP
rs547538934 3728 dbSNP
rs979938245 3731 dbSNP
rs1296972695 3743 dbSNP
rs1422511784 3747 dbSNP
rs1354017219 3755 dbSNP
rs2291858 3758 dbSNP
rs1433720266 3765 dbSNP
rs938632770 3767 dbSNP
rs956041235 3769 dbSNP
rs1173839058 3770 dbSNP
rs189729382 3772 dbSNP
rs913262809 3780 dbSNP
rs1427526293 3785 dbSNP
rs1021926024 3789 dbSNP
rs1194377864 3791 dbSNP
rs1478731014 3793 dbSNP
rs549539097 3800 dbSNP
rs1043162670 3802 dbSNP
rs900672392 3803 dbSNP
rs1281055710 3807 dbSNP
rs1194267808 3820 dbSNP
rs980068605 3821 dbSNP
rs1273149349 3830 dbSNP
rs370536868 3839 dbSNP
rs1051899645 3840 dbSNP
rs960100566 3843 dbSNP
rs890673948 3902 dbSNP
rs1415725121 3905 dbSNP
rs1342609690 3907 dbSNP
rs1335821774 3916 dbSNP
rs1235140088 3920 dbSNP
rs1389310328 3922 dbSNP
rs1395166002 3924 dbSNP
rs993297979 3932 dbSNP
rs918681715 3933 dbSNP
rs930102153 3941 dbSNP
rs747856389 3948 dbSNP
rs1164101980 3950 dbSNP
rs769562007 3960 dbSNP
rs1015656060 3966 dbSNP
rs1297456027 3967 dbSNP
rs1179997714 3968 dbSNP
rs1340705607 3970 dbSNP
rs1437401463 3976 dbSNP
rs896855306 3980 dbSNP
rs995246275 3985 dbSNP
rs180923015 3988 dbSNP
rs1273158156 3994 dbSNP
rs1234401397 4002 dbSNP
rs969799941 4009 dbSNP
rs1038709755 4010 dbSNP
rs1236440468 4012 dbSNP
rs900137954 4036 dbSNP
rs1220453798 4039 dbSNP
rs1244623511 4042 dbSNP
rs551912447 4048 dbSNP
rs1331472717 4052 dbSNP
rs979910318 4057 dbSNP
rs1448416010 4063 dbSNP
rs1391613415 4065 dbSNP
rs1325217708 4079 dbSNP
rs565539573 4081 dbSNP
rs141036197 4082 dbSNP
rs534764992 4088 dbSNP
rs146828132 4103 dbSNP
rs988769205 4112 dbSNP
rs781380134 4124 dbSNP
rs574623417 4125 dbSNP
rs1404557052 4130 dbSNP
rs1180717033 4134 dbSNP
rs1321768273 4140 dbSNP
rs1351862424 4141 dbSNP
rs1010476678 4143 dbSNP
rs1021496827 4148 dbSNP
rs947426363 4149 dbSNP
rs978740771 4151 dbSNP
rs1441681562 4152 dbSNP
rs1204872500 4153 dbSNP
rs921996409 4158 dbSNP
rs142081295 4169 dbSNP
rs1052350662 4170 dbSNP
rs145724494 4174 dbSNP
rs1231328289 4180 dbSNP
rs1301987633 4185 dbSNP
rs1437111327 4186 dbSNP
rs1351502613 4189 dbSNP
rs959991871 4198 dbSNP
rs1399944515 4208 dbSNP
rs940935880 4209 dbSNP
rs546000613 4210 dbSNP
rs776026342 4211 dbSNP
rs951537148 4219 dbSNP
rs984678667 4223 dbSNP
rs995129867 4226 dbSNP
rs1246944231 4232 dbSNP
rs201510830 4239 dbSNP
rs879692028 4239 dbSNP
rs905583443 4241 dbSNP
rs975637078 4251 dbSNP
rs1242647785 4255 dbSNP
rs1001316667 4256 dbSNP
rs1277336167 4260 dbSNP
rs1219251440 4261 dbSNP
rs1369067087 4262 dbSNP
rs1035915849 4268 dbSNP
rs1161278520 4274 dbSNP
rs1340956793 4280 dbSNP
rs922849885 4287 dbSNP
rs959939871 4298 dbSNP
rs1433129607 4301 dbSNP
rs1375023455 4304 dbSNP
rs1416286284 4307 dbSNP
rs1417461392 4315 dbSNP
rs932945308 4320 dbSNP
rs1051471349 4325 dbSNP
rs1265798356 4332 dbSNP
rs1186204572 4338 dbSNP
rs761057475 4339 dbSNP
rs1236582387 4341 dbSNP
rs1210347248 4342 dbSNP
rs1313508330 4348 dbSNP
rs891536120 4355 dbSNP
rs945839432 4359 dbSNP
rs546183537 4362 dbSNP
rs1437370492 4364 dbSNP
rs968624018 4366 dbSNP
rs1042857405 4374 dbSNP
rs559959119 4379 dbSNP
rs1303715502 4381 dbSNP
rs1450453859 4383 dbSNP
rs1001327284 4389 dbSNP
rs1034196521 4397 dbSNP
rs1466629013 4403 dbSNP
rs895773257 4404 dbSNP
rs1446221248 4405 dbSNP
rs921965310 4422 dbSNP
rs1286364826 4438 dbSNP
rs1414971605 4440 dbSNP
rs1182143419 4446 dbSNP
rs1336463162 4456 dbSNP
rs1230680975 4458 dbSNP
rs1233596509 4460 dbSNP
rs1267110398 4461 dbSNP
rs1197404400 4462 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gcUCACACUCUAGUGUGGAGGg 5'
            | ||  |  || ||||||| 
Target 5' ucACUGCAACCUC-CACCUCCc 3'
 		13 - 33
2 
miRNA  3' gcucacacucuagugUGGAGgg 5'
                         |:||:  
Target 5' -----------ugcgAUCUUgg 3'
 		1 - 11
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760616. RNA binding protein: AGO2. Condition:AGO-CLIP-PC3_A ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM4903830
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_b
Location of target site NM_015635 | 3UTR | CCCAGUUCAAGUGAUUCCCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_015635 | 3UTR | UUUUAUUUUAUUUUUUUGAGACAGAGUCUCACCCUGUUGCCCAGGCUGGAGUGCAAUGGUGCGAUCUUGGCUCACUGCAACCUCCACCUCCCAGUUCAAGUGAUUCCCCUGCCUCAGCCUCGCGAGUAGCUAGGACUACAGGCGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_015635 | 3UTR | AUUUUAUUUUAUUUUUUUGAGACAGAGUCUCACCCUGUUGCCCAGGCUGGAGUGCAAUGGUGCGAUCUUGGCUCACUGCAACCUCCACCUCCCAGUUCAAGUGAUUCCCCUGCCUCAGCCUCGCGAGUAGCUAGGACUACAGGCGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_015635 | 3UTR | UAUUUUAUUUUAUUUUUUUGAGACAGAGUCUCACCCUGUUGCCCAGGCUGGAGUGCAAUGGUGCGAUCUUGGCUCACUGCAACCUCCACCUCCCAGUUCAAGUGAUUCCCCUGCCUCAGCCUCGCGAGUAGCUAGGACUACAGGCGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_015635 | 3UTR | UUUAUUUUAUUUUAUUUUUUUGAGACAGAGUCUCACCCUGUUGCCCAGGCUGGAGUGCAAUGGUGCGAUCUUGGCUCACUGCAACCUCCACCUCCCAGUUCAAGUGAUUCCCCUGCCUCAGCCUCGCGAGUAGCUAGGACUACAGGCGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_015635 | 3UTR | UUUUAUUUUAUUUUAUUUUUUUGAGACAGAGUCUCACCCUGUUGCCCAGGCUGGAGUGCAAUGGUGCGAUCUUGGCUCACUGCAACCUCCACCUCCCAGUUCAAGUGAUUCCCCUGCCUCAGCCUCGCGAGUAGCUAGGACUACAGGCGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_015635 | 3UTR | UUAUUUUAUUUUAUUUUUUUGAGACAGAGUCUCACCCUGUUGCCCAGGCUGGAGUGCAAUGGUGCGAUCUUGGCUCACUGCAACCUCCACCUCCCAGUUCAAGUGAUUCCCCUGCCUCAGCCUCGCGAGUAGCUAGGACUACAGGCGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000470056.1 | 3UTR | UGCGAUCUUGGCUCACUGCAACCUCCACCUCCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
231 hsa-miR-3689d Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059166 TXNIP thioredoxin interacting protein 2 4
MIRT080699 KIAA1468 KIAA1468 2 2
MIRT218770 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT278059 KHNYN KH and NYN domain containing 2 2
MIRT345933 EIF4A1 eukaryotic translation initiation factor 4A1 2 2
MIRT366238 VMA21 VMA21, vacuolar ATPase assembly factor 2 2
MIRT449689 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 2 2
MIRT451149 C19orf53 chromosome 19 open reading frame 53 2 2
MIRT451266 NDUFA11 NADH:ubiquinone oxidoreductase subunit A11 2 2
MIRT451375 C19orf43 telomerase RNA component interacting RNase 2 2
MIRT451570 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451585 HIRIP3 HIRA interacting protein 3 2 2
MIRT451614 MEIS3P1 Meis homeobox 3 pseudogene 1 2 2
MIRT451763 ZNF611 zinc finger protein 611 2 6
MIRT452383 LY6E lymphocyte antigen 6 family member E 2 4
MIRT452573 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452735 PTGES3L prostaglandin E synthase 3 like 2 6
MIRT452867 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452975 CABP4 calcium binding protein 4 2 2
MIRT453215 CERS1 ceramide synthase 1 2 2
MIRT453259 PARP11 poly(ADP-ribose) polymerase family member 11 2 2
MIRT453449 GLG1 golgi glycoprotein 1 2 2
MIRT453479 PITPNM3 PITPNM family member 3 2 2
MIRT453663 CD207 CD207 molecule 2 6
MIRT453724 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 2 2
MIRT453760 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT454181 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 6
MIRT454330 PPARA peroxisome proliferator activated receptor alpha 2 2
MIRT454338 CDKL1 cyclin dependent kinase like 1 2 2
MIRT454427 GTF2F1 general transcription factor IIF subunit 1 2 2
MIRT454665 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454825 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT455130 TBC1D25 TBC1 domain family member 25 2 2
MIRT455166 SUV39H1 suppressor of variegation 3-9 homolog 1 2 2
MIRT455416 RXRB retinoid X receptor beta 2 2
MIRT455668 GLO1 glyoxalase I 2 2
MIRT455999 CYP2C19 cytochrome P450 family 2 subfamily C member 19 2 2
MIRT456446 TMEM81 transmembrane protein 81 2 2
MIRT456642 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT456728 TMEM239 transmembrane protein 239 2 2
MIRT457131 ASPH aspartate beta-hydroxylase 2 2
MIRT457157 MXRA7 matrix remodeling associated 7 2 2
MIRT457358 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT457458 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT457619 UPK3BL uroplakin 3B like 1 2 2
MIRT457692 ZNF587 zinc finger protein 587 2 2
MIRT457727 SMOX spermine oxidase 2 2
MIRT457788 VWA1 von Willebrand factor A domain containing 1 2 2
MIRT457875 THEM6 thioesterase superfamily member 6 2 4
MIRT457909 ZNF212 zinc finger protein 212 2 2
MIRT458395 ABCF1 ATP binding cassette subfamily F member 1 2 2
MIRT458496 MARVELD2 MARVEL domain containing 2 2 2
MIRT458544 CYP2B6 cytochrome P450 family 2 subfamily B member 6 2 2
MIRT458577 TCOF1 treacle ribosome biogenesis factor 1 2 2
MIRT458732 CES2 carboxylesterase 2 2 2
MIRT458814 ZNF843 zinc finger protein 843 2 2
MIRT458931 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT459341 ZNF17 zinc finger protein 17 2 2
MIRT459365 MPLKIP M-phase specific PLK1 interacting protein 2 6
MIRT459572 NLGN2 neuroligin 2 2 2
MIRT460015 DTX3L deltex E3 ubiquitin ligase 3L 2 4
MIRT460144 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT460653 IGFBP4 insulin like growth factor binding protein 4 2 2
MIRT460798 VPS33A VPS33A, CORVET/HOPS core subunit 2 2
MIRT461058 KCNK6 potassium two pore domain channel subfamily K member 6 2 4
MIRT461458 SLC19A3 solute carrier family 19 member 3 2 2
MIRT461572 SCO1 SCO1, cytochrome c oxidase assembly protein 2 4
MIRT461927 TNFSF14 TNF superfamily member 14 2 2
MIRT461953 C3 complement C3 2 2
MIRT462278 KRR1 KRR1, small subunit processome component homolog 2 2
MIRT462744 EFNB1 ephrin B1 2 2
MIRT463136 ZNF451 zinc finger protein 451 2 4
MIRT463566 ZBTB39 zinc finger and BTB domain containing 39 2 6
MIRT463866 WNT7B Wnt family member 7B 2 2
MIRT464326 UST uronyl 2-sulfotransferase 2 2
MIRT464796 UBE2F ubiquitin conjugating enzyme E2 F (putative) 2 2
MIRT465034 TTC39C tetratricopeptide repeat domain 39C 2 2
MIRT466207 TMED10 transmembrane p24 trafficking protein 10 2 2
MIRT467007 SSBP2 single stranded DNA binding protein 2 2 2
MIRT467029 SRSF1 serine and arginine rich splicing factor 1 2 4
MIRT468001 SKI SKI proto-oncogene 2 2
MIRT468031 SIKE1 suppressor of IKBKE 1 2 6
MIRT468575 SERBP1 SERPINE1 mRNA binding protein 1 2 6
MIRT468834 RRM2 ribonucleotide reductase regulatory subunit M2 2 2
MIRT468970 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT469450 REL REL proto-oncogene, NF-kB subunit 2 6
MIRT470888 PLXND1 plexin D1 2 2
MIRT470953 PKM pyruvate kinase, muscle 2 2
MIRT471828 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT472590 NACC1 nucleus accumbens associated 1 2 2
MIRT472805 MTMR12 myotubularin related protein 12 2 2
MIRT472818 MTMR10 myotubularin related protein 10 2 6
MIRT472914 MSN moesin 2 2
MIRT474558 KLHDC3 kelch domain containing 3 2 2
MIRT474716 KIF13A kinesin family member 13A 2 6
MIRT475279 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT475300 IFNLR1 interferon lambda receptor 1 2 2
MIRT475759 HDLBP high density lipoprotein binding protein 2 2
MIRT475786 HDGF heparin binding growth factor 2 2
MIRT475933 GXYLT2 glucoside xylosyltransferase 2 2 8
MIRT476212 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT476238 GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 2 4
MIRT476799 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT477988 DNAL1 dynein axonemal light chain 1 2 2
MIRT478317 DDN dendrin 2 2
MIRT479257 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT479344 CEP97 centrosomal protein 97 2 2
MIRT479522 CDCA4 cell division cycle associated 4 2 2
MIRT479906 CCDC117 coiled-coil domain containing 117 2 6
MIRT481147 AVL9 AVL9 cell migration associated 2 6
MIRT481735 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT482089 ALG8 ALG8, alpha-1,3-glucosyltransferase 2 2
MIRT482389 AEN apoptosis enhancing nuclease 2 2
MIRT483093 TFPI tissue factor pathway inhibitor 2 2
MIRT484246 ANK1 ankyrin 1 2 2
MIRT484342 EPN1 epsin 1 2 4
MIRT489141 C5orf38 chromosome 5 open reading frame 38 2 2
MIRT489163 MRPL12 mitochondrial ribosomal protein L12 2 4
MIRT489547 SOX11 SRY-box 11 2 4
MIRT489780 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT489799 KRT80 keratin 80 2 6
MIRT490535 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT492198 SOCS1 suppressor of cytokine signaling 1 2 2
MIRT492283 SHISA6 shisa family member 6 2 4
MIRT501059 SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 2 4
MIRT501094 SLC5A6 solute carrier family 5 member 6 2 4
MIRT503870 CBS cystathionine-beta-synthase 2 2
MIRT507981 BCL2L13 BCL2 like 13 2 4
MIRT508125 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT508205 SLC35E1 solute carrier family 35 member E1 2 2
MIRT508385 SPTBN2 spectrin beta, non-erythrocytic 2 2 4
MIRT510308 PDRG1 p53 and DNA damage regulated 1 2 2
MIRT510462 ZDHHC18 zinc finger DHHC-type containing 18 2 2
MIRT512227 ATXN3 ataxin 3 2 8
MIRT512665 STEAP3 STEAP3 metalloreductase 2 2
MIRT514184 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT515053 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515138 ZNF799 zinc finger protein 799 2 4
MIRT515452 ZNF747 zinc finger protein 747 2 2
MIRT515791 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT515905 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT516129 MRPS16 mitochondrial ribosomal protein S16 2 6
MIRT516679 ZNF860 zinc finger protein 860 2 4
MIRT516750 ZNF100 zinc finger protein 100 2 2
MIRT516971 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT517491 NPAP1 nuclear pore associated protein 1 2 2
MIRT517774 PROM2 prominin 2 2 2
MIRT517938 ZNF431 zinc finger protein 431 2 4
MIRT518386 ZNF250 zinc finger protein 250 2 2
MIRT520621 TMEM41B transmembrane protein 41B 2 2
MIRT521028 SLC30A5 solute carrier family 30 member 5 2 2
MIRT521454 RAD51 RAD51 recombinase 2 2
MIRT521564 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT521581 PTBP2 polypyrimidine tract binding protein 2 2 2
MIRT522263 NKRF NFKB repressing factor 2 2
MIRT522410 MXI1 MAX interactor 1, dimerization protein 2 2
MIRT522543 MED28 mediator complex subunit 28 2 6
MIRT522915 KCNE3 potassium voltage-gated channel subfamily E regulatory subunit 3 2 2
MIRT523029 IGF1 insulin like growth factor 1 2 2
MIRT523854 ESPL1 extra spindle pole bodies like 1, separase 2 4
MIRT524184 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524520 CDK19 cyclin dependent kinase 19 2 2
MIRT524674 C12orf5 TP53 induced glycolysis regulatory phosphatase 2 2
MIRT530257 ZNF620 zinc finger protein 620 2 2
MIRT540691 BMP3 bone morphogenetic protein 3 2 2
MIRT540976 C17orf85 nuclear cap binding subunit 3 2 2
MIRT545505 NAP1L1 nucleosome assembly protein 1 like 1 2 2
MIRT545631 GGCX gamma-glutamyl carboxylase 2 2
MIRT547358 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT550701 MPL MPL proto-oncogene, thrombopoietin receptor 2 4
MIRT550717 PMPCA peptidase, mitochondrial processing alpha subunit 2 4
MIRT551203 NCR3LG1 natural killer cell cytotoxicity receptor 3 ligand 1 2 2
MIRT553999 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 4
MIRT561081 LLPH LLP homolog, long-term synaptic facilitation 2 2
MIRT563523 TAF8 TATA-box binding protein associated factor 8 2 2
MIRT564463 SLC35E2 solute carrier family 35 member E2 2 2
MIRT565233 TRAF6 TNF receptor associated factor 6 2 2
MIRT566618 NKAP NFKB activating protein 2 2
MIRT569527 AP5Z1 adaptor related protein complex 5 zeta 1 subunit 2 2
MIRT569639 QPCT glutaminyl-peptide cyclotransferase 2 2
MIRT570253 SSPN sarcospan 2 2
MIRT570570 OTUD7B OTU deubiquitinase 7B 2 2
MIRT570621 MTF2 metal response element binding transcription factor 2 2 2
MIRT571098 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 2
MIRT575196 Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT575554 Cd99 CD99 antigen 2 2
MIRT575634 Gnl3l guanine nucleotide binding protein-like 3 (nucleolar)-like 2 2
MIRT608267 NOP14 NOP14 nucleolar protein 2 2
MIRT609314 FXYD6 FXYD domain containing ion transport regulator 6 2 2
MIRT627670 RPL28 ribosomal protein L28 2 2
MIRT631185 TSPAN14 tetraspanin 14 2 2
MIRT631964 YIPF5 Yip1 domain family member 5 2 2
MIRT632885 GINM1 glycoprotein integral membrane 1 2 2
MIRT642618 CDKN3 cyclin dependent kinase inhibitor 3 2 2
MIRT645609 TSPAN6 tetraspanin 6 2 2
MIRT662227 PGBD4 piggyBac transposable element derived 4 2 2
MIRT662329 MYLK3 myosin light chain kinase 3 2 2
MIRT662725 LRRC3C leucine rich repeat containing 3C 2 2
MIRT665520 USP14 ubiquitin specific peptidase 14 2 2
MIRT666634 RBMS2 RNA binding motif single stranded interacting protein 2 2 2
MIRT668969 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT670925 DESI1 desumoylating isopeptidase 1 2 2
MIRT673939 ZNF500 zinc finger protein 500 2 2
MIRT674675 PLCE1 phospholipase C epsilon 1 2 2
MIRT675230 MAK male germ cell associated kinase 2 2
MIRT680864 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT681047 ZDBF2 zinc finger DBF-type containing 2 2 2
MIRT681105 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT683553 HAVCR1 hepatitis A virus cellular receptor 1 2 2
MIRT684508 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT684812 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT685981 CCDC77 coiled-coil domain containing 77 2 2
MIRT686709 TBC1D19 TBC1 domain family member 19 2 2
MIRT686867 SLC25A32 solute carrier family 25 member 32 2 2
MIRT688908 C11orf84 chromosome 11 open reading frame 84 2 2
MIRT691208 KLHL30 kelch like family member 30 2 2
MIRT692298 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT694380 MTA1 metastasis associated 1 2 2
MIRT696497 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT700686 POLR3D RNA polymerase III subunit D 2 2
MIRT701088 PAPOLG poly(A) polymerase gamma 2 2
MIRT703373 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT706189 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT706648 SMIM19 small integral membrane protein 19 2 2
MIRT709466 KRTAP19-1 keratin associated protein 19-1 2 2
MIRT709699 DMWD DM1 locus, WD repeat containing 2 2
MIRT710693 LYRM4 LYR motif containing 4 2 2
MIRT713457 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT722409 RARS2 arginyl-tRNA synthetase 2, mitochondrial 2 2
MIRT725391 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT725548 DNMT3A DNA methyltransferase 3 alpha 2 2

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