pre-miRNA Information
pre-miRNA hsa-mir-6819   
Genomic Coordinates chr22: 36286847 - 36286907
Description Homo sapiens miR-6819 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6819-3p
Sequence 41| AAGCCUCUGUCCCCACCCCAG |61
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1279530967 2 dbSNP
rs967579979 3 dbSNP
rs776891214 4 dbSNP
rs771166635 8 dbSNP
rs747037324 9 dbSNP
rs879248090 11 dbSNP
rs1485325191 12 dbSNP
rs778157316 16 dbSNP
Putative Targets

Gene Information
Gene Symbol GABPB1   
Synonyms BABPB2, E4TF1, E4TF1-47, E4TF1-53, E4TF1B, GABPB, GABPB-1, GABPB2, NRF2B1, NRF2B2
Description GA binding protein transcription factor beta subunit 1
Transcript NM_005254   
Other Transcripts NM_002041 , NM_016654 , NM_016655 , NM_181427   
Expression
Putative miRNA Targets on GABPB1
3'UTR of GABPB1
(miRNA target sites are highlighted)
>GABPB1|NM_005254|3'UTR
   1 TTGAAATGAACATGTAGTTTGATTTTACTTTTGGTCAAGAAAGAATACAATCTTGAACTGTACACAACAAAGGTACAGCC
  81 ATGGGAATACAGAATGATAGAAGAGACTACAGATGGATAATTGGACTTAAGCCATGAGCTCTGAGTTCTTGTAACATAAA
 161 ACTTTACTTTAGAAGTTGTGAAATGTATTTAAAACTGAATTCTGTAAATAGTTTTTTTTTTTTTACAGTTCCAAATGAGT
 241 TGATAAAGATTGTTGAAGAGATCCAAAACCAGAATAAGCCACTGTTTTTGTGAATTCTTTTTGATTTTAGTACAAACCTT
 321 AATTTCTCAGAAACGGAACAGTTTTAAGGGTGATCGTTGTTGGTTAGGCCAAATGTTGTGTAATAATTATGGTGGACTGA
 401 TGCTGGAATTACTCCTGTAGGTATAAACCTCTGTATGAAGAGAAGATTTCTCCCAGGAAATCTTTGTACAGCTTTAAGTT
 481 GTGTCAGATTCTCTGAAAACATTTTTTAGAAAGCAAAATTTTTATATTTGTTCAATTTCAGCTATACCCAAGTAGATTTA
 561 CATGTATATGAAGCAAATATTTTTAAAAATTTCTGTTTGTACATATTCTGCATGTTTTATAATTTCAAAATGCATCACTT
 641 ACATAGGTATTTCTCCCACAGAAATGATGAAAGTGACCAGAAAAAAACAAAAACAAAACCCCTTTACTCTGTAGGTCATT
 721 GAAACGAAGTAAGCTGGCAGCTGGTTTTATTGGAATGACAGTGTTCTCGGAAGGAGCAGCCTACAAGATAACTTGAATTT
 801 GCCAATTCTGCAAAATCTGTGCTTTTTTGAAAATTTAAGAGTGGGGACGTGAAACTGTATTCTGTGCCTTCCATCATGAT
 881 TTCCACATGAAAGCACTTTAAGGCACTGATTTTAAGATAATGTTTTTGGAAAACCCAATGCATATGGGTTTCTGAAATAT
 961 TTTATGGACTTATTTCTCCCCAGGAAATGATTCTTACGGAAAAAAATTGCTTTTGTATGTAGAACAGGAACTTTTTGTAT
1041 TACAGTGATGCAATAGACATGTCTAATGTAACTTCTACTTTTCCTTTTGAAAGCTCAGTGTCTGTGCTATGACTTGCTCT
1121 CATCACAATATTGTTGAATTCCACAATGTATGGACATTAAACACTGGCAGACTGTTCACTTTTTCTTTTTTTTTTTTGGT
1201 AAAATATTACTTCAAACCCCTTTTTCTTGCTTTATTTTTCAGTGTTTTATTGCTTTATGAACTGTTTAACCCTGAAATCC
1281 CTCTAGGTTATCTATACTGTATAAAAAAGCAATTACCCTTAAAACTGTACTCTGGCCTACTTTTCTATTTTGCAATTAAA
1361 TATCTTTTTCACATATGTTCATTGTAGACTTATGTTTTTATCACATCTTATTAACACATTAAAAATGTTATCCTACTGCA
1441 AAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaccccACC-CCUGUCUCCGAa 5'
                ||| |||| || ||| 
Target 5' taattaTGGTGGACTGATGCTg 3'
384 - 405 103.00 -13.40
2
miRNA  3' gaccccaccCCUGUCUCCGAa 5'
                   | |:| :||:| 
Target 5' aaacccaatGCATATGGGTTt 3'
931 - 951 84.00 -7.20
3
miRNA  3' gaccccaccccugUCUCcgaa 5'
                       ||||    
Target 5' ttttgaaaatttaAGAGtggg 3'
825 - 845 80.00 -8.07
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30497479 3 COSMIC
COSN30481447 28 COSMIC
COSN30481445 29 COSMIC
COSN31507095 60 COSMIC
COSN31500888 67 COSMIC
COSN1177610 78 COSMIC
COSN31587252 112 COSMIC
COSN30172433 180 COSMIC
COSN30127989 196 COSMIC
COSN29237753 208 COSMIC
COSN27376653 211 COSMIC
COSN27253606 212 COSMIC
COSN6275022 252 COSMIC
COSN31584934 260 COSMIC
COSN31535951 297 COSMIC
COSN30544261 514 COSMIC
COSN23292422 627 COSMIC
COSN8815069 645 COSMIC
COSN30172173 680 COSMIC
COSN8389436 702 COSMIC
COSN31610749 847 COSMIC
COSN7047530 871 COSMIC
COSN31544552 983 COSMIC
COSN27133787 997 COSMIC
COSN17182256 1023 COSMIC
COSN26304274 1046 COSMIC
COSN18923707 1186 COSMIC
COSN24476219 1242 COSMIC
COSN8746102 1317 COSMIC
COSN26148490 1393 COSMIC
COSN1678505 1976 COSMIC
COSN9625963 2256 COSMIC
COSN21994338 2335 COSMIC
COSN1177609 2358 COSMIC
COSN8746101 2970 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs373212408 10 dbSNP
rs1171144376 12 dbSNP
rs1169781421 13 dbSNP
rs780283674 22 dbSNP
rs758576855 26 dbSNP
rs550725924 32 dbSNP
rs1431347517 33 dbSNP
rs1000936559 36 dbSNP
rs1472198078 37 dbSNP
rs1388234706 45 dbSNP
rs755692449 45 dbSNP
rs1211575524 46 dbSNP
rs1421481322 49 dbSNP
rs151267053 50 dbSNP
rs567261081 57 dbSNP
rs1229547339 62 dbSNP
rs1022259479 64 dbSNP
rs1318125067 65 dbSNP
rs1010361811 68 dbSNP
rs987933958 70 dbSNP
rs956676941 74 dbSNP
rs1489675306 82 dbSNP
rs1192099838 85 dbSNP
rs891939010 95 dbSNP
rs1253261921 99 dbSNP
rs548730448 106 dbSNP
rs1191251916 107 dbSNP
rs1002938887 115 dbSNP
rs527490220 119 dbSNP
rs905943866 126 dbSNP
rs192568438 133 dbSNP
rs1158306174 134 dbSNP
rs1301046135 136 dbSNP
rs1044438119 151 dbSNP
rs1326311161 154 dbSNP
rs1225632788 156 dbSNP
rs931274868 161 dbSNP
rs1311632251 162 dbSNP
rs1223227642 172 dbSNP
rs1374165390 172 dbSNP
rs544721048 178 dbSNP
rs1305536345 185 dbSNP
rs919857553 189 dbSNP
rs1036927943 190 dbSNP
rs1323975206 197 dbSNP
rs969170391 204 dbSNP
rs939848930 210 dbSNP
rs78369321 211 dbSNP
rs1349521142 212 dbSNP
rs77360908 212 dbSNP
rs1234194069 216 dbSNP
rs1013500067 225 dbSNP
rs896514816 225 dbSNP
rs1324402057 229 dbSNP
rs1405766955 231 dbSNP
rs1407174976 237 dbSNP
rs1165471556 246 dbSNP
rs531130744 263 dbSNP
rs1015320854 280 dbSNP
rs1459625137 285 dbSNP
rs1333622230 299 dbSNP
rs1355297061 300 dbSNP
rs912429263 310 dbSNP
rs113590436 314 dbSNP
rs953814322 317 dbSNP
rs1296498975 318 dbSNP
rs1382015017 332 dbSNP
rs1159127966 334 dbSNP
rs921004355 335 dbSNP
rs748042348 339 dbSNP
rs979127687 354 dbSNP
rs887867760 355 dbSNP
rs1049096400 356 dbSNP
rs1438027696 363 dbSNP
rs968077019 369 dbSNP
rs28709839 371 dbSNP
rs1230678434 372 dbSNP
rs1010413894 377 dbSNP
rs754459486 378 dbSNP
rs1197731336 383 dbSNP
rs1035861357 389 dbSNP
rs1488323869 394 dbSNP
rs1416992149 405 dbSNP
rs1040636231 412 dbSNP
rs1169383139 412 dbSNP
rs1420552971 423 dbSNP
rs1002990961 428 dbSNP
rs1246960906 432 dbSNP
rs1360952052 435 dbSNP
rs944937535 438 dbSNP
rs1312806039 445 dbSNP
rs1354065341 447 dbSNP
rs1223252559 450 dbSNP
rs1402263899 452 dbSNP
rs144737842 454 dbSNP
rs988223338 455 dbSNP
rs1050571 460 dbSNP
rs1270381250 463 dbSNP
rs925024486 485 dbSNP
rs1210931310 489 dbSNP
rs1256746642 500 dbSNP
rs566626070 508 dbSNP
rs1484638246 514 dbSNP
rs866649435 515 dbSNP
rs186979585 521 dbSNP
rs1195108536 524 dbSNP
rs1331147274 528 dbSNP
rs979172644 529 dbSNP
rs1475241500 535 dbSNP
rs1166383124 543 dbSNP
rs1397043788 544 dbSNP
rs995540048 562 dbSNP
rs1218461457 566 dbSNP
rs1367980743 569 dbSNP
rs1275715262 574 dbSNP
rs1438836905 579 dbSNP
rs1173028366 580 dbSNP
rs1386635429 584 dbSNP
rs969243054 585 dbSNP
rs540800022 589 dbSNP
rs1319464805 595 dbSNP
rs992099472 603 dbSNP
rs1428981725 619 dbSNP
rs960921116 632 dbSNP
rs1037022256 638 dbSNP
rs1234447531 639 dbSNP
rs1278951756 641 dbSNP
rs760775212 642 dbSNP
rs1345723081 657 dbSNP
rs1206809314 666 dbSNP
rs939942667 681 dbSNP
rs1284795868 682 dbSNP
rs1446215121 683 dbSNP
rs573490838 687 dbSNP
rs1255147043 693 dbSNP
rs1454854057 697 dbSNP
rs1432993630 699 dbSNP
rs1005296016 703 dbSNP
rs67022145 706 dbSNP
rs1471169345 712 dbSNP
rs891045465 718 dbSNP
rs899786438 718 dbSNP
rs1384821881 721 dbSNP
rs900705272 725 dbSNP
rs754845765 726 dbSNP
rs1208810797 727 dbSNP
rs142322709 731 dbSNP
rs1441173333 735 dbSNP
rs1261200372 739 dbSNP
rs921024118 742 dbSNP
rs766747976 752 dbSNP
rs866764488 753 dbSNP
rs758548051 762 dbSNP
rs1280094224 766 dbSNP
rs12470 768 dbSNP
rs946414926 769 dbSNP
rs892048904 778 dbSNP
rs1203209775 783 dbSNP
rs12923 793 dbSNP
rs1303131856 796 dbSNP
rs935029178 801 dbSNP
rs1221212937 803 dbSNP
rs553422490 804 dbSNP
rs1363302992 817 dbSNP
rs575692697 819 dbSNP
rs183789051 835 dbSNP
rs1251304779 838 dbSNP
rs979203732 843 dbSNP
rs947767090 846 dbSNP
rs535493649 848 dbSNP
rs1469028537 849 dbSNP
rs992410144 859 dbSNP
rs567179304 864 dbSNP
rs1465956123 878 dbSNP
rs1360164490 887 dbSNP
rs1388076279 895 dbSNP
rs1392645084 898 dbSNP
rs970607500 906 dbSNP
rs1328918886 918 dbSNP
rs1178703566 920 dbSNP
rs907823776 921 dbSNP
rs1389196588 922 dbSNP
rs1335244316 926 dbSNP
rs1023062434 927 dbSNP
rs1232415108 931 dbSNP
rs996025659 937 dbSNP
rs898562647 938 dbSNP
rs1271530653 939 dbSNP
rs1015641737 944 dbSNP
rs1004206482 966 dbSNP
rs1196499953 970 dbSNP
rs1188746803 972 dbSNP
rs891055369 986 dbSNP
rs776949812 987 dbSNP
rs1240690975 989 dbSNP
rs1050959403 997 dbSNP
rs548888660 998 dbSNP
rs1475103274 1006 dbSNP
rs1163160949 1008 dbSNP
rs1027595766 1010 dbSNP
rs762311584 1014 dbSNP
rs1168056073 1015 dbSNP
rs1341148373 1021 dbSNP
rs1407383136 1037 dbSNP
rs996112365 1043 dbSNP
rs899634619 1051 dbSNP
rs147669065 1053 dbSNP
rs1413994124 1061 dbSNP
rs1310275210 1066 dbSNP
rs754332012 1075 dbSNP
rs145395857 1077 dbSNP
rs987777201 1078 dbSNP
rs1250911901 1087 dbSNP
rs1337531514 1088 dbSNP
rs761072749 1096 dbSNP
rs1009480840 1098 dbSNP
rs1258853935 1109 dbSNP
rs891959772 1113 dbSNP
rs1186301612 1118 dbSNP
rs938983496 1119 dbSNP
rs1310643968 1136 dbSNP
rs191185373 1143 dbSNP
rs1380530392 1146 dbSNP
rs1427285861 1147 dbSNP
rs565867616 1150 dbSNP
rs1305064680 1152 dbSNP
rs1376041173 1155 dbSNP
rs533043607 1168 dbSNP
rs1408409131 1178 dbSNP
rs1370315132 1179 dbSNP
rs1168878095 1185 dbSNP
rs1300926212 1191 dbSNP
rs1431248383 1191 dbSNP
rs982072489 1196 dbSNP
rs74502055 1197 dbSNP
rs1382506362 1198 dbSNP
rs200648397 1198 dbSNP
rs540068723 1198 dbSNP
rs57569624 1198 dbSNP
rs1398968494 1199 dbSNP
rs1347874869 1203 dbSNP
rs773957758 1209 dbSNP
rs1423822646 1213 dbSNP
rs1486416244 1215 dbSNP
rs770633675 1217 dbSNP
rs1260670172 1221 dbSNP
rs1258219751 1226 dbSNP
rs1175365404 1229 dbSNP
rs1482637217 1230 dbSNP
rs1252236931 1232 dbSNP
rs1206223682 1234 dbSNP
rs1344595792 1249 dbSNP
rs1023579134 1250 dbSNP
rs1802662 1253 dbSNP
rs1173869595 1262 dbSNP
rs1263833473 1262 dbSNP
rs1346849347 1263 dbSNP
rs1244191494 1264 dbSNP
rs1043430828 1281 dbSNP
rs1288046577 1309 dbSNP
rs1315493726 1312 dbSNP
rs1386777316 1329 dbSNP
rs1443370392 1330 dbSNP
rs1227060974 1336 dbSNP
rs1304330707 1337 dbSNP
rs1350323236 1352 dbSNP
rs1217509221 1356 dbSNP
rs1309002610 1362 dbSNP
rs974264731 1363 dbSNP
rs1215577970 1370 dbSNP
rs1318024508 1370 dbSNP
rs148583916 1375 dbSNP
rs1015653243 1376 dbSNP
rs1292540873 1378 dbSNP
rs1215193373 1381 dbSNP
rs1253164943 1392 dbSNP
rs1056214486 1409 dbSNP
rs1188895088 1414 dbSNP
rs1296692042 1416 dbSNP
rs1457989785 1417 dbSNP
rs550503232 1427 dbSNP
rs1410128957 1444 dbSNP
rs1419569630 1446 dbSNP
rs1158188223 1448 dbSNP
rs1409468050 1451 dbSNP
rs535315074 1454 dbSNP
rs1369675292 1459 dbSNP
rs939216397 1465 dbSNP
rs1156912274 1468 dbSNP
rs972510529 1471 dbSNP
rs1434463330 1476 dbSNP
rs3784296 1480 dbSNP
rs1412515884 1500 dbSNP
rs1184083084 1501 dbSNP
rs1223705597 1503 dbSNP
rs983799608 1506 dbSNP
rs1337408489 1511 dbSNP
rs562333395 1530 dbSNP
rs1218792638 1533 dbSNP
rs1234110541 1541 dbSNP
rs1209442959 1543 dbSNP
rs1488871264 1556 dbSNP
rs974721282 1557 dbSNP
rs1476078965 1559 dbSNP
rs1165352415 1566 dbSNP
rs964641207 1569 dbSNP
rs1403813123 1570 dbSNP
rs775128627 1574 dbSNP
rs1355202480 1576 dbSNP
rs1029595886 1581 dbSNP
rs997193751 1585 dbSNP
rs540912255 1593 dbSNP
rs899728753 1600 dbSNP
rs1357857467 1609 dbSNP
rs1415832331 1614 dbSNP
rs1008973386 1621 dbSNP
rs1043988847 1628 dbSNP
rs1230657834 1646 dbSNP
rs1355287965 1652 dbSNP
rs956432593 1653 dbSNP
rs879774089 1657 dbSNP
rs72738903 1664 dbSNP
rs1300229606 1678 dbSNP
rs904789728 1679 dbSNP
rs1486594185 1682 dbSNP
rs1386964209 1686 dbSNP
rs564399788 1689 dbSNP
rs1188478979 1691 dbSNP
rs1236670304 1698 dbSNP
rs1471656650 1710 dbSNP
rs1188513278 1714 dbSNP
rs1044629605 1728 dbSNP
rs1429209027 1730 dbSNP
rs1011959269 1731 dbSNP
rs1377836366 1745 dbSNP
rs1317945087 1749 dbSNP
rs1456184272 1756 dbSNP
rs894805531 1764 dbSNP
rs1389324395 1768 dbSNP
rs564664798 1770 dbSNP
rs1271592322 1791 dbSNP
rs1476944947 1791 dbSNP
rs3985829 1794 dbSNP
rs748073828 1795 dbSNP
rs575650767 1809 dbSNP
rs28668885 1810 dbSNP
rs949027621 1813 dbSNP
rs781164291 1816 dbSNP
rs1277751345 1819 dbSNP
rs920512954 1827 dbSNP
rs1217614950 1833 dbSNP
rs1242961601 1838 dbSNP
rs1464469505 1840 dbSNP
rs974626750 1842 dbSNP
rs1396951825 1845 dbSNP
rs916156681 1857 dbSNP
rs943406651 1859 dbSNP
rs911883771 1861 dbSNP
rs1402859134 1868 dbSNP
rs58917796 1869 dbSNP
rs778751856 1869 dbSNP
rs974653952 1870 dbSNP
rs956167435 1872 dbSNP
rs535814706 1883 dbSNP
rs1433889552 1884 dbSNP
rs1343366612 1887 dbSNP
rs1294878734 1894 dbSNP
rs1255769778 1895 dbSNP
rs1233598526 1897 dbSNP
rs1372547809 1912 dbSNP
rs1234335830 1915 dbSNP
rs1032144570 1920 dbSNP
rs1332478766 1921 dbSNP
rs978928734 1929 dbSNP
rs908645525 1940 dbSNP
rs1284684093 1950 dbSNP
rs1464660829 1956 dbSNP
rs982833291 1961 dbSNP
rs955426881 1963 dbSNP
rs968871969 1970 dbSNP
rs1468988530 1973 dbSNP
rs1198224407 1984 dbSNP
rs1433738337 1992 dbSNP
rs1030097793 1994 dbSNP
rs746451377 1997 dbSNP
rs1159568123 2003 dbSNP
rs1411709784 2004 dbSNP
rs777286534 2005 dbSNP
rs964315561 2006 dbSNP
rs1412683695 2009 dbSNP
rs1322269576 2011 dbSNP
rs1401301425 2017 dbSNP
rs1172958203 2024 dbSNP
rs1022175746 2030 dbSNP
rs1011177151 2036 dbSNP
rs1280008183 2038 dbSNP
rs1328229958 2039 dbSNP
rs952321663 2055 dbSNP
rs892271621 2056 dbSNP
rs1226301480 2066 dbSNP
rs1186857266 2074 dbSNP
rs201450514 2078 dbSNP
rs138812811 2083 dbSNP
rs376816694 2083 dbSNP
rs1248692927 2084 dbSNP
rs574511086 2095 dbSNP
rs1265342726 2103 dbSNP
rs201785258 2120 dbSNP
rs36123768 2122 dbSNP
rs1196041895 2123 dbSNP
rs886200328 2130 dbSNP
rs1047892564 2134 dbSNP
rs1471829639 2138 dbSNP
rs1167517563 2143 dbSNP
rs1003272362 2149 dbSNP
rs1419622034 2154 dbSNP
rs781044253 2174 dbSNP
rs906290788 2177 dbSNP
rs930515624 2179 dbSNP
rs1201416157 2184 dbSNP
rs1162186238 2189 dbSNP
rs28531946 2192 dbSNP
rs566476239 2193 dbSNP
rs1308590047 2194 dbSNP
rs1349743196 2197 dbSNP
rs535663772 2199 dbSNP
rs916150780 2200 dbSNP
rs943270938 2212 dbSNP
rs1356403464 2213 dbSNP
rs1038593409 2227 dbSNP
rs551546069 2235 dbSNP
rs539259662 2245 dbSNP
rs941520574 2246 dbSNP
rs568905386 2248 dbSNP
rs1263839366 2269 dbSNP
rs35612967 2280 dbSNP
rs759535035 2280 dbSNP
rs780412031 2281 dbSNP
rs187881858 2283 dbSNP
rs529033045 2285 dbSNP
rs924758951 2294 dbSNP
rs978833620 2304 dbSNP
rs1457549084 2311 dbSNP
rs561644433 2321 dbSNP
rs1339808668 2325 dbSNP
rs546662611 2333 dbSNP
rs922679490 2334 dbSNP
rs1186407065 2335 dbSNP
rs1366310547 2346 dbSNP
rs1463088592 2348 dbSNP
rs991634408 2354 dbSNP
rs758638614 2356 dbSNP
rs1369947951 2357 dbSNP
rs1427730274 2364 dbSNP
rs975824041 2365 dbSNP
rs964057443 2370 dbSNP
rs16963563 2373 dbSNP
rs750612699 2377 dbSNP
rs1368449562 2383 dbSNP
rs183102405 2396 dbSNP
rs1010808223 2397 dbSNP
rs1296956724 2401 dbSNP
rs1429346286 2401 dbSNP
rs1213656226 2402 dbSNP
rs1281586326 2405 dbSNP
rs886099826 2406 dbSNP
rs1199043746 2407 dbSNP
rs747874971 2409 dbSNP
rs1429923750 2415 dbSNP
rs1169740943 2428 dbSNP
rs1188707495 2428 dbSNP
rs1389029300 2429 dbSNP
rs1447062188 2431 dbSNP
rs564633239 2432 dbSNP
rs1237430246 2460 dbSNP
rs149818713 2480 dbSNP
rs956605475 2487 dbSNP
rs1030833227 2494 dbSNP
rs1300837040 2495 dbSNP
rs1387497940 2499 dbSNP
rs779009300 2503 dbSNP
rs1320069760 2510 dbSNP
rs139902113 2512 dbSNP
rs563771466 2513 dbSNP
rs1302611591 2516 dbSNP
rs541944749 2529 dbSNP
rs1262851090 2533 dbSNP
rs1023343747 2534 dbSNP
rs1208973116 2538 dbSNP
rs375786438 2539 dbSNP
rs898802827 2549 dbSNP
rs1194938754 2553 dbSNP
rs1037758578 2555 dbSNP
rs757305612 2564 dbSNP
rs1173760182 2568 dbSNP
rs552947209 2572 dbSNP
rs1274594426 2576 dbSNP
rs887352668 2577 dbSNP
rs1052113009 2578 dbSNP
rs1386663981 2581 dbSNP
rs1443259993 2585 dbSNP
rs1294155731 2589 dbSNP
rs934713233 2591 dbSNP
rs1226149698 2592 dbSNP
rs1309705447 2598 dbSNP
rs1330283345 2599 dbSNP
rs1228119686 2600 dbSNP
rs1267159324 2602 dbSNP
rs1047270390 2604 dbSNP
rs924594188 2613 dbSNP
rs934109446 2621 dbSNP
rs1487837961 2623 dbSNP
rs1189402791 2624 dbSNP
rs1252523995 2627 dbSNP
rs922699132 2631 dbSNP
rs374539879 2632 dbSNP
rs1410084249 2633 dbSNP
rs942766668 2634 dbSNP
rs915268623 2635 dbSNP
rs989439554 2637 dbSNP
rs1307168134 2638 dbSNP
rs956656734 2644 dbSNP
rs16963562 2653 dbSNP
rs981912479 2654 dbSNP
rs970562537 2663 dbSNP
rs1023817973 2669 dbSNP
rs574959403 2673 dbSNP
rs17416784 2674 dbSNP
rs557787371 2675 dbSNP
rs1348307726 2682 dbSNP
rs1164405960 2687 dbSNP
rs1290062005 2698 dbSNP
rs1320622859 2703 dbSNP
rs1218678483 2704 dbSNP
rs1276746846 2707 dbSNP
rs1476464491 2708 dbSNP
rs117896281 2712 dbSNP
rs191965990 2713 dbSNP
rs1181913801 2715 dbSNP
rs1182696275 2716 dbSNP
rs1025919362 2738 dbSNP
rs112625499 2741 dbSNP
rs1422189544 2742 dbSNP
rs887360798 2743 dbSNP
rs535001953 2754 dbSNP
rs1371792188 2755 dbSNP
rs1429662004 2763 dbSNP
rs1047322717 2767 dbSNP
rs1306652352 2768 dbSNP
rs1377653292 2772 dbSNP
rs1284444759 2773 dbSNP
rs1377958682 2780 dbSNP
rs771361554 2782 dbSNP
rs963112350 2786 dbSNP
rs1342854892 2787 dbSNP
rs1017274364 2804 dbSNP
rs557147769 2807 dbSNP
rs1210536034 2811 dbSNP
rs370335720 2812 dbSNP
rs535539456 2813 dbSNP
rs1234277913 2826 dbSNP
rs749628247 2826 dbSNP
rs1218900304 2837 dbSNP
rs1482398508 2838 dbSNP
rs1190670262 2844 dbSNP
rs568198778 2844 dbSNP
rs1448865897 2845 dbSNP
rs577357343 2846 dbSNP
rs1397372470 2858 dbSNP
rs1289967562 2862 dbSNP
rs1415450252 2864 dbSNP
rs1333886008 2868 dbSNP
rs1215550952 2871 dbSNP
rs1327015984 2874 dbSNP
rs753115831 2877 dbSNP
rs890277423 2887 dbSNP
rs1040258395 2888 dbSNP
rs1051714777 2913 dbSNP
rs1295382491 2927 dbSNP
rs1347001801 2932 dbSNP
rs558994453 2951 dbSNP
rs1277644195 2953 dbSNP
rs1440427951 2961 dbSNP
rs915304805 2967 dbSNP
rs989449554 2968 dbSNP
rs755425417 2972 dbSNP
rs1210822480 2980 dbSNP
rs935292807 2991 dbSNP
rs1375222732 2995 dbSNP
rs1043090519 2996 dbSNP
rs947334141 2998 dbSNP
rs1478639818 3000 dbSNP
rs546576929 3008 dbSNP
rs188185401 3012 dbSNP
rs1423522349 3014 dbSNP
rs868334043 3016 dbSNP
rs1324295551 3019 dbSNP
rs938898912 3024 dbSNP
rs1317956128 3026 dbSNP
rs1332823175 3033 dbSNP
rs767879330 3048 dbSNP
rs2114447 3053 dbSNP
rs1342645192 3054 dbSNP
rs991055455 3058 dbSNP
rs983080483 3060 dbSNP
rs951737082 3061 dbSNP
rs1387128641 3065 dbSNP
rs963192083 3067 dbSNP
rs1292097455 3076 dbSNP
rs1452192874 3079 dbSNP
rs527834905 3080 dbSNP
rs1473151468 3092 dbSNP
rs962975996 3096 dbSNP
rs1017342444 3098 dbSNP
rs1412343765 3102 dbSNP
rs1456369125 3103 dbSNP
rs1007707865 3105 dbSNP
rs1392271776 3110 dbSNP
rs1477486241 3111 dbSNP
rs1004572155 3114 dbSNP
rs1322833181 3123 dbSNP
rs1030596700 3126 dbSNP
rs1463133333 3132 dbSNP
rs1411470655 3134 dbSNP
rs1288742586 3142 dbSNP
rs1350163040 3147 dbSNP
rs552612599 3149 dbSNP
rs1226810296 3152 dbSNP
rs1267386459 3157 dbSNP
rs1357171315 3169 dbSNP
rs183302516 3178 dbSNP
rs1209239261 3182 dbSNP
rs34773087 3189 dbSNP
rs1029992342 3190 dbSNP
rs903107395 3193 dbSNP
rs1276224573 3195 dbSNP
rs1218366734 3198 dbSNP
rs191340075 3204 dbSNP
rs998471027 3205 dbSNP
rs1206393413 3206 dbSNP
rs1251567269 3208 dbSNP
rs1011620816 3213 dbSNP
rs769329336 3216 dbSNP
rs901419407 3224 dbSNP
rs1039907566 3226 dbSNP
rs563710856 3230 dbSNP
rs893894052 3239 dbSNP
rs1053774571 3240 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gaccccaccccugUCUCCGAa 5'
                       ||||||| 
Target 5' ucccagcacuuugAGAGGCUg 3'
2 - 22
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000368918.3 | 3UTR | AUCCCAGCACUUUGAGAGGCUGAGGUGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
108 hsa-miR-6819-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT358318 PANK3 pantothenate kinase 3 2 2
MIRT454719 UBQLNL ubiquilin like 2 2
MIRT471362 PEG10 paternally expressed 10 2 2
MIRT478101 DLG5 discs large MAGUK scaffold protein 5 2 4
MIRT495554 GOLGA6L4 golgin A6 family-like 4 2 2
MIRT495587 GOLGA6L10 golgin A6 family-like 10 2 2
MIRT508315 RPL18 ribosomal protein L18 2 4
MIRT529183 ADAM33 ADAM metallopeptidase domain 33 2 2
MIRT532035 FHDC1 FH2 domain containing 1 2 2
MIRT545131 ANXA5 annexin A5 2 2
MIRT567288 HNRNPL heterogeneous nuclear ribonucleoprotein L 2 2
MIRT568094 CEBPG CCAAT/enhancer binding protein gamma 2 2
MIRT573291 DLX4 distal-less homeobox 4 2 2
MIRT575169 Fam120c family with sequence similarity 120, member C 2 2
MIRT609495 DNASE1L3 deoxyribonuclease 1 like 3 2 2
MIRT611264 EHD3 EH domain containing 3 2 2
MIRT613580 POC5 POC5 centriolar protein 2 2
MIRT616520 C9orf170 chromosome 9 open reading frame 170 2 2
MIRT617098 ZNF667 zinc finger protein 667 2 2
MIRT618268 DDX51 DEAD-box helicase 51 2 2
MIRT618294 ZNF682 zinc finger protein 682 2 2
MIRT618617 SHOX short stature homeobox 2 2
MIRT619741 SRFBP1 serum response factor binding protein 1 2 2
MIRT619784 NRIP2 nuclear receptor interacting protein 2 2 2
MIRT621119 SP110 SP110 nuclear body protein 2 2
MIRT622530 RAD51 RAD51 recombinase 2 2
MIRT623088 NME6 NME/NM23 nucleoside diphosphate kinase 6 2 2
MIRT623938 FKBP14 FK506 binding protein 14 2 2
MIRT624389 CD84 CD84 molecule 2 2
MIRT624860 ABI2 abl interactor 2 2 2
MIRT628752 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT632243 VTA1 vesicle trafficking 1 2 2
MIRT632987 E2F2 E2F transcription factor 2 2 2
MIRT633695 RBM43 RNA binding motif protein 43 2 2
MIRT633766 CENPBD1 CENPB DNA-binding domain containing 1 2 2
MIRT633808 ZNF91 zinc finger protein 91 2 2
MIRT638914 CBLN2 cerebellin 2 precursor 2 2
MIRT641298 SLAMF1 signaling lymphocytic activation molecule family member 1 2 2
MIRT642123 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT642179 HEBP2 heme binding protein 2 2 2
MIRT642617 CDKN3 cyclin dependent kinase inhibitor 3 2 2
MIRT643325 TMEM151B transmembrane protein 151B 2 2
MIRT644534 TMEM134 transmembrane protein 134 2 2
MIRT645820 OMA1 OMA1 zinc metallopeptidase 2 2
MIRT646093 MGST3 microsomal glutathione S-transferase 3 2 2
MIRT646861 SLC35E4 solute carrier family 35 member E4 2 2
MIRT647466 DZIP1L DAZ interacting zinc finger protein 1 like 2 2
MIRT647702 NADSYN1 NAD synthetase 1 2 2
MIRT648082 ZMIZ2 zinc finger MIZ-type containing 2 2 2
MIRT648547 TMEM169 transmembrane protein 169 2 2
MIRT648690 AP1M1 adaptor related protein complex 1 mu 1 subunit 2 2
MIRT649747 GNB5 G protein subunit beta 5 2 2
MIRT650154 ZNF426 zinc finger protein 426 2 2
MIRT650450 CPXM2 carboxypeptidase X, M14 family member 2 2 2
MIRT650943 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT651544 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT652304 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT652890 SYVN1 synoviolin 1 2 2
MIRT654222 RNF19B ring finger protein 19B 2 2
MIRT654676 PSMB5 proteasome subunit beta 5 2 2
MIRT658249 FAXC failed axon connections homolog 2 2
MIRT658363 FAM65B RHO family interacting cell polarization regulator 2 2 2
MIRT659622 CELF1 CUGBP Elav-like family member 1 2 2
MIRT660171 BNIP3L BCL2 interacting protein 3 like 2 2
MIRT660634 ANKRD52 ankyrin repeat domain 52 2 2
MIRT662428 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT662984 PAK3 p21 (RAC1) activated kinase 3 2 2
MIRT663939 ZNF554 zinc finger protein 554 2 2
MIRT666960 PKHD1 PKHD1, fibrocystin/polyductin 2 2
MIRT667945 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT668847 CYCS cytochrome c, somatic 2 2
MIRT671792 RGS17 regulator of G protein signaling 17 2 2
MIRT672382 RPL37 ribosomal protein L37 2 2
MIRT673516 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 4
MIRT674716 FAM73A mitoguardin 1 2 2
MIRT676352 KLF8 Kruppel like factor 8 2 2
MIRT677820 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT678440 PDE4C phosphodiesterase 4C 2 2
MIRT678499 ARHGEF39 Rho guanine nucleotide exchange factor 39 2 2
MIRT679243 LRP10 LDL receptor related protein 10 2 2
MIRT693607 SLC39A1 solute carrier family 39 member 1 2 2
MIRT695927 ZNF174 zinc finger protein 174 2 2
MIRT697987 TSPAN6 tetraspanin 6 2 2
MIRT700821 PHLDA2 pleckstrin homology like domain family A member 2 2 2
MIRT701350 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT702348 KLHL7 kelch like family member 7 2 2
MIRT703387 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT703883 ERBB2IP erbb2 interacting protein 2 2
MIRT708237 PPP1R26 protein phosphatase 1 regulatory subunit 26 2 2
MIRT708629 NUDT18 nudix hydrolase 18 2 2
MIRT708990 CABP4 calcium binding protein 4 2 2
MIRT709804 FOXE1 forkhead box E1 2 2
MIRT710203 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT710248 VAMP1 vesicle associated membrane protein 1 2 2
MIRT710281 FGF1 fibroblast growth factor 1 2 2
MIRT712992 IRGQ immunity related GTPase Q 2 2
MIRT713887 MOB3A MOB kinase activator 3A 2 2
MIRT715600 ADAM17 ADAM metallopeptidase domain 17 2 2
MIRT715639 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT715686 FRK fyn related Src family tyrosine kinase 2 2
MIRT717053 WIZ widely interspaced zinc finger motifs 2 2
MIRT717611 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT721539 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT722096 SUSD1 sushi domain containing 1 2 2
MIRT722435 HRNR hornerin 2 2
MIRT722855 NEGR1 neuronal growth regulator 1 2 2
MIRT724621 SNAP25 synaptosome associated protein 25 2 2
MIRT724777 PSG4 pregnancy specific beta-1-glycoprotein 4 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-6819 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6819-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6819-3p Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-6819-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-6819-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-6819-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6819-3p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-6819-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)

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