miRTarBase - #MIRT703557


—
pre-miRNA Information
pre-miRNA hsa-mir-4680   
Genomic Coordinates chr10: 110898090 - 110898155
Description Homo sapiens miR-4680 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4680-5p
Sequence 5| AGAACUCUUGCAGUCUUAGAUGU |27
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1274530692 2 dbSNP
rs780271274 5 dbSNP
rs1461423681 7 dbSNP
rs749729920 8 dbSNP
rs1252920446 10 dbSNP
rs201739274 11 dbSNP
rs774971106 19 dbSNP
rs748132091 22 dbSNP
rs773643180 22 dbSNP
rs1235425484 23 dbSNP
Putative Targets

Gene Information
Gene Symbol FKBP14   
Synonyms EDSKMH, FKBP22, IPBP12
Description FK506 binding protein 14
Transcript NM_017946   
Expression
Putative miRNA Targets on FKBP14
3'UTR of FKBP14
(miRNA target sites are highlighted)		 
>FKBP14|NM_017946|3'UTR
   1 AGATACATCTACCCTTTTAATATAGCACTCATCTTTCAAGAGAGGGCAGTCATCTTTAAAGAACATTTTATTTTTATACA
  81 ATGTTCTTTCTTGCTTTGTTTTTTATTTTTATATATTTTTTCTGACTCCTATTTAAAGAACCCCTTAGGTTTCTAAGTAC
 161 CCATTTCTTTCTGATAAGTTATTGGGAAGAAAAAGCTAATTGGTCTTTGAATAGAAGACTTCTGGACAATTTTTCACTTT
 241 CACAGATATGAAGCTTTGTTTTACTTTCTCACTTATAAATTTAAAATGTTGCAACTGGGAATATACCACGACATGAGACC
 321 AGGTTATAGCACAAATTAGCACCCTATATTTCTGCTTCCCTCTATTTTCTCCAAGTTAGAGGTCAACATTTGAAAAGCCT
 401 TTTGCAATAGCCCAAGGCTTGCTATTTTCATGTTATAATGAAATAGTTTATGTGTAACTGGCTCTGAGTCTCTGCTTGAG
 481 GACCAGAGGAAAATGGTTGTTGGACCTGACTTGTTAATGGCTACTGCTTTACTAAGGAGATGTGCAATGCTGAAGTTAGA
 561 AACAAGGTTAATAGCCAGGCATGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACCTGA
 641 GGTTGGGAGTTCGAGACCAGCCTGACCAACACGGAGAAACCCTATCTCTACTAAAAATACAAAAGTAGCCGGGCGTGGTG
 721 ATGCGTGCCTGTAATCCCAGCTACCCAGGAAGGCTGAGGCGGCAGAATCACTTGAACCCGGAGGCGGAGGTTGCGGTAAG
 801 CCGAGATCACCTCCAGCCTGGACACTCTGTCTCGAAAAAAAGAAAAGAAACACGGTTAATAACATATAAATATGTATGCA
 881 TTGAGACATGCTACCTAGGACTTAAGCTGATGAAGCTTGGCTCCTAGTGATTGGTGGCCTATTATGATAAATAGGACAAA
 961 TCATTTATGTGTGAGTTTCTTTGTAATAAAATGTATCAATATGTTATAGATGAGGTAGAAAGTTATATTTATATTCAATA
1041 TTTACTTCTTAAGGCTAGCGGAATATCCTTCCTGGTTCTTTAATGGGTAGTCTATAGTATATTATACTACAATAACATTG
1121 TATCATAAGATAAAGTAGTAAACCAGTCTACATTTTCCCATTTCTGTCTCATCAAAAACTGAAGTTAGCTGGGTGTGGTG
1201 GCTCATGCCTGTAATCCCAGCACTTTGGGGGCCAAGGAGGGTGGATCACTTGAGATCAGGAGTTCAAGACCAGCCTGGCC
1281 AACATGGTGAAACCTTGTCTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGTGCACACCTGTAGTCCCAGCTACTC
1361 GGGAGGCTGAGACAGGAGATTTGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGC
1441 CTGGGTGACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAGAAGCAGACCTACAGCAGCTACTATTGAATAAATACCTAT
1521 CCTGGATTTTAAAAAAGAAAAAAATATATATAATTTTATTTTAAATTGGCTTTTATCTTTAATTCTTTTTTTTAAAGTTA
1601 TCAAATCTTCATTTTCTAAGAGTAGCCCTTTATAGTGTACAAAATGATATTAAGTGCATTATTATCTTCGCTTTTCATGG
1681 CTCTGAGTCATAAAACAAGCTGGTGGATCTCACTGTACCTAATTTATAGACGAGGAAATTGTCATTCAAAAAGATTGACT
1761 GTTATGCCCAGGGTCAGCACTAACCTGCAGAACCAGTATTCAGTCCCCAAGTTCAGTGTCTTCTACTGCCCTCTACTAAT
1841 GAAAAGTGAAAATTTCCCTGGGGTCTAATTCTCTCTTCAGTTTGCTGTGCCGTTGTTTATCTTTGAGTCTTCATTCTCTG
1921 AAGATGGCTTTCTGCCTGTTTCTGGTACATTAGAATTCTCACTATGATATAGAAATGGCTTCAGTTTCATAGCATAATCT
2001 TGCAGTTAGCTCTGAATTGCCTCAAAAACCCTGAACAACGCGAGGTTCCAGATGTGTTTTACTTCTTTCATTCATATTTA
2081 CCCCCATTTGTTGTTTAAAAAGAATTATGAACAATTATTACATCATATGTAGACCACTTTCACTGATTATATGTTGACAT
2161 TTTCCTCAGTAAAACATAAAGTTCTTAACAAGACTATACTGTAACACCTTTCTCCAACAAAATCAGCTGTATGTTGAAAA
2241 CTATTAAGTCATTGCTAATGTTTTAAGCCATAATACAGACAGCCTTATACTCTATGATGGGAGAAGGGAAAGTAGTTTGT
2321 CCGATGGTGCTACTCTGTATAAACATTACTGATGCTATCTATAGTAGGGCAAGAAAAGTAAAAAGAGTTTTGATTATTCA
2401 GGCAGCATTTTTAAAAACCTGTGAATTTGTATCAGTTCTCATCTAAACATTTGGACACAAGTATAAAATGAAAACATATG
2481 CACAAGTTATGGTTTTTAAGTTATCTGCTCTTTTTTTTGGTTTCACTGTACCTTTGTACTCTTCTATTAGTGGGAATAAT
2561 CAGACATGAACTGTGACTTCACATGTACAGTCATACCTCACTTAATGATGGAGATGCACTCTGAGAAATGTCTAATTAGG
2641 TTATTTCATCGTTGTGGGAACATCATAGAGTGTACTTACACAAACCTAGATAGTGTAGCCTGCTACACATGTAGGACATG
2721 TATATAGCCTATTGCTCCTAGGCTACAGCATGTTGCTGTTCTGAATCATGTAGGCAATTGTAACACAATGGCAAGTGTCT
2801 GTTTATTCAAACATCTAAACACAGAAAAGATACTACAACAATAACAATATGGTATAAAAGATTTTGTAAAAAATCTGGTC
2881 AGGTGCAGTGGTTCACGCCTGTAATCCTAGCACTTTGGGAGGCTGCCTCAGCAGGTGGATTGCTTGAGCCCAGAAGCTCA
2961 AGACCAGCCTGGGCAACATGGCGAAACCCCGTCTCTGCTAAAAGTACAAAAGCTGAGGTTGGAGGATCACCTGAGCCTGG
3041 CAAGGTCAAGGCTGCAGTGAGCCATGATCATACCACTGCACTCCAGCCTGGGTGACAGAGTGACTCCCCATCTAAAAAAA
3121 AAAATATATATATATATATATACTATATATATATATATACCATATATATGGTATATATATATATAGTATATATATATATG
3201 GTGTGTGTATATATATATATATGGTATACCTGTATAGGGCACTTACTAACGGAGCTTACAGAACTGGAAGTTGCTCTGGA
3281 TGAGTCAGTGGTGAGTGAATGTAAAGGCCTAGGACATTACTGTACACTACTGTAGACTTTATAAACACCGTACACTTAGG
3361 TGACACTAAAATTTATAAAAAATGTTTTTCTTCTGGTTGGGCATGGTGCCTTATGCCTATAATCCCAGCATTATGGGAGG
3441 CCAAGGTGGGTGGATCACTCGAGGTCATGAGTTTGGGACCAGCCGGGCCAACATGGCTAAACCCCATCTCTACTAAAAAT
3521 ACGATAATTAGCCAGGTGTGGTGGCACATGCGTGTAGTCCCAGCTAATTGAGAGGCTGAGGCAGGAGAATTGCTTGAATC
3601 CAGGAGGTGGAGGTTGCAGTGAGCCAAGATCGAACCACTGCACTCTAGTCTGGGTGACAGAGGAGCAAGACTCTGTCTCA
3681 AAAAAAAAAATTCTATAATTTTTATAGAAATAATAAAAAACTAACCTTAGCTTACTGTAAATTTTCTAGTTTAGAAACTT
3761 ATTTAAAAACAATTTTTGGACTCTTCTAGTAATAACGTAGCTTAAAACACACATTGCATAGCTGTACAAAAATATTTTCC
3841 TTATATCCTTATTATATAAGCTTTTATCTATTTAAATTTTGAATTTTTAAACTTTTTGGTCAAAAACCAAGACAAACACA
3921 CTAGCCTAGGCCTATGCAGGGTCAGGATCAAGACATCCCTAGCAGGTGACAGGAATTTTTCAACTCCATTATAATCTGTG
4001 GGGCCACCATCATATATATATTGTACATTGACCGAAACATGGTTACATGACTATATAATTTGCGTCAATACTGCTCAGTG
4081 TGCCATATTTAAATTTACATGACTATATTGTGATATTCTTTTCAAAATAAAGTTTATTTGGGAGATAACTGAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ugUAGAUUCUGACGUUCUCAAGa 5'
            | ||:||::||  :|||||| 
Target 5' tcACCTGAGGTTG--GGAGTTCg 3'
 633 - 653 149.00 -17.50
2 
miRNA  3' ugUAGAUUCUGACGUUCUCAAGa 5'
            | :|:|||:  ||:|||||| 
Target 5' tcACTTGAGAT--CAGGAGTTCa 3'
 1246 - 1266 149.00 -16.90
3 
miRNA  3' ugUAGAUUCUGACGUUCUCAAGa 5'
            :|||  || |  |||| ||| 
Target 5' tgGTCTTTGAATAGAAGACTTCt 3'
 201 - 223 129.00 -8.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
402867 672 ClinVar
COSN30447620 14 COSMIC
COSN31537135 114 COSMIC
COSN32062923 362 COSMIC
COSN29341223 1022 COSMIC
COSN6877898 1103 COSMIC
COSN9984905 1644 COSMIC
COSN7977107 1991 COSMIC
COSN28008524 2569 COSMIC
COSN28050452 3113 COSMIC
COSN20240952 3123 COSMIC
COSN7977106 3123 COSMIC
COSN24357531 3124 COSMIC
COSN16675615 3236 COSMIC
COSN19416297 3545 COSMIC
COSN25190818 3671 COSMIC
COSN9940828 3706 COSMIC
COSN17213115 4065 COSMIC
COSN26496694 4099 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs751113052 2 dbSNP
rs1288709701 3 dbSNP
rs765397542 4 dbSNP
rs765229844 7 dbSNP
rs913122318 10 dbSNP
rs1427056467 11 dbSNP
rs755189790 15 dbSNP
rs370188386 20 dbSNP
rs753884912 21 dbSNP
rs766378576 22 dbSNP
rs761228507 24 dbSNP
rs1232675080 25 dbSNP
rs1370636691 30 dbSNP
rs773656316 34 dbSNP
rs1301860804 35 dbSNP
rs1345410192 37 dbSNP
rs377576644 40 dbSNP
rs759625515 40 dbSNP
rs1276968127 44 dbSNP
rs1337792982 45 dbSNP
rs777072347 45 dbSNP
rs1214210829 48 dbSNP
rs1275573184 49 dbSNP
rs1484090664 51 dbSNP
rs1237205685 57 dbSNP
rs1266740048 60 dbSNP
rs1450962918 66 dbSNP
rs1199383752 70 dbSNP
rs1248252375 76 dbSNP
rs113568645 78 dbSNP
rs868540529 80 dbSNP
rs1167603386 82 dbSNP
rs1390347567 96 dbSNP
rs200065638 98 dbSNP
rs370585319 102 dbSNP
rs987052401 102 dbSNP
rs954680788 111 dbSNP
rs1387845182 113 dbSNP
rs922747888 120 dbSNP
rs1289962742 122 dbSNP
rs570202173 141 dbSNP
rs1325082711 143 dbSNP
rs34094381 150 dbSNP
rs955843791 153 dbSNP
rs1209830942 154 dbSNP
rs1298673137 156 dbSNP
rs1344551134 159 dbSNP
rs1243962755 160 dbSNP
rs1027981929 162 dbSNP
rs1357900098 166 dbSNP
rs148720896 174 dbSNP
rs1445085719 176 dbSNP
rs566779788 183 dbSNP
rs1376564169 185 dbSNP
rs1278019255 195 dbSNP
rs1438796676 203 dbSNP
rs1181279698 209 dbSNP
rs1367388135 212 dbSNP
rs1331822149 218 dbSNP
rs1022063665 222 dbSNP
rs1457936127 222 dbSNP
rs548151524 237 dbSNP
rs1457084637 247 dbSNP
rs1321643632 249 dbSNP
rs1423981965 254 dbSNP
rs1363671175 259 dbSNP
rs1314544876 262 dbSNP
rs1341176151 272 dbSNP
rs529984597 276 dbSNP
rs952972006 288 dbSNP
rs1035291510 297 dbSNP
rs1348415420 309 dbSNP
rs1025886774 310 dbSNP
rs764772361 315 dbSNP
rs994388315 315 dbSNP
rs1466041830 320 dbSNP
rs561966758 335 dbSNP
rs905146427 338 dbSNP
rs1044363083 345 dbSNP
rs570798299 346 dbSNP
rs1198033048 371 dbSNP
rs1472546371 374 dbSNP
rs898556525 376 dbSNP
rs1391299021 378 dbSNP
rs1468526276 381 dbSNP
rs1489617818 383 dbSNP
rs1302503694 392 dbSNP
rs1038434781 397 dbSNP
rs1217917296 399 dbSNP
rs1227722305 408 dbSNP
rs547697202 413 dbSNP
rs1288866560 417 dbSNP
rs1330977828 417 dbSNP
rs1221445080 424 dbSNP
rs895965846 428 dbSNP
rs1255093453 430 dbSNP
rs1057268526 431 dbSNP
rs1001692324 432 dbSNP
rs531883934 449 dbSNP
rs768971234 450 dbSNP
rs905595062 451 dbSNP
rs940133000 458 dbSNP
rs1414764031 470 dbSNP
rs1042714590 472 dbSNP
rs564531391 477 dbSNP
rs546423517 483 dbSNP
rs1467760503 484 dbSNP
rs368374415 489 dbSNP
rs560859199 493 dbSNP
rs891738068 502 dbSNP
rs1274444185 505 dbSNP
rs187409045 506 dbSNP
rs575057856 507 dbSNP
rs1308610535 518 dbSNP
rs1425707084 524 dbSNP
rs1352224575 538 dbSNP
rs921519284 542 dbSNP
rs878901093 543 dbSNP
rs1312499772 545 dbSNP
rs1234971764 549 dbSNP
rs183479206 550 dbSNP
rs750113311 570 dbSNP
rs975042998 572 dbSNP
rs1299963202 586 dbSNP
rs1254641488 606 dbSNP
rs1490001330 615 dbSNP
rs537406073 625 dbSNP
rs191803260 626 dbSNP
rs942792979 629 dbSNP
rs558199593 630 dbSNP
rs1430532929 631 dbSNP
rs911297361 634 dbSNP
rs1034856180 635 dbSNP
rs1434233156 643 dbSNP
rs984145323 647 dbSNP
rs1479178076 648 dbSNP
rs1388242865 652 dbSNP
rs534006685 653 dbSNP
rs1195119620 660 dbSNP
rs1363968459 662 dbSNP
rs1485821022 666 dbSNP
rs1240758064 671 dbSNP
rs3793247 672 dbSNP
rs1276138699 673 dbSNP
rs1025937752 674 dbSNP
rs1012845901 679 dbSNP
rs973404612 684 dbSNP
rs1278203095 692 dbSNP
rs1221838077 700 dbSNP
rs1489700656 707 dbSNP
rs149595668 710 dbSNP
rs1247715897 711 dbSNP
rs1036285494 714 dbSNP
rs1450311582 715 dbSNP
rs536198963 718 dbSNP
rs1190695849 722 dbSNP
rs1278903781 724 dbSNP
rs1001680031 731 dbSNP
rs1219223784 734 dbSNP
rs1404802856 749 dbSNP
rs1164027105 756 dbSNP
rs867746721 760 dbSNP
rs1287007633 761 dbSNP
rs1364081981 765 dbSNP
rs569164717 769 dbSNP
rs1051235102 779 dbSNP
rs1011236816 780 dbSNP
rs1227225057 785 dbSNP
rs1335682935 786 dbSNP
rs550209952 789 dbSNP
rs921498878 795 dbSNP
rs1040000233 796 dbSNP
rs891453300 802 dbSNP
rs946978828 803 dbSNP
rs1210861602 812 dbSNP
rs1235899424 814 dbSNP
rs1472535435 816 dbSNP
rs1182485851 820 dbSNP
rs548408650 823 dbSNP
rs1052752383 824 dbSNP
rs933234943 826 dbSNP
rs1425469549 827 dbSNP
rs749677393 829 dbSNP
rs1427365932 833 dbSNP
rs1387640193 834 dbSNP
rs531690542 840 dbSNP
rs1418016016 842 dbSNP
rs1322161492 846 dbSNP
rs139356677 853 dbSNP
rs987810341 854 dbSNP
rs1242914864 859 dbSNP
rs1039308740 866 dbSNP
rs943165869 872 dbSNP
rs911349631 881 dbSNP
rs1330276701 883 dbSNP
rs1230602740 888 dbSNP
rs1276819246 901 dbSNP
rs1202072596 902 dbSNP
rs531789894 910 dbSNP
rs1239298054 911 dbSNP
rs984199604 917 dbSNP
rs552672413 919 dbSNP
rs1258845360 923 dbSNP
rs546265237 926 dbSNP
rs927738166 930 dbSNP
rs1203953600 948 dbSNP
rs562942188 952 dbSNP
rs371412083 969 dbSNP
rs1422696486 970 dbSNP
rs1413570714 976 dbSNP
rs1176253984 991 dbSNP
rs577294617 992 dbSNP
rs15812 993 dbSNP
rs1061149 997 dbSNP
rs186122855 1008 dbSNP
rs963272138 1010 dbSNP
rs1450076900 1014 dbSNP
rs1273427323 1019 dbSNP
rs575039050 1021 dbSNP
rs1402058661 1022 dbSNP
rs1016850505 1038 dbSNP
rs560441504 1039 dbSNP
rs1280949280 1051 dbSNP
rs147520798 1059 dbSNP
rs1051643495 1060 dbSNP
rs1167609631 1073 dbSNP
rs1483334972 1074 dbSNP
rs1183831197 1077 dbSNP
rs1244771823 1079 dbSNP
rs1406445145 1083 dbSNP
rs1477552700 1084 dbSNP
rs143215406 1094 dbSNP
rs1182096752 1098 dbSNP
rs1427312106 1110 dbSNP
rs1167405725 1111 dbSNP
rs970197278 1112 dbSNP
rs1021363185 1118 dbSNP
rs770495047 1126 dbSNP
rs1039906527 1130 dbSNP
rs1239041799 1132 dbSNP
rs1011287910 1149 dbSNP
rs576393903 1151 dbSNP
rs558113849 1156 dbSNP
rs1031768648 1161 dbSNP
rs1363281918 1165 dbSNP
rs1267302820 1166 dbSNP
rs1275461207 1179 dbSNP
rs997179994 1186 dbSNP
rs901782384 1192 dbSNP
rs1038948662 1204 dbSNP
rs878972413 1208 dbSNP
rs1287588139 1211 dbSNP
rs1450874524 1215 dbSNP
rs1199272173 1225 dbSNP
rs1007435347 1227 dbSNP
rs1447266295 1236 dbSNP
rs1187475058 1237 dbSNP
rs1290893029 1246 dbSNP
rs887620342 1248 dbSNP
rs1243525437 1249 dbSNP
rs181040024 1253 dbSNP
rs927717665 1255 dbSNP
rs1378758054 1264 dbSNP
rs1048888900 1275 dbSNP
rs1406359089 1277 dbSNP
rs1328328981 1280 dbSNP
rs1386837191 1297 dbSNP
rs1309532200 1299 dbSNP
rs931405230 1310 dbSNP
rs918648575 1312 dbSNP
rs1367472106 1325 dbSNP
rs1390457351 1328 dbSNP
rs1282399043 1329 dbSNP
rs982246129 1334 dbSNP
rs1210267466 1340 dbSNP
rs1274823193 1341 dbSNP
rs376906700 1344 dbSNP
rs1207746629 1345 dbSNP
rs938675611 1360 dbSNP
rs554508787 1361 dbSNP
rs774649201 1363 dbSNP
rs1162171865 1366 dbSNP
rs1421919810 1368 dbSNP
rs1381235543 1375 dbSNP
rs1184740661 1383 dbSNP
rs980314285 1390 dbSNP
rs963262050 1391 dbSNP
rs536406975 1392 dbSNP
rs769032285 1393 dbSNP
rs1457001581 1400 dbSNP
rs571727203 1404 dbSNP
rs970249458 1405 dbSNP
rs1394439184 1419 dbSNP
rs1490192396 1421 dbSNP
rs914744488 1423 dbSNP
rs1341076997 1436 dbSNP
rs1268110490 1440 dbSNP
rs1220071041 1441 dbSNP
rs1355668214 1443 dbSNP
rs1295006731 1446 dbSNP
rs1326841206 1452 dbSNP
rs1227530195 1461 dbSNP
rs1261081155 1465 dbSNP
rs999917840 1467 dbSNP
rs1314730701 1468 dbSNP
rs1486640606 1471 dbSNP
rs1197084889 1476 dbSNP
rs1014827507 1478 dbSNP
rs1198314359 1481 dbSNP
rs1338993362 1481 dbSNP
rs369161819 1482 dbSNP
rs951482722 1485 dbSNP
rs1250225014 1489 dbSNP
rs1405056205 1494 dbSNP
rs1472493617 1501 dbSNP
rs990253525 1505 dbSNP
rs1344262951 1507 dbSNP
rs956013387 1514 dbSNP
rs899923519 1535 dbSNP
rs1416648979 1537 dbSNP
rs763106845 1543 dbSNP
rs1348523595 1545 dbSNP
rs997630997 1545 dbSNP
rs1402394441 1546 dbSNP
rs894051432 1546 dbSNP
rs550866227 1547 dbSNP
rs965733610 1549 dbSNP
rs1345169322 1551 dbSNP
rs1212362659 1558 dbSNP
rs1250328567 1570 dbSNP
rs1483005442 1578 dbSNP
rs1183466060 1581 dbSNP
rs1017657336 1582 dbSNP
rs906163020 1585 dbSNP
rs1046072406 1594 dbSNP
rs1198456059 1594 dbSNP
rs1431767323 1594 dbSNP
rs1451951337 1595 dbSNP
rs1436706499 1599 dbSNP
rs1166792699 1602 dbSNP
rs1368694629 1607 dbSNP
rs947767926 1622 dbSNP
rs1298639499 1625 dbSNP
rs1375283913 1627 dbSNP
rs1384839549 1632 dbSNP
rs538260831 1633 dbSNP
rs1007486192 1637 dbSNP
rs973201398 1643 dbSNP
rs1271871205 1649 dbSNP
rs887671288 1663 dbSNP
rs1206546916 1664 dbSNP
rs191020625 1665 dbSNP
rs1487739034 1667 dbSNP
rs1209586293 1669 dbSNP
rs907777187 1669 dbSNP
rs116582283 1670 dbSNP
rs1389664161 1673 dbSNP
rs954661221 1677 dbSNP
rs1489217006 1679 dbSNP
rs897253499 1685 dbSNP
rs1356171875 1687 dbSNP
rs79160784 1691 dbSNP
rs1229871191 1703 dbSNP
rs1037113705 1709 dbSNP
rs1394866528 1714 dbSNP
rs1442659591 1715 dbSNP
rs1030040299 1722 dbSNP
rs1363861757 1726 dbSNP
rs976821193 1727 dbSNP
rs1262215772 1729 dbSNP
rs964118638 1731 dbSNP
rs1018401437 1732 dbSNP
rs1011061634 1742 dbSNP
rs1320053779 1747 dbSNP
rs893955563 1749 dbSNP
rs938714838 1750 dbSNP
rs1223676789 1754 dbSNP
rs1322304519 1756 dbSNP
rs1247616625 1766 dbSNP
rs1465431770 1767 dbSNP
rs1188352532 1804 dbSNP
rs1280797402 1807 dbSNP
rs527830842 1815 dbSNP
rs1044335143 1817 dbSNP
rs560591872 1821 dbSNP
rs1163900286 1826 dbSNP
rs906786664 1830 dbSNP
rs1046484593 1837 dbSNP
rs1318193831 1838 dbSNP
rs1387418269 1839 dbSNP
rs777197249 1840 dbSNP
rs947756574 1840 dbSNP
rs1376274135 1849 dbSNP
rs914814671 1860 dbSNP
rs1337466035 1863 dbSNP
rs1226906649 1867 dbSNP
rs554904998 1871 dbSNP
rs375404260 1879 dbSNP
rs990302589 1891 dbSNP
rs185579614 1892 dbSNP
rs941801701 1903 dbSNP
rs1235806900 1912 dbSNP
rs907670034 1915 dbSNP
rs1380897442 1918 dbSNP
rs562856101 1923 dbSNP
rs1047562766 1937 dbSNP
rs1404711793 1953 dbSNP
rs535406089 1954 dbSNP
rs1476089650 1959 dbSNP
rs1156682074 1968 dbSNP
rs924390656 1970 dbSNP
rs975867156 1974 dbSNP
rs1469467413 1977 dbSNP
rs572762185 1978 dbSNP
rs1356952868 1979 dbSNP
rs1314064131 1983 dbSNP
rs765415003 1984 dbSNP
rs1357911572 1992 dbSNP
rs1017301644 2002 dbSNP
rs923249667 2003 dbSNP
rs1007204791 2006 dbSNP
rs976738265 2008 dbSNP
rs1478164971 2022 dbSNP
rs544538743 2023 dbSNP
rs1237134816 2027 dbSNP
rs532645721 2039 dbSNP
rs951969708 2040 dbSNP
rs1027553465 2041 dbSNP
rs1281037407 2051 dbSNP
rs544672913 2051 dbSNP
rs139320690 2053 dbSNP
rs1203970935 2056 dbSNP
rs897648159 2063 dbSNP
rs540214225 2069 dbSNP
rs1232097170 2070 dbSNP
rs1470367381 2073 dbSNP
rs1260755592 2077 dbSNP
rs1422579328 2080 dbSNP
rs1173697088 2081 dbSNP
rs181137295 2083 dbSNP
rs1428382487 2086 dbSNP
rs1307913666 2093 dbSNP
rs1336751713 2096 dbSNP
rs1444791151 2098 dbSNP
rs552729005 2106 dbSNP
rs1339403476 2108 dbSNP
rs1270131054 2109 dbSNP
rs71528593 2111 dbSNP
rs1367169061 2119 dbSNP
rs1225866845 2122 dbSNP
rs1305738180 2123 dbSNP
rs907257331 2125 dbSNP
rs1044387362 2135 dbSNP
rs1202975534 2136 dbSNP
rs1342693659 2142 dbSNP
rs948705826 2145 dbSNP
rs999738325 2153 dbSNP
rs761927739 2155 dbSNP
rs893429552 2156 dbSNP
rs1244678797 2160 dbSNP
rs758323701 2169 dbSNP
rs188998675 2170 dbSNP
rs1396390888 2174 dbSNP
rs1380892829 2179 dbSNP
rs1447074789 2186 dbSNP
rs934875682 2188 dbSNP
rs1167900441 2190 dbSNP
rs1333555271 2197 dbSNP
rs56094929 2199 dbSNP
rs1011848323 2201 dbSNP
rs976635550 2223 dbSNP
rs769982543 2225 dbSNP
rs1227720357 2242 dbSNP
rs1167331687 2248 dbSNP
rs1339976993 2250 dbSNP
rs769198507 2252 dbSNP
rs1287471831 2265 dbSNP
rs910288865 2272 dbSNP
rs886231466 2283 dbSNP
rs985815752 2287 dbSNP
rs575477692 2288 dbSNP
rs1443743079 2295 dbSNP
rs1191843347 2301 dbSNP
rs555974302 2322 dbSNP
rs146908974 2323 dbSNP
rs1476683372 2327 dbSNP
rs923163503 2337 dbSNP
rs972013833 2338 dbSNP
rs1462249517 2339 dbSNP
rs1328220340 2340 dbSNP
rs746347649 2342 dbSNP
rs962231258 2350 dbSNP
rs1319080731 2358 dbSNP
rs1328204494 2361 dbSNP
rs1034877645 2363 dbSNP
rs1282304033 2368 dbSNP
rs1003757715 2370 dbSNP
rs538965979 2375 dbSNP
rs1326628346 2379 dbSNP
rs747474125 2386 dbSNP
rs1261825015 2392 dbSNP
rs1293087207 2393 dbSNP
rs1448184844 2397 dbSNP
rs1186077848 2409 dbSNP
rs924083514 2412 dbSNP
rs775939136 2427 dbSNP
rs1023004041 2429 dbSNP
rs1012905173 2431 dbSNP
rs1380962211 2433 dbSNP
rs893146592 2438 dbSNP
rs781728051 2476 dbSNP
rs1335309482 2477 dbSNP
rs1326912280 2478 dbSNP
rs1354742954 2479 dbSNP
rs1415232174 2480 dbSNP
rs1294922477 2483 dbSNP
rs184238567 2486 dbSNP
rs1237919148 2490 dbSNP
rs1260898426 2492 dbSNP
rs879313380 2502 dbSNP
rs1040578183 2503 dbSNP
rs944849875 2507 dbSNP
rs1280311492 2514 dbSNP
rs1190610974 2519 dbSNP
rs1250102461 2519 dbSNP
rs959621870 2519 dbSNP
rs1423767880 2546 dbSNP
rs1418809692 2554 dbSNP
rs182397562 2556 dbSNP
rs1365721152 2561 dbSNP
rs1159995118 2571 dbSNP
rs985867822 2573 dbSNP
rs1005879060 2584 dbSNP
rs930343405 2592 dbSNP
rs1376089523 2593 dbSNP
rs534147666 2594 dbSNP
rs972115893 2605 dbSNP
rs1026088677 2607 dbSNP
rs34227197 2612 dbSNP
rs1307316357 2615 dbSNP
rs778678740 2624 dbSNP
rs1270250262 2625 dbSNP
rs1302066662 2629 dbSNP
rs1035335523 2631 dbSNP
rs982008118 2632 dbSNP
rs1347920278 2635 dbSNP
rs901648077 2636 dbSNP
rs1038894566 2637 dbSNP
rs1480532021 2640 dbSNP
rs943228062 2648 dbSNP
rs1253000287 2650 dbSNP
rs1357831312 2651 dbSNP
rs893098249 2670 dbSNP
rs570635860 2689 dbSNP
rs1455607604 2691 dbSNP
rs936714640 2692 dbSNP
rs1371237948 2694 dbSNP
rs924002118 2712 dbSNP
rs1298545002 2713 dbSNP
rs748817983 2718 dbSNP
rs1277967135 2722 dbSNP
rs1438299032 2728 dbSNP
rs566872722 2731 dbSNP
rs1371149177 2735 dbSNP
rs141621884 2737 dbSNP
rs1294138209 2742 dbSNP
rs1307415893 2748 dbSNP
rs1303754919 2750 dbSNP
rs777354057 2752 dbSNP
rs147989333 2754 dbSNP
rs1404241498 2761 dbSNP
rs1033030026 2777 dbSNP
rs959610393 2778 dbSNP
rs1320004021 2787 dbSNP
rs777215871 2791 dbSNP
rs1427852188 2797 dbSNP
rs1016502102 2798 dbSNP
rs1374606992 2805 dbSNP
rs1459652926 2810 dbSNP
rs1163808322 2813 dbSNP
rs554129932 2815 dbSNP
rs1401034054 2820 dbSNP
rs190217699 2821 dbSNP
rs1442547858 2823 dbSNP
rs1286629084 2828 dbSNP
rs1360589008 2830 dbSNP
rs903456630 2831 dbSNP
rs1383303080 2833 dbSNP
rs1298308375 2834 dbSNP
rs1041022632 2839 dbSNP
rs1026414421 2842 dbSNP
rs1274117196 2851 dbSNP
rs756017201 2872 dbSNP
rs1213823588 2873 dbSNP
rs1241626476 2881 dbSNP
rs889293300 2885 dbSNP
rs373118535 2887 dbSNP
rs1489996627 2888 dbSNP
rs1050543741 2894 dbSNP
rs1017447266 2896 dbSNP
rs534046863 2897 dbSNP
rs930397505 2901 dbSNP
rs1474140194 2911 dbSNP
rs1186939240 2915 dbSNP
rs920312879 2919 dbSNP
rs550759247 2929 dbSNP
rs532708034 2931 dbSNP
rs940348710 2932 dbSNP
rs1344117554 2939 dbSNP
rs927938064 2940 dbSNP
rs934590550 2941 dbSNP
rs982445462 2948 dbSNP
rs1354111069 2956 dbSNP
rs969237790 2959 dbSNP
rs1446740439 2964 dbSNP
rs1357712197 2972 dbSNP
rs565533036 2978 dbSNP
rs371735673 2979 dbSNP
rs528063129 2982 dbSNP
rs902482068 2983 dbSNP
rs1218029945 2990 dbSNP
rs758019589 2991 dbSNP
rs1484659567 2993 dbSNP
rs1042789132 2995 dbSNP
rs1258007160 3002 dbSNP
rs1033494505 3009 dbSNP
rs1473630148 3017 dbSNP
rs998904481 3018 dbSNP
rs967774082 3033 dbSNP
rs1406750374 3054 dbSNP
rs1419224989 3074 dbSNP
rs56003228 3081 dbSNP
rs1373027846 3082 dbSNP
rs767253404 3084 dbSNP
rs889347371 3088 dbSNP
rs1313968426 3093 dbSNP
rs1377701270 3096 dbSNP
rs990936483 3104 dbSNP
rs1440424356 3110 dbSNP
rs1279256617 3111 dbSNP
rs1344314450 3112 dbSNP
rs938207693 3118 dbSNP
rs1225621293 3120 dbSNP
rs1050597357 3121 dbSNP
rs994990513 3122 dbSNP
rs200361354 3123 dbSNP
rs1491205814 3124 dbSNP
rs1180078782 3125 dbSNP
rs1232011680 3125 dbSNP
rs1491414715 3125 dbSNP
rs1491554009 3125 dbSNP
rs754801792 3125 dbSNP
rs1406235874 3126 dbSNP
rs1324081505 3127 dbSNP
rs375102296 3127 dbSNP
rs542744202 3127 dbSNP
rs763302633 3127 dbSNP
rs1438135672 3128 dbSNP
rs1463179499 3128 dbSNP
rs1200195355 3129 dbSNP
rs1193695664 3130 dbSNP
rs1250720726 3130 dbSNP
rs1467690351 3130 dbSNP
rs909404986 3133 dbSNP
rs985033426 3133 dbSNP
rs374217541 3139 dbSNP
rs951043473 3140 dbSNP
rs56038337 3141 dbSNP
rs12701003 3142 dbSNP
rs1269497342 3143 dbSNP
rs1382895528 3143 dbSNP
rs1394021720 3143 dbSNP
rs1428577793 3143 dbSNP
rs368119519 3143 dbSNP
rs542710918 3143 dbSNP
rs1220233624 3144 dbSNP
rs1333718415 3144 dbSNP
rs1339877119 3144 dbSNP
rs372354095 3145 dbSNP
rs1046042580 3146 dbSNP
rs1291438657 3146 dbSNP
rs947987757 3156 dbSNP
rs1243172891 3158 dbSNP
rs557242904 3158 dbSNP
rs13311140 3159 dbSNP
rs1165166898 3160 dbSNP
rs1317634390 3160 dbSNP
rs1326935396 3160 dbSNP
rs1417520648 3160 dbSNP
rs1462170391 3160 dbSNP
rs535898901 3160 dbSNP
rs55805537 3160 dbSNP
rs1233550176 3161 dbSNP
rs1291212104 3161 dbSNP
rs1354539049 3161 dbSNP
rs200424086 3161 dbSNP
rs1240703534 3163 dbSNP
rs1285571319 3163 dbSNP
rs1347978797 3167 dbSNP
rs1046659286 3170 dbSNP
rs1204036182 3170 dbSNP
rs1205864544 3170 dbSNP
rs1285645991 3170 dbSNP
rs949510729 3170 dbSNP
rs1461916507 3172 dbSNP
rs1475726045 3173 dbSNP
rs989299321 3173 dbSNP
rs548521991 3179 dbSNP
rs1033272088 3184 dbSNP
rs1491106922 3185 dbSNP
rs957865415 3185 dbSNP
rs1333607105 3186 dbSNP
rs1491515123 3186 dbSNP
rs756553412 3186 dbSNP
rs1237809425 3187 dbSNP
rs1320017517 3187 dbSNP
rs545216741 3188 dbSNP
rs1245445563 3189 dbSNP
rs903098775 3189 dbSNP
rs1275030971 3190 dbSNP
rs1280205617 3195 dbSNP
rs1215083194 3197 dbSNP
rs1248790049 3200 dbSNP
rs1486240077 3200 dbSNP
rs977915312 3201 dbSNP
rs1182750533 3202 dbSNP
rs967446718 3203 dbSNP
rs1019381662 3204 dbSNP
rs1042386882 3206 dbSNP
rs987440519 3207 dbSNP
rs1304391181 3209 dbSNP
rs1466410466 3209 dbSNP
rs544178068 3209 dbSNP
rs1029229422 3213 dbSNP
rs1331552297 3217 dbSNP
rs896559428 3219 dbSNP
rs1438066883 3221 dbSNP
rs995038320 3221 dbSNP
rs1491474880 3222 dbSNP
rs1235983251 3223 dbSNP
rs1491132178 3223 dbSNP
rs374843167 3223 dbSNP
rs397932904 3223 dbSNP
rs56171632 3223 dbSNP
rs1196649670 3224 dbSNP
rs1240229558 3231 dbSNP
rs1467250912 3232 dbSNP
rs185640910 3235 dbSNP
rs1253645427 3239 dbSNP
rs1433709557 3242 dbSNP
rs1383113685 3246 dbSNP
rs1055111793 3251 dbSNP
rs1371153078 3255 dbSNP
rs1335617366 3258 dbSNP
rs78534966 3262 dbSNP
rs148861811 3266 dbSNP
rs1171817968 3268 dbSNP
rs1367647187 3271 dbSNP
rs929571954 3281 dbSNP
rs1409871392 3290 dbSNP
rs1294029312 3292 dbSNP
rs1417862553 3293 dbSNP
rs1197821983 3295 dbSNP
rs1005058684 3300 dbSNP
rs540540775 3312 dbSNP
rs1260302984 3313 dbSNP
rs1332978806 3320 dbSNP
rs906255341 3321 dbSNP
rs975759698 3330 dbSNP
rs1273929578 3335 dbSNP
rs866055440 3340 dbSNP
rs1046079619 3349 dbSNP
rs947707421 3350 dbSNP
rs965724863 3353 dbSNP
rs895108620 3354 dbSNP
rs1425414852 3358 dbSNP
rs1053620944 3360 dbSNP
rs1163698515 3361 dbSNP
rs910236551 3363 dbSNP
rs936565958 3366 dbSNP
rs1458965234 3383 dbSNP
rs985848263 3383 dbSNP
rs1287702772 3384 dbSNP
rs1384858224 3384 dbSNP
rs957115549 3387 dbSNP
rs554643134 3389 dbSNP
rs536393237 3393 dbSNP
rs796400567 3402 dbSNP
rs1272339979 3409 dbSNP
rs1323648848 3413 dbSNP
rs1024668188 3414 dbSNP
rs372301472 3417 dbSNP
rs1014146644 3438 dbSNP
rs868777031 3439 dbSNP
rs1359820038 3446 dbSNP
rs1217197137 3452 dbSNP
rs977926042 3457 dbSNP
rs946135324 3460 dbSNP
rs765482046 3461 dbSNP
rs887903074 3468 dbSNP
rs1049221918 3469 dbSNP
rs146697096 3474 dbSNP
rs1440778877 3484 dbSNP
rs929493961 3485 dbSNP
rs550771354 3487 dbSNP
rs953356378 3489 dbSNP
rs1028965395 3491 dbSNP
rs532522477 3522 dbSNP
rs1303698614 3523 dbSNP
rs192439267 3530 dbSNP
rs1015520664 3532 dbSNP
rs1005040010 3537 dbSNP
rs1161964808 3541 dbSNP
rs1421083855 3543 dbSNP
rs910185601 3546 dbSNP
rs1240848855 3551 dbSNP
rs116050106 3552 dbSNP
rs1484605617 3553 dbSNP
rs957105732 3556 dbSNP
rs1237780788 3565 dbSNP
rs1484032698 3567 dbSNP
rs1024679981 3568 dbSNP
rs925725702 3569 dbSNP
rs1379183165 3576 dbSNP
rs1439753367 3578 dbSNP
rs977266567 3578 dbSNP
rs967594420 3579 dbSNP
rs1176723116 3601 dbSNP
rs1177245799 3602 dbSNP
rs1361218033 3604 dbSNP
rs1024157130 3611 dbSNP
rs1297800199 3622 dbSNP
rs992672734 3624 dbSNP
rs1479671633 3629 dbSNP
rs958618458 3631 dbSNP
rs144724786 3632 dbSNP
rs1218506382 3637 dbSNP
rs1490472501 3640 dbSNP
rs141029727 3643 dbSNP
rs1202069828 3647 dbSNP
rs887855933 3657 dbSNP
rs1242204935 3662 dbSNP
rs1179982661 3663 dbSNP
rs1250522014 3666 dbSNP
rs1478003451 3669 dbSNP
rs1173618754 3672 dbSNP
rs1053344689 3673 dbSNP
rs1028177097 3675 dbSNP
rs1408541883 3679 dbSNP
rs79087094 3680 dbSNP
rs993615166 3681 dbSNP
rs1401284574 3688 dbSNP
rs936602145 3690 dbSNP
rs1323980610 3691 dbSNP
rs1370287700 3691 dbSNP
rs753664013 3695 dbSNP
rs1275351360 3696 dbSNP
rs114363266 3703 dbSNP
rs1212586611 3704 dbSNP
rs1257122098 3707 dbSNP
rs943867509 3714 dbSNP
rs912019681 3717 dbSNP
rs1200092061 3721 dbSNP
rs1270748169 3721 dbSNP
rs1318162444 3721 dbSNP
rs1450514692 3723 dbSNP
rs944899357 3726 dbSNP
rs1305559169 3730 dbSNP
rs1248958936 3742 dbSNP
rs987561763 3761 dbSNP
rs1365399140 3778 dbSNP
rs1193413019 3781 dbSNP
rs1424704833 3787 dbSNP
rs1301643372 3789 dbSNP
rs1455635546 3796 dbSNP
rs1050078684 3797 dbSNP
rs1360080660 3801 dbSNP
rs1390176144 3810 dbSNP
rs1406000501 3812 dbSNP
rs932015237 3813 dbSNP
rs1324203791 3814 dbSNP
rs1351538653 3814 dbSNP
rs1428469368 3827 dbSNP
rs1277361593 3829 dbSNP
rs1364623435 3837 dbSNP
rs935679653 3847 dbSNP
rs1220138853 3851 dbSNP
rs1291023831 3854 dbSNP
rs1355119391 3856 dbSNP
rs921947172 3857 dbSNP
rs758504246 3858 dbSNP
rs1291329684 3859 dbSNP
rs530666436 3862 dbSNP
rs73077968 3873 dbSNP
rs569369525 3877 dbSNP
rs1489463296 3883 dbSNP
rs992659926 3886 dbSNP
rs186739054 3905 dbSNP
rs1368115829 3911 dbSNP
rs1201583800 3917 dbSNP
rs1480702715 3920 dbSNP
rs1268041129 3924 dbSNP
rs1473201722 3926 dbSNP
rs1207861875 3933 dbSNP
rs878873051 3934 dbSNP
rs760348739 3940 dbSNP
rs1405831775 3958 dbSNP
rs1417806956 3961 dbSNP
rs984067762 3963 dbSNP
rs1297477473 3964 dbSNP
rs1360974688 3976 dbSNP
rs1486689326 3980 dbSNP
rs1310753764 3984 dbSNP
rs1339520272 3988 dbSNP
rs1244981960 3990 dbSNP
rs1285482362 4013 dbSNP
rs1347861124 4013 dbSNP
rs577730139 4015 dbSNP
rs1287337134 4022 dbSNP
rs958607068 4022 dbSNP
rs1034258980 4033 dbSNP
rs970914838 4034 dbSNP
rs1443242993 4037 dbSNP
rs552369280 4038 dbSNP
rs952117602 4040 dbSNP
rs1345471563 4043 dbSNP
rs1011951491 4047 dbSNP
rs1439126995 4051 dbSNP
rs1158043301 4052 dbSNP
rs1380827252 4055 dbSNP
rs1299760129 4062 dbSNP
rs1384290205 4063 dbSNP
rs959089962 4064 dbSNP
rs772744941 4067 dbSNP
rs1000523493 4068 dbSNP
rs541345178 4072 dbSNP
rs902451421 4080 dbSNP
rs1335757386 4085 dbSNP
rs368207102 4086 dbSNP
rs1310710662 4092 dbSNP
rs1356488909 4098 dbSNP
rs1232687034 4100 dbSNP
rs1042304584 4104 dbSNP
rs897911716 4107 dbSNP
rs142937098 4109 dbSNP
rs1202436705 4132 dbSNP
rs1008511180 4138 dbSNP
rs1177281232 4141 dbSNP
rs1457414939 4145 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uguagauucugacGUUCUCAAGa 5'
                       ||:|||||| 
Target 5' -----------auCAGGAGUUCa 3'
 		1 - 12
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000222803.5 | 3UTR | AUCAGGAGUUCAAGACCAGCCUGGCCAACAUGGUGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
133 hsa-miR-4680-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT378771 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT393867 ZDHHC21 zinc finger DHHC-type containing 21 2 4
MIRT446684 C2CD2 C2 calcium dependent domain containing 2 2 2
MIRT447600 MRPL3 mitochondrial ribosomal protein L3 2 2
MIRT450708 RNF152 ring finger protein 152 2 2
MIRT450784 PAPOLG poly(A) polymerase gamma 2 2
MIRT454623 COL23A1 collagen type XXIII alpha 1 chain 2 8
MIRT461620 PTCD3 pentatricopeptide repeat domain 3 2 2
MIRT462695 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT475530 HOXA3 homeobox A3 2 8
MIRT475739 HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 2 4
MIRT489676 CYP1A1 cytochrome P450 family 1 subfamily A member 1 2 2
MIRT490610 SLC47A1 solute carrier family 47 member 1 2 2
MIRT493628 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT496152 RPS15A ribosomal protein S15a 2 2
MIRT499232 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT501496 PRICKLE2 prickle planar cell polarity protein 2 2 2
MIRT507163 GAS2L3 growth arrest specific 2 like 3 2 2
MIRT512389 MTRNR2L1 MT-RNR2-like 1 2 4
MIRT514626 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT517474 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT525332 CNGB1 cyclic nucleotide gated channel beta 1 2 2
MIRT526685 BAK1 BCL2 antagonist/killer 1 2 2
MIRT527317 CCR2 C-C motif chemokine receptor 2 2 2
MIRT527608 EYS eyes shut homolog (Drosophila) 2 2
MIRT528794 RAB32 RAB32, member RAS oncogene family 2 2
MIRT531048 TIPARP TCDD inducible poly(ADP-ribose) polymerase 2 2
MIRT532254 TBPL2 TATA-box binding protein like 2 2 2
MIRT533801 TMED7 transmembrane p24 trafficking protein 7 2 4
MIRT535887 MLEC malectin 2 2
MIRT540704 PDPK1 3-phosphoinositide dependent protein kinase 1 2 4
MIRT544645 PHF8 PHD finger protein 8 2 4
MIRT545760 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT555310 PPP2R5C protein phosphatase 2 regulatory subunit B'gamma 2 2
MIRT555877 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 4
MIRT559507 ARID5B AT-rich interaction domain 5B 2 2
MIRT560448 SLC30A7 solute carrier family 30 member 7 2 2
MIRT561262 ZIK1 zinc finger protein interacting with K protein 1 2 2
MIRT561795 PAWR pro-apoptotic WT1 regulator 2 2
MIRT567007 KLHL15 kelch like family member 15 2 2
MIRT569298 SURF6 surfeit 6 2 2
MIRT570606 MTRNR2L11 MT-RNR2-like 11 2 2
MIRT572888 ADCY2 adenylate cyclase 2 2 2
MIRT573119 ADAMTS18 ADAM metallopeptidase with thrombospondin type 1 motif 18 2 2
MIRT608332 ZNF670 zinc finger protein 670 2 6
MIRT614942 KCNK5 potassium two pore domain channel subfamily K member 5 2 2
MIRT615324 ERN1 endoplasmic reticulum to nucleus signaling 1 2 2
MIRT618441 ZNF800 zinc finger protein 800 2 2
MIRT620110 HARBI1 harbinger transposase derived 1 2 2
MIRT626008 ZNF517 zinc finger protein 517 2 2
MIRT626626 SLC30A6 solute carrier family 30 member 6 2 2
MIRT627842 POU3F1 POU class 3 homeobox 1 2 2
MIRT628386 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT629305 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT629864 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT630444 IDE insulin degrading enzyme 2 2
MIRT631854 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT633173 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT633477 ZNF724P zinc finger protein 724 2 2
MIRT634395 PLSCR1 phospholipid scramblase 1 2 2
MIRT635538 TRIM72 tripartite motif containing 72 2 2
MIRT635821 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT636169 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT636797 CYB5D1 cytochrome b5 domain containing 1 2 2
MIRT637952 IVD isovaleryl-CoA dehydrogenase 2 2
MIRT645136 HES2 hes family bHLH transcription factor 2 2 2
MIRT645667 ADK adenosine kinase 2 2
MIRT646148 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT647004 NCR3LG1 natural killer cell cytotoxicity receptor 3 ligand 1 2 2
MIRT648187 C2orf68 chromosome 2 open reading frame 68 2 2
MIRT650090 TERF2 telomeric repeat binding factor 2 2 2
MIRT650329 RTN2 reticulon 2 2 2
MIRT654224 RNF165 ring finger protein 165 2 2
MIRT654545 RAB1A RAB1A, member RAS oncogene family 2 2
MIRT656457 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT656828 KLF8 Kruppel like factor 8 2 2
MIRT657112 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT657930 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT659375 CREG2 cellular repressor of E1A stimulated genes 2 2 2
MIRT659833 CARHSP1 calcium regulated heat stable protein 1 2 2
MIRT662108 LACTB lactamase beta 2 4
MIRT662789 TBC1D25 TBC1 domain family member 25 2 2
MIRT669501 ARL3 ADP ribosylation factor like GTPase 3 2 2
MIRT669759 ZNF101 zinc finger protein 101 2 4
MIRT669800 GAN gigaxonin 2 2
MIRT670050 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT670299 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT670388 EMP2 epithelial membrane protein 2 2 2
MIRT672862 C22orf29 retrotransposon Gag like 10 2 2
MIRT672890 FXN frataxin 2 2
MIRT673210 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT674001 KCNN3 potassium calcium-activated channel subfamily N member 3 2 2
MIRT674163 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 2 2
MIRT674502 TIRAP TIR domain containing adaptor protein 2 2
MIRT675470 NUBPL nucleotide binding protein like 2 2
MIRT675671 TMOD2 tropomodulin 2 2 2
MIRT676006 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676074 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT676386 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT676764 SNX2 sorting nexin 2 2 2
MIRT676896 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT676978 ZNF708 zinc finger protein 708 2 2
MIRT677236 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT677369 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT677464 PDLIM3 PDZ and LIM domain 3 2 2
MIRT678081 EIF2A eukaryotic translation initiation factor 2A 2 2
MIRT678093 ATCAY ATCAY, caytaxin 2 2
MIRT678324 FBLIM1 filamin binding LIM protein 1 2 2
MIRT678417 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678521 ZNF347 zinc finger protein 347 2 2
MIRT678700 TRIP11 thyroid hormone receptor interactor 11 2 2
MIRT678829 PDE6A phosphodiesterase 6A 2 2
MIRT679991 RUNDC1 RUN domain containing 1 2 2
MIRT680751 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT681249 ZNF383 zinc finger protein 383 2 2
MIRT681422 GTF3C6 general transcription factor IIIC subunit 6 2 2
MIRT681948 SLC19A3 solute carrier family 19 member 3 2 2
MIRT689278 C5AR2 complement component 5a receptor 2 2 2
MIRT690389 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT691845 OSCAR osteoclast associated, immunoglobulin-like receptor 2 2
MIRT693863 IYD iodotyrosine deiodinase 2 2
MIRT696002 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT701930 MLLT1 MLLT1, super elongation complex subunit 2 2
MIRT702341 KLHL7 kelch like family member 7 2 2
MIRT703557 FKBP14 FK506 binding protein 14 2 2
MIRT705033 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT706341 STAC2 SH3 and cysteine rich domain 2 2 2
MIRT709671 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT711212 EFHB EF-hand domain family member B 2 2
MIRT718342 PURA purine rich element binding protein A 2 2
MIRT722755 SIRPB2 signal regulatory protein beta 2 2 2
MIRT723535 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 2 2
MIRT724498 BFAR bifunctional apoptosis regulator 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4680-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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