pre-miRNA Information
pre-miRNA hsa-mir-3622b   
Genomic Coordinates chr8: 27701673 - 27701767
Description Homo sapiens miR-3622b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3622b-3p
Sequence 58| UCACCUGAGCUCCCGUGCCUG |78
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1232922758 2 dbSNP
rs530939348 5 dbSNP
rs1439657384 10 dbSNP
rs1157333896 12 dbSNP
rs66683138 14 dbSNP
rs1044808718 15 dbSNP
rs946438979 19 dbSNP
rs551845360 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CTSS   
Synonyms -
Description cathepsin S
Transcript NM_004079   
Expression
Putative miRNA Targets on CTSS
3'UTR of CTSS
(miRNA target sites are highlighted)
>CTSS|NM_004079|3'UTR
   1 AGGATCTCTCCTTTTTATAACAAATCAAGAAATATGAAGCACTTTCTCTTAACTTAATTTTTCCTGCTGTATCCAGAAGA
  81 AATAATTGTGTCATGATTAATGTGTATTTACTGTACTAATTAGAAAATATAGTTTGAGGCCGGGCACGGTGGCTCACGCC
 161 TGTAATCCCAGTACTTGGGAGGCCAAGGCAGGCATATCAACTTGAGGCCAGGAGTTAAAGAGCAGCCTGGCTAACATGGT
 241 GAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGAGCACGGTGGTGCATGCCTGTAATCCCAGCTACTTGGGAGGC
 321 TGAGGCACGAGATTCCTTGAACCCAAGAGGTTGAGGCTATGTTGAGCTGAGATCACACCACTGTACTCCAGCCTGGATGA
 401 CAGAGTGGAGACTCTGTTTCAAAAAAACAGAAAAGAAAATATAGTTTGATTCTTCATTTTTTTAAATTTGCAAATCTCAG
 481 GATAAAGTTTGCTAAGTAAATTAGTAATGTACTATAGATATAACTGTACAAAAATTGTTCAACCTAAAACAATCTGTAAT
 561 TGCTTATTGTTTTATTGTATACTCTTTGTCTTTTTAAGACCCCTAATAGCCTTTTGTAACTTGATGGCTTAAAAATACTT
 641 AATAAATCTGCCATTTCAAATTTCTATCATTGCCACATACCATTCTTATTCCTAGGCAACTATTAATAATCTATCCTGAG
 721 AATATTAATTGTGGTATTCTGGTGATGGGGTTTAGCAACTTTGATGGAAGAAAATATTAGGCTATAAATGTCCTAAGGAC
 801 TCAGATTGTATCTTTGTACAGAAGAGGATTCAAAACGCCACGTGTAGTGGCTCATGCCTGTAATCCCAACACTTTGGGAG
 881 GCTGAAGTAGGAGGATCGTCTTGAGCCCAGGAGTTCAAGACCAGCCTGGACAACATAGTGAGACCTTGTCTCCACAAAAA
 961 TAAAAAAGAAACTATCCAGGAGTGGTGGTGTGTGCCTGTGGTCCCTGCTATGCAGATGTCTAAGACAGGAGGATCACAAG
1041 AGCCCAGGAGGTTGAGAATGCAGTGAGCTTGTAATTGCACCACTGCACTCCAGCCTGGGTGACAGAGCAAGACCCTGTCT
1121 TAAAAAAAGAGGATTCAACACATATTTTTATATTATGTTAAAGTAAAGAAATGCATAAAAGACAAGCACTTTGGAAGAAT
1201 TATTTTAATGATCAACAATTTAATGTATTAGTCCAAATTATTTTTACGTAGTCATCAACAATTTGACCAGGGCCTTTATT
1281 TGGCAAATAACTGAGCCAACCAGAATAAAATAACCAATACTCCACTGCTCATATTTTTATCTAATTCAGATGGATCTTCC
1361 TTACAACTGCTCTAGATTAGTAGATGCATCTAAGCAGGCAGCAGGAACTTTAAATTTTTTAAGTTCATGTCTATGACATG
1441 AACAATGTGTGGGATAATGTCATTAATATATCCTAAATTAACCTAAACGTATTTCACTAACTCTGGCTCCTTCTCCATAA
1521 AGCACATTTTAAGGAACAAGAATTGCTAAATATAAAAACATAAATAATACCATAATACATGGCTATCATCAAAAGTGTAT
1601 AGAATATTATAGTTTAAAAGTATTTAGTTGATTACTTTTCAGTTTTGTTTTGTTTTTTGAGACGGAGTCTCACTCTGTTG
1681 CCCAGGCTGGAGTGCAGTGGCACCATCTCAGTTCACTGCAACTTCTGCCTCCCGAGTTCAAGCGATTCTCCTGCCTCAGC
1761 CTCCCGAGTAGCTGGAATTATAGGCGTGCACCACCACGCCCAGCTAATTTTTGTATTTTTAGTAAAGACAGGGTTTTGCC
1841 ACATTAGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCACCCCAGCCTCCCAAAGTGCTAAGATTACAGGC
1921 GTGAGCCACTGAGCCCAGCCTACTTTTCAGTTTTTAACATAATTTTTGTTTTATCCACAACTTTTCAAGTATTGAAAGTA
2001 GAATAAAAACATGGGTTCTTAGTCTTTAGCTATCTGTTAAAGCCTATGAATGCCTTCTTAAAATCATGTTTTTAAATGCA
2081 TAAAATATATAGGATTACAAAGGAATCTAATTATATCGAAATACAGTTATTAAAATGTTAAAAGATAAGTTTGTTATATA
2161 TTAATATGCATGCTTCTTTATAAATGCATTAAATAAGAGTTAATAGCTATCCTAAATTTGAAATAGTGATAAGCATAATG
2241 AAAATAGATGCAAAAAACTAATGTGATATGAAAATATCTGGGTTTTTCTTTTGATGATGAAGTATTGCTAATATTACCGT
2321 GGTTTATGAACTATGTTCAGAATTGAAGAAAATCCTAACTTTCAGTTAGAGGTTAGTGACGGGGTTCAGGACACCCTACA
2401 CAAAATACAGCACTTTGACATATTGAATATTTTAAGCTGAAGGCATTTGAGGAAATTGCAGAAGCAGGAAGGTGACTCTG
2481 ACCTTCTGCCTGCTGTTCTCCCCAGAAGCAGCCATAAAACCTGGGAAGGATTTTCTGACCTTCCCCTGAAGTAGATCATA
2561 AGACTGTCATGTAAGAGGTGCTCTCCTGGCACCCAGAGAAAAGGAGCATCCTTACCTCCAAAAGCACAGGGACACAAAGA
2641 GGAATCTAAACAAACAGGCCTCTCAGTTTCCCCCAGTTTATTACATTTAGCTTGTTCACACTTTGCCCTATGACATTTCT
2721 ACATCACTGGCTGCTCTTCATCAAACCTACTATAAAAAACATTCAAGTTCAACTGTTTCTTTGGGCCTTTATTTCCTTAT
2801 GGAGCCCCTCGTGTCGTGTAAAACTTATATTAAATAAATGTGCATGCTTT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' guccGUGCCCUCGAGUCCACu 5'
              | |  || |||||||| 
Target 5' caaaCTCCTGACCTCAGGTGa 3'
1860 - 1880 153.00 -16.90
2
miRNA  3' guccgUGCCCUCGAGUCCacu 5'
               ||||| |:|||||   
Target 5' tagtgACGGG-GTTCAGGaca 3'
2374 - 2393 123.00 -20.32
3
miRNA  3' guccGUGCCCUCGAGUCCACu 5'
              :::|| | :|| |||| 
Target 5' taatTGTGGTA-TTCTGGTGa 3'
726 - 745 116.00 -12.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN7177087 6 COSMIC
COSN32053224 8 COSMIC
COSN31559022 23 COSMIC
COSN8636171 39 COSMIC
COSN30142372 43 COSMIC
COSN17159065 63 COSMIC
COSN30113929 79 COSMIC
COSN30527223 105 COSMIC
COSN24386514 145 COSMIC
COSN30530492 151 COSMIC
COSN30530500 152 COSMIC
COSN30173924 198 COSMIC
COSN8642054 288 COSMIC
COSN216743 790 COSMIC
COSN23430444 898 COSMIC
COSN25296178 987 COSMIC
COSN27641907 1556 COSMIC
COSN17202225 1663 COSMIC
COSN24471030 1735 COSMIC
COSN22372625 2628 COSMIC
COSN24974100 2657 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1008343358 4 dbSNP
rs748206909 18 dbSNP
rs866627817 25 dbSNP
rs954350953 26 dbSNP
rs776601769 28 dbSNP
rs1326687333 33 dbSNP
rs768760559 34 dbSNP
rs1227195716 35 dbSNP
rs1264871061 36 dbSNP
rs1380325289 39 dbSNP
rs367582792 40 dbSNP
rs1011769905 42 dbSNP
rs1163837043 49 dbSNP
rs1313626928 57 dbSNP
rs1286094287 58 dbSNP
rs887762178 62 dbSNP
rs1482148716 64 dbSNP
rs587745951 65 dbSNP
rs1027652433 67 dbSNP
rs1252376013 77 dbSNP
rs1226286355 86 dbSNP
rs1181497409 94 dbSNP
rs893401798 97 dbSNP
rs111323510 100 dbSNP
rs1435192436 108 dbSNP
rs993465708 108 dbSNP
rs186997930 110 dbSNP
rs56210936 111 dbSNP
rs113776715 114 dbSNP
rs1406286086 115 dbSNP
rs756789016 116 dbSNP
rs587687300 123 dbSNP
rs1292389006 129 dbSNP
rs1457871579 130 dbSNP
rs587636359 141 dbSNP
rs751018651 142 dbSNP
rs1300080173 144 dbSNP
rs1310231473 145 dbSNP
rs1161839781 147 dbSNP
rs1141835 148 dbSNP
rs1341416646 157 dbSNP
rs181875038 157 dbSNP
rs758325433 158 dbSNP
rs1489467479 159 dbSNP
rs752499667 161 dbSNP
rs1044983034 179 dbSNP
rs1453003463 182 dbSNP
rs1190956080 185 dbSNP
rs1391143804 193 dbSNP
rs1429732650 197 dbSNP
rs1167254114 209 dbSNP
rs1351117874 223 dbSNP
rs946654073 231 dbSNP
rs931197222 241 dbSNP
rs3208233 244 dbSNP
rs1365001027 245 dbSNP
rs1436787632 249 dbSNP
rs587683802 256 dbSNP
rs914901212 257 dbSNP
rs1364191064 262 dbSNP
rs1226092597 267 dbSNP
rs1291866532 275 dbSNP
rs919846312 277 dbSNP
rs972697687 278 dbSNP
rs934996463 281 dbSNP
rs961666023 283 dbSNP
rs1190622163 284 dbSNP
rs912601643 290 dbSNP
rs1449168822 296 dbSNP
rs375417744 298 dbSNP
rs11542002 306 dbSNP
rs1416526706 312 dbSNP
rs954182618 315 dbSNP
rs1028418200 322 dbSNP
rs1423921230 324 dbSNP
rs1011717723 328 dbSNP
rs976923309 329 dbSNP
rs1458551218 335 dbSNP
rs957578918 343 dbSNP
rs112354597 352 dbSNP
rs1387654157 359 dbSNP
rs1432574552 364 dbSNP
rs966225224 364 dbSNP
rs370630584 369 dbSNP
rs1227654650 370 dbSNP
rs1312166920 372 dbSNP
rs587753888 390 dbSNP
rs999156420 392 dbSNP
rs1243765700 395 dbSNP
rs1210822382 396 dbSNP
rs188466780 399 dbSNP
rs1464745377 401 dbSNP
rs1046093764 410 dbSNP
rs1328189220 412 dbSNP
rs1013725330 418 dbSNP
rs986344811 430 dbSNP
rs587611707 431 dbSNP
rs55667933 442 dbSNP
rs1027863797 445 dbSNP
rs1473253836 455 dbSNP
rs1054928667 464 dbSNP
rs1410722223 484 dbSNP
rs1398566080 485 dbSNP
rs993435944 501 dbSNP
rs897833491 514 dbSNP
rs1447284331 517 dbSNP
rs1310036658 518 dbSNP
rs1299994804 519 dbSNP
rs1230246957 525 dbSNP
rs1289251508 529 dbSNP
rs587657761 529 dbSNP
rs1222255586 535 dbSNP
rs1035094963 550 dbSNP
rs931143930 555 dbSNP
rs777083427 562 dbSNP
rs919794121 568 dbSNP
rs1036945892 580 dbSNP
rs1363342685 581 dbSNP
rs1217647662 584 dbSNP
rs1250399801 588 dbSNP
rs377667408 588 dbSNP
rs905020986 594 dbSNP
rs912539175 600 dbSNP
rs1044951961 605 dbSNP
rs1314822072 641 dbSNP
rs1171707165 651 dbSNP
rs946541445 662 dbSNP
rs587632006 666 dbSNP
rs587756062 668 dbSNP
rs932703826 678 dbSNP
rs934986336 682 dbSNP
rs1276772016 696 dbSNP
rs921350280 698 dbSNP
rs922290114 699 dbSNP
rs1278597285 702 dbSNP
rs990243782 710 dbSNP
rs1206486777 711 dbSNP
rs1345003563 711 dbSNP
rs148406315 729 dbSNP
rs1435496171 731 dbSNP
rs147370389 744 dbSNP
rs1246875686 749 dbSNP
rs1191555803 761 dbSNP
rs1376078401 768 dbSNP
rs978064390 770 dbSNP
rs879260826 775 dbSNP
rs1391758729 776 dbSNP
rs1175526563 777 dbSNP
rs879874348 796 dbSNP
rs1430394430 798 dbSNP
rs971686792 804 dbSNP
rs1395881274 806 dbSNP
rs1025039460 813 dbSNP
rs1325814307 818 dbSNP
rs910713827 819 dbSNP
rs750681321 820 dbSNP
rs56409713 836 dbSNP
rs894865718 837 dbSNP
rs142768900 841 dbSNP
rs1033423290 842 dbSNP
rs1270063617 847 dbSNP
rs1336904041 857 dbSNP
rs1211065040 858 dbSNP
rs995292191 860 dbSNP
rs1289931981 861 dbSNP
rs1450730608 861 dbSNP
rs1211422458 868 dbSNP
rs898311674 869 dbSNP
rs1464350530 876 dbSNP
rs1234480797 877 dbSNP
rs1243563068 881 dbSNP
rs1036894392 888 dbSNP
rs939902184 897 dbSNP
rs1201900400 898 dbSNP
rs1165126590 902 dbSNP
rs1391530832 903 dbSNP
rs891062794 924 dbSNP
rs1349435538 927 dbSNP
rs962049608 943 dbSNP
rs762423182 944 dbSNP
rs1051496520 947 dbSNP
rs1436206077 952 dbSNP
rs184119191 956 dbSNP
rs1035469254 961 dbSNP
rs1003621123 962 dbSNP
rs1284336747 977 dbSNP
rs1333517917 983 dbSNP
rs200492700 989 dbSNP
rs932676938 998 dbSNP
rs1231078937 1000 dbSNP
rs1269575796 1001 dbSNP
rs921298021 1011 dbSNP
rs1255036651 1014 dbSNP
rs969842176 1016 dbSNP
rs1023730217 1025 dbSNP
rs1308711943 1032 dbSNP
rs1259374528 1039 dbSNP
rs1300505729 1043 dbSNP
rs1010722945 1061 dbSNP
rs754588252 1063 dbSNP
rs1226863985 1064 dbSNP
rs1474890282 1066 dbSNP
rs1163075507 1071 dbSNP
rs1414411049 1078 dbSNP
rs587593563 1079 dbSNP
rs1365048595 1084 dbSNP
rs990175292 1085 dbSNP
rs587715058 1087 dbSNP
rs765507188 1092 dbSNP
rs1398374278 1098 dbSNP
rs1335363651 1099 dbSNP
rs1398146044 1103 dbSNP
rs1354295255 1107 dbSNP
rs1052341770 1109 dbSNP
rs1412339124 1113 dbSNP
rs1289649946 1117 dbSNP
rs1363236863 1118 dbSNP
rs56291655 1123 dbSNP
rs1329493536 1126 dbSNP
rs1237865269 1129 dbSNP
rs1258817075 1129 dbSNP
rs1400421244 1129 dbSNP
rs1200981360 1131 dbSNP
rs1302456982 1131 dbSNP
rs1462604315 1142 dbSNP
rs1372514235 1151 dbSNP
rs999873746 1171 dbSNP
rs900835120 1173 dbSNP
rs936117163 1176 dbSNP
rs1448797715 1181 dbSNP
rs924755038 1183 dbSNP
rs1158648264 1188 dbSNP
rs1385722781 1194 dbSNP
rs977637028 1197 dbSNP
rs1173706231 1200 dbSNP
rs1375415423 1218 dbSNP
rs942382213 1222 dbSNP
rs587631072 1227 dbSNP
rs972019132 1231 dbSNP
rs767807873 1245 dbSNP
rs992187721 1246 dbSNP
rs959027235 1247 dbSNP
rs1048145015 1248 dbSNP
rs1255094498 1256 dbSNP
rs1233646584 1270 dbSNP
rs930800054 1286 dbSNP
rs1033367430 1292 dbSNP
rs1207194680 1294 dbSNP
rs55954760 1307 dbSNP
rs1480962139 1314 dbSNP
rs898259493 1316 dbSNP
rs1015818245 1324 dbSNP
rs180727719 1325 dbSNP
rs962640698 1330 dbSNP
rs928243697 1348 dbSNP
rs982483143 1353 dbSNP
rs1394846881 1372 dbSNP
rs1433480182 1374 dbSNP
rs1004051340 1376 dbSNP
rs774554841 1381 dbSNP
rs1170960881 1383 dbSNP
rs188250233 1388 dbSNP
rs1461004245 1402 dbSNP
rs1296120265 1413 dbSNP
rs1392476883 1415 dbSNP
rs1203726173 1418 dbSNP
rs1302479282 1424 dbSNP
rs1368508217 1430 dbSNP
rs1342150034 1443 dbSNP
rs1285300826 1451 dbSNP
rs1298171361 1462 dbSNP
rs1308176154 1482 dbSNP
rs1051013850 1483 dbSNP
rs1247500450 1484 dbSNP
rs1249666986 1487 dbSNP
rs1489623077 1488 dbSNP
rs764553593 1489 dbSNP
rs763514753 1499 dbSNP
rs1252772402 1518 dbSNP
rs1023697517 1519 dbSNP
rs1191083643 1524 dbSNP
rs1011024091 1525 dbSNP
rs957841801 1527 dbSNP
rs1167760887 1560 dbSNP
rs1312396124 1569 dbSNP
rs1031294162 1573 dbSNP
rs999443795 1580 dbSNP
rs1392035631 1583 dbSNP
rs1436946920 1606 dbSNP
rs1320944723 1611 dbSNP
rs1306277957 1621 dbSNP
rs901052838 1627 dbSNP
rs932594401 1636 dbSNP
rs899830507 1645 dbSNP
rs1323512341 1646 dbSNP
rs1234149236 1653 dbSNP
rs587755816 1656 dbSNP
rs1366187510 1657 dbSNP
rs1006937439 1663 dbSNP
rs587698231 1664 dbSNP
rs1048111395 1672 dbSNP
rs1243030449 1677 dbSNP
rs1485858584 1684 dbSNP
rs931103734 1685 dbSNP
rs1415336596 1699 dbSNP
rs899332365 1707 dbSNP
rs936063103 1717 dbSNP
rs1367697829 1719 dbSNP
rs924721108 1726 dbSNP
rs1042242554 1728 dbSNP
rs1159641143 1731 dbSNP
rs777057876 1733 dbSNP
rs1428559091 1734 dbSNP
rs56091952 1735 dbSNP
rs1442453461 1736 dbSNP
rs768339836 1743 dbSNP
rs1415436152 1744 dbSNP
rs1473369772 1752 dbSNP
rs917442680 1757 dbSNP
rs587619777 1765 dbSNP
rs587762864 1766 dbSNP
rs928183573 1781 dbSNP
rs185378844 1784 dbSNP
rs958973893 1785 dbSNP
rs587626722 1786 dbSNP
rs1239674198 1797 dbSNP
rs926249787 1815 dbSNP
rs973754436 1816 dbSNP
rs1254758779 1831 dbSNP
rs948023126 1832 dbSNP
rs1177360168 1837 dbSNP
rs1265233228 1838 dbSNP
rs1398692835 1842 dbSNP
rs587756410 1856 dbSNP
rs962415948 1857 dbSNP
rs1178182632 1862 dbSNP
rs1376041294 1865 dbSNP
rs587700887 1866 dbSNP
rs1015351647 1872 dbSNP
rs1004404932 1878 dbSNP
rs1312409919 1881 dbSNP
rs1286673888 1885 dbSNP
rs955232273 1890 dbSNP
rs1280299815 1901 dbSNP
rs1373084183 1902 dbSNP
rs1029938559 1917 dbSNP
rs996689690 1918 dbSNP
rs899777980 1920 dbSNP
rs1054343351 1921 dbSNP
rs1210792521 1930 dbSNP
rs1385038925 1931 dbSNP
rs1483715913 1935 dbSNP
rs1182105389 1939 dbSNP
rs1231910778 1947 dbSNP
rs1468251751 1950 dbSNP
rs1192750631 1963 dbSNP
rs35549166 1973 dbSNP
rs903215168 1976 dbSNP
rs1458615359 1983 dbSNP
rs1409363897 1984 dbSNP
rs1411684179 1989 dbSNP
rs1041799554 1993 dbSNP
rs1354207711 2014 dbSNP
rs950200536 2017 dbSNP
rs1306175347 2020 dbSNP
rs1031093717 2022 dbSNP
rs978304637 2027 dbSNP
rs762465165 2035 dbSNP
rs374227676 2038 dbSNP
rs1195909838 2042 dbSNP
rs1271649991 2045 dbSNP
rs1006783090 2047 dbSNP
rs1055987846 2065 dbSNP
rs1196052408 2067 dbSNP
rs1253402237 2068 dbSNP
rs937554815 2077 dbSNP
rs1450410408 2078 dbSNP
rs1475683155 2090 dbSNP
rs1168618200 2092 dbSNP
rs770545477 2102 dbSNP
rs1418887044 2112 dbSNP
rs193263209 2117 dbSNP
rs896870254 2118 dbSNP
rs1440574079 2122 dbSNP
rs1324261396 2124 dbSNP
rs199546192 2126 dbSNP
rs962364312 2127 dbSNP
rs1036802412 2133 dbSNP
rs1269151779 2136 dbSNP
rs940826598 2138 dbSNP
rs1234766660 2139 dbSNP
rs1273375138 2143 dbSNP
rs1266520874 2144 dbSNP
rs1228035029 2145 dbSNP
rs1211631976 2149 dbSNP
rs1249640300 2151 dbSNP
rs202161705 2152 dbSNP
rs1447580126 2153 dbSNP
rs906731743 2154 dbSNP
rs3975894 2156 dbSNP
rs56303945 2156 dbSNP
rs781206057 2156 dbSNP
rs908244657 2156 dbSNP
rs55999253 2158 dbSNP
rs1276694130 2163 dbSNP
rs1418896860 2164 dbSNP
rs188941304 2166 dbSNP
rs587594366 2167 dbSNP
rs1321106463 2169 dbSNP
rs1029473515 2170 dbSNP
rs1318185132 2171 dbSNP
rs936660219 2173 dbSNP
rs923990794 2179 dbSNP
rs1293336726 2184 dbSNP
rs996637197 2187 dbSNP
rs1386212411 2188 dbSNP
rs1262275288 2200 dbSNP
rs1351055120 2203 dbSNP
rs1319602171 2204 dbSNP
rs1470002831 2208 dbSNP
rs1204500956 2226 dbSNP
rs1282013214 2226 dbSNP
rs963893750 2229 dbSNP
rs74743630 2231 dbSNP
rs777332995 2242 dbSNP
rs1190209011 2245 dbSNP
rs1258295301 2251 dbSNP
rs1000106333 2264 dbSNP
rs1475039639 2271 dbSNP
rs1170359610 2272 dbSNP
rs1185999982 2275 dbSNP
rs1365931723 2294 dbSNP
rs1477404762 2300 dbSNP
rs903163660 2308 dbSNP
rs587662531 2319 dbSNP
rs1019480437 2334 dbSNP
rs985335843 2335 dbSNP
rs1313018574 2352 dbSNP
rs953929619 2353 dbSNP
rs1412552519 2361 dbSNP
rs587608073 2365 dbSNP
rs1189747117 2366 dbSNP
rs1466598233 2367 dbSNP
rs866567397 2375 dbSNP
rs895908584 2381 dbSNP
rs1055935209 2384 dbSNP
rs995109718 2394 dbSNP
rs1485354525 2401 dbSNP
rs937502333 2406 dbSNP
rs750134883 2407 dbSNP
rs1037955833 2408 dbSNP
rs1002650149 2416 dbSNP
rs940963906 2417 dbSNP
rs1181605721 2419 dbSNP
rs908173756 2423 dbSNP
rs1362409103 2424 dbSNP
rs982873671 2426 dbSNP
rs933714884 2429 dbSNP
rs922363260 2443 dbSNP
rs1344373451 2455 dbSNP
rs1432278296 2467 dbSNP
rs1299352976 2473 dbSNP
rs906691478 2475 dbSNP
rs1390446343 2483 dbSNP
rs200902062 2485 dbSNP
rs371407351 2486 dbSNP
rs199939634 2487 dbSNP
rs55960943 2488 dbSNP
rs56363548 2488 dbSNP
rs766655477 2488 dbSNP
rs1234950980 2490 dbSNP
rs895363097 2495 dbSNP
rs1054060128 2502 dbSNP
rs1296619860 2514 dbSNP
rs587653071 2524 dbSNP
rs1231214974 2535 dbSNP
rs963841416 2537 dbSNP
rs1253129802 2539 dbSNP
rs1481116592 2545 dbSNP
rs936640730 2566 dbSNP
rs1032827901 2569 dbSNP
rs748874096 2570 dbSNP
rs1448468721 2571 dbSNP
rs587699541 2574 dbSNP
rs978634278 2577 dbSNP
rs371014245 2578 dbSNP
rs587721154 2583 dbSNP
rs587637029 2587 dbSNP
rs367838257 2590 dbSNP
rs1373144906 2592 dbSNP
rs1461174145 2598 dbSNP
rs895867125 2607 dbSNP
rs113003008 2610 dbSNP
rs1034426668 2639 dbSNP
rs953897362 2646 dbSNP
rs1324941072 2647 dbSNP
rs919815981 2651 dbSNP
rs1001659668 2657 dbSNP
rs1451884756 2663 dbSNP
rs899313409 2664 dbSNP
rs1216244082 2667 dbSNP
rs1388795215 2672 dbSNP
rs1188390716 2675 dbSNP
rs1037886938 2681 dbSNP
rs973990914 2686 dbSNP
rs1337181794 2690 dbSNP
rs1214760430 2691 dbSNP
rs1252744513 2693 dbSNP
rs940929000 2710 dbSNP
rs886692143 2711 dbSNP
rs1261831011 2714 dbSNP
rs1046692495 2720 dbSNP
rs587767326 2722 dbSNP
rs1168140555 2725 dbSNP
rs1419628435 2731 dbSNP
rs1239484215 2734 dbSNP
rs961316444 2736 dbSNP
rs752960817 2737 dbSNP
rs1392015323 2740 dbSNP
rs933641974 2744 dbSNP
rs1015299108 2748 dbSNP
rs56388345 2753 dbSNP
rs975112016 2760 dbSNP
rs1381761697 2763 dbSNP
rs1022726035 2767 dbSNP
rs1275454497 2767 dbSNP
rs778651001 2768 dbSNP
rs1357660652 2775 dbSNP
rs925762326 2777 dbSNP
rs979022644 2783 dbSNP
rs118104883 2786 dbSNP
rs1320228208 2796 dbSNP
rs1340041808 2798 dbSNP
rs1273825457 2799 dbSNP
rs1136808 2805 dbSNP
rs1261789546 2806 dbSNP
rs1485810581 2810 dbSNP
rs992794719 2811 dbSNP
rs1190939754 2815 dbSNP
rs960027279 2816 dbSNP
rs1054021205 2819 dbSNP
rs1034374323 2824 dbSNP
rs1411376470 2827 dbSNP
rs185277973 2828 dbSNP
rs899266025 2829 dbSNP
rs368966396 2832 dbSNP
rs1042357517 2834 dbSNP
rs944038417 2836 dbSNP
rs1377279282 2839 dbSNP
rs912624542 2839 dbSNP
rs1016401845 2840 dbSNP
rs1427243608 2842 dbSNP
rs1049812648 2846 dbSNP
rs1005469185 2851 dbSNP
rs1170335642 2852 dbSNP
rs1316906313 2854 dbSNP
rs886643546 2858 dbSNP
rs7540874 2859 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' guccGUGCCCUCGAGUCcacu 5'
              | |  || |||||    
Target 5' caaaCUCCUGACCUCAG---- 3'
17 - 33
2
miRNA  3' guccgugcccucgaGUCCacu 5'
                        ||||   
Target 5' ---------uuagcCAGGcug 3'
1 - 12
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000368985.3 | 3UTR | UUAGCCAGGCUGGUCUCAAACUCCUGACCUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
THCA -0.053 0.46 -0.214 0.32 7 Click to see details
THCA -0.053 0.46 -0.214 0.32 7 Click to see details
THCA -0.053 0.46 -0.214 0.32 7 Click to see details
THCA -0.053 0.46 -0.214 0.32 7 Click to see details
THCA -0.053 0.46 -0.214 0.32 7 Click to see details
THCA -0.053 0.46 -0.214 0.32 7 Click to see details
102 hsa-miR-3622b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT076713 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT080212 PRKACB protein kinase cAMP-activated catalytic subunit beta 2 2
MIRT081398 GTPBP3 GTP binding protein 3, mitochondrial 2 2
MIRT107158 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT254071 BACH1 BTB domain and CNC homolog 1 2 2
MIRT409790 FOXO3 forkhead box O3 2 2
MIRT448679 MAPK9 mitogen-activated protein kinase 9 2 2
MIRT450206 ABHD15 abhydrolase domain containing 15 2 2
MIRT486621 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT489267 TTLL1 tubulin tyrosine ligase like 1 2 2
MIRT493117 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 4
MIRT494570 BAK1 BCL2 antagonist/killer 1 2 2
MIRT497395 RALY RALY heterogeneous nuclear ribonucleoprotein 2 2
MIRT504900 CCDC86 coiled-coil domain containing 86 2 2
MIRT505192 USP46 ubiquitin specific peptidase 46 2 4
MIRT506522 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 6
MIRT508162 ABCC5 ATP binding cassette subfamily C member 5 2 8
MIRT508545 PARVG parvin gamma 2 4
MIRT509850 BIRC5 baculoviral IAP repeat containing 5 2 6
MIRT510088 PPWD1 peptidylprolyl isomerase domain and WD repeat containing 1 2 8
MIRT512094 CRK CRK proto-oncogene, adaptor protein 2 4
MIRT515381 RPL7 ribosomal protein L7 2 2
MIRT519176 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT519964 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT522292 NKAP NFKB activating protein 2 2
MIRT523160 HMGB2 high mobility group box 2 2 4
MIRT525314 FANCA Fanconi anemia complementation group A 2 2
MIRT528194 PLEKHM2 pleckstrin homology and RUN domain containing M2 2 2
MIRT532885 ZNF451 zinc finger protein 451 2 2
MIRT538209 CYR61 cysteine rich angiogenic inducer 61 2 2
MIRT539497 ACTN4 actinin alpha 4 2 2
MIRT554600 RRAGC Ras related GTP binding C 2 2
MIRT562444 DCTN6 dynactin subunit 6 2 2
MIRT562748 AOC3 amine oxidase, copper containing 3 2 2
MIRT565798 SEC14L5 SEC14 like lipid binding 5 2 2
MIRT565838 SCML2 Scm polycomb group protein like 2 2 2
MIRT566072 RCC2 regulator of chromosome condensation 2 2 2
MIRT566104 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 2
MIRT572407 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT576198 Vsig2 V-set and immunoglobulin domain containing 2 2 2
MIRT576313 Acbd7 acyl-Coenzyme A binding domain containing 7 2 2
MIRT576651 Mill2 MHC I like leukocyte 2 1 1
MIRT576859 Socs6 suppressor of cytokine signaling 6 2 2
MIRT606819 BICD2 BICD cargo adaptor 2 2 2
MIRT610738 NUDT16 nudix hydrolase 16 2 4
MIRT614798 RORA RAR related orphan receptor A 2 2
MIRT619006 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1 2 2
MIRT619420 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT620405 MYO1H myosin IH 2 2
MIRT624869 ABHD13 abhydrolase domain containing 13 2 2
MIRT633527 ZFP30 ZFP30 zinc finger protein 2 2
MIRT633927 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT636611 CLIC5 chloride intracellular channel 5 2 2
MIRT640616 MIOX myo-inositol oxygenase 2 2
MIRT642605 C14orf180 chromosome 14 open reading frame 180 2 2
MIRT644624 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT655113 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT658976 DNAJB5 DnaJ heat shock protein family (Hsp40) member B5 2 4
MIRT661495 CHMP1B charged multivesicular body protein 1B 2 2
MIRT662996 TMEM59 transmembrane protein 59 2 2
MIRT663075 SFR1 SWI5 dependent homologous recombination repair protein 1 2 2
MIRT665405 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT666106 SSR1 signal sequence receptor subunit 1 2 2
MIRT669562 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT670070 ZNF783 zinc finger family member 783 2 2
MIRT671192 ZNF891 zinc finger protein 891 2 2
MIRT675361 KLHL26 kelch like family member 26 2 2
MIRT678857 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT679443 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT684163 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT684543 ZNF460 zinc finger protein 460 2 2
MIRT684674 SLC2A11 solute carrier family 2 member 11 2 2
MIRT684971 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT686006 NEK4 NIMA related kinase 4 2 2
MIRT687758 KIAA1328 KIAA1328 2 2
MIRT688961 ATXN3 ataxin 3 2 2
MIRT689409 UQCR11 ubiquinol-cytochrome c reductase, complex III subunit XI 2 2
MIRT690001 MMP17 matrix metallopeptidase 17 2 2
MIRT690165 ELP3 elongator acetyltransferase complex subunit 3 2 2
MIRT690202 C5orf45 MRN complex interacting protein 2 2
MIRT690477 ZNF33A zinc finger protein 33A 2 2
MIRT690566 MICA MHC class I polypeptide-related sequence A 2 2
MIRT692160 C10orf111 chromosome 10 open reading frame 111 2 2
MIRT693430 PLGLB2 plasminogen-like B2 2 2
MIRT693547 ZNF708 zinc finger protein 708 2 2
MIRT693697 PLGLB1 plasminogen-like B1 2 2
MIRT695006 HSPA6 heat shock protein family A (Hsp70) member 6 2 2
MIRT698525 TFRC transferrin receptor 2 2
MIRT699574 SIKE1 suppressor of IKBKE 1 2 2
MIRT703446 FYTTD1 forty-two-three domain containing 1 2 2
MIRT704397 CTSS cathepsin S 2 2
MIRT704485 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT709822 STPG1 sperm tail PG-rich repeat containing 1 2 2
MIRT710859 COQ7 coenzyme Q7, hydroxylase 2 2
MIRT711893 INSIG2 insulin induced gene 2 2 2
MIRT713796 CPLX2 complexin 2 2 2
MIRT718800 C1GALT1C1 C1GALT1 specific chaperone 1 2 2
MIRT719501 SEC24B SEC24 homolog B, COPII coat complex component 2 2
MIRT719722 PDE6B phosphodiesterase 6B 2 2
MIRT722204 URM1 ubiquitin related modifier 1 2 2
MIRT723523 CLPTM1L CLPTM1 like 2 2
MIRT725471 GRAP2 GRB2-related adaptor protein 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3622b-3p Platinum 23939 sensitive tissue
hsa-miR-3622b-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3622b-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-3622b-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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