pre-miRNA Information
pre-miRNA hsa-mir-2115   
Genomic Coordinates chr3: 48316360 - 48316459
Description Homo sapiens miR-2115 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-2115-5p
Sequence 21| AGCUUCCAUGACUCCUGAUGGA |42
Evidence Experimental
Experiments 454
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs372327506 9 dbSNP
rs1259362191 10 dbSNP
rs1215292065 12 dbSNP
rs1197671843 16 dbSNP
rs1468768022 20 dbSNP
rs1273755407 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CTNNBIP1   
Synonyms ICAT
Description catenin beta interacting protein 1
Transcript NM_001012329   
Other Transcripts NM_020248   
Expression
Putative miRNA Targets on CTNNBIP1
3'UTR of CTNNBIP1
(miRNA target sites are highlighted)
>CTNNBIP1|NM_001012329|3'UTR
   1 CTGCAAAGCCCTTGGAACACCCTGGATGCTGTTGAGGGCCAAGAGATCTGTGTGGCTCCTGGGCCGGCTGAGTGGCAGCA
  81 GCCCCCCTTGCCCCACCTCCCCCTTCCCCTACCCAACCCTGCCCTGCCCCACCCCACCTCACAGCTACTCAGTGGGGCTG
 161 GCATCAAGGGAGACACCAGTGGTGCGTTTATAATTGGCTTAAAGGGATGGACTTGTGATTGGCTGCAGGAAGAAACTTTT
 241 TTATTTTTTAAATCTTGACCAACAGAAACCTTTTATTTTTATTTCTGACTCTTATTTTTTAAAAAATTTGCGCCTCGGTA
 321 TCTGGCTTCCCTGGAAGCTCTCCGAGCTCTGGTGCTTTAGTTAGGTCATTTTTTTAGAAATGTGAAGAGGTCTGATTGGC
 401 TGCTTAAACTGGAAAGGATCTGTGATTGGCTGGTTAATGGGAAACGGTTTTTTTCTTTGGCTGCAGGTGTTCTGCTGATA
 481 TCAACAGCTTCCCTATTTTGAATGCAGAAAACAGGGTCTGGGACATTAGTCGTTATATTTGACTTGAAAAGAAAGAAACC
 561 AAGTGCGCTTTGCAATATTTATTACACAAAGAACTTGCTGCTGCCTTCACATTTGGGGTTTGTGTTTGATTGGCTTTCGA
 641 TGCGTGTGTTTGGTTTCCCATTGGTTCACCTGTGACTCCTGTTGCCATGGATTCACCCCCCTCTGCTGCCGGCTCTGGGC
 721 CTGAGGGTCCACCTGGAGAGTACATTTGCTTTAATGAGTGCACCTGCCTCCACCAGCAAGGGGACCCCGAGAACCCTGAG
 801 CAGGGTCCACAGCTGGAAAGTTGGGCCCCTGAGGAGCTTTGTGTCGTCTTGAACGAGCAGCCCAGGGCCTAGAGGTAACC
 881 GTTAGGCGGGATTTATGTGCACTGCCTGCATGAGCTGGCAACCAGCCAGCGTCCCTTGGTGAGAAAGGGATTGCTGAGGC
 961 ACCGTCCAGGCCCCACCGGCCAGGCCGCGCCCAGCAGAGGCGTACTACCCAGCTCTGTCCTCTTGGCCATCCTTCTGTGT
1041 ACCACTTCCTGAGGCCTCATTTTGGGGGTCATCTTGGAAAGGGGAGGAGCTTCTCCCAGTGTGAGACCCCAAAGACTCTG
1121 GAGGTCATCTGGCGGAGGTCTCTGGGAGCCCAGAACCCACATAAAAGCCCCAGCTTGGCTCACAAGGCCCAGGAGACCTC
1201 CAGCTAAACACCAACCCCTGACCTACCCCAGCCAGGCTCCTACCTGTCTGCTGCCAGCACAGTAGGTCCCGGCCAGCTCT
1281 GGAGTTCTCTCATCGGAGGCCCATGCCCTCCACTCCACTGCCTTTGGAAGGGTCTCTCTCCAGGTCAGCCTGGAAGGGAC
1361 AGTATCGTTTGTTTATGAAATGCCACTGGGACAGCTGGCTGGGCCTTCACCAAGCAAGTCCCTTCAGACTGGCCCTTAAG
1441 CCAAACTCAGGCCCAGAATTGCAGTTCAGAATGGCAGTCCTGGAGGCAGGGGGTGAGGGGCAGGTCTAGTGTTCCTGCAC
1521 CAAACCTAAGTCCTTCCACCTGCCACCCCCTTCCCTGGGAGGGAGGTGGTCCTCCTATCTCCCTGGCTCACTGGCAGGTG
1601 TGGGATCTGGGGAGAGCGGCTGGAGAAAGATGCAGTCCTCAGGAAGGGGGCCGCCACCCTCCCCTATGCTGGTAGATGCT
1681 GAGGCCCCTAGGTGCCCAGGGCCAGTGGGACCCTCTCAGAACCAAATCTTTCCCCTTTCTCGGGGCTTGGGGCTCGGGCC
1761 GTAGGGGCTCCTGAGTGTCATGAAGTGCACAGGAGCCAAATGACCGAGCCCTGGAGAGCCCCATGGTGGGTAGGTGGTTC
1841 GTGCTGTGCTCTGGCACCATCAGCCTGTTCCAGAAGGAGGATTCGAGCATCAGGCTAAGACCCTGTGTCCTCCACCATGC
1921 ACTCACCCCTAGCCCTGGTTAGCTGACAGTCAGCTGTGGGGAACACAGCTACAACCCTACCCTGGCAGGGACCTGAGAGC
2001 ATCTCAGGAGGGGCAGCGCATGTGTGCATGTGCTGTGTGAGTGAGCACACCCGTGTGCACACTCATACACATGTGCACAC
2081 ACACGCACTCTCCCCGCTCAGGGGCCTGGAGGTCTGGCTGAGCCCCTGGGGAAAGGTGAGTTCTTTCATCTCCCTCCTCC
2161 AGGTCGGAGTGCCTGGAGTCAGGTGTCGAGGCCACATTGCTGGCTGCCCCCTCTTTGTAGCTCCTATAAAGGGCCCACAC
2241 CTGGTGGATACCTGGTTGAGTGTGTGGTCTCTGCCCCAGCCTGTCCTTGTCACGATCACAGGCCTTGCTTTTGTAACAAT
2321 GATGACCCCGGCCTGTCTCATCTTCTGAAGAGGAAAAGTCAAAGTGTTGCTGTGGCTCCATATTTCAACTAAAAATATAT
2401 CTGTTGGAGAAAGAAATTAACAATAAAGAATTTTCATAGGTT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agGUAGUCCUCA-GUACCUUCGa 5'
            :||| ||  | | ||||||| 
Target 5' ggTATCTGGCTTCCCTGGAAGCt 3'
317 - 339 156.00 -16.40
2
miRNA  3' aggUAGUCCUCAGUACCUUCGa 5'
             | ::| |||| ||||:|| 
Target 5' cagAATGGCAGTCCTGGAGGCa 3'
1467 - 1488 147.00 -15.30
3
miRNA  3' agGUAGUCC----UCAG-UACCUUCGa 5'
            |||| ||    :|||  |||:||| 
Target 5' gtCATCTGGCGGAGGTCTCTGGGAGCc 3'
1124 - 1150 142.00 -19.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN1110738 4 COSMIC
COSN8862539 30 COSMIC
COSN1110737 31 COSMIC
COSN30120332 45 COSMIC
COSN1110736 56 COSMIC
COSN30147855 70 COSMIC
COSN24368665 88 COSMIC
COSN30488604 97 COSMIC
COSN30474386 106 COSMIC
COSN31508587 152 COSMIC
COSN25066727 426 COSMIC
COSN24576451 444 COSMIC
COSN19663127 447 COSMIC
COSN31595846 661 COSMIC
COSN6954417 711 COSMIC
COSN31556575 715 COSMIC
COSN8523952 720 COSMIC
COSN31543152 776 COSMIC
COSN31551933 788 COSMIC
COSN5380313 799 COSMIC
COSN6052091 846 COSMIC
COSN20204550 853 COSMIC
COSN6954415 931 COSMIC
COSN25827441 1692 COSMIC
COSN17194982 1717 COSMIC
COSN16362923 1828 COSMIC
COSN8147288 1840 COSMIC
COSN6527193 1927 COSMIC
COSN7472618 2011 COSMIC
COSN24370231 2275 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1274090967 1 dbSNP
rs113027301 3 dbSNP
rs373179340 5 dbSNP
rs754179973 8 dbSNP
rs987808290 10 dbSNP
rs1202897614 13 dbSNP
rs766768927 15 dbSNP
rs760976891 18 dbSNP
rs975383729 19 dbSNP
rs1319713864 20 dbSNP
rs369489912 26 dbSNP
rs189391503 30 dbSNP
rs1032382780 44 dbSNP
rs761882711 46 dbSNP
rs774359167 47 dbSNP
rs1003550049 51 dbSNP
rs1171981183 57 dbSNP
rs1442133627 58 dbSNP
rs1423664561 59 dbSNP
rs377055537 65 dbSNP
rs1478522707 69 dbSNP
rs569310075 83 dbSNP
rs902606149 84 dbSNP
rs1246813938 86 dbSNP
rs1003819864 88 dbSNP
rs1270805791 88 dbSNP
rs1286171853 88 dbSNP
rs1186283158 90 dbSNP
rs906331138 95 dbSNP
rs1023678566 98 dbSNP
rs1132236 101 dbSNP
rs551258210 102 dbSNP
rs1253416880 104 dbSNP
rs369035775 104 dbSNP
rs1021040669 108 dbSNP
rs1208997370 109 dbSNP
rs1340091092 115 dbSNP
rs71643073 117 dbSNP
rs775625614 130 dbSNP
rs896715059 130 dbSNP
rs1175907250 131 dbSNP
rs1049177279 133 dbSNP
rs562129487 134 dbSNP
rs1477325794 136 dbSNP
rs1002484956 139 dbSNP
rs898145258 142 dbSNP
rs897832066 145 dbSNP
rs1481957661 147 dbSNP
rs1255367276 148 dbSNP
rs1210684377 149 dbSNP
rs1313847809 150 dbSNP
rs1296886707 152 dbSNP
rs769691258 156 dbSNP
rs1433213522 157 dbSNP
rs1038045953 161 dbSNP
rs1040266199 175 dbSNP
rs111405549 178 dbSNP
rs939725317 186 dbSNP
rs1377002245 190 dbSNP
rs1302807150 193 dbSNP
rs908309146 207 dbSNP
rs1050886588 211 dbSNP
rs1324661545 231 dbSNP
rs1386553949 237 dbSNP
rs1052434 243 dbSNP
rs1389278003 243 dbSNP
rs893822125 251 dbSNP
rs1423917172 268 dbSNP
rs1172025161 271 dbSNP
rs1421582361 281 dbSNP
rs1462884018 286 dbSNP
rs1181909745 295 dbSNP
rs540264127 298 dbSNP
rs910370318 301 dbSNP
rs1050253189 302 dbSNP
rs946468585 306 dbSNP
rs1197783722 307 dbSNP
rs528446260 311 dbSNP
rs141822086 312 dbSNP
rs545885327 313 dbSNP
rs1320118694 314 dbSNP
rs772091568 315 dbSNP
rs1395279766 317 dbSNP
rs577779264 318 dbSNP
rs1449644823 320 dbSNP
rs925241390 324 dbSNP
rs746352985 325 dbSNP
rs1401436298 340 dbSNP
rs972086200 342 dbSNP
rs1023136698 343 dbSNP
rs966742842 347 dbSNP
rs1013050778 350 dbSNP
rs952197903 351 dbSNP
rs180922155 354 dbSNP
rs1164940390 357 dbSNP
rs112637865 365 dbSNP
rs1252336726 376 dbSNP
rs1021009781 382 dbSNP
rs1027712138 399 dbSNP
rs994005177 406 dbSNP
rs1177877128 409 dbSNP
rs1458071483 417 dbSNP
rs200614855 418 dbSNP
rs72633900 418 dbSNP
rs935072 419 dbSNP
rs386628372 420 dbSNP
rs1226251851 421 dbSNP
rs1376723527 434 dbSNP
rs557465830 439 dbSNP
rs1350404168 440 dbSNP
rs1222420855 445 dbSNP
rs1361622257 450 dbSNP
rs1275643478 455 dbSNP
rs1002832915 461 dbSNP
rs1378273110 462 dbSNP
rs898747436 466 dbSNP
rs1038419210 478 dbSNP
rs1232732135 480 dbSNP
rs533815901 492 dbSNP
rs1329712352 496 dbSNP
rs1003894241 506 dbSNP
rs1426026660 507 dbSNP
rs886802693 515 dbSNP
rs1008806196 525 dbSNP
rs1440303969 527 dbSNP
rs1365459599 530 dbSNP
rs889073629 534 dbSNP
rs1196490741 535 dbSNP
rs1432326684 536 dbSNP
rs1050812703 537 dbSNP
rs1266972478 537 dbSNP
rs1284036759 541 dbSNP
rs1490894276 541 dbSNP
rs1410994739 544 dbSNP
rs933767567 555 dbSNP
rs1305684288 556 dbSNP
rs1262942512 562 dbSNP
rs1436037337 564 dbSNP
rs921090536 566 dbSNP
rs566462998 567 dbSNP
rs1301578914 568 dbSNP
rs946519434 572 dbSNP
rs1171654425 574 dbSNP
rs1476800832 584 dbSNP
rs867015386 590 dbSNP
rs1337930956 601 dbSNP
rs1297117822 605 dbSNP
rs147882435 611 dbSNP
rs1387066943 615 dbSNP
rs1170693269 622 dbSNP
rs1465388736 625 dbSNP
rs1378033508 632 dbSNP
rs1201293879 633 dbSNP
rs1261292213 641 dbSNP
rs925911954 644 dbSNP
rs1447593722 649 dbSNP
rs1472254110 653 dbSNP
rs979814683 654 dbSNP
rs1052111126 660 dbSNP
rs35885091 660 dbSNP
rs966670375 665 dbSNP
rs935099755 672 dbSNP
rs146324966 676 dbSNP
rs982219996 685 dbSNP
rs72855797 691 dbSNP
rs1277116405 697 dbSNP
rs916131417 698 dbSNP
rs1279336015 700 dbSNP
rs1200124140 701 dbSNP
rs1343073931 703 dbSNP
rs1402810644 710 dbSNP
rs1002393117 711 dbSNP
rs963257677 714 dbSNP
rs991752286 718 dbSNP
rs1170174363 736 dbSNP
rs1475799755 740 dbSNP
rs1374902358 750 dbSNP
rs952166740 760 dbSNP
rs550859117 762 dbSNP
rs1286988001 763 dbSNP
rs1017171984 765 dbSNP
rs1244217013 767 dbSNP
rs1417101962 768 dbSNP
rs1340557930 771 dbSNP
rs1456682178 774 dbSNP
rs1257067586 776 dbSNP
rs1332888452 777 dbSNP
rs1027846860 782 dbSNP
rs1281983775 787 dbSNP
rs529474945 788 dbSNP
rs867973605 789 dbSNP
rs751231607 791 dbSNP
rs1338552710 798 dbSNP
rs796757283 803 dbSNP
rs568442424 804 dbSNP
rs1159688982 806 dbSNP
rs1456492640 816 dbSNP
rs534410604 817 dbSNP
rs754217981 819 dbSNP
rs1018941758 820 dbSNP
rs1161539311 824 dbSNP
rs997901184 828 dbSNP
rs1238144727 829 dbSNP
rs899587011 831 dbSNP
rs1039920114 836 dbSNP
rs935863267 842 dbSNP
rs1286606147 844 dbSNP
rs1009276541 845 dbSNP
rs1238008068 846 dbSNP
rs74498037 849 dbSNP
rs889125631 855 dbSNP
rs904385336 857 dbSNP
rs867283694 858 dbSNP
rs1010797084 859 dbSNP
rs946008810 863 dbSNP
rs1317112134 867 dbSNP
rs893624019 875 dbSNP
rs543046073 880 dbSNP
rs528506938 881 dbSNP
rs1235714016 883 dbSNP
rs1357617149 886 dbSNP
rs1052727836 887 dbSNP
rs1283146744 888 dbSNP
rs1445137558 890 dbSNP
rs1327886156 891 dbSNP
rs61785226 892 dbSNP
rs1165526680 906 dbSNP
rs935087531 911 dbSNP
rs1418474378 912 dbSNP
rs992119998 914 dbSNP
rs1320821680 922 dbSNP
rs1178147455 929 dbSNP
rs906234978 931 dbSNP
rs1244640968 943 dbSNP
rs779597810 950 dbSNP
rs1197668951 955 dbSNP
rs1046154601 958 dbSNP
rs778163749 963 dbSNP
rs564100484 964 dbSNP
rs1017557859 965 dbSNP
rs545897487 972 dbSNP
rs951616768 974 dbSNP
rs530882582 977 dbSNP
rs991719709 978 dbSNP
rs1346377012 980 dbSNP
rs1305111185 982 dbSNP
rs562722641 986 dbSNP
rs184024545 987 dbSNP
rs1000377762 989 dbSNP
rs1423553797 992 dbSNP
rs757889580 1001 dbSNP
rs544115643 1002 dbSNP
rs1270587884 1007 dbSNP
rs752832427 1009 dbSNP
rs1190884362 1012 dbSNP
rs962241513 1025 dbSNP
rs1215919833 1027 dbSNP
rs1019414698 1030 dbSNP
rs750324241 1031 dbSNP
rs1310343753 1036 dbSNP
rs1277724321 1037 dbSNP
rs945925866 1038 dbSNP
rs987588876 1039 dbSNP
rs1227042503 1044 dbSNP
rs1324536753 1049 dbSNP
rs7539650 1055 dbSNP
rs1297639709 1072 dbSNP
rs1028974626 1081 dbSNP
rs759524669 1091 dbSNP
rs1433562133 1095 dbSNP
rs1357915934 1096 dbSNP
rs1336563247 1099 dbSNP
rs1470469652 1100 dbSNP
rs939341573 1112 dbSNP
rs1227237844 1114 dbSNP
rs1427522902 1116 dbSNP
rs1010767285 1124 dbSNP
rs893758448 1127 dbSNP
rs561939430 1129 dbSNP
rs1204070453 1132 dbSNP
rs1462452661 1133 dbSNP
rs1265269289 1134 dbSNP
rs910017975 1138 dbSNP
rs1296462252 1140 dbSNP
rs1216400029 1143 dbSNP
rs999732869 1144 dbSNP
rs1336582829 1145 dbSNP
rs1453876963 1146 dbSNP
rs906379940 1149 dbSNP
rs982951078 1162 dbSNP
rs1046546853 1168 dbSNP
rs947808189 1171 dbSNP
rs1392138471 1174 dbSNP
rs192064932 1176 dbSNP
rs1421480157 1183 dbSNP
rs1384553854 1189 dbSNP
rs1184091561 1191 dbSNP
rs765097366 1203 dbSNP
rs1236190812 1207 dbSNP
rs1029933958 1212 dbSNP
rs930876461 1216 dbSNP
rs977031557 1236 dbSNP
rs1449148393 1242 dbSNP
rs572877018 1245 dbSNP
rs972354001 1246 dbSNP
rs940828183 1249 dbSNP
rs912084172 1268 dbSNP
rs1220394 1270 dbSNP
rs1489016785 1271 dbSNP
rs1307612530 1273 dbSNP
rs968883314 1276 dbSNP
rs530753443 1281 dbSNP
rs753621893 1282 dbSNP
rs539534137 1289 dbSNP
rs1020049610 1292 dbSNP
rs761614402 1294 dbSNP
rs72855794 1295 dbSNP
rs142468608 1302 dbSNP
rs958038859 1313 dbSNP
rs1419392238 1314 dbSNP
rs1001895231 1317 dbSNP
rs749548153 1328 dbSNP
rs1305157013 1332 dbSNP
rs1291203036 1341 dbSNP
rs760386136 1341 dbSNP
rs1223313415 1348 dbSNP
rs1362225816 1349 dbSNP
rs1219388715 1356 dbSNP
rs1284427216 1357 dbSNP
rs774989929 1361 dbSNP
rs535722197 1366 dbSNP
rs568305667 1367 dbSNP
rs1272818427 1395 dbSNP
rs1024835850 1398 dbSNP
rs546900597 1406 dbSNP
rs1011993524 1408 dbSNP
rs894934688 1410 dbSNP
rs867212477 1411 dbSNP
rs1048173802 1412 dbSNP
rs1358564938 1416 dbSNP
rs1429186808 1422 dbSNP
rs1454149177 1432 dbSNP
rs1365372565 1433 dbSNP
rs1369014281 1436 dbSNP
rs1173678505 1479 dbSNP
rs1479616504 1486 dbSNP
rs1178506367 1489 dbSNP
rs995139420 1490 dbSNP
rs1433942118 1494 dbSNP
rs77912137 1495 dbSNP
rs1490845849 1500 dbSNP
rs570535202 1504 dbSNP
rs745340884 1508 dbSNP
rs930116057 1509 dbSNP
rs1253158892 1510 dbSNP
rs774954788 1514 dbSNP
rs1051916112 1515 dbSNP
rs964681501 1516 dbSNP
rs932067101 1518 dbSNP
rs921981751 1520 dbSNP
rs978850662 1522 dbSNP
rs1316991987 1526 dbSNP
rs771516048 1531 dbSNP
rs796370320 1546 dbSNP
rs1387041275 1547 dbSNP
rs958254303 1549 dbSNP
rs1177362885 1558 dbSNP
rs959862347 1560 dbSNP
rs1225231708 1568 dbSNP
rs552256947 1571 dbSNP
rs1192549950 1572 dbSNP
rs1287640242 1574 dbSNP
rs1407843593 1575 dbSNP
rs111697805 1577 dbSNP
rs1461112499 1581 dbSNP
rs1263407787 1586 dbSNP
rs978401126 1589 dbSNP
rs1269146801 1590 dbSNP
rs942453413 1599 dbSNP
rs185610184 1607 dbSNP
rs970701179 1609 dbSNP
rs909611921 1613 dbSNP
rs1045049169 1616 dbSNP
rs548651926 1617 dbSNP
rs1406591996 1618 dbSNP
rs984233041 1624 dbSNP
rs1012046014 1638 dbSNP
rs190230050 1641 dbSNP
rs561816934 1646 dbSNP
rs1471114327 1649 dbSNP
rs74695392 1652 dbSNP
rs1413086756 1653 dbSNP
rs1026708240 1666 dbSNP
rs1471868122 1676 dbSNP
rs995275726 1679 dbSNP
rs1041619565 1686 dbSNP
rs1181902447 1693 dbSNP
rs540553925 1700 dbSNP
rs1435720316 1701 dbSNP
rs1235367965 1702 dbSNP
rs896798750 1702 dbSNP
rs577299796 1706 dbSNP
rs1195892886 1709 dbSNP
rs1210426060 1716 dbSNP
rs942929486 1718 dbSNP
rs1245210311 1732 dbSNP
rs1288915429 1732 dbSNP
rs749684252 1739 dbSNP
rs911474419 1741 dbSNP
rs1226532884 1745 dbSNP
rs979063849 1747 dbSNP
rs1334218139 1748 dbSNP
rs951072098 1749 dbSNP
rs1315002006 1751 dbSNP
rs573140403 1755 dbSNP
rs564356090 1756 dbSNP
rs912937619 1757 dbSNP
rs1005538018 1760 dbSNP
rs890754862 1761 dbSNP
rs1389869616 1765 dbSNP
rs1051971194 1767 dbSNP
rs775613743 1770 dbSNP
rs1221092510 1774 dbSNP
rs922121202 1777 dbSNP
rs969976790 1782 dbSNP
rs1221882529 1794 dbSNP
rs1349634074 1796 dbSNP
rs1016576207 1805 dbSNP
rs1352556520 1806 dbSNP
rs1301377733 1818 dbSNP
rs1006164349 1821 dbSNP
rs1053779726 1822 dbSNP
rs559367859 1823 dbSNP
rs778220764 1825 dbSNP
rs923928389 1829 dbSNP
rs1207797690 1830 dbSNP
rs978154935 1832 dbSNP
rs545510134 1834 dbSNP
rs949416129 1837 dbSNP
rs917804267 1840 dbSNP
rs990750634 1841 dbSNP
rs959170614 1844 dbSNP
rs1266248614 1846 dbSNP
rs1253373449 1849 dbSNP
rs1190140769 1850 dbSNP
rs1490357382 1857 dbSNP
rs901263190 1858 dbSNP
rs1041197162 1866 dbSNP
rs575173430 1867 dbSNP
rs556820730 1870 dbSNP
rs77251883 1872 dbSNP
rs973807147 1884 dbSNP
rs574697103 1890 dbSNP
rs889991152 1891 dbSNP
rs1225192340 1894 dbSNP
rs540792914 1901 dbSNP
rs756546856 1902 dbSNP
rs1206567213 1913 dbSNP
rs868650809 1918 dbSNP
rs1223016321 1921 dbSNP
rs961188722 1926 dbSNP
rs1295335858 1938 dbSNP
rs1015672710 1947 dbSNP
rs1319399303 1959 dbSNP
rs1459103966 1961 dbSNP
rs1007855726 1963 dbSNP
rs1175216313 1966 dbSNP
rs1265958991 1970 dbSNP
rs1243890305 1974 dbSNP
rs553123465 1986 dbSNP
rs890794750 1994 dbSNP
rs748441419 2000 dbSNP
rs1184247236 2003 dbSNP
rs1030515702 2016 dbSNP
rs947681220 2017 dbSNP
rs535004472 2018 dbSNP
rs115660003 2020 dbSNP
rs938405540 2025 dbSNP
rs1262241051 2029 dbSNP
rs1053914470 2034 dbSNP
rs936746336 2045 dbSNP
rs573536520 2046 dbSNP
rs1303578352 2047 dbSNP
rs1380870903 2050 dbSNP
rs1212815676 2052 dbSNP
rs1042872324 2053 dbSNP
rs949383523 2069 dbSNP
rs1437770218 2070 dbSNP
rs552816528 2071 dbSNP
rs1294633584 2073 dbSNP
rs1404414676 2073 dbSNP
rs917943475 2074 dbSNP
rs1017498648 2081 dbSNP
rs114793321 2084 dbSNP
rs1169909152 2085 dbSNP
rs1420178450 2092 dbSNP
rs114241722 2093 dbSNP
rs937942577 2095 dbSNP
rs7225 2096 dbSNP
rs537732058 2102 dbSNP
rs1186515638 2111 dbSNP
rs1297033153 2112 dbSNP
rs973973407 2117 dbSNP
rs961506655 2119 dbSNP
rs1007010877 2124 dbSNP
rs1306956087 2125 dbSNP
rs889950464 2128 dbSNP
rs557377563 2137 dbSNP
rs1015310495 2146 dbSNP
rs1381212060 2147 dbSNP
rs1314873315 2148 dbSNP
rs986972433 2159 dbSNP
rs1380916629 2161 dbSNP
rs1296050959 2162 dbSNP
rs765230908 2165 dbSNP
rs757116160 2166 dbSNP
rs1169919099 2168 dbSNP
rs1422738562 2172 dbSNP
rs996376089 2187 dbSNP
rs14339 2188 dbSNP
rs1343207950 2196 dbSNP
rs938331874 2208 dbSNP
rs749876412 2209 dbSNP
rs866269364 2226 dbSNP
rs1225428631 2228 dbSNP
rs1032556478 2240 dbSNP
rs1001005833 2244 dbSNP
rs1357933064 2245 dbSNP
rs902691704 2260 dbSNP
rs946273 2261 dbSNP
rs949525116 2262 dbSNP
rs561879558 2268 dbSNP
rs948535384 2270 dbSNP
rs11555521 2280 dbSNP
rs775246989 2285 dbSNP
rs1309318929 2290 dbSNP
rs1402494377 2293 dbSNP
rs15177 2294 dbSNP
rs919159443 2302 dbSNP
rs919802269 2303 dbSNP
rs1459354783 2311 dbSNP
rs1038702504 2313 dbSNP
rs565715708 2319 dbSNP
rs189123475 2320 dbSNP
rs546069526 2329 dbSNP
rs759108870 2330 dbSNP
rs1197861984 2332 dbSNP
rs1489868047 2340 dbSNP
rs1268229578 2341 dbSNP
rs1431415961 2354 dbSNP
rs762544924 2356 dbSNP
rs575140327 2370 dbSNP
rs1184519345 2373 dbSNP
rs1489744230 2374 dbSNP
rs975007567 2380 dbSNP
rs771571036 2394 dbSNP
rs1032565833 2397 dbSNP
rs1289783139 2400 dbSNP
rs1221190767 2404 dbSNP
rs749880177 2406 dbSNP
rs1344369902 2410 dbSNP
rs563250188 2413 dbSNP
rs1303209010 2415 dbSNP
rs1388508101 2423 dbSNP
rs954163681 2425 dbSNP
rs1001541565 2436 dbSNP
rs541583227 2437 dbSNP
rs1021571281 2443 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' agguAGUCCUCA-GUACCUUCGa 5'
              || ||  | | ||||||| 
Target 5' ----UCUGGCUUCCCUGGAAGCu 3'
1 - 19
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000377263.1 | 3UTR | UCUGGCUUCCCUGGAAGCUCUCCGAGCUCUGGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
HNSC -0.643 0.08 -0.657 0.08 6 Click to see details
LUSC 0.299 0.24 0.381 0.18 8 Click to see details
BRCA 0.225 0.24 0.308 0.17 12 Click to see details
BLCA -0.479 0.34 -0.500 0.33 3 Click to see details
BLCA -0.479 0.34 -0.500 0.33 3 Click to see details
BLCA -0.479 0.34 -0.500 0.33 3 Click to see details
BLCA -0.479 0.34 -0.500 0.33 3 Click to see details
84 hsa-miR-2115-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT155281 IFNAR2 interferon alpha and beta receptor subunit 2 2 6
MIRT257301 MYLIP myosin regulatory light chain interacting protein 2 8
MIRT441907 SEPN1 selenoprotein N 2 2
MIRT442300 ZNF496 zinc finger protein 496 2 2
MIRT468235 SGK1 serum/glucocorticoid regulated kinase 1 2 2
MIRT469331 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT470203 PSAT1 phosphoserine aminotransferase 1 2 6
MIRT475945 GXYLT1 glucoside xylosyltransferase 1 2 4
MIRT481449 ARRB2 arrestin beta 2 2 2
MIRT497440 SLC16A10 solute carrier family 16 member 10 2 2
MIRT498270 KIAA1644 KIAA1644 2 2
MIRT499225 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT501742 NSD1 nuclear receptor binding SET domain protein 1 2 2
MIRT501762 NRF1 nuclear respiratory factor 1 2 6
MIRT527902 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT528559 DNAAF3 dynein axonemal assembly factor 3 2 2
MIRT531252 PDF peptide deformylase, mitochondrial 2 2
MIRT539490 ACTN4 actinin alpha 4 2 2
MIRT550683 YARS tyrosyl-tRNA synthetase 2 2
MIRT573441 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT616740 DCTN5 dynactin subunit 5 2 2
MIRT617626 RAB3IP RAB3A interacting protein 2 2
MIRT620780 MT1A metallothionein 1A 2 2
MIRT623174 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT624880 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT625799 MDC1 mediator of DNA damage checkpoint 1 2 2
MIRT629790 CHRFAM7A CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion 2 2
MIRT630535 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT630762 ZNF445 zinc finger protein 445 2 2
MIRT630921 UNC93A unc-93 homolog A 2 2
MIRT630949 PANK1 pantothenate kinase 1 2 2
MIRT631688 NQO2 N-ribosyldihydronicotinamide:quinone reductase 2 2 2
MIRT633898 FGF10 fibroblast growth factor 10 2 2
MIRT635935 PLA2G12A phospholipase A2 group XIIA 2 2
MIRT636177 THBD thrombomodulin 2 2
MIRT636730 AFAP1 actin filament associated protein 1 2 2
MIRT638038 SHPK sedoheptulokinase 2 2
MIRT639164 LAMTOR3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 2 2
MIRT639260 MANEAL mannosidase endo-alpha like 2 2
MIRT639327 C9orf41 carnosine N-methyltransferase 1 2 2
MIRT639849 YY1 YY1 transcription factor 2 2
MIRT641474 B4GALNT3 beta-1,4-N-acetyl-galactosaminyltransferase 3 2 2
MIRT642783 CHCHD3 coiled-coil-helix-coiled-coil-helix domain containing 3 2 2
MIRT643653 MYOCD myocardin 2 2
MIRT645717 PTPRF protein tyrosine phosphatase, receptor type F 2 2
MIRT648018 SLCO4C1 solute carrier organic anion transporter family member 4C1 2 2
MIRT648236 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT648563 MEMO1 mediator of cell motility 1 2 2
MIRT648731 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT650179 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT650721 TNFSF8 TNF superfamily member 8 2 2
MIRT652179 TRIM44 tripartite motif containing 44 2 2
MIRT654272 RFFL ring finger and FYVE like domain containing E3 ubiquitin protein ligase 2 2
MIRT654493 RAD51L3-RFFL RAD51L3-RFFL readthrough 2 2
MIRT654861 PPM1F protein phosphatase, Mg2+/Mn2+ dependent 1F 2 2
MIRT656392 MCU mitochondrial calcium uniporter 2 2
MIRT656623 LRRC15 leucine rich repeat containing 15 2 2
MIRT657085 JMY junction mediating and regulatory protein, p53 cofactor 2 2
MIRT659793 CBLB Cbl proto-oncogene B 2 2
MIRT660155 BRCC3 BRCA1/BRCA2-containing complex subunit 3 2 2
MIRT662444 SERPINB5 serpin family B member 5 2 2
MIRT663116 SPTA1 spectrin alpha, erythrocytic 1 2 2
MIRT665759 TMEM43 transmembrane protein 43 2 2
MIRT666357 SIKE1 suppressor of IKBKE 1 2 2
MIRT668521 ESRRG estrogen related receptor gamma 2 2
MIRT677776 FKTN fukutin 2 2
MIRT678900 TTLL12 tubulin tyrosine ligase like 12 2 2
MIRT702825 HOOK3 hook microtubule tethering protein 3 2 2
MIRT704424 CTNNBIP1 catenin beta interacting protein 1 2 2
MIRT709470 KRTAP19-1 keratin associated protein 19-1 2 2
MIRT710939 MRPL45 mitochondrial ribosomal protein L45 2 2
MIRT713306 TYRP1 tyrosinase related protein 1 2 2
MIRT716932 FAM13A family with sequence similarity 13 member A 2 2
MIRT717539 PYGO2 pygopus family PHD finger 2 2 2
MIRT718060 CYP3A5 cytochrome P450 family 3 subfamily A member 5 2 2
MIRT718934 TRIM66 tripartite motif containing 66 2 2
MIRT719770 ZNF236 zinc finger protein 236 2 2
MIRT720164 PNPO pyridoxamine 5'-phosphate oxidase 2 2
MIRT721280 RAD54L2 RAD54 like 2 2 2
MIRT721359 ENTHD1 ENTH domain containing 1 2 2
MIRT721506 CARHSP1 calcium regulated heat stable protein 1 2 2
MIRT721920 LINGO2 leucine rich repeat and Ig domain containing 2 2 2
MIRT722791 FUT4 fucosyltransferase 4 2 2
MIRT723933 SVOP SV2 related protein 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-2115 Docetaxel+Cisplatin+5-Fluorouracil sensitive tissue (hypopharyngeal squamous cell carcinoma)
hsa-mir-2115 Decitabine 451668 approved sensitive tissue (esopheageal cancer)
hsa-miR-2115-5p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-2115-5p Tamoxifen 2733525 NSC180973 approved sensitive cell line (LCC2)
hsa-miR-2115-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-2115-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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