miRTarBase - #MIRT706648


—
pre-miRNA Information
pre-miRNA hsa-mir-3689d-1   
Genomic Coordinates chr9: 134849609 - 134849682
Description Homo sapiens miR-3689d-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3689d-2   
Genomic Coordinates chr9: 134850277 - 134850356
Description Homo sapiens miR-3689d-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3689d
Sequence 2| GGGAGGUGUGAUCUCACACUCG |23
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs551722268 8 dbSNP
rs143142996 8 dbSNP
rs1236297052 12 dbSNP
rs573148947 14 dbSNP
rs1210004979 14 dbSNP
rs1217460444 14 dbSNP
rs762590109 18 dbSNP
rs574332265 18 dbSNP
rs1164353021 21 dbSNP
rs963741171 21 dbSNP
rs1177416877 22 dbSNP
rs765777344 22 dbSNP
Putative Targets

Gene Information
Gene Symbol SMIM19   
Synonyms C8orf40
Description small integral membrane protein 19
Transcript NM_001135674   
Other Transcripts NM_001135675 , NM_001135676 , NM_138436   
Expression
Putative miRNA Targets on SMIM19
3'UTR of SMIM19
(miRNA target sites are highlighted)		 
>SMIM19|NM_001135674|3'UTR
   1 AACCTCAGAAAAAGAGCAACAGAAGTAATTGTTTCAAGCTCCTGATTCTTTCTACTAAATCATGAACAGCTTTAAAAACA
  81 TTTCTGTCTGCATAAAATTATTTTACTTGTAACTTTTCCCCAATTGTTCTGTGCATTGTTTTGCCTTTTTAAATTACATC
 161 TCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAGGATATGTGTAACCAGCGATGGTGACTTGACCT
 241 TGCCAAGACCTGTGATTCCTTCAGGATACAATCAGTGAGAAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTA
 321 TGCCATTTGCAATATTAAAAAATAAAAATGCAAGTTATTATTTCAATAATAACTTCCTGTTTCATTGTAAAAAAAAAAAA
 401 AAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gcucACACUCUAGUGUGGAGGg 5'
              | | | ||:|||:|||| 
Target 5' gcctTTTTAAATTACATCTCCa 3'
 143 - 164 146.00 -14.90
2 
miRNA  3' gcUCACACUCUA-----GUGUGGAGgg 5'
            |||| || ||     ||||:||:  
Target 5' tcAGTGAGAAATAAAAACACATCTTgg 3'
 272 - 298 116.00 -12.70
3 
miRNA  3' gcucacacucuagugUGGAGGg 5'
                         ||:||| 
Target 5' attatttcaataataACTTCCt 3'
 357 - 378 104.00 -10.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM6180901 1 COSMIC
COSN31500311 9 COSMIC
COSN30123589 23 COSMIC
COSN30148064 36 COSMIC
COSN30163300 42 COSMIC
COSN31501944 45 COSMIC
COSN30146396 68 COSMIC
COSN30185962 85 COSMIC
COSN30512173 103 COSMIC
COSN28188588 121 COSMIC
COSN21322029 367 COSMIC
COSN7672181 1114 COSMIC
COSN16744204 1199 COSMIC
COSN8085168 1601 COSMIC
COSN22632671 1621 COSMIC
COSN8085169 1969 COSMIC
COSN8577229 2025 COSMIC
COSN8085170 2051 COSMIC
COSN23361982 2075 COSMIC
COSN23654409 2363 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs368564087 5 dbSNP
rs1165142721 8 dbSNP
rs1387410092 13 dbSNP
rs1325905432 15 dbSNP
rs930175126 16 dbSNP
rs1425698421 22 dbSNP
rs761918301 25 dbSNP
rs766452576 30 dbSNP
rs1460344237 31 dbSNP
rs751495430 37 dbSNP
rs746769055 38 dbSNP
rs1362901721 39 dbSNP
rs759452198 42 dbSNP
rs1057364933 46 dbSNP
rs138368316 49 dbSNP
rs1212447412 55 dbSNP
rs1467092480 74 dbSNP
rs892060644 76 dbSNP
rs1335446792 79 dbSNP
rs1233970961 81 dbSNP
rs1010209142 88 dbSNP
rs1241446613 89 dbSNP
rs1377841449 104 dbSNP
rs373101905 114 dbSNP
rs1302786182 119 dbSNP
rs1438743849 122 dbSNP
rs910166749 122 dbSNP
rs543675946 124 dbSNP
rs968749433 135 dbSNP
rs1383244110 146 dbSNP
rs1221042433 158 dbSNP
rs1455024716 160 dbSNP
rs1380466866 164 dbSNP
rs143918212 166 dbSNP
rs756677593 171 dbSNP
rs1192488328 174 dbSNP
rs532889174 175 dbSNP
rs1452003376 180 dbSNP
rs1252139413 198 dbSNP
rs552182727 201 dbSNP
rs559438281 202 dbSNP
rs528164622 205 dbSNP
rs1199479487 207 dbSNP
rs1481805195 211 dbSNP
rs1175896478 213 dbSNP
rs1250414769 214 dbSNP
rs1018402818 215 dbSNP
rs1279835730 217 dbSNP
rs1232231116 223 dbSNP
rs894476273 225 dbSNP
rs1276020340 226 dbSNP
rs950067410 243 dbSNP
rs1045861386 247 dbSNP
rs923187283 251 dbSNP
rs1320705616 266 dbSNP
rs1414946127 271 dbSNP
rs1460487406 276 dbSNP
rs903254116 280 dbSNP
rs998710338 284 dbSNP
rs115827932 287 dbSNP
rs1170664238 289 dbSNP
rs1054286689 304 dbSNP
rs983101737 307 dbSNP
rs1396362986 325 dbSNP
rs1172584241 332 dbSNP
rs1475051689 337 dbSNP
rs908881046 355 dbSNP
rs893076593 357 dbSNP
rs1416479098 365 dbSNP
rs1257137463 377 dbSNP
rs1208982141 386 dbSNP
rs1350230807 393 dbSNP
rs1291384707 395 dbSNP
rs1213997226 396 dbSNP
rs768504564 399 dbSNP
rs1007478805 400 dbSNP
rs1017915531 408 dbSNP
rs1227852722 417 dbSNP
rs568068916 426 dbSNP
rs997126835 431 dbSNP
rs1401045687 433 dbSNP
rs557563517 433 dbSNP
rs1057486969 443 dbSNP
rs938829489 443 dbSNP
rs372156029 444 dbSNP
rs1026045549 445 dbSNP
rs1185443805 445 dbSNP
rs1360480325 445 dbSNP
rs1416886301 445 dbSNP
rs1478056947 445 dbSNP
rs35145052 445 dbSNP
rs551783148 445 dbSNP
rs66557303 445 dbSNP
rs757814948 445 dbSNP
rs762951162 445 dbSNP
rs1486784148 446 dbSNP
rs1202860868 447 dbSNP
rs892012568 450 dbSNP
rs950469561 462 dbSNP
rs1436133802 463 dbSNP
rs1275793942 464 dbSNP
rs1450671459 465 dbSNP
rs1213586268 466 dbSNP
rs1010906922 468 dbSNP
rs1256064844 469 dbSNP
rs1472162775 472 dbSNP
rs1235475229 473 dbSNP
rs1186649738 475 dbSNP
rs1380934069 476 dbSNP
rs1284396290 477 dbSNP
rs1043351826 480 dbSNP
rs1421192510 481 dbSNP
rs1426294926 489 dbSNP
rs982948526 493 dbSNP
rs1169322686 494 dbSNP
rs904515024 496 dbSNP
rs1006921772 502 dbSNP
rs1436386973 509 dbSNP
rs910062109 510 dbSNP
rs1468730552 511 dbSNP
rs1240107910 516 dbSNP
rs1310961154 518 dbSNP
rs530706181 524 dbSNP
rs1468448823 526 dbSNP
rs963161939 533 dbSNP
rs1215990258 534 dbSNP
rs1313056514 536 dbSNP
rs991772540 536 dbSNP
rs376886747 542 dbSNP
rs1270913327 551 dbSNP
rs1446817554 554 dbSNP
rs916118034 560 dbSNP
rs184516299 564 dbSNP
rs1212971448 566 dbSNP
rs1350250287 573 dbSNP
rs1297172709 576 dbSNP
rs1349000619 581 dbSNP
rs1399188058 586 dbSNP
rs1382356888 591 dbSNP
rs1179375685 593 dbSNP
rs1030583555 602 dbSNP
rs763172343 610 dbSNP
rs1193412775 612 dbSNP
rs570400399 614 dbSNP
rs983766800 615 dbSNP
rs1260507462 616 dbSNP
rs1278791667 628 dbSNP
rs147242753 629 dbSNP
rs749764254 630 dbSNP
rs934724822 633 dbSNP
rs1240289501 634 dbSNP
rs1346488927 639 dbSNP
rs1301248463 648 dbSNP
rs1054913997 653 dbSNP
rs1368144775 658 dbSNP
rs892988866 659 dbSNP
rs1428343906 670 dbSNP
rs1362739888 683 dbSNP
rs1159455872 685 dbSNP
rs1007776588 687 dbSNP
rs1243283709 688 dbSNP
rs35516634 689 dbSNP
rs397704505 689 dbSNP
rs1187493915 692 dbSNP
rs1178239101 704 dbSNP
rs1038979976 705 dbSNP
rs34102486 706 dbSNP
rs1434265307 709 dbSNP
rs901740126 714 dbSNP
rs1395346116 715 dbSNP
rs1489457387 716 dbSNP
rs927016231 721 dbSNP
rs1455403773 722 dbSNP
rs1346621234 730 dbSNP
rs2974352 733 dbSNP
rs34135526 733 dbSNP
rs1025930680 734 dbSNP
rs1312737759 734 dbSNP
rs950355354 748 dbSNP
rs115285631 753 dbSNP
rs1299101179 756 dbSNP
rs913386815 757 dbSNP
rs946268256 758 dbSNP
rs1304680291 765 dbSNP
rs1466580346 766 dbSNP
rs73632785 767 dbSNP
rs962925217 775 dbSNP
rs904797960 781 dbSNP
rs1424793431 793 dbSNP
rs942652475 794 dbSNP
rs1485153604 796 dbSNP
rs774324626 797 dbSNP
rs1201719559 804 dbSNP
rs868614570 814 dbSNP
rs1483280556 820 dbSNP
rs140760620 821 dbSNP
rs1196673307 822 dbSNP
rs746072117 823 dbSNP
rs1319819678 826 dbSNP
rs73675086 827 dbSNP
rs1232397746 831 dbSNP
rs543979708 840 dbSNP
rs1025761610 842 dbSNP
rs1236942951 844 dbSNP
rs1395843755 847 dbSNP
rs1301786176 853 dbSNP
rs971638400 854 dbSNP
rs557617884 865 dbSNP
rs577609527 869 dbSNP
rs1467658303 871 dbSNP
rs981476038 873 dbSNP
rs117441223 877 dbSNP
rs112722278 878 dbSNP
rs1004743273 881 dbSNP
rs1474415549 884 dbSNP
rs1016112169 885 dbSNP
rs963277044 897 dbSNP
rs979703825 904 dbSNP
rs367760614 913 dbSNP
rs1033977566 914 dbSNP
rs1224777281 918 dbSNP
rs934625439 919 dbSNP
rs542630365 921 dbSNP
rs992978343 924 dbSNP
rs776395762 928 dbSNP
rs1044360 930 dbSNP
rs1207610642 932 dbSNP
rs1267515698 935 dbSNP
rs914627524 935 dbSNP
rs1469587751 943 dbSNP
rs946185967 948 dbSNP
rs761659595 957 dbSNP
rs978941831 958 dbSNP
rs1378345109 964 dbSNP
rs1191364716 965 dbSNP
rs541485287 970 dbSNP
rs926161002 988 dbSNP
rs765019034 989 dbSNP
rs753734328 991 dbSNP
rs149318135 1002 dbSNP
rs757141111 1007 dbSNP
rs1455692817 1014 dbSNP
rs530555654 1018 dbSNP
rs1362807340 1020 dbSNP
rs922589006 1029 dbSNP
rs1440963368 1031 dbSNP
rs1158601011 1034 dbSNP
rs773140751 1046 dbSNP
rs767886929 1048 dbSNP
rs550356263 1049 dbSNP
rs762817280 1054 dbSNP
rs1047596011 1055 dbSNP
rs887218403 1069 dbSNP
rs1350268562 1072 dbSNP
rs1284111063 1073 dbSNP
rs765877016 1077 dbSNP
rs1330841376 1079 dbSNP
rs377363406 1079 dbSNP
rs886127799 1082 dbSNP
rs1333273818 1101 dbSNP
rs1281755068 1102 dbSNP
rs570352872 1103 dbSNP
rs1005816369 1104 dbSNP
rs1016047096 1105 dbSNP
rs894869754 1106 dbSNP
rs532967290 1112 dbSNP
rs1172400124 1114 dbSNP
rs1477013607 1115 dbSNP
rs1248348950 1125 dbSNP
rs751075777 1126 dbSNP
rs1446192491 1148 dbSNP
rs1013942521 1149 dbSNP
rs1276439310 1152 dbSNP
rs1219071612 1153 dbSNP
rs546439453 1158 dbSNP
rs1279727199 1159 dbSNP
rs1211384061 1165 dbSNP
rs1023547877 1166 dbSNP
rs1217495893 1169 dbSNP
rs971522308 1170 dbSNP
rs1288744172 1172 dbSNP
rs1275924997 1175 dbSNP
rs754639666 1185 dbSNP
rs566675317 1187 dbSNP
rs1020429527 1189 dbSNP
rs981693590 1190 dbSNP
rs1183787563 1191 dbSNP
rs1332968240 1202 dbSNP
rs1412233602 1203 dbSNP
rs1427245482 1204 dbSNP
rs376406317 1205 dbSNP
rs1475001698 1206 dbSNP
rs956053211 1211 dbSNP
rs978887486 1212 dbSNP
rs1188580059 1216 dbSNP
rs1418599840 1218 dbSNP
rs753303412 1228 dbSNP
rs371201855 1229 dbSNP
rs1161646063 1231 dbSNP
rs1390348664 1236 dbSNP
rs1316522705 1239 dbSNP
rs1280504005 1241 dbSNP
rs568518959 1244 dbSNP
rs537196876 1245 dbSNP
rs557581007 1248 dbSNP
rs964242749 1252 dbSNP
rs577473085 1259 dbSNP
rs189532374 1273 dbSNP
rs1334172781 1280 dbSNP
rs974818547 1281 dbSNP
rs553678425 1284 dbSNP
rs573476036 1287 dbSNP
rs975650165 1288 dbSNP
rs922902732 1291 dbSNP
rs933962675 1293 dbSNP
rs541796349 1294 dbSNP
rs1409688840 1304 dbSNP
rs111605223 1305 dbSNP
rs1473854234 1306 dbSNP
rs1356771125 1312 dbSNP
rs1230969529 1315 dbSNP
rs753108329 1317 dbSNP
rs1047654191 1325 dbSNP
rs1181104595 1328 dbSNP
rs886347236 1331 dbSNP
rs1339732926 1336 dbSNP
rs908585505 1340 dbSNP
rs1199716654 1342 dbSNP
rs1334598925 1348 dbSNP
rs771702142 1353 dbSNP
rs941730690 1354 dbSNP
rs941451234 1356 dbSNP
rs1270546348 1369 dbSNP
rs117819320 1370 dbSNP
rs1211451125 1371 dbSNP
rs1333259115 1372 dbSNP
rs1465996468 1374 dbSNP
rs540348248 1374 dbSNP
rs898995221 1375 dbSNP
rs11379177 1376 dbSNP
rs1346432356 1376 dbSNP
rs1491539512 1376 dbSNP
rs199693651 1376 dbSNP
rs77988866 1376 dbSNP
rs11387506 1377 dbSNP
rs75767063 1377 dbSNP
rs1056096524 1386 dbSNP
rs1476213936 1392 dbSNP
rs1290103383 1398 dbSNP
rs894930726 1402 dbSNP
rs1311453968 1415 dbSNP
rs2974353 1415 dbSNP
rs753493836 1419 dbSNP
rs1447428512 1420 dbSNP
rs1368110520 1427 dbSNP
rs1291593223 1438 dbSNP
rs1019952535 1439 dbSNP
rs1350737173 1442 dbSNP
rs546404535 1444 dbSNP
rs1475826567 1446 dbSNP
rs1024691452 1465 dbSNP
rs1382254425 1472 dbSNP
rs1159271019 1475 dbSNP
rs778296377 1482 dbSNP
rs757000751 1483 dbSNP
rs1433142868 1497 dbSNP
rs1423639711 1499 dbSNP
rs999940870 1510 dbSNP
rs1269223444 1514 dbSNP
rs1488996422 1514 dbSNP
rs1369046728 1515 dbSNP
rs907388952 1516 dbSNP
rs867923010 1517 dbSNP
rs964189706 1521 dbSNP
rs376535727 1525 dbSNP
rs956271978 1543 dbSNP
rs560379339 1544 dbSNP
rs1311563814 1563 dbSNP
rs1299078203 1565 dbSNP
rs1393782248 1566 dbSNP
rs1368038189 1571 dbSNP
rs778752320 1573 dbSNP
rs955658801 1590 dbSNP
rs180731662 1594 dbSNP
rs113930407 1595 dbSNP
rs964701020 1598 dbSNP
rs908536663 1599 dbSNP
rs746641853 1600 dbSNP
rs941399380 1602 dbSNP
rs1434182860 1604 dbSNP
rs1423357455 1611 dbSNP
rs1191880485 1612 dbSNP
rs975248956 1621 dbSNP
rs1268075550 1627 dbSNP
rs1341151940 1639 dbSNP
rs1234810890 1645 dbSNP
rs1482636843 1650 dbSNP
rs1282361622 1651 dbSNP
rs1195143391 1652 dbSNP
rs749754647 1653 dbSNP
rs923332478 1655 dbSNP
rs1277357093 1661 dbSNP
rs1199805944 1665 dbSNP
rs568404533 1670 dbSNP
rs937150213 1679 dbSNP
rs1253166215 1683 dbSNP
rs933185273 1693 dbSNP
rs4737045 1697 dbSNP
rs77311848 1706 dbSNP
rs1042062424 1714 dbSNP
rs148485175 1715 dbSNP
rs1169024151 1719 dbSNP
rs1467482551 1720 dbSNP
rs779854450 1725 dbSNP
rs1425399931 1740 dbSNP
rs1193450889 1741 dbSNP
rs1174723542 1746 dbSNP
rs1422811918 1746 dbSNP
rs916235356 1748 dbSNP
rs1397429295 1752 dbSNP
rs1464927863 1753 dbSNP
rs947722652 1756 dbSNP
rs1461739702 1759 dbSNP
rs1257315749 1760 dbSNP
rs999887230 1764 dbSNP
rs1046208175 1765 dbSNP
rs10533662 1773 dbSNP
rs1384994623 1774 dbSNP
rs899598389 1777 dbSNP
rs1314965837 1779 dbSNP
rs906263864 1783 dbSNP
rs1383452553 1807 dbSNP
rs1376863926 1812 dbSNP
rs1318090822 1814 dbSNP
rs745990268 1815 dbSNP
rs772275073 1817 dbSNP
rs1401488540 1828 dbSNP
rs768379885 1835 dbSNP
rs891927352 1835 dbSNP
rs7008843 1836 dbSNP
rs1166348259 1839 dbSNP
rs1305270947 1841 dbSNP
rs543045722 1845 dbSNP
rs1250988087 1846 dbSNP
rs75611625 1846 dbSNP
rs1398226543 1850 dbSNP
rs1232378261 1856 dbSNP
rs1354543997 1866 dbSNP
rs965084185 1867 dbSNP
rs1267422949 1868 dbSNP
rs996123537 1875 dbSNP
rs78607781 1877 dbSNP
rs962665432 1880 dbSNP
rs186700921 1882 dbSNP
rs1307095495 1890 dbSNP
rs1242970921 1891 dbSNP
rs1336822404 1896 dbSNP
rs974061182 1902 dbSNP
rs1246410299 1904 dbSNP
rs1464671336 1905 dbSNP
rs879778327 1912 dbSNP
rs1294914644 1914 dbSNP
rs983283825 1919 dbSNP
rs1255226174 1920 dbSNP
rs907723144 1923 dbSNP
rs1441488598 1931 dbSNP
rs992693612 1934 dbSNP
rs1364268362 1939 dbSNP
rs1431827926 1945 dbSNP
rs189567301 1946 dbSNP
rs114469550 1952 dbSNP
rs916472670 1959 dbSNP
rs1223507700 1961 dbSNP
rs1041619898 1963 dbSNP
rs142599982 1964 dbSNP
rs1156403476 1965 dbSNP
rs1387281952 1971 dbSNP
rs181733468 1973 dbSNP
rs1274757960 1980 dbSNP
rs1046092550 1981 dbSNP
rs1327526076 1984 dbSNP
rs1333182317 1988 dbSNP
rs1054132387 1989 dbSNP
rs1365175672 1995 dbSNP
rs899545861 1998 dbSNP
rs747242243 1999 dbSNP
rs577352748 2002 dbSNP
rs561530389 2008 dbSNP
rs1385641308 2010 dbSNP
rs1052143108 2011 dbSNP
rs891975437 2012 dbSNP
rs1476962157 2013 dbSNP
rs1011714752 2021 dbSNP
rs1379168607 2029 dbSNP
rs112547698 2030 dbSNP
rs1337528909 2037 dbSNP
rs866264294 2044 dbSNP
rs1230300436 2046 dbSNP
rs1477637387 2048 dbSNP
rs1218954195 2050 dbSNP
rs772908159 2054 dbSNP
rs1266247913 2058 dbSNP
rs996174383 2065 dbSNP
rs1214504992 2066 dbSNP
rs1015773135 2068 dbSNP
rs186141267 2076 dbSNP
rs1030283236 2078 dbSNP
rs762920824 2080 dbSNP
rs1191035012 2083 dbSNP
rs1339485101 2084 dbSNP
rs1275886150 2087 dbSNP
rs1463046092 2091 dbSNP
rs1432352594 2093 dbSNP
rs1004926257 2095 dbSNP
rs1014986707 2102 dbSNP
rs190464872 2103 dbSNP
rs548728179 2105 dbSNP
rs1033641943 2112 dbSNP
rs973242242 2115 dbSNP
rs1176943605 2118 dbSNP
rs1464890536 2119 dbSNP
rs548967563 2120 dbSNP
rs1475824094 2122 dbSNP
rs959400953 2122 dbSNP
rs751885638 2128 dbSNP
rs1185453257 2149 dbSNP
rs1444668395 2154 dbSNP
rs1264267977 2180 dbSNP
rs183472669 2185 dbSNP
rs916523720 2193 dbSNP
rs969323862 2203 dbSNP
rs34559623 2204 dbSNP
rs1255834736 2209 dbSNP
rs1166607388 2213 dbSNP
rs1339601324 2215 dbSNP
rs1283123434 2237 dbSNP
rs530900108 2255 dbSNP
rs1384963805 2257 dbSNP
rs981989943 2260 dbSNP
rs971231871 2261 dbSNP
rs1445853830 2264 dbSNP
rs1347808798 2268 dbSNP
rs1172197902 2269 dbSNP
rs927615668 2274 dbSNP
rs1413296989 2276 dbSNP
rs551013376 2277 dbSNP
rs1446502300 2278 dbSNP
rs1244359014 2280 dbSNP
rs1178565565 2284 dbSNP
rs766280303 2294 dbSNP
rs773901714 2308 dbSNP
rs770145197 2310 dbSNP
rs1298604683 2321 dbSNP
rs1205614166 2324 dbSNP
rs759187449 2330 dbSNP
rs749468748 2341 dbSNP
rs534458438 2342 dbSNP
rs1407860879 2344 dbSNP
rs767143141 2346 dbSNP
rs1239349389 2348 dbSNP
rs914981491 2351 dbSNP
rs1299700921 2355 dbSNP
rs1050846917 2356 dbSNP
rs1349909047 2357 dbSNP
rs1349568242 2358 dbSNP
rs1321816068 2359 dbSNP
rs570944902 2361 dbSNP
rs947567309 2362 dbSNP
rs1158072843 2367 dbSNP
rs890887352 2368 dbSNP
rs771111626 2369 dbSNP
rs752339844 2374 dbSNP
rs900786528 2375 dbSNP
rs539969650 2384 dbSNP
rs1245834220 2387 dbSNP
rs1218928637 2394 dbSNP
rs547170583 2395 dbSNP
rs1221114770 2398 dbSNP
rs1037168219 2399 dbSNP
rs1051926232 2400 dbSNP
rs1215216985 2401 dbSNP
rs1484253328 2404 dbSNP
rs1203580597 2406 dbSNP
rs898710111 2406 dbSNP
rs890475858 2413 dbSNP
rs1251779554 2416 dbSNP
rs1224189548 2418 dbSNP
rs995709251 2419 dbSNP
rs1272795100 2421 dbSNP
rs760427599 2432 dbSNP
rs1407009730 2444 dbSNP
rs1475236733 2450 dbSNP
rs764521899 2451 dbSNP
rs754203505 2454 dbSNP
rs1015451874 2462 dbSNP
rs899244970 2463 dbSNP
rs1160461575 2469 dbSNP
rs757767504 2474 dbSNP
rs1023474846 2485 dbSNP
rs1433043302 2487 dbSNP
rs779354684 2488 dbSNP
rs566908987 2502 dbSNP
rs1411176638 2505 dbSNP
rs1014024720 2509 dbSNP
rs573214387 2513 dbSNP
rs1170729091 2518 dbSNP
rs982042213 2524 dbSNP
rs1269119529 2530 dbSNP
rs1034904531 2533 dbSNP
rs956386777 2538 dbSNP
rs1192365050 2541 dbSNP
rs146486200 2552 dbSNP
rs915016582 2558 dbSNP
rs946480561 2565 dbSNP
rs1276281762 2566 dbSNP
rs774682665 2566 dbSNP
rs1346440518 2567 dbSNP
rs967204847 2574 dbSNP
rs187049300 2577 dbSNP
rs750942028 2578 dbSNP
rs977214636 2579 dbSNP
rs1304590289 2584 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293
Disease 114926.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "HITS-CLIP data was present in GSM714642. RNA binding protein: AGO2. Condition:completeT1 "HITS-CLIP data was present in GSM714643. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gcucacacucuaguguggAGGg 5'
                            ||| 
Target 5' ------------------UCCc 3'
 		1 - 4
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760630. RNA binding protein: AGO2. Condition:AGO-CLIP-22RV1_A ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM714642
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000438528.3 | 3UTR | CCUCCCGGGUUUAAACGAUUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714643
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000438528.3 | 3UTR | UCCCGGGUUUAAACGAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
231 hsa-miR-3689d Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059166 TXNIP thioredoxin interacting protein 2 4
MIRT080699 KIAA1468 KIAA1468 2 2
MIRT218770 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT278059 KHNYN KH and NYN domain containing 2 2
MIRT345933 EIF4A1 eukaryotic translation initiation factor 4A1 2 2
MIRT366238 VMA21 VMA21, vacuolar ATPase assembly factor 2 2
MIRT449689 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 2 2
MIRT451149 C19orf53 chromosome 19 open reading frame 53 2 2
MIRT451266 NDUFA11 NADH:ubiquinone oxidoreductase subunit A11 2 2
MIRT451375 C19orf43 telomerase RNA component interacting RNase 2 2
MIRT451570 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451585 HIRIP3 HIRA interacting protein 3 2 2
MIRT451614 MEIS3P1 Meis homeobox 3 pseudogene 1 2 2
MIRT451763 ZNF611 zinc finger protein 611 2 6
MIRT452383 LY6E lymphocyte antigen 6 family member E 2 4
MIRT452573 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452735 PTGES3L prostaglandin E synthase 3 like 2 6
MIRT452867 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452975 CABP4 calcium binding protein 4 2 2
MIRT453215 CERS1 ceramide synthase 1 2 2
MIRT453259 PARP11 poly(ADP-ribose) polymerase family member 11 2 2
MIRT453449 GLG1 golgi glycoprotein 1 2 2
MIRT453479 PITPNM3 PITPNM family member 3 2 2
MIRT453663 CD207 CD207 molecule 2 6
MIRT453724 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 2 2
MIRT453760 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT454181 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 6
MIRT454330 PPARA peroxisome proliferator activated receptor alpha 2 2
MIRT454338 CDKL1 cyclin dependent kinase like 1 2 2
MIRT454427 GTF2F1 general transcription factor IIF subunit 1 2 2
MIRT454665 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454825 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT455130 TBC1D25 TBC1 domain family member 25 2 2
MIRT455166 SUV39H1 suppressor of variegation 3-9 homolog 1 2 2
MIRT455416 RXRB retinoid X receptor beta 2 2
MIRT455668 GLO1 glyoxalase I 2 2
MIRT455999 CYP2C19 cytochrome P450 family 2 subfamily C member 19 2 2
MIRT456446 TMEM81 transmembrane protein 81 2 2
MIRT456642 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT456728 TMEM239 transmembrane protein 239 2 2
MIRT457131 ASPH aspartate beta-hydroxylase 2 2
MIRT457157 MXRA7 matrix remodeling associated 7 2 2
MIRT457358 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT457458 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT457619 UPK3BL uroplakin 3B like 1 2 2
MIRT457692 ZNF587 zinc finger protein 587 2 2
MIRT457727 SMOX spermine oxidase 2 2
MIRT457788 VWA1 von Willebrand factor A domain containing 1 2 2
MIRT457875 THEM6 thioesterase superfamily member 6 2 4
MIRT457909 ZNF212 zinc finger protein 212 2 2
MIRT458395 ABCF1 ATP binding cassette subfamily F member 1 2 2
MIRT458496 MARVELD2 MARVEL domain containing 2 2 2
MIRT458544 CYP2B6 cytochrome P450 family 2 subfamily B member 6 2 2
MIRT458577 TCOF1 treacle ribosome biogenesis factor 1 2 2
MIRT458732 CES2 carboxylesterase 2 2 2
MIRT458814 ZNF843 zinc finger protein 843 2 2
MIRT458931 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT459341 ZNF17 zinc finger protein 17 2 2
MIRT459365 MPLKIP M-phase specific PLK1 interacting protein 2 6
MIRT459572 NLGN2 neuroligin 2 2 2
MIRT460015 DTX3L deltex E3 ubiquitin ligase 3L 2 4
MIRT460144 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT460653 IGFBP4 insulin like growth factor binding protein 4 2 2
MIRT460798 VPS33A VPS33A, CORVET/HOPS core subunit 2 2
MIRT461058 KCNK6 potassium two pore domain channel subfamily K member 6 2 4
MIRT461458 SLC19A3 solute carrier family 19 member 3 2 2
MIRT461572 SCO1 SCO1, cytochrome c oxidase assembly protein 2 4
MIRT461927 TNFSF14 TNF superfamily member 14 2 2
MIRT461953 C3 complement C3 2 2
MIRT462278 KRR1 KRR1, small subunit processome component homolog 2 2
MIRT462744 EFNB1 ephrin B1 2 2
MIRT463136 ZNF451 zinc finger protein 451 2 4
MIRT463566 ZBTB39 zinc finger and BTB domain containing 39 2 6
MIRT463866 WNT7B Wnt family member 7B 2 2
MIRT464326 UST uronyl 2-sulfotransferase 2 2
MIRT464796 UBE2F ubiquitin conjugating enzyme E2 F (putative) 2 2
MIRT465034 TTC39C tetratricopeptide repeat domain 39C 2 2
MIRT466207 TMED10 transmembrane p24 trafficking protein 10 2 2
MIRT467007 SSBP2 single stranded DNA binding protein 2 2 2
MIRT467029 SRSF1 serine and arginine rich splicing factor 1 2 4
MIRT468001 SKI SKI proto-oncogene 2 2
MIRT468031 SIKE1 suppressor of IKBKE 1 2 6
MIRT468575 SERBP1 SERPINE1 mRNA binding protein 1 2 6
MIRT468834 RRM2 ribonucleotide reductase regulatory subunit M2 2 2
MIRT468970 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT469450 REL REL proto-oncogene, NF-kB subunit 2 6
MIRT470888 PLXND1 plexin D1 2 2
MIRT470953 PKM pyruvate kinase, muscle 2 2
MIRT471828 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT472590 NACC1 nucleus accumbens associated 1 2 2
MIRT472805 MTMR12 myotubularin related protein 12 2 2
MIRT472818 MTMR10 myotubularin related protein 10 2 6
MIRT472914 MSN moesin 2 2
MIRT474558 KLHDC3 kelch domain containing 3 2 2
MIRT474716 KIF13A kinesin family member 13A 2 6
MIRT475279 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT475300 IFNLR1 interferon lambda receptor 1 2 2
MIRT475759 HDLBP high density lipoprotein binding protein 2 2
MIRT475786 HDGF heparin binding growth factor 2 2
MIRT475933 GXYLT2 glucoside xylosyltransferase 2 2 8
MIRT476212 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT476238 GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 2 4
MIRT476799 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT477988 DNAL1 dynein axonemal light chain 1 2 2
MIRT478317 DDN dendrin 2 2
MIRT479257 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT479344 CEP97 centrosomal protein 97 2 2
MIRT479522 CDCA4 cell division cycle associated 4 2 2
MIRT479906 CCDC117 coiled-coil domain containing 117 2 6
MIRT481147 AVL9 AVL9 cell migration associated 2 6
MIRT481735 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT482089 ALG8 ALG8, alpha-1,3-glucosyltransferase 2 2
MIRT482389 AEN apoptosis enhancing nuclease 2 2
MIRT483093 TFPI tissue factor pathway inhibitor 2 2
MIRT484246 ANK1 ankyrin 1 2 2
MIRT484342 EPN1 epsin 1 2 4
MIRT489141 C5orf38 chromosome 5 open reading frame 38 2 2
MIRT489163 MRPL12 mitochondrial ribosomal protein L12 2 4
MIRT489547 SOX11 SRY-box 11 2 4
MIRT489780 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT489799 KRT80 keratin 80 2 6
MIRT490535 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT492198 SOCS1 suppressor of cytokine signaling 1 2 2
MIRT492283 SHISA6 shisa family member 6 2 4
MIRT501059 SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 2 4
MIRT501094 SLC5A6 solute carrier family 5 member 6 2 4
MIRT503870 CBS cystathionine-beta-synthase 2 2
MIRT507981 BCL2L13 BCL2 like 13 2 4
MIRT508125 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT508205 SLC35E1 solute carrier family 35 member E1 2 2
MIRT508385 SPTBN2 spectrin beta, non-erythrocytic 2 2 4
MIRT510308 PDRG1 p53 and DNA damage regulated 1 2 2
MIRT510462 ZDHHC18 zinc finger DHHC-type containing 18 2 2
MIRT512227 ATXN3 ataxin 3 2 8
MIRT512665 STEAP3 STEAP3 metalloreductase 2 2
MIRT514184 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT515053 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515138 ZNF799 zinc finger protein 799 2 4
MIRT515452 ZNF747 zinc finger protein 747 2 2
MIRT515791 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT515905 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT516129 MRPS16 mitochondrial ribosomal protein S16 2 6
MIRT516679 ZNF860 zinc finger protein 860 2 4
MIRT516750 ZNF100 zinc finger protein 100 2 2
MIRT516971 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT517491 NPAP1 nuclear pore associated protein 1 2 2
MIRT517774 PROM2 prominin 2 2 2
MIRT517938 ZNF431 zinc finger protein 431 2 4
MIRT518386 ZNF250 zinc finger protein 250 2 2
MIRT520621 TMEM41B transmembrane protein 41B 2 2
MIRT521028 SLC30A5 solute carrier family 30 member 5 2 2
MIRT521454 RAD51 RAD51 recombinase 2 2
MIRT521564 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT521581 PTBP2 polypyrimidine tract binding protein 2 2 2
MIRT522263 NKRF NFKB repressing factor 2 2
MIRT522410 MXI1 MAX interactor 1, dimerization protein 2 2
MIRT522543 MED28 mediator complex subunit 28 2 6
MIRT522915 KCNE3 potassium voltage-gated channel subfamily E regulatory subunit 3 2 2
MIRT523029 IGF1 insulin like growth factor 1 2 2
MIRT523854 ESPL1 extra spindle pole bodies like 1, separase 2 4
MIRT524184 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524520 CDK19 cyclin dependent kinase 19 2 2
MIRT524674 C12orf5 TP53 induced glycolysis regulatory phosphatase 2 2
MIRT530257 ZNF620 zinc finger protein 620 2 2
MIRT540691 BMP3 bone morphogenetic protein 3 2 2
MIRT540976 C17orf85 nuclear cap binding subunit 3 2 2
MIRT545505 NAP1L1 nucleosome assembly protein 1 like 1 2 2
MIRT545631 GGCX gamma-glutamyl carboxylase 2 2
MIRT547358 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT550701 MPL MPL proto-oncogene, thrombopoietin receptor 2 4
MIRT550717 PMPCA peptidase, mitochondrial processing alpha subunit 2 4
MIRT551203 NCR3LG1 natural killer cell cytotoxicity receptor 3 ligand 1 2 2
MIRT553999 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 4
MIRT561081 LLPH LLP homolog, long-term synaptic facilitation 2 2
MIRT563523 TAF8 TATA-box binding protein associated factor 8 2 2
MIRT564463 SLC35E2 solute carrier family 35 member E2 2 2
MIRT565233 TRAF6 TNF receptor associated factor 6 2 2
MIRT566618 NKAP NFKB activating protein 2 2
MIRT569527 AP5Z1 adaptor related protein complex 5 zeta 1 subunit 2 2
MIRT569639 QPCT glutaminyl-peptide cyclotransferase 2 2
MIRT570253 SSPN sarcospan 2 2
MIRT570570 OTUD7B OTU deubiquitinase 7B 2 2
MIRT570621 MTF2 metal response element binding transcription factor 2 2 2
MIRT571098 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 2
MIRT575196 Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT575554 Cd99 CD99 antigen 2 2
MIRT575634 Gnl3l guanine nucleotide binding protein-like 3 (nucleolar)-like 2 2
MIRT608267 NOP14 NOP14 nucleolar protein 2 2
MIRT609314 FXYD6 FXYD domain containing ion transport regulator 6 2 2
MIRT627670 RPL28 ribosomal protein L28 2 2
MIRT631185 TSPAN14 tetraspanin 14 2 2
MIRT631964 YIPF5 Yip1 domain family member 5 2 2
MIRT632885 GINM1 glycoprotein integral membrane 1 2 2
MIRT642618 CDKN3 cyclin dependent kinase inhibitor 3 2 2
MIRT645609 TSPAN6 tetraspanin 6 2 2
MIRT662227 PGBD4 piggyBac transposable element derived 4 2 2
MIRT662329 MYLK3 myosin light chain kinase 3 2 2
MIRT662725 LRRC3C leucine rich repeat containing 3C 2 2
MIRT665520 USP14 ubiquitin specific peptidase 14 2 2
MIRT666634 RBMS2 RNA binding motif single stranded interacting protein 2 2 2
MIRT668969 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT670925 DESI1 desumoylating isopeptidase 1 2 2
MIRT673939 ZNF500 zinc finger protein 500 2 2
MIRT674675 PLCE1 phospholipase C epsilon 1 2 2
MIRT675230 MAK male germ cell associated kinase 2 2
MIRT680864 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT681047 ZDBF2 zinc finger DBF-type containing 2 2 2
MIRT681105 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT683553 HAVCR1 hepatitis A virus cellular receptor 1 2 2
MIRT684508 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT684812 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT685981 CCDC77 coiled-coil domain containing 77 2 2
MIRT686709 TBC1D19 TBC1 domain family member 19 2 2
MIRT686867 SLC25A32 solute carrier family 25 member 32 2 2
MIRT688908 C11orf84 chromosome 11 open reading frame 84 2 2
MIRT691208 KLHL30 kelch like family member 30 2 2
MIRT692298 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT694380 MTA1 metastasis associated 1 2 2
MIRT696497 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT700686 POLR3D RNA polymerase III subunit D 2 2
MIRT701088 PAPOLG poly(A) polymerase gamma 2 2
MIRT703373 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT706189 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT706648 SMIM19 small integral membrane protein 19 2 2
MIRT709466 KRTAP19-1 keratin associated protein 19-1 2 2
MIRT709699 DMWD DM1 locus, WD repeat containing 2 2
MIRT710693 LYRM4 LYR motif containing 4 2 2
MIRT713457 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT722409 RARS2 arginyl-tRNA synthetase 2, mitochondrial 2 2
MIRT725391 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT725548 DNMT3A DNA methyltransferase 3 alpha 2 2

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