pre-miRNA Information
pre-miRNA hsa-mir-3123   
Genomic Coordinates chr1: 241132272 - 241132346
Description Homo sapiens miR-3123 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3123
Sequence 49| CAGAGAAUUGUUUAAUC |65
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 1 + 241132323 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1453759221 1 dbSNP
rs968575171 5 dbSNP
rs979407933 9 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TARDBP   
Synonyms ALS10, TDP-43
Description TAR DNA binding protein
Transcript NM_007375   
Expression
Putative miRNA Targets on TARDBP
3'UTR of TARDBP
(miRNA target sites are highlighted)
>TARDBP|NM_007375|3'UTR
   1 ACAGTGGGGTTGTGGTTGGTTGGTATAGAATGGTGGGAATTCAAATTTTTCTAAACTCATGGTAAGTATATTGTAAAATA
  81 CATATGTACTAAGAATTTTCAAAATTGGTTTGTTCAGTGTGGAGTATATTCAGCAGTATTTTTGACATTTTTCTTTAGAA
 161 AAAGGAAGAGCTAAAGGAATTTTATAAGTTTTGTTACATGAAAGGTTGAAATATTGAGTGGTTGAAAGTGAACTGCTGTT
 241 TGCCTGATTGGTAAACCAACACACTACAATTGATATCAAAAGGTTTCTCCTGTAATATTTTATCCCTGGACTTGTCAAGT
 321 GAATTCTTTGCATGTTCAAAACGGAAACCATTGATTAGAACTACATTCTTTACCCCTTGTTTTAATTTGAACCCCACCAT
 401 ATGGATTTTTTTCCTTAAGAAAATCTCCTTTTAGGAGATCATGGTGTCACAGTGTTTGGTTCTTTTGTTTTGTTTTTTAA
 481 CACTTGTCTCCCCTCATACACAAAAGTACAATATGAAGCCTTCATTTAATCTCTGCAGTTCATCTCATTTCAAATGTTTA
 561 TGGAAGAAGCACTTCATTGAAAGTAGTGCTGTAAATATTCTGCCATAGGAATACTGTCTACATGCTTTCTCATTCAAGAA
 641 TTCGTCATCACGCATCACAGGCCGCGTCTTTGACGGTGGGTGTCCCATTTTTATCCGCTACTCTTTATTTCATGGAGTCG
 721 TATCAACGCTATGAACGCAAGGCTGTGATATGGAACCAGAAGGCTGTCTGAACTTTTGAAACCTTGTGTGGGATTGATGG
 801 TGGTGCCGAGGCATGAAAGGCTAGTATGAGCGAGAAAAGGAGAGAGCGCGTGCAGAGACTTGGTGGTGCATAATGGATAT
 881 TTTTTAACTTGGCGAGATGTGTCTCTCAATCCTGTGGCTTTGGTGAGAGAGTGTGCAGAGAGCAATGATAGCAAATAATG
 961 TACGAATGTTTTTTGCATTCAAAGGACATCCACATCTGTTGGAAGACTTTTAAGTGAGTTTTTGTTCTTAGATAACCCAC
1041 ATTAGATGAATGTGTTAAGTGAAATGATACTTGTACTCCCCCTACCCCTTTGTCAACTGCTGTGAATGCTGTATGGTGTG
1121 TGTTCTCTTCTGTTACTGATATGTAAGTGTGGCAATGTGAACTGAAGCTGATGGGCTGAGAACATGGACTGAGCTTGTGG
1201 TGTGCTTTGCAGGAGGACTTGAAGCAGAGTTCACCAGTGAGCTCAGGTGTCTCAAAGAAGGGTGGAAGTTCTAATGTCTG
1281 TTAGCTACCCATAAGAATGCTGTTTGCTGCAGTTCTGTGTCCTGTGCTTGGATGCTTTTTATAAGAGTTGTCATTGTTGG
1361 AAATTCTTAAATAAAACTGATTTAAATAATATGTGTCTTTGTTTTGCAGCCCTGAATGCAAAGAATTCATAGCAGTTAAT
1441 TCCCCTTTTTTGACCCTTTTGAGATGGAACTTTCATAAAGTTTCTTGGCAGTAGTTTATTTTGCTTCAAATAAACTTATT
1521 TGAAAAGTTGTCTCAAGTCAAATGGATTCATCACCTGTCATGCATTGACACCTGATACCCAGACTTAATTGGTATTTGTT
1601 CTTGCATTGGCCAAAGTGAAAATTTTTTTTTTTCTTTTGAAATCTAGTTTTGAATAAGTCTGGGTGACCGCACCTAAAAT
1681 GGTAAGCAGTACCCTCCGGCTTTTTCTTAGTGCCTCTGTGCATTTGGGTGATGTTCTATTTACATGGCCTGTGTAAATCT
1761 CCATTGGGAAGTCATGCCTTCTAAAAAGATTCTTATTTGGGGGAGTGGGCAAAATGTTGATTATTTTCTAATGCTTTGTA
1841 GCAAAGCATATCAATTGAAAAGGGAATATCAGCACCTTCCTAGTTTGGGATTTGAAAAGTGGAATTAATTGCAGTAGGGA
1921 TAAAGTAGAAGAAACCACAAATTATCTTGTGCCTGAAATCCATTAAGAGGCCTGATAGCTTTAAGAATTAGGGTGGGTTG
2001 TCTGTCTGGAAGTGTTAAGTGGAATGGGCTTTGTCCTCCAGGAGGTGGGGGAATGTGGTAACATTGAATACAGTTGAATA
2081 AAATCGCTTACAAAACTCACACTCTCACAATGCATTGTTAAGTATGTAAAAGCAATAACATTGATTCTCTGTTGTACTTT
2161 TTTGTAACTAATTCTGTGAGAGTTGAGCTCATTTTCTAGTTGGAAGAATGTGATATTTGTTGTGTTGGTAGTTTACCTAA
2241 TGCCCTTACCTAATTAGATTATGATAAATAGGTTTGTCATTTTGCAAGTTACATAAACATTTATCAATGAAGTCATCCTT
2321 TAGACTTGTAATCGCCACATTGTTTCATTATTCAGTTTCCTCTGTAAAGGGATCTTGAGTTGTTTTAATTTTTTTTTTCT
2401 GCATCTGAATCTGCATGATTTCCAAACCCTGTACCATCTGAATTTTGCATTTTAGCACTTGCACTATTACTCAGCAGCAG
2481 TAACATGGTAACACTTAAAATGGTACTCGGGGACCTCCAAAGACTAAACTGACAAGCCTTCAAGGAGCCCAGGGGTAAGT
2561 TAACTTGTCAACGGCATGGTTTAATCCCTTCTTTACACTTGTGTAAATTTCAGTTACTGGTCATAGAAGGCTTTCAATGT
2641 TGAGTGGCCTTTTATTAACATGTTTATGGTACTGCATAGATACGGGTATTTATTTTACCCTAAGAAGATTTTGAAGTTTA
2721 AAAGTACTTAAACTATTTGGCAAAGATTTGTTTTTAAAAATCTATTTGGTCAATCTAAATGCATTCATTCTAAAAAATTT
2801 TTTGAACCAGATAAATAAAATTTTTTTTTGACACCACAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cuaauUUGU---UAAGAGAc 5'
               ||||   ||||||| 
Target 5' gcaatAACATTGATTCTCTg 3'
2132 - 2151 148.00 -10.40
2
miRNA  3' cuAAUUUG-UUAAGAGAc 5'
            | ||:: ||||||:| 
Target 5' tgTCAAGTGAATTCTTTg 3'
313 - 330 135.00 -7.90
3
miRNA  3' cuAAU-UUG-U-UAAGAGAc 5'
            ||| ||| | |||||:| 
Target 5' gaTTAGAACTACATTCTTTa 3'
353 - 372 135.00 -5.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
873794 57 ClinVar
873795 74 ClinVar
21465 84 ClinVar
291741 130 ClinVar
873796 143 ClinVar
291742 160 ClinVar
291743 209 ClinVar
291744 215 ClinVar
874754 307 ClinVar
874755 344 ClinVar
291745 502 ClinVar
874756 552 ClinVar
874757 557 ClinVar
875691 561 ClinVar
875692 592 ClinVar
875693 617 ClinVar
875694 664 ClinVar
291746 667 ClinVar
875695 671 ClinVar
5239 698 ClinVar
875696 764 ClinVar
291747 843 ClinVar
291748 863 ClinVar
876684 955 ClinVar
291749 964 ClinVar
291750 1009 ClinVar
291751 1082 ClinVar
291752 1085 ClinVar
291753 1595 ClinVar
291754 1623 ClinVar
291755 1623 ClinVar
291756 1624 ClinVar
291757 1796 ClinVar
291758 2006 ClinVar
291759 2030 ClinVar
291760 2047 ClinVar
873851 2124 ClinVar
291761 2155 ClinVar
291762 2253 ClinVar
874799 2261 ClinVar
291763 2294 ClinVar
291764 2332 ClinVar
874800 2334 ClinVar
291765 2335 ClinVar
291766 2361 ClinVar
291767 2537 ClinVar
291768 2741 ClinVar
874801 2750 ClinVar
291769 2751 ClinVar
291770 2774 ClinVar
291771 2821 ClinVar
875738 2824 ClinVar
COSN26572563 10 COSMIC
COSN26668621 36 COSMIC
COSN13454779 39 COSMIC
COSN31516552 50 COSMIC
COSN26583578 59 COSMIC
COSN13454784 89 COSMIC
COSN30101783 90 COSMIC
COSN31512340 116 COSMIC
COSN32120110 217 COSMIC
COSN6521647 267 COSMIC
COSN30527400 273 COSMIC
COSN30534046 324 COSMIC
COSN31529048 327 COSMIC
COSN31570823 369 COSMIC
COSN5730557 419 COSMIC
COSN5730558 424 COSMIC
COSN31568535 458 COSMIC
COSN8635330 567 COSMIC
COSN30122688 626 COSMIC
COSN26662480 630 COSMIC
COSN30609282 663 COSMIC
COSN30143218 675 COSMIC
COSN31552257 697 COSMIC
COSN30126758 717 COSMIC
COSN31489370 725 COSMIC
COSN30143047 729 COSMIC
COSN1401068 732 COSMIC
COSN4743361 735 COSMIC
COSN30110566 808 COSMIC
COSN31577519 975 COSMIC
COSN31589647 987 COSMIC
COSN31538172 1045 COSMIC
COSN26507029 1059 COSMIC
COSN26575249 1086 COSMIC
COSN26644199 1101 COSMIC
COSN26667418 1143 COSMIC
COSN23303457 1264 COSMIC
COSN31540279 1335 COSMIC
COSN19249122 1349 COSMIC
COSN20776930 1349 COSMIC
COSN31548354 1384 COSMIC
COSN25164602 1510 COSMIC
COSN8886472 1528 COSMIC
COSN16325774 1551 COSMIC
COSN15732500 1561 COSMIC
COSN5998395 1585 COSMIC
COSN26576566 1754 COSMIC
COSN22223460 2019 COSMIC
COSN1401071 2137 COSMIC
COSN16685413 2143 COSMIC
COSN8317822 2156 COSMIC
COSN20094301 2295 COSMIC
COSN31524072 2585 COSMIC
COSN14515071 2822 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1376675022 4 dbSNP
rs770985747 4 dbSNP
rs1204146387 8 dbSNP
rs1414849358 10 dbSNP
rs1210355144 12 dbSNP
rs1269295000 13 dbSNP
rs1466980477 13 dbSNP
rs776662743 13 dbSNP
rs1192726075 19 dbSNP
rs1002574163 22 dbSNP
rs749743510 27 dbSNP
rs1359741360 33 dbSNP
rs1216302617 35 dbSNP
rs1156387245 36 dbSNP
rs769281218 38 dbSNP
rs779622218 43 dbSNP
rs373319524 45 dbSNP
rs1459151059 51 dbSNP
rs1392854827 54 dbSNP
rs1440666601 57 dbSNP
rs1332428222 59 dbSNP
rs1379462291 69 dbSNP
rs1238234842 71 dbSNP
rs185638796 74 dbSNP
rs1322411796 78 dbSNP
rs961045655 78 dbSNP
rs1313632771 83 dbSNP
rs80356744 84 dbSNP
rs913716813 88 dbSNP
rs1212888599 94 dbSNP
rs550403167 99 dbSNP
rs1238546002 105 dbSNP
rs1323789024 108 dbSNP
rs966634734 108 dbSNP
rs568944641 115 dbSNP
rs886045036 130 dbSNP
rs1285447755 131 dbSNP
rs979327793 145 dbSNP
rs1218640696 157 dbSNP
rs886045037 160 dbSNP
rs1255358970 166 dbSNP
rs1482772794 181 dbSNP
rs1182293021 183 dbSNP
rs780670219 185 dbSNP
rs943070084 186 dbSNP
rs1380101615 189 dbSNP
rs1397893953 192 dbSNP
rs1291486805 194 dbSNP
rs1332657647 198 dbSNP
rs1232598529 204 dbSNP
rs1257832534 207 dbSNP
rs148414479 209 dbSNP
rs557787340 215 dbSNP
rs1380327427 225 dbSNP
rs1202115651 230 dbSNP
rs1250442359 236 dbSNP
rs573267417 238 dbSNP
rs1483353537 249 dbSNP
rs1407776626 250 dbSNP
rs1183150403 256 dbSNP
rs1421024122 260 dbSNP
rs1254762366 261 dbSNP
rs1475208118 269 dbSNP
rs573058752 271 dbSNP
rs1051304713 274 dbSNP
rs887265640 278 dbSNP
rs1357937907 280 dbSNP
rs1004350148 283 dbSNP
rs1038633868 284 dbSNP
rs1465840995 284 dbSNP
rs1303858655 293 dbSNP
rs1467760565 296 dbSNP
rs898718949 297 dbSNP
rs1354901308 299 dbSNP
rs1400624315 305 dbSNP
rs1002221471 306 dbSNP
rs1034083151 307 dbSNP
rs1212627965 319 dbSNP
rs896590248 322 dbSNP
rs1312470976 333 dbSNP
rs1013620049 337 dbSNP
rs867513243 340 dbSNP
rs533778494 343 dbSNP
rs555353123 344 dbSNP
rs1266018426 345 dbSNP
rs1474696813 351 dbSNP
rs1308829011 353 dbSNP
rs1377689840 357 dbSNP
rs1426303559 362 dbSNP
rs1435204938 363 dbSNP
rs548888176 369 dbSNP
rs879496793 375 dbSNP
rs1420417320 376 dbSNP
rs1276401560 377 dbSNP
rs1346941761 380 dbSNP
rs755772086 386 dbSNP
rs979212984 394 dbSNP
rs1428538039 396 dbSNP
rs1032274504 400 dbSNP
rs879138268 402 dbSNP
rs1368046563 403 dbSNP
rs1236147645 406 dbSNP
rs1300840274 407 dbSNP
rs573824736 426 dbSNP
rs1346659847 440 dbSNP
rs777323104 441 dbSNP
rs1285724729 448 dbSNP
rs1210523980 454 dbSNP
rs1257595509 455 dbSNP
rs1479550566 463 dbSNP
rs755733628 463 dbSNP
rs1215706569 472 dbSNP
rs1192099268 473 dbSNP
rs922927696 473 dbSNP
rs974459509 473 dbSNP
rs1394748148 487 dbSNP
rs763044830 490 dbSNP
rs1486811417 491 dbSNP
rs1211685302 494 dbSNP
rs933092068 496 dbSNP
rs1405881227 498 dbSNP
rs1385185899 500 dbSNP
rs1485166207 501 dbSNP
rs1165333760 502 dbSNP
rs1442877664 502 dbSNP
rs886045038 502 dbSNP
rs544313146 503 dbSNP
rs1420620196 509 dbSNP
rs1454111646 512 dbSNP
rs563939085 515 dbSNP
rs760833870 519 dbSNP
rs770659882 525 dbSNP
rs1316992081 530 dbSNP
rs1342944493 532 dbSNP
rs1432757364 534 dbSNP
rs1240414028 541 dbSNP
rs1289377529 541 dbSNP
rs766709042 543 dbSNP
rs1369895854 544 dbSNP
rs1438430204 545 dbSNP
rs879665101 546 dbSNP
rs750948407 552 dbSNP
rs1235366581 556 dbSNP
rs776417983 557 dbSNP
rs1327849117 559 dbSNP
rs1315234584 560 dbSNP
rs1218479013 561 dbSNP
rs866509003 562 dbSNP
rs1243216120 577 dbSNP
rs1064824 578 dbSNP
rs759521197 582 dbSNP
rs759396520 592 dbSNP
rs1255337841 599 dbSNP
rs1454410001 602 dbSNP
rs1458439124 605 dbSNP
rs575772488 606 dbSNP
rs1231337796 608 dbSNP
rs1405074803 614 dbSNP
rs1401947753 617 dbSNP
rs752614150 620 dbSNP
rs748863467 621 dbSNP
rs374735544 622 dbSNP
rs1327650115 623 dbSNP
rs1334549961 624 dbSNP
rs751165380 632 dbSNP
rs1038914818 633 dbSNP
rs1393460426 636 dbSNP
rs1447168034 638 dbSNP
rs898775216 644 dbSNP
rs1437408222 645 dbSNP
rs1333579018 648 dbSNP
rs546346594 649 dbSNP
rs1440889243 650 dbSNP
rs1284252345 652 dbSNP
rs1357976372 653 dbSNP
rs1231992157 660 dbSNP
rs1273033148 662 dbSNP
rs1401373740 664 dbSNP
rs770786699 666 dbSNP
rs778834503 667 dbSNP
rs745611651 671 dbSNP
rs1188396400 672 dbSNP
rs1259691258 675 dbSNP
rs867661382 685 dbSNP
rs1366794471 687 dbSNP
rs896489029 697 dbSNP
rs387906334 698 dbSNP
rs1303363868 706 dbSNP
rs1417010901 714 dbSNP
rs1013502580 720 dbSNP
rs564637529 721 dbSNP
rs796937200 726 dbSNP
rs1458862180 727 dbSNP
rs1334316388 732 dbSNP
rs1211239741 738 dbSNP
rs1245670589 739 dbSNP
rs1293238619 740 dbSNP
rs1478081117 744 dbSNP
rs1341638710 747 dbSNP
rs1313652486 748 dbSNP
rs528715466 752 dbSNP
rs1268769446 786 dbSNP
rs1192241350 809 dbSNP
rs1339050099 812 dbSNP
rs1201245706 814 dbSNP
rs1282663410 827 dbSNP
rs1484743055 832 dbSNP
rs886045039 843 dbSNP
rs1256762575 848 dbSNP
rs1477013022 851 dbSNP
rs1170495254 860 dbSNP
rs1429025854 861 dbSNP
rs886045040 863 dbSNP
rs1195133485 874 dbSNP
rs1371122870 878 dbSNP
rs1424565928 889 dbSNP
rs1173893634 894 dbSNP
rs1376845382 897 dbSNP
rs1432362803 898 dbSNP
rs1467423673 902 dbSNP
rs181715581 904 dbSNP
rs1287565745 908 dbSNP
rs1361798116 914 dbSNP
rs1321852234 919 dbSNP
rs1384408264 925 dbSNP
rs1000683371 946 dbSNP
rs1326220095 949 dbSNP
rs1437283168 953 dbSNP
rs1295153637 955 dbSNP
rs1338408590 962 dbSNP
rs751628760 964 dbSNP
rs1345950113 966 dbSNP
rs1233723888 969 dbSNP
rs1278655569 983 dbSNP
rs1032571852 995 dbSNP
rs1206828097 1006 dbSNP
rs7545171 1008 dbSNP
rs141412238 1009 dbSNP
rs1446239299 1011 dbSNP
rs7514132 1012 dbSNP
rs1193984557 1015 dbSNP
rs1396551593 1016 dbSNP
rs529176283 1019 dbSNP
rs1452165554 1030 dbSNP
rs1172543980 1032 dbSNP
rs1363873749 1037 dbSNP
rs1226212607 1040 dbSNP
rs775184230 1046 dbSNP
rs7511713 1047 dbSNP
rs935419253 1052 dbSNP
rs1384818667 1056 dbSNP
rs1442145323 1062 dbSNP
rs1288743988 1071 dbSNP
rs1369124687 1078 dbSNP
rs975058579 1079 dbSNP
rs1451614683 1081 dbSNP
rs184303021 1082 dbSNP
rs886045041 1085 dbSNP
rs1271677665 1087 dbSNP
rs188745732 1089 dbSNP
rs1349832176 1097 dbSNP
rs1214152856 1098 dbSNP
rs983091824 1103 dbSNP
rs907637741 1111 dbSNP
rs1192626703 1114 dbSNP
rs1250727747 1117 dbSNP
rs1264285093 1122 dbSNP
rs1479024092 1128 dbSNP
rs1420384191 1135 dbSNP
rs1156269387 1137 dbSNP
rs1161609026 1139 dbSNP
rs1363771673 1141 dbSNP
rs1413360177 1141 dbSNP
rs569304701 1143 dbSNP
rs1461198333 1147 dbSNP
rs767556095 1147 dbSNP
rs1298985195 1156 dbSNP
rs974289251 1159 dbSNP
rs920084031 1165 dbSNP
rs181172753 1169 dbSNP
rs1335163334 1175 dbSNP
rs1399384131 1190 dbSNP
rs1274902358 1210 dbSNP
rs1332435196 1214 dbSNP
rs1055789506 1221 dbSNP
rs11093 1228 dbSNP
rs1481396059 1232 dbSNP
rs918147221 1234 dbSNP
rs1249204150 1239 dbSNP
rs949402519 1243 dbSNP
rs1190711052 1245 dbSNP
rs1298758659 1248 dbSNP
rs1042358752 1254 dbSNP
rs1342101284 1254 dbSNP
rs902629871 1255 dbSNP
rs1460650184 1261 dbSNP
rs1297751880 1262 dbSNP
rs1376151834 1272 dbSNP
rs1445548823 1279 dbSNP
rs1416638365 1284 dbSNP
rs1295084006 1292 dbSNP
rs1353448337 1302 dbSNP
rs1227577044 1310 dbSNP
rs1283180613 1312 dbSNP
rs1001355282 1322 dbSNP
rs866558880 1326 dbSNP
rs1229505204 1342 dbSNP
rs879013397 1353 dbSNP
rs1352363209 1377 dbSNP
rs1256075130 1380 dbSNP
rs1475154664 1390 dbSNP
rs1187530077 1417 dbSNP
rs1216471027 1432 dbSNP
rs1427044499 1442 dbSNP
rs1170028976 1449 dbSNP
rs1264532773 1466 dbSNP
rs1395870866 1469 dbSNP
rs900341963 1475 dbSNP
rs1449039107 1477 dbSNP
rs995984427 1480 dbSNP
rs1447188458 1486 dbSNP
rs925739782 1499 dbSNP
rs202125775 1504 dbSNP
rs935707970 1510 dbSNP
rs1039377573 1520 dbSNP
rs899531354 1531 dbSNP
rs1237110766 1542 dbSNP
rs1473274465 1560 dbSNP
rs1030681555 1563 dbSNP
rs997847063 1565 dbSNP
rs1348118003 1567 dbSNP
rs954582185 1570 dbSNP
rs1277557648 1574 dbSNP
rs1442417893 1578 dbSNP
rs1217142512 1593 dbSNP
rs1004579093 1595 dbSNP
rs748047297 1595 dbSNP
rs886045042 1595 dbSNP
rs769981440 1596 dbSNP
rs1253916684 1599 dbSNP
rs1455734267 1603 dbSNP
rs1419211013 1606 dbSNP
rs1394560650 1608 dbSNP
rs1051369076 1614 dbSNP
rs887344237 1620 dbSNP
rs551513393 1623 dbSNP
rs886045043 1623 dbSNP
rs927025376 1623 dbSNP
rs963161028 1623 dbSNP
rs566657331 1624 dbSNP
rs1362391675 1635 dbSNP
rs898584020 1645 dbSNP
rs1300726692 1659 dbSNP
rs1412531453 1671 dbSNP
rs1223810492 1675 dbSNP
rs1002667087 1678 dbSNP
rs1315628622 1681 dbSNP
rs1208554106 1690 dbSNP
rs918199793 1691 dbSNP
rs1333306497 1696 dbSNP
rs868681262 1698 dbSNP
rs1449701655 1699 dbSNP
rs534073893 1700 dbSNP
rs1470571397 1707 dbSNP
rs1178992382 1717 dbSNP
rs150412704 1719 dbSNP
rs949621442 1723 dbSNP
rs1398867094 1738 dbSNP
rs992103756 1739 dbSNP
rs773363335 1744 dbSNP
rs923937129 1745 dbSNP
rs967672964 1749 dbSNP
rs977283016 1752 dbSNP
rs1287348694 1758 dbSNP
rs1323512870 1761 dbSNP
rs936652658 1768 dbSNP
rs1280769787 1774 dbSNP
rs573662295 1778 dbSNP
rs1228319711 1782 dbSNP
rs1274288597 1784 dbSNP
rs367730821 1785 dbSNP
rs1337429941 1790 dbSNP
rs1199066921 1791 dbSNP
rs1212167294 1793 dbSNP
rs886045044 1796 dbSNP
rs1443379156 1797 dbSNP
rs1206787418 1799 dbSNP
rs975606385 1800 dbSNP
rs920995736 1811 dbSNP
rs996425430 1816 dbSNP
rs537965776 1817 dbSNP
rs1418427182 1822 dbSNP
rs1476085631 1825 dbSNP
rs933674044 1843 dbSNP
rs185335376 1855 dbSNP
rs373070606 1862 dbSNP
rs763142065 1874 dbSNP
rs890399591 1875 dbSNP
rs940228180 1887 dbSNP
rs1352271613 1913 dbSNP
rs1038544388 1915 dbSNP
rs188129567 1916 dbSNP
rs1357881499 1927 dbSNP
rs1231894869 1932 dbSNP
rs898694355 1936 dbSNP
rs1340402122 1937 dbSNP
rs766947093 1947 dbSNP
rs1197783268 1954 dbSNP
rs994491507 1967 dbSNP
rs775031068 1981 dbSNP
rs1211641819 1992 dbSNP
rs1171949270 1993 dbSNP
rs1402594181 1999 dbSNP
rs886045045 2006 dbSNP
rs760003156 2008 dbSNP
rs1034529784 2010 dbSNP
rs958471197 2020 dbSNP
rs1475584161 2023 dbSNP
rs546087173 2027 dbSNP
rs1328792940 2029 dbSNP
rs886045046 2030 dbSNP
rs1416897572 2039 dbSNP
rs1399164581 2041 dbSNP
rs886045047 2047 dbSNP
rs752628438 2049 dbSNP
rs1013554866 2054 dbSNP
rs564700348 2056 dbSNP
rs1377859335 2057 dbSNP
rs1413469738 2059 dbSNP
rs1334010548 2064 dbSNP
rs1327404902 2065 dbSNP
rs1230012656 2066 dbSNP
rs1020890246 2071 dbSNP
rs562716883 2073 dbSNP
rs1341691506 2076 dbSNP
rs947842616 2076 dbSNP
rs573241524 2077 dbSNP
rs1282554389 2082 dbSNP
rs1345729822 2086 dbSNP
rs967326794 2087 dbSNP
rs978322070 2094 dbSNP
rs1231652882 2098 dbSNP
rs540511549 2098 dbSNP
rs1195021019 2107 dbSNP
rs1274812920 2109 dbSNP
rs1448487823 2111 dbSNP
rs1173791830 2115 dbSNP
rs977774921 2122 dbSNP
rs924156544 2123 dbSNP
rs1464055996 2124 dbSNP
rs1205983810 2136 dbSNP
rs936685594 2142 dbSNP
rs989466415 2145 dbSNP
rs922039719 2148 dbSNP
rs1032923568 2150 dbSNP
rs957454567 2152 dbSNP
rs886045048 2155 dbSNP
rs1345843285 2156 dbSNP
rs1232569646 2157 dbSNP
rs767900931 2159 dbSNP
rs866361569 2169 dbSNP
rs753061819 2172 dbSNP
rs1252698114 2175 dbSNP
rs890283438 2189 dbSNP
rs986466811 2198 dbSNP
rs1464219770 2209 dbSNP
rs1254440243 2217 dbSNP
rs756101899 2217 dbSNP
rs1430985285 2218 dbSNP
rs899054774 2222 dbSNP
rs769903956 2225 dbSNP
rs1364932402 2227 dbSNP
rs1455796855 2227 dbSNP
rs1157497228 2233 dbSNP
rs994942179 2236 dbSNP
rs1034003373 2238 dbSNP
rs908170972 2239 dbSNP
rs763189855 2240 dbSNP
rs1168351892 2241 dbSNP
rs894255722 2250 dbSNP
rs552057039 2253 dbSNP
rs1241104365 2261 dbSNP
rs1286318791 2264 dbSNP
rs1328250572 2280 dbSNP
rs145446787 2289 dbSNP
rs199558954 2293 dbSNP
rs200729007 2294 dbSNP
rs5772439 2294 dbSNP
rs3059695 2295 dbSNP
rs1208788739 2299 dbSNP
rs1013951818 2301 dbSNP
rs1420290627 2302 dbSNP
rs1387906014 2305 dbSNP
rs898730757 2308 dbSNP
rs938209582 2316 dbSNP
rs1055194386 2329 dbSNP
rs970872544 2331 dbSNP
rs114897688 2332 dbSNP
rs1298895156 2333 dbSNP
rs138320721 2334 dbSNP
rs182302907 2335 dbSNP
rs902549661 2340 dbSNP
rs1317712686 2341 dbSNP
rs1000853521 2350 dbSNP
rs989910588 2351 dbSNP
rs766754751 2354 dbSNP
rs886045049 2361 dbSNP
rs1251474943 2364 dbSNP
rs1253297053 2367 dbSNP
rs1202367639 2379 dbSNP
rs1251788529 2381 dbSNP
rs1354264447 2382 dbSNP
rs1486276883 2382 dbSNP
rs1190599179 2383 dbSNP
rs1209375073 2384 dbSNP
rs753675523 2385 dbSNP
rs1423544712 2387 dbSNP
rs753285584 2388 dbSNP
rs1171423506 2389 dbSNP
rs1427954247 2389 dbSNP
rs987560011 2389 dbSNP
rs996699261 2389 dbSNP
rs1307478226 2402 dbSNP
rs1369939739 2403 dbSNP
rs1415323168 2408 dbSNP
rs1304453554 2409 dbSNP
rs1028120128 2411 dbSNP
rs533417171 2416 dbSNP
rs1295896786 2419 dbSNP
rs1343825992 2428 dbSNP
rs1225620574 2432 dbSNP
rs955117245 2437 dbSNP
rs1347887576 2450 dbSNP
rs1262146144 2465 dbSNP
rs911938685 2467 dbSNP
rs756780885 2471 dbSNP
rs908283676 2473 dbSNP
rs1476041216 2478 dbSNP
rs1191054986 2479 dbSNP
rs1172004009 2481 dbSNP
rs1186773340 2494 dbSNP
rs1167809118 2511 dbSNP
rs1395605077 2512 dbSNP
rs961358685 2513 dbSNP
rs940520503 2527 dbSNP
rs1357535836 2532 dbSNP
rs878990146 2535 dbSNP
rs886045050 2537 dbSNP
rs778779399 2538 dbSNP
rs1456958622 2549 dbSNP
rs1367715544 2563 dbSNP
rs1036185303 2570 dbSNP
rs1297403071 2571 dbSNP
rs1163402417 2574 dbSNP
rs755828450 2575 dbSNP
rs1221471802 2578 dbSNP
rs1275844921 2585 dbSNP
rs1311124309 2589 dbSNP
rs1366701578 2590 dbSNP
rs920187069 2600 dbSNP
rs1296921822 2602 dbSNP
rs1253441272 2605 dbSNP
rs1455504293 2607 dbSNP
rs1189426893 2612 dbSNP
rs930576889 2621 dbSNP
rs565549021 2628 dbSNP
rs532714006 2629 dbSNP
rs918117866 2632 dbSNP
rs1297975290 2635 dbSNP
rs1455889017 2636 dbSNP
rs1024027040 2638 dbSNP
rs1395710747 2644 dbSNP
rs1273591491 2650 dbSNP
rs1366203923 2652 dbSNP
rs1223845195 2653 dbSNP
rs551331110 2661 dbSNP
rs949550989 2662 dbSNP
rs1326609841 2672 dbSNP
rs1320210817 2673 dbSNP
rs370008350 2675 dbSNP
rs879892176 2676 dbSNP
rs1453128905 2677 dbSNP
rs902581577 2679 dbSNP
rs1246052302 2682 dbSNP
rs1470505811 2683 dbSNP
rs1001286221 2684 dbSNP
rs1053768603 2687 dbSNP
rs1214314588 2697 dbSNP
rs1285230375 2707 dbSNP
rs1471710059 2723 dbSNP
rs1488463210 2728 dbSNP
rs1158732599 2735 dbSNP
rs989739027 2739 dbSNP
rs566658679 2741 dbSNP
rs1322060072 2744 dbSNP
rs996731746 2747 dbSNP
rs1028236461 2750 dbSNP
rs779882516 2751 dbSNP
rs1029622814 2754 dbSNP
rs1348115748 2761 dbSNP
rs1187614719 2765 dbSNP
rs187380325 2774 dbSNP
rs987443932 2776 dbSNP
rs1358111094 2783 dbSNP
rs1226387159 2784 dbSNP
rs1288940740 2788 dbSNP
rs1438293290 2792 dbSNP
rs1417324516 2796 dbSNP
rs1254008159 2798 dbSNP
rs1015788847 2799 dbSNP
rs191706916 2806 dbSNP
rs1181644129 2807 dbSNP
rs1157319835 2811 dbSNP
rs1161798751 2821 dbSNP
rs1369262925 2821 dbSNP
rs1473928605 2821 dbSNP
rs886045051 2821 dbSNP
rs912011445 2822 dbSNP
rs961126665 2824 dbSNP
rs974165384 2828 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293
Disease 23435.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "HITS-CLIP data was present in GSM714642. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_007375 | 3UTR | UUAAGUAUGUAAAAGCAAUAACAUUGAUUCUCUGUUGUACUUUUUUGUAACUAAUUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_007375 | 3UTR | GUAUGUAAAAGCAAUAACAUUGAUUCUCUGUUGUACUUUUUUGUAACUAAUUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_007375 | 3UTR | AUUGAUUCUCUGUUGUACUUUUUUGUAACUAAUUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_007375 | 3UTR | AUUGAUUCUCUGUUGUACUUUUUUGUAACUAAUUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM714642
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000240185.3 | 3UTR | CUGUUGUACUUUUUUGUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
113 hsa-miR-3123 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT058369 TBCEL tubulin folding cofactor E like 2 4
MIRT059816 EFNA1 ephrin A1 2 2
MIRT066850 TMEM19 transmembrane protein 19 2 2
MIRT071503 CALM1 calmodulin 1 2 6
MIRT073758 NUBP1 nucleotide binding protein 1 2 2
MIRT074324 TNRC6A trinucleotide repeat containing 6A 2 10
MIRT094805 LMNB1 lamin B1 2 2
MIRT099173 MAP3K4 mitogen-activated protein kinase kinase kinase 4 2 2
MIRT099545 ID4 inhibitor of DNA binding 4, HLH protein 2 2
MIRT122643 E2F3 E2F transcription factor 3 2 2
MIRT180918 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 8
MIRT192844 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT224984 BAG4 BCL2 associated athanogene 4 2 2
MIRT246065 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT357085 PRRC1 proline rich coiled-coil 1 2 2
MIRT378170 C5ORF51 chromosome 5 open reading frame 51 2 2
MIRT441636 KDM5A lysine demethylase 5A 2 2
MIRT441802 BCAS1 breast carcinoma amplified sequence 1 2 2
MIRT443019 C21orf91 chromosome 21 open reading frame 91 2 2
MIRT443445 SERPINB4 serpin family B member 4 2 2
MIRT443661 SERPINB3 serpin family B member 3 2 2
MIRT443776 STS steroid sulfatase 2 2
MIRT444663 TSPAN14 tetraspanin 14 2 2
MIRT444924 KIAA1522 KIAA1522 2 2
MIRT445378 FOXO1 forkhead box O1 2 2
MIRT447920 PAIP2B poly(A) binding protein interacting protein 2B 2 2
MIRT449202 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT449713 TSPYL1 TSPY like 1 2 2
MIRT450403 TMEM47 transmembrane protein 47 2 2
MIRT450787 PAPOLG poly(A) polymerase gamma 2 2
MIRT451381 C19orf43 telomerase RNA component interacting RNase 2 2
MIRT452507 WDR1 WD repeat domain 1 2 2
MIRT453264 PARP11 poly(ADP-ribose) polymerase family member 11 2 2
MIRT454642 FAM83H family with sequence similarity 83 member H 2 2
MIRT455513 C6orf106 chromosome 6 open reading frame 106 2 2
MIRT456709 LDB1 LIM domain binding 1 2 2
MIRT457231 AP3D1 adaptor related protein complex 3 delta 1 subunit 2 2
MIRT459235 MRPS21 mitochondrial ribosomal protein S21 2 2
MIRT460553 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT461424 CTSL2 cathepsin V 2 3
MIRT462869 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT467178 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT469233 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT474125 LIPC lipase C, hepatic type 2 2
MIRT475509 HSP90B1 heat shock protein 90 beta family member 1 2 4
MIRT478134 DHX36 DEAH-box helicase 36 2 2
MIRT481326 ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 2 2
MIRT482003 AMOTL2 angiomotin like 2 2 2
MIRT482230 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT483436 RHOXF2B Rhox homeobox family member 2B 2 2
MIRT483824 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT492051 TNFSF9 TNF superfamily member 9 2 2
MIRT494114 DLX6 distal-less homeobox 6 2 2
MIRT498882 ZNF12 zinc finger protein 12 2 10
MIRT499674 NPHP3 nephrocystin 3 2 2
MIRT506932 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT509461 ZNF587 zinc finger protein 587 2 6
MIRT510048 AKR1B10 aldo-keto reductase family 1 member B10 2 4
MIRT514807 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT515217 CRCP CGRP receptor component 2 2
MIRT515486 INCENP inner centromere protein 2 4
MIRT517765 ZNF366 zinc finger protein 366 2 4
MIRT518216 TRMT10B tRNA methyltransferase 10B 2 2
MIRT519602 ZNF805 zinc finger protein 805 2 2
MIRT523570 GGCX gamma-glutamyl carboxylase 2 4
MIRT525795 SOD2 superoxide dismutase 2 2 2
MIRT533055 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT534218 SLC37A3 solute carrier family 37 member 3 2 4
MIRT535633 NR2E1 nuclear receptor subfamily 2 group E member 1 2 2
MIRT535863 MRPL17 mitochondrial ribosomal protein L17 2 2
MIRT536344 LEFTY1 left-right determination factor 1 2 2
MIRT537923 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT543114 SKA2 spindle and kinetochore associated complex subunit 2 2 2
MIRT544717 ZNF529 zinc finger protein 529 2 2
MIRT544847 BASP1 brain abundant membrane attached signal protein 1 2 4
MIRT545536 ARF3 ADP ribosylation factor 3 2 2
MIRT547124 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT548070 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548446 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT548626 DAZAP1 DAZ associated protein 1 2 4
MIRT550259 FAM120AOS family with sequence similarity 120A opposite strand 2 2
MIRT551940 AKAP8 A-kinase anchoring protein 8 2 4
MIRT552511 ZIK1 zinc finger protein interacting with K protein 1 2 4
MIRT554015 SPIRE1 spire type actin nucleation factor 1 2 2
MIRT556647 KPNA2 karyopherin subunit alpha 2 2 4
MIRT559744 ACOX1 acyl-CoA oxidase 1 2 2
MIRT560393 TMEM254 transmembrane protein 254 2 2
MIRT562234 HMGB2 high mobility group box 2 2 2
MIRT563325 ORC4 origin recognition complex subunit 4 2 2
MIRT563697 RPS26 ribosomal protein S26 2 2
MIRT565066 USP25 ubiquitin specific peptidase 25 2 2
MIRT565349 TMED2 transmembrane p24 trafficking protein 2 2 2
MIRT565624 SLC31A1 solute carrier family 31 member 1 2 2
MIRT566379 PNISR PNN interacting serine and arginine rich protein 2 2
MIRT567575 FEM1C fem-1 homolog C 2 2
MIRT569383 DDX20 DEAD-box helicase 20 2 2
MIRT570037 FAM228A family with sequence similarity 228 member A 2 2
MIRT573269 DCAF10 DDB1 and CUL4 associated factor 10 2 2
MIRT573912 PARP1 poly(ADP-ribose) polymerase 1 2 2
MIRT620034 ST6GALNAC3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 2 2
MIRT635606 ZWILCH zwilch kinetochore protein 2 2
MIRT644413 FRMD6 FERM domain containing 6 2 2
MIRT652528 TM9SF4 transmembrane 9 superfamily member 4 2 2
MIRT656238 MFSD6 major facilitator superfamily domain containing 6 2 2
MIRT661373 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT662530 PNPLA4 patatin like phospholipase domain containing 4 2 2
MIRT675551 MALL mal, T-cell differentiation protein like 2 2
MIRT693650 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT696348 SLC35D2 solute carrier family 35 member D2 2 2
MIRT705815 AKNA AT-hook transcription factor 2 2
MIRT707632 TARDBP TAR DNA binding protein 2 2
MIRT717902 COPS8 COP9 signalosome subunit 8 2 2
MIRT723626 SOBP sine oculis binding protein homolog 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3123 Doxorubicin 31703 NSC123127 approved sensitive High Triple-Negative Breast Cancer cell line (MDA-MB-231, MDA-MB-468)
hsa-mir-3123 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3123 Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-3123 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3123 Vemurafenib 42611257 NSC761431 approved resistant cell line (LM16)

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