pre-miRNA Information
pre-miRNA hsa-mir-4666a   
Genomic Coordinates chr1: 228462074 - 228462152
Description Homo sapiens miR-4666a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4666a-5p
Sequence 10| AUACAUGUCAGAUUGUAUGCC |30
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1288210208 3 dbSNP
rs1333314792 5 dbSNP
rs562096649 7 dbSNP
rs1324809033 10 dbSNP
rs1027635037 13 dbSNP
rs1351630778 15 dbSNP
rs1034879562 18 dbSNP
rs1383267208 21 dbSNP
Putative Targets

Gene Information
Gene Symbol KLHL23   
Synonyms DITHP
Description kelch like family member 23
Transcript NM_144711   
Expression
Putative miRNA Targets on KLHL23
3'UTR of KLHL23
(miRNA target sites are highlighted)
>KLHL23|NM_144711|3'UTR
   1 TTGAATCTGCAGAAATGACCAAGCAATCACTTTTTTGGAGTATAGTTTTATAAAAAAAGAATGCAGGGTTTGAAGTTCCT
  81 TACCTGATAATTGTGTCTGGCACATGATAGGGGATCAGTAAATTGTAATTCCTAACCCTACTGTACTCCCAAACATGGTG
 161 ATTCATGGTCAAGAAAAATCTTATATATATATATATATACACACACACATATATGTGTTCATATATATGTATACATATAT
 241 ATGTGTATATATACGTATGTATACATATATGTGTATATATACGTATGTATGTATACATATGTGTATATATAGTATGTATG
 321 TATACATGTATGTGTATATATACGTATGTATGTATACATATATGTGTATACATATATATGTGTGTATATATATACACATA
 401 TATACGTATATATGTGTATATATATACACAGTTGAATCAGTGGGATTAATACCTATAATCTCTGGTTTTCAAAGGTAATA
 481 TAGAATATTTGACACTTGGTAAAAGGTGAACTACCTTTGTAGTGAATCTTTTCCTCTTGGTAGCATCAACACTGGGGATA
 561 AATCAGAACCATTCTGTGGAATGAAATGTTTCTCAAGAGCCTATAATATAGTAGATAGTGCATATTAAGATGTCTGGCTG
 641 GGCATGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGAGGATCACTTGAGCCTAGAAGTTGGAGAC
 721 TAACCTGGCGAGACCCTGTCTCAAAAAAAAAAAAAAATCAATTTAGCTAGCAGGAATTTGACATTTAAAGAGGGAATCTT
 801 CTCTACCTCTACAAAATCAACCCTTAACACTTTTTTCACCTTCAGAATTATTTAGAATGTGGATTTACTTTGTCTAGTTT
 881 TTTCCTTTATAGTGTAATTTATTGTTACTCTCTATTTACTGACTACCAGAGATATACAAAATACTGTGCAAAAGATTGTT
 961 ACTGTTCAAAGAGCTTACAAACTAAATTTAAAAGAATAGCAAGTCTGAAAAATAGAAGATAGTCAAATATTTGTTTATGC
1041 TAAGAACTGTTTTTAATTTTCAGCTTTGATGTAAATTGCTAGCTTAGTTGTCTTTAGTTCAAGCATGTTAGGAAATCCTC
1121 TTTATTCTTAAATATAGATACATGTCTGCATATATGATTGAATTTTAGAGCCAGAAAGCATGTAGAGCAGTTGTGATTAG
1201 TAGAAAATACACTGACAAGAAGATATTTGCATTTATTTCCCAAAGCTGCCAGTAACTAGATTTTGTGACTTAAGTCATTT
1281 AACCTCTCCTTGATTAGAGCTTCCTGAGCCATGCACACTGGCACTGCAAATCACAGACAGGCCTAGATACAGATCCCCTC
1361 ACCCCTTGCTACATCCAAAGGTGGCCTGGGTGGCTGGAGCCTCTGGGCCAGAACCACCTTTGTCCATTTTCCTCAGTGTG
1441 CCTACAGCATCGCTTTCCATGTGTGCCATAACTTGGGAATAGTTGGGATGTGTTGCTTAACTCCTTTACACCATTAGTTA
1521 TCTGTGAGACCATCTATTCCACACTCTTCATTTTTTAAAAAGAGACAATAATTATTTTTAACTCACTGAAGTTTAAAACT
1601 ACCTAGCATTTCTGATTAAAAAAAATTTAGAAGGAAAATTTTAATGCATTTATTTCAGATGGCGTTTTAAATAGATACAA
1681 CCCTTTGGAAACACAATATGGTACTACATAGCAAGGGCTGTAAAAATGACCATATCCTTTGCCCCATAAATTCTACTTCT
1761 ATACTTTTAACCTTAAAAATAATTCAGAAAAAAGATAAATGCATGAAGACATTTATGTCTGCATTCTTTATAATAACAAA
1841 AATTGGGGAAAAAAACTCCATGTCAAGAAAGTGGGATAAGAAAAATAGTGAAGTATTATACTGCCATTAAAATAATTATT
1921 TGGAAGACTGTAGAAACGTGGACATGTTTGATATGGTAAGTAAAATGAGCACAATACAAAATAGTATGCATACTATGATT
2001 GTGACTTTGTAAAATCTTTATGCATGTGGAAGGTAATCTGCAAAACAAATTCATTGTGTTAGTGTAGCGGGATATGGAAT
2081 GACTTTATTTATTTAAATCTTTTCTTTAATATTACTTTGTATTTTCAATAAAAATAAATCACTGTACATAGTAAAAAAAA
2161 AAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ccGUAUGUUAGAC-------UGUACAUa 5'
            :|||:|:| ||       ||||||| 
Target 5' taTATATAGTATGTATGTATACATGTAt 3'
304 - 331 155.00 -11.40
2
miRNA  3' ccGUAUGUUAG-A-CUGUACAua 5'
            ::|| || | | |||||||  
Target 5' acTGTAGAAACGTGGACATGTtt 3'
1927 - 1949 135.00 -9.90
3
miRNA  3' ccGUAUGUUAGAC-------UGUACAUa 5'
            ||||: || ||       |:||||| 
Target 5' caCATAT-ATGTGTTCATATATATGTAt 3'
206 - 232 134.00 -11.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30721007 37 COSMIC
COSN30149435 60 COSMIC
COSN28187251 90 COSMIC
COSN26639853 100 COSMIC
COSN30497007 101 COSMIC
COSN30162599 102 COSMIC
COSN31591615 155 COSMIC
COSN20097341 197 COSMIC
COSN31792746 197 COSMIC
COSN19696845 199 COSMIC
COSN20097343 199 COSMIC
COSN19655781 203 COSMIC
COSN29136751 231 COSMIC
COSN29125056 232 COSMIC
COSN29128176 234 COSMIC
COSN29133525 239 COSMIC
COSN29136167 243 COSMIC
COSN29129728 245 COSMIC
COSN29129740 246 COSMIC
COSN30545463 272 COSMIC
COSN1228495 275 COSMIC
COSN29136166 279 COSMIC
COSN19662130 301 COSMIC
COSN28887128 302 COSMIC
COSN6419120 306 COSMIC
COSN23114544 309 COSMIC
COSN30159257 344 COSMIC
COSN30615458 346 COSMIC
COSN19725044 347 COSMIC
COSN519017 372 COSMIC
COSN24392007 415 COSMIC
COSN28797197 419 COSMIC
COSN28872038 428 COSMIC
COSN31550723 475 COSMIC
COSN31596031 547 COSMIC
COSN30175244 685 COSMIC
COSN32061950 884 COSMIC
COSN26787022 1648 COSMIC
COSN19572373 1664 COSMIC
COSN25008686 1793 COSMIC
COSN14865873 2128 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1254850700 7 dbSNP
rs752759543 8 dbSNP
rs1222133021 14 dbSNP
rs1458923676 15 dbSNP
rs760734120 17 dbSNP
rs764651240 21 dbSNP
rs185300812 22 dbSNP
rs757588177 23 dbSNP
rs559976092 26 dbSNP
rs1476976906 29 dbSNP
rs1214051266 31 dbSNP
rs758008925 35 dbSNP
rs112502774 43 dbSNP
rs746522289 44 dbSNP
rs1262407478 45 dbSNP
rs1448163528 47 dbSNP
rs1190884218 48 dbSNP
rs149836052 52 dbSNP
rs768107430 52 dbSNP
rs781248721 53 dbSNP
rs1449729743 64 dbSNP
rs1011123429 69 dbSNP
rs1354446595 75 dbSNP
rs958221129 80 dbSNP
rs548877931 81 dbSNP
rs1170040698 84 dbSNP
rs1387911516 88 dbSNP
rs1409196726 90 dbSNP
rs1391043683 95 dbSNP
rs988147844 100 dbSNP
rs1452665987 101 dbSNP
rs1396906417 108 dbSNP
rs201321190 111 dbSNP
rs1191832513 112 dbSNP
rs569013475 113 dbSNP
rs1480307073 124 dbSNP
rs913864461 126 dbSNP
rs1351560003 127 dbSNP
rs1022123331 128 dbSNP
rs1434125756 131 dbSNP
rs1324004509 133 dbSNP
rs1483231324 142 dbSNP
rs1370271766 146 dbSNP
rs954753569 147 dbSNP
rs1435873942 155 dbSNP
rs531441995 156 dbSNP
rs1231537255 160 dbSNP
rs1349433108 161 dbSNP
rs1337687502 165 dbSNP
rs1301425139 167 dbSNP
rs1214403972 171 dbSNP
rs1222698540 179 dbSNP
rs1373315113 181 dbSNP
rs201950492 181 dbSNP
rs1230715648 182 dbSNP
rs1371490909 182 dbSNP
rs1491196047 182 dbSNP
rs200809967 182 dbSNP
rs551495486 182 dbSNP
rs72113382 182 dbSNP
rs762094674 182 dbSNP
rs768935902 182 dbSNP
rs781028533 182 dbSNP
rs1351630217 183 dbSNP
rs1491243263 183 dbSNP
rs571416170 184 dbSNP
rs1324037539 185 dbSNP
rs1381680478 185 dbSNP
rs1303592787 189 dbSNP
rs910645047 190 dbSNP
rs1161295372 193 dbSNP
rs1212325635 193 dbSNP
rs1457753966 193 dbSNP
rs1417070541 195 dbSNP
rs369868964 195 dbSNP
rs866800890 196 dbSNP
rs10611184 197 dbSNP
rs1484616623 197 dbSNP
rs199830050 197 dbSNP
rs748193924 197 dbSNP
rs766994418 197 dbSNP
rs774952110 197 dbSNP
rs1169471797 199 dbSNP
rs1208807636 199 dbSNP
rs1426438943 199 dbSNP
rs1491306955 199 dbSNP
rs28650176 199 dbSNP
rs1249471665 201 dbSNP
rs61101061 201 dbSNP
rs1467598182 202 dbSNP
rs878934733 203 dbSNP
rs71283525 205 dbSNP
rs1227141371 207 dbSNP
rs1266458189 207 dbSNP
rs893986720 207 dbSNP
rs1306021039 209 dbSNP
rs79825047 209 dbSNP
rs1370255226 211 dbSNP
rs1464996132 215 dbSNP
rs1189904157 216 dbSNP
rs1391360282 217 dbSNP
rs553815655 218 dbSNP
rs1491390392 219 dbSNP
rs1272765517 220 dbSNP
rs1491550670 220 dbSNP
rs1375101267 221 dbSNP
rs567023120 223 dbSNP
rs10694894 226 dbSNP
rs1200351760 226 dbSNP
rs1415641612 228 dbSNP
rs866114582 229 dbSNP
rs77986250 230 dbSNP
rs536122349 231 dbSNP
rs555819303 232 dbSNP
rs1235476286 233 dbSNP
rs1253724148 233 dbSNP
rs74986417 233 dbSNP
rs575783494 234 dbSNP
rs1308275456 235 dbSNP
rs1389491778 235 dbSNP
rs59378347 235 dbSNP
rs1433776340 236 dbSNP
rs1173857604 237 dbSNP
rs1330850562 237 dbSNP
rs74171289 237 dbSNP
rs74199882 237 dbSNP
rs1408103979 238 dbSNP
rs1420183268 238 dbSNP
rs777942831 239 dbSNP
rs1181641211 240 dbSNP
rs1378739602 240 dbSNP
rs1416124260 240 dbSNP
rs1471824546 241 dbSNP
rs796393689 241 dbSNP
rs10209283 242 dbSNP
rs1491072053 242 dbSNP
rs758689355 243 dbSNP
rs771275314 245 dbSNP
rs10186018 246 dbSNP
rs879851404 246 dbSNP
rs538102792 247 dbSNP
rs76726696 248 dbSNP
rs1273154654 249 dbSNP
rs75136260 249 dbSNP
rs1413904133 250 dbSNP
rs1353228755 251 dbSNP
rs1330425523 252 dbSNP
rs1335723463 252 dbSNP
rs1414551960 252 dbSNP
rs1156295884 253 dbSNP
rs1210115118 254 dbSNP
rs1491525451 254 dbSNP
rs144201291 255 dbSNP
rs79251354 255 dbSNP
rs878888922 257 dbSNP
rs1443087469 258 dbSNP
rs1206899675 262 dbSNP
rs1281442271 262 dbSNP
rs1446097331 263 dbSNP
rs1187750374 264 dbSNP
rs1353941485 265 dbSNP
rs529443981 265 dbSNP
rs1274002444 267 dbSNP
rs1285610396 267 dbSNP
rs373401481 268 dbSNP
rs1238821010 269 dbSNP
rs1315665597 270 dbSNP
rs1474124644 273 dbSNP
rs1323605671 274 dbSNP
rs28716685 274 dbSNP
rs1160505462 275 dbSNP
rs10209293 276 dbSNP
rs557782217 278 dbSNP
rs376419666 279 dbSNP
rs1412686027 281 dbSNP
rs1458691921 282 dbSNP
rs1165350840 283 dbSNP
rs1241708026 283 dbSNP
rs1473287428 283 dbSNP
rs1160381083 284 dbSNP
rs540200209 284 dbSNP
rs371961446 285 dbSNP
rs10209295 286 dbSNP
rs1449783970 287 dbSNP
rs1291850469 289 dbSNP
rs1228647788 290 dbSNP
rs1338402460 292 dbSNP
rs1294885274 293 dbSNP
rs1230018692 295 dbSNP
rs1400369328 295 dbSNP
rs1335164050 296 dbSNP
rs10694896 297 dbSNP
rs1436467145 297 dbSNP
rs1491455595 297 dbSNP
rs397808186 297 dbSNP
rs34911230 298 dbSNP
rs573980529 298 dbSNP
rs1361082745 299 dbSNP
rs1406293141 300 dbSNP
rs1419097743 300 dbSNP
rs202118573 300 dbSNP
rs1413396609 301 dbSNP
rs796938436 302 dbSNP
rs1293049132 303 dbSNP
rs1390931863 304 dbSNP
rs1451411372 304 dbSNP
rs1351649074 305 dbSNP
rs796114262 306 dbSNP
rs1277287917 307 dbSNP
rs1477025122 308 dbSNP
rs878878719 309 dbSNP
rs1200498581 310 dbSNP
rs1222059474 310 dbSNP
rs1436975896 310 dbSNP
rs1280377585 311 dbSNP
rs11444477 312 dbSNP
rs1306549378 312 dbSNP
rs1370266435 312 dbSNP
rs1431936016 312 dbSNP
rs1484475990 313 dbSNP
rs878867310 314 dbSNP
rs62173315 315 dbSNP
rs796308519 316 dbSNP
rs1252194449 317 dbSNP
rs1191635741 319 dbSNP
rs1473551954 319 dbSNP
rs530923523 323 dbSNP
rs1179513612 325 dbSNP
rs1469452276 326 dbSNP
rs1249418908 327 dbSNP
rs67414347 327 dbSNP
rs10186045 329 dbSNP
rs1469730016 331 dbSNP
rs1207435236 333 dbSNP
rs1173231598 335 dbSNP
rs1281350730 335 dbSNP
rs1220257701 337 dbSNP
rs1377565732 339 dbSNP
rs1387267547 339 dbSNP
rs200379978 340 dbSNP
rs1412043358 342 dbSNP
rs1351366513 343 dbSNP
rs1302442871 344 dbSNP
rs1360910791 344 dbSNP
rs1464615121 344 dbSNP
rs770707444 344 dbSNP
rs1176865519 345 dbSNP
rs535633796 345 dbSNP
rs1380674582 346 dbSNP
rs867276575 346 dbSNP
rs10164488 347 dbSNP
rs1472765386 349 dbSNP
rs546047010 349 dbSNP
rs1179680067 351 dbSNP
rs1256401313 351 dbSNP
rs1483953368 353 dbSNP
rs1214426027 358 dbSNP
rs1237619528 358 dbSNP
rs1327479897 358 dbSNP
rs1329133485 358 dbSNP
rs1335679954 360 dbSNP
rs112118668 361 dbSNP
rs1330166603 361 dbSNP
rs1312301575 363 dbSNP
rs1394569717 363 dbSNP
rs1255853074 365 dbSNP
rs1381606538 365 dbSNP
rs1303536183 366 dbSNP
rs1233409694 367 dbSNP
rs1386382725 367 dbSNP
rs138903414 368 dbSNP
rs767203531 368 dbSNP
rs1457576170 369 dbSNP
rs1345293091 370 dbSNP
rs1449644613 371 dbSNP
rs1185454707 372 dbSNP
rs1414044424 372 dbSNP
rs58026861 372 dbSNP
rs75622614 372 dbSNP
rs1463131153 373 dbSNP
rs1246736500 374 dbSNP
rs1294493810 376 dbSNP
rs1265295963 377 dbSNP
rs551609395 377 dbSNP
rs1233064058 378 dbSNP
rs398060766 378 dbSNP
rs1275120962 379 dbSNP
rs1491049857 379 dbSNP
rs1491206485 379 dbSNP
rs10200721 380 dbSNP
rs1491146905 380 dbSNP
rs1275562607 381 dbSNP
rs1438557485 382 dbSNP
rs1204786493 383 dbSNP
rs1350142359 385 dbSNP
rs1459207290 385 dbSNP
rs879170562 387 dbSNP
rs1430352026 388 dbSNP
rs1249669087 389 dbSNP
rs1486721163 390 dbSNP
rs1188637757 391 dbSNP
rs1249814076 393 dbSNP
rs1429668211 394 dbSNP
rs1452097345 394 dbSNP
rs1199693245 395 dbSNP
rs867621994 395 dbSNP
rs1208451373 396 dbSNP
rs1037873162 397 dbSNP
rs1396895742 397 dbSNP
rs1204628782 398 dbSNP
rs1340283715 398 dbSNP
rs1452830989 399 dbSNP
rs527402999 400 dbSNP
rs1173299128 403 dbSNP
rs1390984174 405 dbSNP
rs532249543 406 dbSNP
rs920842697 407 dbSNP
rs1307169242 409 dbSNP
rs1427502221 412 dbSNP
rs1371991467 413 dbSNP
rs547541103 413 dbSNP
rs71006031 413 dbSNP
rs773228233 413 dbSNP
rs774462624 413 dbSNP
rs111564257 415 dbSNP
rs1435290107 415 dbSNP
rs1166500157 416 dbSNP
rs1181902736 417 dbSNP
rs1469355 417 dbSNP
rs1482225711 419 dbSNP
rs199777191 419 dbSNP
rs1327373852 420 dbSNP
rs1368091420 421 dbSNP
rs1439495613 425 dbSNP
rs1213011206 426 dbSNP
rs747322974 426 dbSNP
rs1254195776 427 dbSNP
rs1297934874 428 dbSNP
rs1047993108 431 dbSNP
rs1343853215 434 dbSNP
rs1407739158 435 dbSNP
rs1225045355 441 dbSNP
rs999256023 451 dbSNP
rs1308214198 452 dbSNP
rs1394947142 453 dbSNP
rs569452419 454 dbSNP
rs1399363315 456 dbSNP
rs1173807730 461 dbSNP
rs1468088745 475 dbSNP
rs1430569407 476 dbSNP
rs191192706 481 dbSNP
rs10164599 483 dbSNP
rs1182729962 487 dbSNP
rs1442051976 488 dbSNP
rs1254254286 492 dbSNP
rs1211513488 498 dbSNP
rs1046170114 500 dbSNP
rs1251035994 501 dbSNP
rs1324258655 503 dbSNP
rs112226984 506 dbSNP
rs1330862043 517 dbSNP
rs1018234191 520 dbSNP
rs115067671 525 dbSNP
rs1338330586 534 dbSNP
rs1335666600 535 dbSNP
rs974013613 537 dbSNP
rs537159068 543 dbSNP
rs1032620931 553 dbSNP
rs554011111 559 dbSNP
rs950832923 560 dbSNP
rs983471932 570 dbSNP
rs927987988 583 dbSNP
rs1472616764 600 dbSNP
rs1009876725 603 dbSNP
rs1020875059 609 dbSNP
rs939317138 610 dbSNP
rs1055060098 613 dbSNP
rs916520474 616 dbSNP
rs79547571 618 dbSNP
rs1043979061 619 dbSNP
rs556975006 623 dbSNP
rs902332666 624 dbSNP
rs1227497676 628 dbSNP
rs562758921 631 dbSNP
rs1460528660 632 dbSNP
rs1320626351 635 dbSNP
rs1363754061 636 dbSNP
rs1294751583 638 dbSNP
rs770619130 653 dbSNP
rs973472347 654 dbSNP
rs1363656187 660 dbSNP
rs1319452853 667 dbSNP
rs1380103057 668 dbSNP
rs1294623631 675 dbSNP
rs1340895171 688 dbSNP
rs999287117 689 dbSNP
rs868811493 690 dbSNP
rs576271154 695 dbSNP
rs1050807625 698 dbSNP
rs1186750940 699 dbSNP
rs920736469 714 dbSNP
rs545193816 725 dbSNP
rs1220595869 730 dbSNP
rs1268772262 731 dbSNP
rs1341016530 733 dbSNP
rs772367661 742 dbSNP
rs1161183475 743 dbSNP
rs1329650799 743 dbSNP
rs376694302 743 dbSNP
rs386391780 743 dbSNP
rs386391781 743 dbSNP
rs58044311 743 dbSNP
rs1486988166 745 dbSNP
rs1325922836 748 dbSNP
rs1425607366 749 dbSNP
rs1370152404 752 dbSNP
rs1184956365 753 dbSNP
rs890796739 753 dbSNP
rs565049965 757 dbSNP
rs1017931363 759 dbSNP
rs1424802510 760 dbSNP
rs965370695 765 dbSNP
rs1190495436 772 dbSNP
rs866654386 780 dbSNP
rs1476993010 795 dbSNP
rs995081442 800 dbSNP
rs1028252068 806 dbSNP
rs950863120 807 dbSNP
rs983503213 811 dbSNP
rs1271982562 821 dbSNP
rs10188787 823 dbSNP
rs1307496019 824 dbSNP
rs949028763 826 dbSNP
rs1219213295 831 dbSNP
rs1343483641 831 dbSNP
rs757808086 831 dbSNP
rs1405908809 839 dbSNP
rs1350122851 840 dbSNP
rs1306339349 859 dbSNP
rs772363673 863 dbSNP
rs991269687 864 dbSNP
rs1355247402 869 dbSNP
rs1346414953 872 dbSNP
rs916568792 883 dbSNP
rs937716938 885 dbSNP
rs1450967526 889 dbSNP
rs1176921034 890 dbSNP
rs1472121355 892 dbSNP
rs1183819246 907 dbSNP
rs1236452023 908 dbSNP
rs1287965623 908 dbSNP
rs946651554 908 dbSNP
rs893591991 910 dbSNP
rs1265489147 918 dbSNP
rs1224541667 924 dbSNP
rs1043618533 927 dbSNP
rs923787015 928 dbSNP
rs935111382 931 dbSNP
rs1050838424 933 dbSNP
rs868615872 936 dbSNP
rs1302387321 941 dbSNP
rs1006639313 946 dbSNP
rs540128207 947 dbSNP
rs890412161 959 dbSNP
rs1008834729 968 dbSNP
rs1184348322 969 dbSNP
rs1418177264 972 dbSNP
rs1307821070 975 dbSNP
rs1318865977 979 dbSNP
rs1412591609 1004 dbSNP
rs1179629904 1006 dbSNP
rs1483923073 1028 dbSNP
rs1213697734 1039 dbSNP
rs77792245 1042 dbSNP
rs1464837360 1048 dbSNP
rs964699712 1048 dbSNP
rs1483695231 1049 dbSNP
rs1213486894 1051 dbSNP
rs973856281 1057 dbSNP
rs767342459 1060 dbSNP
rs114718323 1061 dbSNP
rs1312235252 1064 dbSNP
rs1226689185 1072 dbSNP
rs181876452 1084 dbSNP
rs1005044274 1087 dbSNP
rs1045381 1089 dbSNP
rs960803416 1098 dbSNP
rs990908932 1102 dbSNP
rs1416862014 1118 dbSNP
rs1386319667 1119 dbSNP
rs1157714479 1128 dbSNP
rs1454075489 1142 dbSNP
rs1348975480 1144 dbSNP
rs1024067771 1147 dbSNP
rs1436122689 1181 dbSNP
rs1310873325 1185 dbSNP
rs1162179077 1190 dbSNP
rs1446071180 1219 dbSNP
rs1385390469 1220 dbSNP
rs917468885 1226 dbSNP
rs569500544 1232 dbSNP
rs1449444707 1239 dbSNP
rs1410188551 1242 dbSNP
rs1188694380 1250 dbSNP
rs1299860761 1269 dbSNP
rs1371092045 1277 dbSNP
rs1265102304 1281 dbSNP
rs1222198025 1287 dbSNP
rs1306311936 1299 dbSNP
rs1348876690 1300 dbSNP
rs1292640690 1301 dbSNP
rs950306335 1304 dbSNP
rs1360623945 1309 dbSNP
rs1362970944 1310 dbSNP
rs980365613 1324 dbSNP
rs979759183 1326 dbSNP
rs1366571132 1328 dbSNP
rs1291567834 1340 dbSNP
rs1426208959 1342 dbSNP
rs773273308 1343 dbSNP
rs538169308 1344 dbSNP
rs1278664705 1348 dbSNP
rs1267180435 1350 dbSNP
rs1485571986 1353 dbSNP
rs1197672437 1354 dbSNP
rs1490915320 1358 dbSNP
rs1269808557 1366 dbSNP
rs1204561829 1369 dbSNP
rs1205655930 1371 dbSNP
rs1253021204 1374 dbSNP
rs1228149232 1390 dbSNP
rs763029677 1417 dbSNP
rs1298988818 1419 dbSNP
rs1406493908 1423 dbSNP
rs1345790368 1426 dbSNP
rs1235155779 1437 dbSNP
rs766053377 1445 dbSNP
rs1398087925 1448 dbSNP
rs1377535861 1449 dbSNP
rs551687623 1450 dbSNP
rs114219634 1452 dbSNP
rs754068874 1453 dbSNP
rs759058488 1460 dbSNP
rs945202212 1461 dbSNP
rs59046645 1463 dbSNP
rs1252802927 1468 dbSNP
rs1171413582 1470 dbSNP
rs1394072474 1502 dbSNP
rs1430249269 1508 dbSNP
rs1344639 1509 dbSNP
rs1225123400 1512 dbSNP
rs1323925185 1521 dbSNP
rs898158278 1523 dbSNP
rs186195030 1526 dbSNP
rs1046708032 1536 dbSNP
rs1226258816 1543 dbSNP
rs1329000346 1544 dbSNP
rs1337125995 1544 dbSNP
rs79508887 1545 dbSNP
rs755615978 1551 dbSNP
rs1035182374 1557 dbSNP
rs1471168294 1557 dbSNP
rs1407373395 1561 dbSNP
rs1158850663 1564 dbSNP
rs147460832 1567 dbSNP
rs1301606380 1568 dbSNP
rs896621317 1569 dbSNP
rs1366044968 1577 dbSNP
rs1344640 1585 dbSNP
rs1423255027 1596 dbSNP
rs1241215868 1599 dbSNP
rs1344641 1600 dbSNP
rs968459673 1616 dbSNP
rs950851274 1618 dbSNP
rs570795087 1619 dbSNP
rs1031004578 1638 dbSNP
rs1203132466 1640 dbSNP
rs1352422035 1640 dbSNP
rs1204375510 1642 dbSNP
rs956631816 1645 dbSNP
rs971576466 1647 dbSNP
rs1469453307 1648 dbSNP
rs1338132036 1652 dbSNP
rs1191206277 1659 dbSNP
rs78093358 1665 dbSNP
rs1407450275 1678 dbSNP
rs535236945 1684 dbSNP
rs927540424 1697 dbSNP
rs942509542 1698 dbSNP
rs1387423770 1704 dbSNP
rs572264440 1705 dbSNP
rs1475506328 1706 dbSNP
rs541229431 1709 dbSNP
rs1383545224 1711 dbSNP
rs1188054451 1712 dbSNP
rs751117138 1719 dbSNP
rs1247285328 1721 dbSNP
rs1417077905 1722 dbSNP
rs560998061 1724 dbSNP
rs959291401 1725 dbSNP
rs1396588863 1733 dbSNP
rs989202358 1737 dbSNP
rs60738076 1744 dbSNP
rs1246012952 1751 dbSNP
rs779100732 1756 dbSNP
rs1370536603 1759 dbSNP
rs945175679 1762 dbSNP
rs1431698367 1788 dbSNP
rs931055097 1788 dbSNP
rs141284261 1791 dbSNP
rs1045373 1801 dbSNP
rs940962889 1802 dbSNP
rs1165569577 1812 dbSNP
rs532014808 1815 dbSNP
rs1274424734 1816 dbSNP
rs551651368 1824 dbSNP
rs944549603 1830 dbSNP
rs1242556624 1834 dbSNP
rs191961197 1838 dbSNP
rs1489733150 1840 dbSNP
rs1270543770 1847 dbSNP
rs1211299190 1849 dbSNP
rs183290924 1850 dbSNP
rs35586661 1858 dbSNP
rs758486882 1860 dbSNP
rs547686454 1865 dbSNP
rs747556716 1866 dbSNP
rs1213402019 1868 dbSNP
rs1049087341 1871 dbSNP
rs377171977 1872 dbSNP
rs536324897 1876 dbSNP
rs1024400680 1879 dbSNP
rs1305114493 1880 dbSNP
rs1217433606 1887 dbSNP
rs903975407 1893 dbSNP
rs1045375 1911 dbSNP
rs371904169 1918 dbSNP
rs1031037020 1924 dbSNP
rs538315930 1928 dbSNP
rs956662562 1938 dbSNP
rs1419953803 1939 dbSNP
rs188290971 1955 dbSNP
rs1162914969 1960 dbSNP
rs1430996696 1962 dbSNP
rs1019509087 1972 dbSNP
rs11675616 1979 dbSNP
rs558840958 1980 dbSNP
rs975313343 1982 dbSNP
rs768829889 1984 dbSNP
rs919738643 1986 dbSNP
rs1223284160 1987 dbSNP
rs1430538094 1990 dbSNP
rs1294234101 1991 dbSNP
rs1285566255 1996 dbSNP
rs539355828 1998 dbSNP
rs1372832843 2015 dbSNP
rs966781364 2017 dbSNP
rs952523863 2021 dbSNP
rs1355043319 2022 dbSNP
rs1231955673 2037 dbSNP
rs1468157714 2044 dbSNP
rs776887228 2058 dbSNP
rs977776501 2063 dbSNP
rs908233237 2069 dbSNP
rs572379445 2070 dbSNP
rs541184927 2072 dbSNP
rs376321666 2082 dbSNP
rs1233977189 2084 dbSNP
rs539827747 2084 dbSNP
rs1460367174 2085 dbSNP
rs59839748 2089 dbSNP
rs1049471011 2100 dbSNP
rs866520578 2100 dbSNP
rs1305055696 2112 dbSNP
rs886404958 2115 dbSNP
rs940697064 2125 dbSNP
rs1314463020 2128 dbSNP
rs1045259264 2129 dbSNP
rs1384884211 2130 dbSNP
rs147349894 2133 dbSNP
rs869203381 2133 dbSNP
rs1452729075 2147 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293
Disease 151230.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "HITS-CLIP data was present in GSM714642. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714642
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000392647.2 | 3UTR | UAUGUGUAUAUAUACGUAUGUAUGUAUACAUAUAUGUGUAUACAUAUAUAUGUGUGUAUAUAUAUACACAUAUAUACGUAUAUAUGUGUAUAUAUAUACACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
83 hsa-miR-4666a-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057266 FAM35A family with sequence similarity 35 member A 2 2
MIRT059969 PATL1 PAT1 homolog 1, processing body mRNA decay factor 2 6
MIRT079031 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT079631 DNAJB4 DnaJ heat shock protein family (Hsp40) member B4 2 2
MIRT086974 LANCL1 LanC like 1 2 2
MIRT091804 GOLGA4 golgin A4 2 2
MIRT229501 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 4
MIRT255972 WDR17 WD repeat domain 17 2 2
MIRT262975 ADO 2-aminoethanethiol dioxygenase 2 2
MIRT264774 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 2
MIRT334169 CCND1 cyclin D1 2 6
MIRT345868 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT452477 DDX4 DEAD-box helicase 4 2 2
MIRT455764 TSPAN6 tetraspanin 6 2 4
MIRT461627 DCAF15 DDB1 and CUL4 associated factor 15 2 4
MIRT465169 TRPV2 transient receptor potential cation channel subfamily V member 2 2 4
MIRT468950 RPS14 ribosomal protein S14 2 6
MIRT483236 C2orf72 chromosome 2 open reading frame 72 2 8
MIRT498544 TMEM30B transmembrane protein 30B 2 2
MIRT500633 TXNIP thioredoxin interacting protein 2 4
MIRT504113 GPR158 G protein-coupled receptor 158 2 2
MIRT504428 ZNF85 zinc finger protein 85 2 6
MIRT505036 ZNF451 zinc finger protein 451 2 2
MIRT506526 MRPL17 mitochondrial ribosomal protein L17 2 6
MIRT508773 GSG1 germ cell associated 1 2 2
MIRT517297 ELF4 E74 like ETS transcription factor 4 2 6
MIRT519353 OBFC1 STN1, CST complex subunit 2 4
MIRT523891 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 6
MIRT527509 ZNF134 zinc finger protein 134 2 2
MIRT531218 IFNGR2 interferon gamma receptor 2 2 2
MIRT535957 MOGAT1 monoacylglycerol O-acyltransferase 1 2 2
MIRT537229 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 4
MIRT537337 FKBP5 FK506 binding protein 5 2 2
MIRT539125 ARHGEF17 Rho guanine nucleotide exchange factor 17 2 2
MIRT539910 ISPD isoprenoid synthase domain containing 2 2
MIRT541527 MGAT4C MGAT4 family member C 2 2
MIRT546119 USP25 ubiquitin specific peptidase 25 2 2
MIRT548846 CERCAM cerebral endothelial cell adhesion molecule 2 2
MIRT549892 LINC00955 long intergenic non-protein coding RNA 955 2 2
MIRT549898 ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide 2 2
MIRT550763 ENOX2 ecto-NOX disulfide-thiol exchanger 2 2 4
MIRT553200 UBE2A ubiquitin conjugating enzyme E2 A 2 2
MIRT553970 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT554092 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555208 PROX1 prospero homeobox 1 2 4
MIRT555834 PAX5 paired box 5 2 4
MIRT556865 JAZF1 JAZF zinc finger 1 2 2
MIRT558594 CREBL2 cAMP responsive element binding protein like 2 2 2
MIRT559690 AGO2 argonaute 2, RISC catalytic component 2 4
MIRT563312 ORC4 origin recognition complex subunit 4 2 2
MIRT563585 FAM229B family with sequence similarity 229 member B 2 2
MIRT563853 ALYREF Aly/REF export factor 2 4
MIRT565146 TUBB2A tubulin beta 2A class IIa 2 2
MIRT565769 SEPHS1 selenophosphate synthetase 1 2 2
MIRT568317 BACH1 BTB domain and CNC homolog 1 2 2
MIRT575387 Unc5b unc-5 netrin receptor B 2 4
MIRT607728 BDH1 3-hydroxybutyrate dehydrogenase 1 2 8
MIRT612691 PLXNA4 plexin A4 2 4
MIRT615916 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT629792 P2RY1 purinergic receptor P2Y1 2 2
MIRT632119 FKBP9 FK506 binding protein 9 2 2
MIRT645554 ZDHHC15 zinc finger DHHC-type containing 15 2 4
MIRT651479 WWC3 WWC family member 3 2 2
MIRT654138 RPH3A rabphilin 3A 2 6
MIRT655191 PHAX phosphorylated adaptor for RNA export 2 2
MIRT665543 UNC5B unc-5 netrin receptor B 2 5
MIRT668057 GRIK3 glutamate ionotropic receptor kainate type subunit 3 2 2
MIRT678978 CERS4 ceramide synthase 4 2 4
MIRT679124 RBM3 RNA binding motif (RNP1, RRM) protein 3 2 2
MIRT686776 AZF1 azoospermia factor 1 2 2
MIRT687144 PTPN12 protein tyrosine phosphatase, non-receptor type 12 2 2
MIRT691453 C21orf58 chromosome 21 open reading frame 58 2 2
MIRT691469 FAM98B family with sequence similarity 98 member B 2 2
MIRT697031 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT698401 TM9SF3 transmembrane 9 superfamily member 3 2 2
MIRT702056 RNMT RNA guanine-7 methyltransferase 2 2
MIRT705903 ADAM9 ADAM metallopeptidase domain 9 2 2
MIRT707491 MMADHC methylmalonic aciduria and homocystinuria, cblD type 2 2
MIRT708080 KLHL23 kelch like family member 23 2 2
MIRT709738 TRIM27 tripartite motif containing 27 2 2
MIRT710056 RWDD2A RWD domain containing 2A 2 2
MIRT710226 KCNK1 potassium two pore domain channel subfamily K member 1 2 2
MIRT712043 STYK1 serine/threonine/tyrosine kinase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4666a Doxorubicin 31703 NSC123127 approved sensitive High Triple-Negative Breast Cancer cell line (MDA-MB-231, MDA-MB-468)

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