pre-miRNA Information
pre-miRNA hsa-mir-412   
Genomic Coordinates chr14: 101065447 - 101065537
Synonyms MIRN412, hsa-mir-412, MIR412
Description Homo sapiens miR-412 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-412-3p
Sequence 54| ACUUCACCUGGUCCACUAGCCGU |76
Evidence Not_experimental
Experiments
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
rs61992671 18 GWAS
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs369997462 1 dbSNP
rs1439693090 7 dbSNP
rs1301668924 11 dbSNP
rs534204576 13 dbSNP
rs775386036 14 dbSNP
rs762832140 15 dbSNP
rs1203323285 16 dbSNP
rs61992671 18 dbSNP
rs1022012324 19 dbSNP
rs1207609936 20 dbSNP
rs139967426 21 dbSNP
rs539487075 22 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZNF260   
Synonyms OZRF1, PEX1, ZFP260
Description zinc finger protein 260
Transcript NM_001012756   
Other Transcripts NM_001166036 , NM_001166037 , NM_001166038   
Expression
Putative miRNA Targets on ZNF260
3'UTR of ZNF260
(miRNA target sites are highlighted)
>ZNF260|NM_001012756|3'UTR
   1 AGTTCTCTATGAATGCCTTGGATTTAGCAAAACGTTCAGCAGATTTTACACTTAATAGTGTATTGGAAAATTCATTTTAC
  81 ATTAAAGTGACATGAATGTGGGAAGTCCTTCAGCAGCAATTCAAAACTTAAATACTATGATGTTTAATAAGTATTATAGT
 161 GTAAAGAAAACCCGTACCCCCAAAACTCCCACAACAAGCATTATCAATGCTGTACTTCTAGGAGTATACTCATTAAAGTT
 241 AGGATCTAGTCATGGACACTACTTAATGTGTTCCTGGAAGGCCTACAGATGCATTAAGAAATAGATATGAGATGTATGAG
 321 GATTTGAAATTAAGAGACAAAATTATCATTTTTGTGATGTTTTGCTACATATATGAATTGTAAAACTAGAATCATCAAAA
 401 TTATTTGTTGTTGAAGCAGTCATAAAACTGAGACTGAGACAGAATATTGAATTCAGAAATGTGTGCATGAATATATGGGG
 481 AATTGGTAATTGATAGAGGCGGTATCCCAGATTGGTGGGGAAATCATGGATTACTTAAAAATTAATTGACTCTTCATATG
 561 GAAAAATAATATCTCCCATCATAATATAAAATATTTTTCTTATGAATTCTTAAAGTACTAAAGACTAAAATGCAAAAAGC
 641 AATACTTAATAATATAACAGTTTTATAAGAAGATGTTTTTAAAACCTTAGGGCAGGAAAGAACTTCTAAAACATTCCAGA
 721 ATACCCGGTAGTTCCACTCTTGAGTATGGTAGTCCCCTATTTTCTGCAAGAGATGGACTCTAAGACCCCCAGTGGATACC
 801 TAAAACCCAGATAGGACCAAACTCTATGTCTATGTTTTTTTCTTATATATACATACCTATGATAAAATTTAGTTTACAGA
 881 TTAGACACAGCAAGAGATTTAAAACAATAATAAACATAATATGGAACAATTATAACAATATACTGTAATCATAAAAGTTA
 961 TGTGAATATGATCTTTCTCTCAGAATACCTTATTGTACTGTTCTCAACTATTTATGAACTGTGGTGACTACAGGTAACTG
1041 AAACCATGGAAAGCAAAGCTGTGGATAAGGGGGAACTACTATATATATGCATCTACCCAAGAAACATGAACACAGGGAGT
1121 CATGTACTGGTCTATAGCTGTATAGTTCATTGCACCATGAGTTATAGTAGCCAGAAGTTGGGAAACAAATGCTGTCTCTT
1201 GTGAAATAGATGAATAAAATGTGATAGTAACATAGTAGAGTACTCTCTAGCAGTTAAGTGACAAATTAAGTCTATATATT
1281 AACAGAAATATTTTTAAAAAATTAGAGTGAAGAAAAATGATGAACATATTGTAATGATGCTTCTGTGAATTTGAATAAAA
1361 TCAACACTAACCAGCCCTAGTACTAAGAATTGGTTATGGATAAATTATGTAAAACTAAAGAATGGATTGAAAGGATATGT
1441 ATATACTCAGTTCCCAAAAGTGGAGTGGTTACCTCTAGGAAGAAAGGAGGTGGAAGGGAAATGTTACCAAGCATGGTAGT
1521 TAAAGGATACTTCAATTTTGTATCTATTTCTTATTAAAAAGAAACATTCTAAGTAAACATAACGAAATATTAATTCTGGG
1601 TGGTGGTAATATTTGTGTTCATTCTATCATTCGTGCTATTTATTTCCTTAAACTTCTGAAAGTTAAAAAGTCCAGATAGG
1681 AGTGAGGAAGCTGTACATGAAACATAATGGACTTACATTCCTAGTCAGATACTAATATTCTGTAGAAGATATTTCTAAAA
1761 TCTTATCTTTAAAATATGAAATAATTTTTAATTGGGGTGGCAACTTAAATTCAATTAAAATAACTCATGTGTCACAAGAG
1841 TAAATTTTACATAATCTGTACGTAGTTCTAATCTGTATATAGTCTTGGAGGTTATGATTTGCCACAGATTGGTTGGATCA
1921 CATACATTTAAGGATCATATTATTAAATAATATATGCACAGACATGGAGAGAATTAGTTTTTACTAAAACATTTATCAGA
2001 AATTTTAATACTCTGCATAACCAGTATTAGCATTAGAAATTAGCCACTTTTAAAATGAGAAAACTGTGTCACTCTTCAAT
2081 TTTTTTATAAGCCATTGAGGAAAACATTAACTCCTGGATTTCAGCTTCACTTTTAACCTGCAGACTAAATTTCTTTCTCA
2161 ATTATGTCAGACACACCCAAGTCAATCCCAACCCCCTTGTTACCTTGGGAAGACCGTGCTGAAAAAGGAGATCTTCCACC
2241 TAAACAGTGTTCTCTTATTTGAAGCAAATCTTTTTGAGAATTTGTTTACTTGATTTCTTTCCACAATAAACTGACAGAGA
2321 ACGCTACTAATGATTTTTTTTTTTTTTTGAGACGGAGTTTTGTTCTTGTTGCCCAGGCTGCAGTGCAATGGCACAATCTT
2401 GGCTCACTGCAACCTCTGCCTCACAGGTTCAAGTGGTTCTCCTGCCTCAGCCTCTTGAGTAGCTGGGATTACAGGCATGC
2481 GCCACCATGCCCGGCTAATTTTGTATTTTTAGTAGAGACGGAGTTGCACCATGTTGGCCAGGCTGGTCTTGAATTCCTGA
2561 CCTCAGGTGATCCACCTGCTTCGGCCTCCCAAAGTGCTAGGATTACAGGTGTGAGCCACCACGCCTGGCTAATTTTGTAT
2641 TTTTAGTAGAGATGGGGTTTCTCCAAAGGCTGGTCTTGAACTCCCGACCTCAGGTGATCCGCCCACCTTGGCCTCCCGAA
2721 GTGCTGGGATTACAGGCGTGAGCCACCGTGCCCGGCCTGATGTTTTTGAATGATTATGAAAATGGGTATACAGCATTAAA
2801 ACCTTAGACTGATTTTAAATATATTAATTTCTTTTAAACTCAATATAATGTTAATATTACTGTAGCACTTACTAGCATTT
2881 CTGAAGGTTGGTCTTGAGATAAGATTGAAAATGACAGTTGTTGATTTTCTGAGGTAATATACCCAAATAAAATATATGTA
2961 TGTGTACATGAATCTAAACTGTCTTCTTCTGTTCCTCATTTTGCTTTACTTAAATAATCTTTCATATTTTTTAAGTGTTT
3041 TGCCCATGTGCTTGGGTAGCCTTGAAGTCACCAGAATAACTAGGACTCAAATTCAGACCAAACCAGGACTAGCTTTTTGT
3121 GCCATGAGTTAGCCATGGTCCTGGACCCAGCAAAAAGAATGATTATGATGGTCAGAGTAAGATGAGCAATTGCAACATAA
3201 TATTCTCTAATATTGTATACTGTAAATTTATTCAGCTGCCCTCGTTTACTCACAGTTTGCTTATTTGCCACCATAAGAAA
3281 TGGTACAATAAAAATTCATGTAATCACCCCTTA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugccgaucaccuggucCACUUCa 5'
                          |||||| 
Target 5' tttttaaaaaattagaGTGAAGa 3'
1291 - 1313 120.00 -10.00
2
miRNA  3' ugCCGAUC---AC-------CUG--GUCCACUuca 5'
            ||||:|   ||       |||  |||||||   
Target 5' caGGCTGGTCTTGAATTCCTGACCTCAGGTGAtcc 3'
2539 - 2573 119.00 -19.32
3
miRNA  3' ugCCGAUC---AC-------CUG--GUCCACUuca 5'
            ||||:|   ||       |||  |||||||   
Target 5' aaGGCTGGTCTTGAACTCCCGACCTCAGGTGAtcc 3'
2666 - 2700 119.00 -18.62
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30135343 5 COSMIC
COSN30177361 5 COSMIC
COSN30533818 27 COSMIC
COSN31566958 33 COSMIC
COSN31593158 34 COSMIC
COSN30127820 70 COSMIC
COSN30113254 128 COSMIC
COSN30128951 138 COSMIC
COSN9849811 255 COSMIC
COSN7125704 731 COSMIC
COSN9849810 857 COSMIC
COSN6143535 867 COSMIC
COSN22913538 901 COSMIC
COSN20287238 1206 COSMIC
COSN16487600 1307 COSMIC
COSN15661250 1889 COSMIC
COSN6143534 2010 COSMIC
COSN16765520 2039 COSMIC
COSN7125703 2082 COSMIC
COSN20115767 2171 COSMIC
COSN20115766 2334 COSMIC
COSN20607197 2495 COSMIC
COSN5802172 2520 COSMIC
COSN4907199 2554 COSMIC
COSN4907198 2580 COSMIC
COSN29915662 2797 COSMIC
COSN1214951 3135 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1163675310 7 dbSNP
rs1477997637 9 dbSNP
rs769403421 10 dbSNP
rs1286105614 12 dbSNP
rs776515747 15 dbSNP
rs770739958 20 dbSNP
rs1319836826 23 dbSNP
rs1487920905 28 dbSNP
rs760408628 31 dbSNP
rs372190500 33 dbSNP
rs532230815 34 dbSNP
rs908134044 39 dbSNP
rs1265479805 58 dbSNP
rs993088912 74 dbSNP
rs1490710346 92 dbSNP
rs939055784 96 dbSNP
rs927635862 97 dbSNP
rs934286718 107 dbSNP
rs1450650344 119 dbSNP
rs980960792 135 dbSNP
rs1410704171 149 dbSNP
rs1404066476 151 dbSNP
rs1268573244 157 dbSNP
rs561986973 158 dbSNP
rs1350999880 162 dbSNP
rs17238977 165 dbSNP
rs1306270311 169 dbSNP
rs914950611 171 dbSNP
rs916779194 172 dbSNP
rs188750572 173 dbSNP
rs73931035 174 dbSNP
rs866966655 177 dbSNP
rs369962458 179 dbSNP
rs1361542276 183 dbSNP
rs920168256 194 dbSNP
rs542343637 197 dbSNP
rs1008796348 205 dbSNP
rs954902733 207 dbSNP
rs961633971 212 dbSNP
rs1029007592 215 dbSNP
rs996558289 220 dbSNP
rs1331897530 222 dbSNP
rs763072549 224 dbSNP
rs796852295 236 dbSNP
rs1181674439 238 dbSNP
rs987260814 243 dbSNP
rs899251360 247 dbSNP
rs373895975 248 dbSNP
rs1166785015 249 dbSNP
rs1370099289 249 dbSNP
rs1410712199 252 dbSNP
rs1331182343 255 dbSNP
rs1037756500 260 dbSNP
rs1446965404 274 dbSNP
rs1005090794 275 dbSNP
rs886606383 285 dbSNP
rs1057511196 288 dbSNP
rs1226164931 289 dbSNP
rs954142101 291 dbSNP
rs1028200125 292 dbSNP
rs1011407275 293 dbSNP
rs938936312 298 dbSNP
rs927510702 301 dbSNP
rs1441494547 307 dbSNP
rs185351469 308 dbSNP
rs1244199908 309 dbSNP
rs957282656 310 dbSNP
rs572127215 312 dbSNP
rs1187268465 331 dbSNP
rs1169751668 334 dbSNP
rs557645695 334 dbSNP
rs1410439965 336 dbSNP
rs1423243108 340 dbSNP
rs536026533 347 dbSNP
rs906836691 348 dbSNP
rs553441176 357 dbSNP
rs192615649 359 dbSNP
rs73931034 367 dbSNP
rs1477523925 369 dbSNP
rs947689357 371 dbSNP
rs1432781704 372 dbSNP
rs1324690192 374 dbSNP
rs1365884261 391 dbSNP
rs79497570 395 dbSNP
rs559288330 403 dbSNP
rs537766606 404 dbSNP
rs112974086 410 dbSNP
rs1201051902 410 dbSNP
rs1013101925 414 dbSNP
rs1251484904 416 dbSNP
rs1205891704 438 dbSNP
rs1264107180 440 dbSNP
rs1440029695 444 dbSNP
rs1326154662 447 dbSNP
rs915024407 457 dbSNP
rs1276674645 460 dbSNP
rs1448086347 461 dbSNP
rs989186672 467 dbSNP
rs1195344247 473 dbSNP
rs570133290 483 dbSNP
rs548777356 488 dbSNP
rs1285439242 492 dbSNP
rs1431748202 494 dbSNP
rs536323100 500 dbSNP
rs769980500 501 dbSNP
rs1402438157 519 dbSNP
rs1287451617 520 dbSNP
rs1321012893 530 dbSNP
rs1330047649 531 dbSNP
rs1442916023 533 dbSNP
rs796743357 550 dbSNP
rs954669373 552 dbSNP
rs1348273358 554 dbSNP
rs1226869546 558 dbSNP
rs912583181 560 dbSNP
rs1029286331 573 dbSNP
rs866422011 575 dbSNP
rs1352008735 577 dbSNP
rs1207478047 578 dbSNP
rs566170446 578 dbSNP
rs77992302 589 dbSNP
rs963366362 611 dbSNP
rs1451061069 614 dbSNP
rs1200270167 615 dbSNP
rs954144457 619 dbSNP
rs150365367 631 dbSNP
rs1181175560 641 dbSNP
rs768960955 646 dbSNP
rs1016398595 653 dbSNP
rs189759208 654 dbSNP
rs957170709 658 dbSNP
rs1031608714 674 dbSNP
rs1304433849 675 dbSNP
rs999209531 676 dbSNP
rs886637755 680 dbSNP
rs1178170157 697 dbSNP
rs1057315659 703 dbSNP
rs1336764388 712 dbSNP
rs1241654687 716 dbSNP
rs1282901529 721 dbSNP
rs1471392660 726 dbSNP
rs1003412649 727 dbSNP
rs1482196310 735 dbSNP
rs1411740594 740 dbSNP
rs971323442 744 dbSNP
rs147863453 756 dbSNP
rs1471475713 757 dbSNP
rs1045033884 782 dbSNP
rs1185176674 782 dbSNP
rs1012574113 784 dbSNP
rs894235145 789 dbSNP
rs780420545 791 dbSNP
rs1387853547 793 dbSNP
rs1048758306 796 dbSNP
rs1298440560 802 dbSNP
rs1398223805 807 dbSNP
rs947761332 811 dbSNP
rs1332627131 816 dbSNP
rs549642887 825 dbSNP
rs146132742 832 dbSNP
rs560890857 837 dbSNP
rs1247440446 839 dbSNP
rs1461856159 848 dbSNP
rs1037188456 849 dbSNP
rs940290102 851 dbSNP
rs184915682 854 dbSNP
rs1265034186 857 dbSNP
rs891370494 877 dbSNP
rs572005116 883 dbSNP
rs73931033 885 dbSNP
rs921368817 886 dbSNP
rs73931032 892 dbSNP
rs746837666 911 dbSNP
rs1448307437 914 dbSNP
rs567574314 914 dbSNP
rs777619450 916 dbSNP
rs924466087 919 dbSNP
rs933115476 922 dbSNP
rs1224138676 925 dbSNP
rs1375168832 931 dbSNP
rs577687069 933 dbSNP
rs1453970300 939 dbSNP
rs1339216626 940 dbSNP
rs1363679350 941 dbSNP
rs78901655 942 dbSNP
rs1296396492 944 dbSNP
rs1309467250 945 dbSNP
rs1231422280 953 dbSNP
rs1262244129 962 dbSNP
rs963398526 963 dbSNP
rs1016262431 964 dbSNP
rs1324062116 968 dbSNP
rs1205356320 975 dbSNP
rs1382946013 982 dbSNP
rs1024189995 987 dbSNP
rs1186581650 990 dbSNP
rs1263310422 992 dbSNP
rs983424875 994 dbSNP
rs1431067198 998 dbSNP
rs1197791505 1001 dbSNP
rs1429589649 1003 dbSNP
rs386809010 1005 dbSNP
rs748151999 1008 dbSNP
rs1470482524 1010 dbSNP
rs950830549 1016 dbSNP
rs1036148206 1030 dbSNP
rs1003075142 1036 dbSNP
rs1453743464 1045 dbSNP
rs1364219379 1053 dbSNP
rs958340237 1058 dbSNP
rs1282829745 1061 dbSNP
rs1346393769 1064 dbSNP
rs565706570 1067 dbSNP
rs906022387 1069 dbSNP
rs1023195465 1075 dbSNP
rs1027372153 1082 dbSNP
rs1316268465 1084 dbSNP
rs186980276 1088 dbSNP
rs1261952827 1090 dbSNP
rs1487193018 1091 dbSNP
rs754566053 1095 dbSNP
rs1221138300 1105 dbSNP
rs1269064265 1114 dbSNP
rs753386945 1122 dbSNP
rs1202020180 1124 dbSNP
rs1410296585 1132 dbSNP
rs1053403556 1137 dbSNP
rs1160531286 1139 dbSNP
rs934959582 1142 dbSNP
rs902268046 1143 dbSNP
rs1445746396 1161 dbSNP
rs1051944433 1165 dbSNP
rs142204162 1167 dbSNP
rs891375838 1171 dbSNP
rs1366414725 1174 dbSNP
rs1186735234 1178 dbSNP
rs921745205 1195 dbSNP
rs932653437 1196 dbSNP
rs563179220 1207 dbSNP
rs1309014500 1212 dbSNP
rs183223771 1213 dbSNP
rs756329126 1217 dbSNP
rs1221008296 1221 dbSNP
rs1291942019 1234 dbSNP
rs941941886 1240 dbSNP
rs192555061 1247 dbSNP
rs1202635263 1248 dbSNP
rs1318525858 1257 dbSNP
rs1231508624 1258 dbSNP
rs1480482625 1271 dbSNP
rs909107971 1274 dbSNP
rs1178171461 1280 dbSNP
rs552401399 1290 dbSNP
rs2945977 1295 dbSNP
rs111336897 1296 dbSNP
rs73032471 1296 dbSNP
rs577184840 1297 dbSNP
rs936112933 1301 dbSNP
rs1035816432 1304 dbSNP
rs1316612417 1309 dbSNP
rs764608011 1324 dbSNP
rs977663973 1326 dbSNP
rs949873588 1332 dbSNP
rs1376864554 1336 dbSNP
rs1245235891 1346 dbSNP
rs1363746457 1349 dbSNP
rs1289124804 1355 dbSNP
rs981913599 1357 dbSNP
rs374294692 1361 dbSNP
rs200067300 1362 dbSNP
rs10577491 1364 dbSNP
rs34281780 1364 dbSNP
rs765050089 1364 dbSNP
rs1348557901 1365 dbSNP
rs970279535 1369 dbSNP
rs1164509245 1370 dbSNP
rs1023101976 1371 dbSNP
rs1049944689 1377 dbSNP
rs1011676810 1396 dbSNP
rs1205647445 1400 dbSNP
rs958601824 1408 dbSNP
rs893391928 1417 dbSNP
rs1183569663 1420 dbSNP
rs1244319562 1422 dbSNP
rs1446482054 1423 dbSNP
rs1387642499 1433 dbSNP
rs1031851643 1437 dbSNP
rs1418996150 1439 dbSNP
rs999234459 1441 dbSNP
rs962109549 1457 dbSNP
rs1403691052 1461 dbSNP
rs1451800951 1467 dbSNP
rs1337257888 1469 dbSNP
rs763546904 1471 dbSNP
rs1384948298 1475 dbSNP
rs1432179423 1479 dbSNP
rs147609494 1482 dbSNP
rs1051547012 1490 dbSNP
rs765205521 1492 dbSNP
rs1448969183 1493 dbSNP
rs1262456253 1507 dbSNP
rs1188556577 1512 dbSNP
rs571292445 1526 dbSNP
rs1203463949 1531 dbSNP
rs933053502 1540 dbSNP
rs1264222963 1541 dbSNP
rs1463056653 1544 dbSNP
rs1191103070 1546 dbSNP
rs1241670306 1561 dbSNP
rs1475848664 1567 dbSNP
rs1188559552 1576 dbSNP
rs1427490955 1580 dbSNP
rs78643472 1583 dbSNP
rs1038905967 1584 dbSNP
rs997127161 1586 dbSNP
rs1408134844 1590 dbSNP
rs941807487 1590 dbSNP
rs1221445648 1598 dbSNP
rs1316979567 1600 dbSNP
rs1326553324 1608 dbSNP
rs909160489 1624 dbSNP
rs1272674304 1625 dbSNP
rs776675806 1629 dbSNP
rs1223216250 1631 dbSNP
rs73931031 1632 dbSNP
rs113627234 1633 dbSNP
rs928612793 1635 dbSNP
rs949935953 1636 dbSNP
rs1306440333 1638 dbSNP
rs1266958924 1648 dbSNP
rs1295651731 1656 dbSNP
rs111253880 1657 dbSNP
rs1431213663 1665 dbSNP
rs1055534158 1667 dbSNP
rs1157876512 1679 dbSNP
rs937297757 1697 dbSNP
rs79139857 1698 dbSNP
rs1300758515 1705 dbSNP
rs1364553926 1707 dbSNP
rs970564996 1713 dbSNP
rs532405668 1715 dbSNP
rs560114647 1716 dbSNP
rs1367800643 1727 dbSNP
rs990286276 1728 dbSNP
rs1306741240 1730 dbSNP
rs1279450250 1731 dbSNP
rs762549953 1732 dbSNP
rs1429647440 1737 dbSNP
rs1373757458 1744 dbSNP
rs1031925263 1745 dbSNP
rs545106294 1752 dbSNP
rs533073228 1766 dbSNP
rs1223564827 1776 dbSNP
rs1271346222 1777 dbSNP
rs369020092 1795 dbSNP
rs987265238 1796 dbSNP
rs1431719745 1800 dbSNP
rs574087733 1802 dbSNP
rs1364248571 1803 dbSNP
rs562437418 1804 dbSNP
rs1200325482 1811 dbSNP
rs568661335 1812 dbSNP
rs1270720821 1827 dbSNP
rs142742777 1829 dbSNP
rs1424882989 1834 dbSNP
rs779250873 1838 dbSNP
rs1030426437 1840 dbSNP
rs760402360 1861 dbSNP
rs538521656 1862 dbSNP
rs900257449 1868 dbSNP
rs1449702494 1869 dbSNP
rs1312981599 1885 dbSNP
rs1309858508 1888 dbSNP
rs1358754357 1901 dbSNP
rs576621992 1903 dbSNP
rs554264847 1904 dbSNP
rs1337707190 1909 dbSNP
rs150015814 1916 dbSNP
rs1194995953 1922 dbSNP
rs1038791786 1929 dbSNP
rs1251051850 1935 dbSNP
rs1006095223 1938 dbSNP
rs887589520 1948 dbSNP
rs1242483997 1951 dbSNP
rs1000217599 1952 dbSNP
rs1047666820 1953 dbSNP
rs903157082 1958 dbSNP
rs1370928869 1960 dbSNP
rs1042098598 1966 dbSNP
rs1347835679 1969 dbSNP
rs1286814941 1971 dbSNP
rs929226107 1977 dbSNP
rs183752489 1986 dbSNP
rs1467530851 1992 dbSNP
rs1391389802 2001 dbSNP
rs77528041 2003 dbSNP
rs1014365120 2008 dbSNP
rs572579320 2013 dbSNP
rs1046148406 2015 dbSNP
rs1315007185 2037 dbSNP
rs73931030 2043 dbSNP
rs1227015032 2048 dbSNP
rs1251654765 2051 dbSNP
rs1319682110 2052 dbSNP
rs151248681 2057 dbSNP
rs1055587099 2067 dbSNP
rs1481530750 2070 dbSNP
rs142297509 2079 dbSNP
rs920529505 2082 dbSNP
rs990191526 2088 dbSNP
rs1251156360 2094 dbSNP
rs374706665 2097 dbSNP
rs1374466452 2103 dbSNP
rs1467449002 2117 dbSNP
rs940589508 2126 dbSNP
rs1405974276 2132 dbSNP
rs148714765 2134 dbSNP
rs1304624923 2137 dbSNP
rs1382950850 2141 dbSNP
rs987538279 2147 dbSNP
rs1181466999 2151 dbSNP
rs954517061 2160 dbSNP
rs1381748952 2161 dbSNP
rs924770038 2163 dbSNP
rs556097212 2172 dbSNP
rs146619443 2177 dbSNP
rs1203949329 2180 dbSNP
rs771896677 2191 dbSNP
rs73931029 2201 dbSNP
rs748056004 2202 dbSNP
rs1238796748 2207 dbSNP
rs797022581 2215 dbSNP
rs76494135 2216 dbSNP
rs1014663559 2218 dbSNP
rs895907432 2222 dbSNP
rs1017388163 2223 dbSNP
rs1197704639 2230 dbSNP
rs549235441 2231 dbSNP
rs1178812468 2246 dbSNP
rs1362605386 2248 dbSNP
rs1337439953 2249 dbSNP
rs1453066774 2254 dbSNP
rs1471119254 2261 dbSNP
rs534300658 2265 dbSNP
rs899031233 2267 dbSNP
rs887496052 2270 dbSNP
rs1302270899 2284 dbSNP
rs1386740400 2316 dbSNP
rs527621678 2323 dbSNP
rs1158141318 2334 dbSNP
rs1304697823 2336 dbSNP
rs1316283270 2343 dbSNP
rs112673873 2349 dbSNP
rs1239118589 2349 dbSNP
rs1371055154 2349 dbSNP
rs564080285 2349 dbSNP
rs1488990765 2350 dbSNP
rs1193293320 2352 dbSNP
rs1452825925 2353 dbSNP
rs866219408 2354 dbSNP
rs1037478668 2356 dbSNP
rs1159921878 2363 dbSNP
rs1382291678 2365 dbSNP
rs1183962482 2368 dbSNP
rs11670917 2373 dbSNP
rs1242061087 2379 dbSNP
rs1183653736 2383 dbSNP
rs1462222041 2388 dbSNP
rs1163128643 2392 dbSNP
rs1026584567 2409 dbSNP
rs191691591 2412 dbSNP
rs1351879024 2430 dbSNP
rs533013001 2436 dbSNP
rs1243306887 2439 dbSNP
rs1051444697 2447 dbSNP
rs1391932669 2475 dbSNP
rs1045643995 2480 dbSNP
rs1244647837 2481 dbSNP
rs10416991 2484 dbSNP
rs1363067466 2487 dbSNP
rs1323162634 2488 dbSNP
rs1317930031 2490 dbSNP
rs544365387 2492 dbSNP
rs139716168 2493 dbSNP
rs1480574710 2504 dbSNP
rs1179871705 2505 dbSNP
rs1240604873 2511 dbSNP
rs112670632 2512 dbSNP
rs368565326 2519 dbSNP
rs543291468 2520 dbSNP
rs1407356322 2521 dbSNP
rs977997252 2533 dbSNP
rs1020922043 2536 dbSNP
rs755817735 2539 dbSNP
rs1333244661 2545 dbSNP
rs992861372 2550 dbSNP
rs1451208909 2552 dbSNP
rs572666153 2562 dbSNP
rs1380884923 2565 dbSNP
rs1192073303 2570 dbSNP
rs1212486405 2575 dbSNP
rs1227586164 2578 dbSNP
rs1271295495 2579 dbSNP
rs922883397 2582 dbSNP
rs975671087 2583 dbSNP
rs964401842 2594 dbSNP
rs750164303 2598 dbSNP
rs1208422687 2599 dbSNP
rs1460414913 2611 dbSNP
rs1203108357 2618 dbSNP
rs778249404 2622 dbSNP
rs984431869 2623 dbSNP
rs1184950509 2625 dbSNP
rs758878172 2629 dbSNP
rs111883382 2637 dbSNP
rs1172577357 2638 dbSNP
rs1248758982 2640 dbSNP
rs1034299630 2647 dbSNP
rs993772597 2656 dbSNP
rs545205651 2671 dbSNP
rs577856507 2683 dbSNP
rs1012773926 2684 dbSNP
rs894369363 2685 dbSNP
rs753092474 2686 dbSNP
rs935966706 2688 dbSNP
rs913880900 2692 dbSNP
rs989987260 2693 dbSNP
rs958146792 2699 dbSNP
rs903277225 2700 dbSNP
rs556234434 2701 dbSNP
rs1321992422 2707 dbSNP
rs926693139 2709 dbSNP
rs1203636241 2712 dbSNP
rs979946067 2716 dbSNP
rs934175125 2717 dbSNP
rs1213745313 2718 dbSNP
rs1241688692 2720 dbSNP
rs969828730 2731 dbSNP
rs1488775915 2732 dbSNP
rs1024643596 2734 dbSNP
rs922780399 2737 dbSNP
rs975548909 2738 dbSNP
rs942949806 2747 dbSNP
rs567289341 2748 dbSNP
rs932987647 2753 dbSNP
rs537981920 2754 dbSNP
rs1451408449 2759 dbSNP
rs1014146937 2760 dbSNP
rs183172471 2766 dbSNP
rs1300409162 2770 dbSNP
rs1343968196 2781 dbSNP
rs1374434730 2785 dbSNP
rs1026522582 2789 dbSNP
rs936446304 2792 dbSNP
rs925016619 2795 dbSNP
rs189699663 2801 dbSNP
rs971822343 2802 dbSNP
rs1347772750 2807 dbSNP
rs1222132492 2823 dbSNP
rs1283738920 2831 dbSNP
rs777849129 2833 dbSNP
rs978960825 2841 dbSNP
rs1267065333 2842 dbSNP
rs1460235165 2845 dbSNP
rs1199321497 2849 dbSNP
rs946182790 2862 dbSNP
rs185086352 2872 dbSNP
rs1157449406 2874 dbSNP
rs1482353944 2886 dbSNP
rs1272465338 2901 dbSNP
rs913496774 2905 dbSNP
rs1196461722 2912 dbSNP
rs1421006273 2912 dbSNP
rs971667359 2913 dbSNP
rs960261263 2915 dbSNP
rs1386510561 2921 dbSNP
rs1024155840 2922 dbSNP
rs1034350514 2924 dbSNP
rs980062259 2929 dbSNP
rs1012681928 2937 dbSNP
rs569172103 2938 dbSNP
rs1308598903 2942 dbSNP
rs1016719788 2946 dbSNP
rs958619941 2952 dbSNP
rs1289779789 2955 dbSNP
rs950579368 2956 dbSNP
rs1210208242 2957 dbSNP
rs1032858859 2958 dbSNP
rs1000190244 2964 dbSNP
rs903163621 2968 dbSNP
rs900419167 2970 dbSNP
rs1344677930 2973 dbSNP
rs1038753831 2975 dbSNP
rs766502901 2984 dbSNP
rs998292409 2986 dbSNP
rs1384210617 2990 dbSNP
rs1000499667 2991 dbSNP
rs1164171528 2998 dbSNP
rs1393400553 3014 dbSNP
rs1408597352 3024 dbSNP
rs1328016102 3026 dbSNP
rs1331217457 3028 dbSNP
rs1378302723 3032 dbSNP
rs1449016821 3033 dbSNP
rs903605320 3045 dbSNP
rs1397965984 3056 dbSNP
rs549095198 3065 dbSNP
rs1245863112 3069 dbSNP
rs901228024 3083 dbSNP
rs1039896904 3085 dbSNP
rs1286193559 3088 dbSNP
rs376398127 3089 dbSNP
rs760856284 3106 dbSNP
rs748593697 3112 dbSNP
rs1337153152 3113 dbSNP
rs1468949395 3124 dbSNP
rs1258564423 3132 dbSNP
rs1430505555 3132 dbSNP
rs773473020 3137 dbSNP
rs910169508 3146 dbSNP
rs867075220 3151 dbSNP
rs2587 3167 dbSNP
rs1201228786 3173 dbSNP
rs1042502806 3182 dbSNP
rs566774859 3183 dbSNP
rs771806707 3185 dbSNP
rs945133002 3186 dbSNP
rs551564437 3187 dbSNP
rs1189133983 3197 dbSNP
rs1202038821 3199 dbSNP
rs913412937 3214 dbSNP
rs1474594356 3217 dbSNP
rs1057296634 3219 dbSNP
rs1048675156 3224 dbSNP
rs1401654336 3225 dbSNP
rs1467678322 3226 dbSNP
rs539636376 3238 dbSNP
rs930329364 3243 dbSNP
rs569123063 3247 dbSNP
rs1401526130 3251 dbSNP
rs1468865817 3254 dbSNP
rs938970241 3258 dbSNP
rs918917741 3262 dbSNP
rs530327706 3263 dbSNP
rs1439665122 3270 dbSNP
rs548698877 3273 dbSNP
rs1217770538 3274 dbSNP
rs980072212 3275 dbSNP
rs1319877690 3284 dbSNP
rs1221666570 3286 dbSNP
rs1261301744 3287 dbSNP
rs1483267629 3296 dbSNP
rs1201678880 3300 dbSNP
rs963322349 3302 dbSNP
rs550631679 3309 dbSNP
rs57482908 3310 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B HITS-CLIP data was present in Chi_ControlA_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control A HITS-CLIP data was present in Chi_ControlB_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000523638.1 | 3UTR | AUUAGAGUGAAGAAAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000523638.1 | 3UTR | AUUAGAGUGAAGAAAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset Chi_ControlA_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control A
Location of target site ENST00000523638.1 | 3UTR | AUUAGAGUGAAGAAAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset Chi_ControlB_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control B
Location of target site ENST00000523638.1 | 3UTR | AUUAGAGUGAAGAAAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
Click to see details
138 hsa-miR-412-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT005780 ACVR1C activin A receptor type 1C 1 1
MIRT062013 YOD1 YOD1 deubiquitinase 2 2
MIRT345112 ATXN7L3 ataxin 7 like 3 2 2
MIRT383735 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 2
MIRT396956 CELF1 CUGBP Elav-like family member 1 2 2
MIRT439280 XIAP X-linked inhibitor of apoptosis 1 1
MIRT439313 VAT1 vesicle amine transport 1 1 1
MIRT439375 TUBA1A tubulin alpha 1a 1 1
MIRT439418 TMOD1 tropomodulin 1 1 1
MIRT439503 SURF4 surfeit 4 1 1
MIRT439563 SON SON DNA binding protein 1 1
MIRT439598 SLC3A2 solute carrier family 3 member 2 1 1
MIRT439670 SETD1B SET domain containing 1B 1 1
MIRT439767 RMND5A required for meiotic nuclear division 5 homolog A 1 1
MIRT439922 PPL periplakin 1 1
MIRT439947 PLEKHA6 pleckstrin homology domain containing A6 1 1
MIRT439952 PLCB4 phospholipase C beta 4 1 1
MIRT439961 PKD1 polycystin 1, transient receptor potential channel interacting 1 1
MIRT440005 PEG3 paternally expressed 3 1 1
MIRT440061 OSBPL8 oxysterol binding protein like 8 1 1
MIRT440166 MYH14 myosin heavy chain 14 1 1
MIRT440276 MAPK8IP1 mitogen-activated protein kinase 8 interacting protein 1 1 1
MIRT440437 IPO13 importin 13 1 1
MIRT440441 INTS3 integrator complex subunit 3 1 1
MIRT440448 INS insulin 1 1
MIRT440461 IGF2R insulin like growth factor 2 receptor 1 1
MIRT440472 IARS isoleucyl-tRNA synthetase 1 1
MIRT440530 GUCY1A3 guanylate cyclase 1 soluble subunit alpha 1 1
MIRT440542 GOLGA2 golgin A2 1 1
MIRT440569 GIGYF1 GRB10 interacting GYF protein 1 1 1
MIRT440608 FTSJD2 cap methyltransferase 1 1 1
MIRT440750 EEF1A2 eukaryotic translation elongation factor 1 alpha 2 1 1
MIRT440781 DOT1L DOT1 like histone lysine methyltransferase 1 1
MIRT440804 DNAJA4 DnaJ heat shock protein family (Hsp40) member A4 1 1
MIRT440867 CSDE1 cold shock domain containing E1 1 1
MIRT440890 CPEB4 cytoplasmic polyadenylation element binding protein 4 1 1
MIRT440917 COL1A1 collagen type I alpha 1 chain 1 1
MIRT440967 CDH22 cadherin 22 1 1
MIRT440968 CDH2 cadherin 2 1 1
MIRT441024 CALR calreticulin 1 1
MIRT441278 ACTB actin beta 1 1
MIRT448421 TNFAIP3 TNF alpha induced protein 3 2 2
MIRT462833 BCL3 B-cell CLL/lymphoma 3 2 2
MIRT465062 TSR1 TSR1, ribosome maturation factor 2 2
MIRT476050 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT485318 MZT1 mitotic spindle organizing protein 1 2 4
MIRT493584 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 6
MIRT494567 BAK1 BCL2 antagonist/killer 1 2 2
MIRT497393 RALY RALY heterogeneous nuclear ribonucleoprotein 2 2
MIRT503250 ZNF257 zinc finger protein 257 2 10
MIRT503656 ZNF138 zinc finger protein 138 2 10
MIRT505882 RNF219 ring finger protein 219 2 2
MIRT507525 DSTN destrin, actin depolymerizing factor 2 4
MIRT510663 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT514682 ZNF701 zinc finger protein 701 2 4
MIRT515370 ZNF208 zinc finger protein 208 2 6
MIRT525237 KCNJ12 potassium voltage-gated channel subfamily J member 12 2 2
MIRT527963 MTAP methylthioadenosine phosphorylase 2 2
MIRT528482 STAMBPL1 STAM binding protein like 1 2 2
MIRT529909 C1orf64 steroid receptor associated and regulated protein 2 4
MIRT531558 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT532234 KLF2 Kruppel like factor 2 2 4
MIRT532480 HOXA13 homeobox A13 2 2
MIRT535544 P2RY2 purinergic receptor P2Y2 2 2
MIRT547311 NR1D2 nuclear receptor subfamily 1 group D member 2 2 2
MIRT551795 ZNF117 zinc finger protein 117 2 4
MIRT554939 RAP1A RAP1A, member of RAS oncogene family 2 2
MIRT558171 EIF5A2 eukaryotic translation initiation factor 5A2 2 2
MIRT568771 LY6K lymphocyte antigen 6 family member K 2 2
MIRT570766 ZNF99 zinc finger protein 99 2 2
MIRT572405 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT573396 DLC1 DLC1 Rho GTPase activating protein 2 2
MIRT610403 RXRB retinoid X receptor beta 2 2
MIRT610886 SCN8A sodium voltage-gated channel alpha subunit 8 2 2
MIRT611197 TMEM105 transmembrane protein 105 2 2
MIRT611244 ZNF550 zinc finger protein 550 2 2
MIRT615669 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 4
MIRT617974 DOCK4 dedicator of cytokinesis 4 2 2
MIRT619150 ZNF326 zinc finger protein 326 2 2
MIRT619608 MKKS McKusick-Kaufman syndrome 2 2
MIRT621053 DGKD diacylglycerol kinase delta 2 2
MIRT623665 HRK harakiri, BCL2 interacting protein 2 2
MIRT624883 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT624939 MARCH2 membrane associated ring-CH-type finger 2 2 2
MIRT634198 TMOD2 tropomodulin 2 2 4
MIRT636727 AGO2 argonaute 2, RISC catalytic component 2 2
MIRT637741 POLR3K RNA polymerase III subunit K 2 2
MIRT638002 ZC3H13 zinc finger CCCH-type containing 13 2 2
MIRT640395 ZNF785 zinc finger protein 785 2 2
MIRT640505 ANTXR1 anthrax toxin receptor 1 2 2
MIRT641293 SLAMF1 signaling lymphocytic activation molecule family member 1 2 2
MIRT641863 STOML1 stomatin like 1 2 2
MIRT642600 C14orf180 chromosome 14 open reading frame 180 2 2
MIRT642895 CASP1 caspase 1 2 2
MIRT643967 FHL2 four and a half LIM domains 2 2 4
MIRT645237 KCTD12 potassium channel tetramerization domain containing 12 2 2
MIRT646621 CENPL centromere protein L 2 2
MIRT648620 CYB561A3 cytochrome b561 family member A3 2 2
MIRT648908 ZNF551 zinc finger protein 551 2 2
MIRT649439 HIBADH 3-hydroxyisobutyrate dehydrogenase 2 2
MIRT650637 LTF lactotransferrin 2 2
MIRT650971 STARD3NL STARD3 N-terminal like 2 2
MIRT651067 ZNF518B zinc finger protein 518B 2 4
MIRT652384 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT653958 SEPN1 selenoprotein N 2 2
MIRT656885 KIF1C kinesin family member 1C 2 2
MIRT657965 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT658080 FOXR2 forkhead box R2 2 2
MIRT662570 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT663089 METTL10 EEF1A lysine methyltransferase 2 2 2
MIRT683705 ZNF195 zinc finger protein 195 2 2
MIRT683835 ZNF682 zinc finger protein 682 2 2
MIRT706811 APOL4 apolipoprotein L4 2 2
MIRT707575 DYNC2LI1 dynein cytoplasmic 2 light intermediate chain 1 2 2
MIRT708606 ZNF260 zinc finger protein 260 2 2
MIRT708859 TMSB4X thymosin beta 4, X-linked 2 2
MIRT709861 PDIK1L PDLIM1 interacting kinase 1 like 2 2
MIRT709987 RBM41 RNA binding motif protein 41 2 2
MIRT710098 KPNA5 karyopherin subunit alpha 5 2 2
MIRT710211 ENAH ENAH, actin regulator 2 2
MIRT710868 B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 2 2
MIRT710986 SUSD5 sushi domain containing 5 2 2
MIRT711460 RNF145 ring finger protein 145 2 2
MIRT712302 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT713609 SYTL4 synaptotagmin like 4 2 2
MIRT713789 MAK16 MAK16 homolog 2 2
MIRT715480 MYO9B myosin IXB 2 2
MIRT716328 POU5F1 POU class 5 homeobox 1 2 2
MIRT717252 TMEM246 transmembrane protein 246 2 2
MIRT718077 CLIC5 chloride intracellular channel 5 2 2
MIRT718463 EED embryonic ectoderm development 2 2
MIRT718645 NKPD1 NTPase KAP family P-loop domain containing 1 2 2
MIRT718982 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT721078 RPS9 ribosomal protein S9 2 2
MIRT721419 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT721863 CENPJ centromere protein J 2 2
MIRT722492 PNKD paroxysmal nonkinesigenic dyskinesia 2 2
MIRT723391 CALN1 calneuron 1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-412 Gemcitabine approved 60750 Northern blot Mz-ChA-1 human cholangiocarcinoma cell lines 16762633 2006 down-regulated
miR-412 Progesterone approved 5994 Microarray Breast cancer 22330642 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-412 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-412 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-412-3p Verapamil 2520 NSC272366 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-412-3p Doxorubicin 31703 NSC123127 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780)
hsa-miR-412-3p Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (RKO)
hsa-miR-412-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (HCT-116)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780)
hsa-miR-412-3p Doxorubicin 31703 NSC123127 approved sensitive High Anaplastic Thyroid Cancer tissue
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM36)
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM47)
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM43)
hsa-miR-412-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-412-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-412-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (Panc1-GR1)
hsa-miR-412-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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