pre-miRNA Information
pre-miRNA hsa-mir-500b   
Genomic Coordinates chrX: 50010672 - 50010750
Description Homo sapiens miR-500b stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-500b-3p
Sequence 51| GCACCCAGGCAAGGAUUCUG |70
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs782140253 8 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol C3orf18   
Synonyms G20
Description chromosome 3 open reading frame 18
Transcript NM_001171740   
Other Transcripts NM_001171741 , NM_001171743 , NM_016210   
Expression
Putative miRNA Targets on C3orf18
3'UTR of C3orf18
(miRNA target sites are highlighted)
>C3orf18|NM_001171740|3'UTR
   1 GTGGCCTGGGACAAGCCTGGACTTCTGATAGAGACCCATCACGGTGCCTACAGAGCTCCCCACTCCCTGATTGTCAAGAC
  81 CTACTCTGAAGATCTTCCCTGCCAAGACACAAGAGGGCTGAGCCAGGTCCTAGCTGTTCTCCAGACCCACCTGCTGACTT
 161 TAGACTCTAAGAGAGGGCCCTAGCCAGGCTGGACTTCTGACCACTGACTTCTCCTGACCTGAGGGCCCTGGCACAGAGGG
 241 CATCCCTCATGCTGAGAAGGTCAAGAGCCTCTGCTGGCTTCCTCATCCCCTGTCCAGATCCCTCACATCAGGGTCTGCCC
 321 CGCTAATGTGGAGGAAATGAGGGAGATACGGAGTGGGAGGGATTGGGGGAGGAAAGGGGAGGTTTCCCTCTGTTAGGGAG
 401 AGACCTGTTTTTTGGAATCTGGAGCCTCCTCTGGGGTGGGGAGAGGAAACCACCCAAGTTATAGGGACAGGGTAGGGCAG
 481 CATCTGTTATGGGCCCTGAGAAGCCCAGAGATGGAGCTGAAACTGTCCAGTATGCAAGGATGCCAGGAGAAGGGCAATTC
 561 ACACCCAGGGTCCATCCATACTACGGAGGGTCCAGGAGGTCTCCCAGCCACCCATCCTTGGCAACCAGATGTTACTGGGG
 641 CCAAGCTAGGATGGGAGCTGAGGGGGAAGGAAGTAGGGGAATGGAAGTGGAAGGATGCAGCCCCCCCAGACCTGCCGAGA
 721 GGCCTCATGCATGTGCATGAGTGTGCCCATGGGCAGACATGTGCCTGTCCCAGCACAGCGGGCAGAATGAGATTGTCCAC
 801 ACTGGCCCCACCCTCCAAGTCGACCTCTACCCCATGGTATGTAGTGGAGCATCAGGGTAGGCTATCTTCTCTGCCTTCAA
 881 TCTTCAGGGACTGCAGGGAAGAGGGAAGCACGCACAGCACGGTTCCTCTCTCCACTGCATTGTTTCACTGGGCTCACCTG
 961 CTTCTGAAAACGGCTCCCTGTCTTGGGCTCTAATGAGGATCTGGGGTTGGGAGAGGCTGTTGGTCTGAGGGCAGTAATCA
1041 CAGGCTGCAGGCTAGAGGGGGCAGTTATGACTGCCTGAAAGTGGGTGAGGGATTGCACTTCAGAAAAACATCTAAAAAAC
1121 TTAGTCTATGTTTGAATTCCCCACCTCCATCCCATCTATGGGAAGAGCCGTTCAGTGTTTAGAGAGTGGGGAGATGGGTC
1201 CCTGCACTTGGCCTCTCCATAAGCCTTGGAGGGTCAGGGCTGATACCAGGGGTCCTGGCAAGCCATTGGGCAGAGACAGA
1281 CCACAAGAGCAGGGCATTTTTTTACGCTGGGCATACATATGCACACAAGCATGCACAGAGGCATGTCCCGTGCCCAGCCT
1361 CTCCACCGTCACTGTCCGCTGCTGGCTGGAGGGGATGCAGGGGTAGTGTATGCAGACCTTCCACTGGGCAAATGCCATGT
1441 GTCAGGAGGGAAAGGCCTAGGAAGCCCCCATGGGGAAGGTTCTGGATTTATTCCCTCCTCTAAATGCTATAAATACGTTA
1521 GCACTTGAGTCGACTGGAGGCTGCCAGGAATTCAGGATGCATACAGCTGTAATTTAACCCAGAGCAGCTCCACGTGAGAG
1601 CATTAAAGATGTAATGAAGATGTTTACATGGAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' guCUUAGGAACGGA-CCCACg 5'
            |:| |||  :|| ||||| 
Target 5' ctGGAGCCTCCTCTGGGGTGg 3'
419 - 439 126.00 -14.90
2
miRNA  3' gucuuaggaacggACCCACg 5'
                       |||||| 
Target 5' gactgcctgaaagTGGGTGa 3'
1069 - 1088 120.00 -13.30
3
miRNA  3' gucUUAGGAACG-GACCCacg 5'
             |: |||| | |||||   
Target 5' tgcAGACCTTCCACTGGGcaa 3'
1411 - 1431 117.00 -16.02
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN23146035 4 COSMIC
COSN30158933 27 COSMIC
COSN31576111 48 COSMIC
COSN19750847 76 COSMIC
COSN26566679 80 COSMIC
COSN5003351 134 COSMIC
COSN31604689 167 COSMIC
COSN1951961 248 COSMIC
COSN20074810 379 COSMIC
COSN5045197 433 COSMIC
COSN20056470 455 COSMIC
COSN32069228 475 COSMIC
COSN31484022 571 COSMIC
COSN26562426 581 COSMIC
COSN31545475 584 COSMIC
COSN30598555 585 COSMIC
COSN24296959 701 COSMIC
COSN30166355 716 COSMIC
COSN229041 717 COSMIC
COSN19706226 753 COSMIC
COSN26438838 776 COSMIC
COSN15631404 853 COSMIC
COSN31519285 882 COSMIC
COSN20119143 888 COSMIC
COSN31584594 926 COSMIC
COSN31552635 952 COSMIC
COSN21128081 1028 COSMIC
COSN9553276 1064 COSMIC
COSN28838790 1114 COSMIC
COSN31528942 1115 COSMIC
COSN28086372 1138 COSMIC
COSN5537031 1305 COSMIC
COSN8925843 1378 COSMIC
COSN31550483 1478 COSMIC
COSN7762868 1593 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs771323831 3 dbSNP
rs749616805 4 dbSNP
rs778316984 5 dbSNP
rs1009895657 6 dbSNP
rs1307985035 9 dbSNP
rs1430995183 10 dbSNP
rs1392545700 15 dbSNP
rs1169204259 26 dbSNP
rs1471522202 27 dbSNP
rs770137278 31 dbSNP
rs748705370 34 dbSNP
rs1476079952 37 dbSNP
rs1249304214 40 dbSNP
rs781611107 42 dbSNP
rs757922902 43 dbSNP
rs369709366 46 dbSNP
rs1276671272 51 dbSNP
rs1336302958 53 dbSNP
rs936269472 60 dbSNP
rs1252056865 61 dbSNP
rs927529328 72 dbSNP
rs993207092 75 dbSNP
rs1430713743 88 dbSNP
rs35055806 100 dbSNP
rs1330549424 102 dbSNP
rs1466501276 102 dbSNP
rs897353732 105 dbSNP
rs1044593697 111 dbSNP
rs1411419313 112 dbSNP
rs950191401 115 dbSNP
rs1310147929 120 dbSNP
rs775534357 128 dbSNP
rs750387533 132 dbSNP
rs910143838 136 dbSNP
rs1234638847 141 dbSNP
rs370596392 145 dbSNP
rs1044612215 150 dbSNP
rs1343370223 155 dbSNP
rs948737527 157 dbSNP
rs972797485 158 dbSNP
rs1274993168 161 dbSNP
rs1411138219 166 dbSNP
rs940068063 169 dbSNP
rs1202521236 170 dbSNP
rs527353900 170 dbSNP
rs909885568 172 dbSNP
rs768358230 177 dbSNP
rs1433223172 178 dbSNP
rs1291046792 183 dbSNP
rs984112891 185 dbSNP
rs1161874132 205 dbSNP
rs1375840559 207 dbSNP
rs992950401 213 dbSNP
rs765082857 221 dbSNP
rs1168992662 224 dbSNP
rs956088548 229 dbSNP
rs952056836 230 dbSNP
rs1429367486 231 dbSNP
rs560093893 235 dbSNP
rs1306364623 241 dbSNP
rs544647750 243 dbSNP
rs1381508678 252 dbSNP
rs1178493834 254 dbSNP
rs1028830696 256 dbSNP
rs1301252926 259 dbSNP
rs974580846 262 dbSNP
rs118103718 264 dbSNP
rs562478792 272 dbSNP
rs968555791 273 dbSNP
rs1017949483 274 dbSNP
rs1266815789 276 dbSNP
rs779665377 285 dbSNP
rs1451302310 295 dbSNP
rs1007471970 296 dbSNP
rs1287932225 302 dbSNP
rs1208719915 304 dbSNP
rs1225290658 306 dbSNP
rs954418736 311 dbSNP
rs1351048227 320 dbSNP
rs375829969 321 dbSNP
rs1018673810 322 dbSNP
rs1447400661 327 dbSNP
rs1379943059 333 dbSNP
rs1168662928 339 dbSNP
rs1370402241 345 dbSNP
rs753609708 349 dbSNP
rs1357958915 350 dbSNP
rs891521122 353 dbSNP
rs1388599139 354 dbSNP
rs1033094459 357 dbSNP
rs897593523 362 dbSNP
rs529051315 365 dbSNP
rs1226626384 367 dbSNP
rs906143112 395 dbSNP
rs1314505796 397 dbSNP
rs1321950848 399 dbSNP
rs1044667485 402 dbSNP
rs1015943935 404 dbSNP
rs1326040880 407 dbSNP
rs1209321804 408 dbSNP
rs763777120 410 dbSNP
rs1247317735 417 dbSNP
rs1463422271 426 dbSNP
rs1435093512 429 dbSNP
rs1256514749 434 dbSNP
rs1347776506 436 dbSNP
rs186689643 438 dbSNP
rs1164287210 439 dbSNP
rs1415815541 442 dbSNP
rs1402812214 445 dbSNP
rs760355126 456 dbSNP
rs1411476027 462 dbSNP
rs888587316 464 dbSNP
rs1208206576 465 dbSNP
rs1355648405 466 dbSNP
rs1420089280 471 dbSNP
rs774959182 472 dbSNP
rs1247201445 473 dbSNP
rs1388534005 474 dbSNP
rs749977384 478 dbSNP
rs948995478 486 dbSNP
rs540730985 489 dbSNP
rs1410814894 490 dbSNP
rs1373021334 493 dbSNP
rs1304971779 497 dbSNP
rs1475110842 506 dbSNP
rs1380280953 507 dbSNP
rs1395118683 513 dbSNP
rs1322077721 517 dbSNP
rs778515551 524 dbSNP
rs1228456658 528 dbSNP
rs1267499745 529 dbSNP
rs1389330109 530 dbSNP
rs1163518808 536 dbSNP
rs1462723441 538 dbSNP
rs1212080816 545 dbSNP
rs1256392066 549 dbSNP
rs1409279019 552 dbSNP
rs1037176267 554 dbSNP
rs1482782734 565 dbSNP
rs756925996 569 dbSNP
rs1234535104 571 dbSNP
rs1196585619 573 dbSNP
rs1255647301 574 dbSNP
rs1473648995 575 dbSNP
rs753562440 577 dbSNP
rs1290631637 581 dbSNP
rs115377609 584 dbSNP
rs1411254985 585 dbSNP
rs558147536 585 dbSNP
rs934617318 588 dbSNP
rs539875167 589 dbSNP
rs1229403049 590 dbSNP
rs1352657708 592 dbSNP
rs1273606150 595 dbSNP
rs565467633 610 dbSNP
rs1332153286 613 dbSNP
rs73835537 621 dbSNP
rs1462543780 625 dbSNP
rs1409983202 627 dbSNP
rs1274299382 629 dbSNP
rs1386082310 632 dbSNP
rs1195787833 637 dbSNP
rs1157869054 638 dbSNP
rs1457584081 641 dbSNP
rs77244970 645 dbSNP
rs1301858758 647 dbSNP
rs1170777606 650 dbSNP
rs1311443294 653 dbSNP
rs895070324 656 dbSNP
rs182336876 659 dbSNP
rs374101131 662 dbSNP
rs1195651460 663 dbSNP
rs1463548971 664 dbSNP
rs1030176957 665 dbSNP
rs1032755086 676 dbSNP
rs745484749 682 dbSNP
rs1209545510 684 dbSNP
rs1319142559 688 dbSNP
rs905509828 692 dbSNP
rs1426466492 700 dbSNP
rs1218980979 701 dbSNP
rs773396261 702 dbSNP
rs1277113938 703 dbSNP
rs1442466680 705 dbSNP
rs770184669 707 dbSNP
rs1275428648 708 dbSNP
rs1437964716 708 dbSNP
rs1319496975 710 dbSNP
rs1435312968 711 dbSNP
rs1005961286 716 dbSNP
rs150241640 717 dbSNP
rs1413696541 722 dbSNP
rs1023114781 728 dbSNP
rs1229459343 729 dbSNP
rs1334744180 732 dbSNP
rs1425793537 733 dbSNP
rs1436209345 734 dbSNP
rs1223858510 736 dbSNP
rs1175375663 737 dbSNP
rs546830516 748 dbSNP
rs1488447265 749 dbSNP
rs781702927 749 dbSNP
rs533906946 750 dbSNP
rs1189267404 753 dbSNP
rs1057374070 754 dbSNP
rs1487002864 755 dbSNP
rs745334292 757 dbSNP
rs1408215385 758 dbSNP
rs759782568 761 dbSNP
rs1037202566 764 dbSNP
rs1209936251 772 dbSNP
rs868673282 773 dbSNP
rs903178707 775 dbSNP
rs1283102476 776 dbSNP
rs1043575347 779 dbSNP
rs940168656 780 dbSNP
rs1322420588 781 dbSNP
rs947478132 783 dbSNP
rs1214632560 787 dbSNP
rs771548771 789 dbSNP
rs910408547 790 dbSNP
rs1189746680 792 dbSNP
rs1300647451 795 dbSNP
rs778427597 796 dbSNP
rs1323990601 797 dbSNP
rs749716657 803 dbSNP
rs1471354012 807 dbSNP
rs1359478293 809 dbSNP
rs888560005 812 dbSNP
rs1427791391 816 dbSNP
rs1369854990 817 dbSNP
rs140239095 821 dbSNP
rs932666152 822 dbSNP
rs748926549 827 dbSNP
rs1181440098 830 dbSNP
rs921250582 830 dbSNP
rs1473342228 832 dbSNP
rs923195104 834 dbSNP
rs190105437 837 dbSNP
rs186486187 840 dbSNP
rs1483043239 842 dbSNP
rs755905104 844 dbSNP
rs1203708131 845 dbSNP
rs1204613718 846 dbSNP
rs1308689497 850 dbSNP
rs35333669 853 dbSNP
rs1412493563 855 dbSNP
rs142088026 856 dbSNP
rs1276038892 858 dbSNP
rs1227347763 861 dbSNP
rs771162303 865 dbSNP
rs1389280125 866 dbSNP
rs767436098 869 dbSNP
rs757057835 870 dbSNP
rs1225170799 874 dbSNP
rs1373778086 877 dbSNP
rs748423662 880 dbSNP
rs1294951439 882 dbSNP
rs1278667890 890 dbSNP
rs1407747380 897 dbSNP
rs1349871273 902 dbSNP
rs867596323 911 dbSNP
rs529136772 912 dbSNP
rs1348154108 917 dbSNP
rs1164389591 918 dbSNP
rs754993698 920 dbSNP
rs1023773866 921 dbSNP
rs1180555802 922 dbSNP
rs751626772 924 dbSNP
rs1470332716 925 dbSNP
rs955896553 927 dbSNP
rs766584243 932 dbSNP
rs1253182309 934 dbSNP
rs1179410730 936 dbSNP
rs1481345162 937 dbSNP
rs763185341 938 dbSNP
rs1473977308 939 dbSNP
rs140304595 948 dbSNP
rs960153884 952 dbSNP
rs1456659849 965 dbSNP
rs969769017 967 dbSNP
rs540024936 971 dbSNP
rs572978469 972 dbSNP
rs1307648272 979 dbSNP
rs1013886678 982 dbSNP
rs903208696 999 dbSNP
rs762217106 1001 dbSNP
rs1413095956 1019 dbSNP
rs1293066489 1023 dbSNP
rs1290309929 1025 dbSNP
rs1441715521 1041 dbSNP
rs781212356 1044 dbSNP
rs1278270704 1047 dbSNP
rs1256669032 1048 dbSNP
rs1011963778 1061 dbSNP
rs564451357 1067 dbSNP
rs1484493638 1068 dbSNP
rs1206793388 1069 dbSNP
rs1251944138 1073 dbSNP
rs1482257981 1079 dbSNP
rs1234487553 1080 dbSNP
rs1446024761 1087 dbSNP
rs1379286046 1097 dbSNP
rs1478272586 1107 dbSNP
rs1015837483 1113 dbSNP
rs1392979726 1117 dbSNP
rs1433121165 1123 dbSNP
rs1310050930 1124 dbSNP
rs546315233 1125 dbSNP
rs1198764462 1129 dbSNP
rs1004825600 1131 dbSNP
rs1255775256 1138 dbSNP
rs888603521 1144 dbSNP
rs1303155970 1150 dbSNP
rs1321949505 1152 dbSNP
rs387787 1156 dbSNP
rs417962 1162 dbSNP
rs564594513 1168 dbSNP
rs575748578 1169 dbSNP
rs534005305 1170 dbSNP
rs536156167 1182 dbSNP
rs908899496 1183 dbSNP
rs755153713 1186 dbSNP
rs183608186 1197 dbSNP
rs969433642 1198 dbSNP
rs916333582 1199 dbSNP
rs387834 1202 dbSNP
rs1041032692 1204 dbSNP
rs991873220 1210 dbSNP
rs1391010514 1225 dbSNP
rs960236022 1233 dbSNP
rs944033897 1237 dbSNP
rs1392906778 1238 dbSNP
rs553543843 1251 dbSNP
rs1035843758 1254 dbSNP
rs534943019 1259 dbSNP
rs1369238395 1266 dbSNP
rs1163837677 1277 dbSNP
rs1421792288 1282 dbSNP
rs911850121 1283 dbSNP
rs1437708845 1287 dbSNP
rs1297965658 1288 dbSNP
rs1306567202 1290 dbSNP
rs1410077713 1291 dbSNP
rs778873230 1297 dbSNP
rs1179115908 1304 dbSNP
rs999138987 1305 dbSNP
rs763878895 1306 dbSNP
rs925824320 1311 dbSNP
rs1235901126 1313 dbSNP
rs757156801 1318 dbSNP
rs967670841 1325 dbSNP
rs978981590 1332 dbSNP
rs969795258 1335 dbSNP
rs1410240655 1339 dbSNP
rs1214987606 1344 dbSNP
rs571006140 1349 dbSNP
rs1022271201 1350 dbSNP
rs1011580429 1359 dbSNP
rs755152111 1367 dbSNP
rs1244550616 1368 dbSNP
rs551110743 1377 dbSNP
rs1361642059 1378 dbSNP
rs959690735 1384 dbSNP
rs889082887 1388 dbSNP
rs1050505910 1401 dbSNP
rs997553814 1402 dbSNP
rs1016283113 1406 dbSNP
rs901706171 1407 dbSNP
rs539138425 1414 dbSNP
rs423763 1415 dbSNP
rs940489878 1421 dbSNP
rs1209223083 1428 dbSNP
rs1259956638 1430 dbSNP
rs377069452 1453 dbSNP
rs35560007 1455 dbSNP
rs1241575501 1460 dbSNP
rs1185048099 1464 dbSNP
rs34927121 1476 dbSNP
rs1258515118 1487 dbSNP
rs1475615039 1489 dbSNP
rs766460958 1494 dbSNP
rs1415696515 1502 dbSNP
rs1307225660 1509 dbSNP
rs996936643 1517 dbSNP
rs1345016536 1520 dbSNP
rs947753503 1531 dbSNP
rs1391763537 1532 dbSNP
rs1413721216 1540 dbSNP
rs1290925764 1556 dbSNP
rs1351754642 1559 dbSNP
rs1228974360 1560 dbSNP
rs550114951 1561 dbSNP
rs1314970011 1562 dbSNP
rs760707581 1564 dbSNP
rs1256304325 1569 dbSNP
rs372507823 1574 dbSNP
rs1210382104 1578 dbSNP
rs1008208223 1584 dbSNP
rs1255535142 1587 dbSNP
rs892454757 1592 dbSNP
rs529209897 1593 dbSNP
rs934616118 1594 dbSNP
rs977605340 1598 dbSNP
rs904401743 1603 dbSNP
rs28496515 1608 dbSNP
rs147552815 1612 dbSNP
rs528321637 1615 dbSNP
rs1310663736 1616 dbSNP
rs767068896 1619 dbSNP
rs992557663 1622 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_ControlA_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control A HITS-CLIP data was present in Chi_ControlB_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_ControlA_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control A
Location of target site ENST00000426034.1 | 3UTR | UGAGGGAUUGCACUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset Chi_ControlB_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control B
Location of target site ENST00000426034.1 | 3UTR | UGAGGGAUUGCACUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
172 hsa-miR-500b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059905 HDGF heparin binding growth factor 2 4
MIRT235394 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 4
MIRT442246 PYGO1 pygopus family PHD finger 1 2 2
MIRT443591 ZNF439 zinc finger protein 439 2 4
MIRT453280 EFTUD2 elongation factor Tu GTP binding domain containing 2 2 2
MIRT463540 ZBTB7A zinc finger and BTB domain containing 7A 2 2
MIRT465589 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT469462 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT485449 KCTD15 potassium channel tetramerization domain containing 15 2 4
MIRT486682 WDR81 WD repeat domain 81 2 2
MIRT489078 POLM DNA polymerase mu 2 2
MIRT493734 GREM2 gremlin 2, DAN family BMP antagonist 2 2
MIRT494872 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT496130 RNF103-CHMP3 RNF103-CHMP3 readthrough 2 2
MIRT496489 CHMP3 charged multivesicular body protein 3 2 2
MIRT496924 CLMN calmin 2 2
MIRT497297 TMEM119 transmembrane protein 119 2 2
MIRT499103 AGRN agrin 2 2
MIRT508979 CXorf38 chromosome X open reading frame 38 2 2
MIRT509911 NIPAL1 NIPA like domain containing 1 2 2
MIRT512820 ARRDC2 arrestin domain containing 2 2 4
MIRT512827 KBTBD6 kelch repeat and BTB domain containing 6 2 4
MIRT515360 MRPL52 mitochondrial ribosomal protein L52 2 2
MIRT516610 TRIM58 tripartite motif containing 58 2 2
MIRT517053 TLDC1 TBC/LysM-associated domain containing 1 2 2
MIRT517637 ZNF491 zinc finger protein 491 2 2
MIRT518270 LEAP2 liver enriched antimicrobial peptide 2 2 2
MIRT518625 STAR steroidogenic acute regulatory protein 2 2
MIRT518887 N4BP2L2 NEDD4 binding protein 2 like 2 2 2
MIRT519026 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT520365 UBE2G2 ubiquitin conjugating enzyme E2 G2 2 2
MIRT521106 SLC1A5 solute carrier family 1 member 5 2 2
MIRT521943 PHC3 polyhomeotic homolog 3 2 2
MIRT522253 NPEPPS aminopeptidase puromycin sensitive 2 2
MIRT522853 KIAA1551 KIAA1551 2 2
MIRT522868 KIAA1549 KIAA1549 2 2
MIRT524207 DDX19B DEAD-box helicase 19B 2 2
MIRT526004 ARHGAP27 Rho GTPase activating protein 27 2 2
MIRT527769 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT527827 TMEM74B transmembrane protein 74B 2 2
MIRT527861 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT528040 WT1 Wilms tumor 1 2 2
MIRT529802 ZDHHC8 zinc finger DHHC-type containing 8 2 2
MIRT531723 TARS threonyl-tRNA synthetase 2 2
MIRT531996 BARD1 BRCA1 associated RING domain 1 2 2
MIRT533338 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT533621 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT533652 TMOD2 tropomodulin 2 2 2
MIRT534397 SENP3 SUMO1/sentrin/SMT3 specific peptidase 3 2 2
MIRT538686 CCDC80 coiled-coil domain containing 80 2 2
MIRT540444 RBM43 RNA binding motif protein 43 2 2
MIRT542586 ZC3H12C zinc finger CCCH-type containing 12C 2 8
MIRT542796 PLEKHA3 pleckstrin homology domain containing A3 2 4
MIRT542991 ERC1 ELKS/RAB6-interacting/CAST family member 1 2 2
MIRT544424 ZNF460 zinc finger protein 460 2 4
MIRT545740 ESF1 ESF1 nucleolar pre-rRNA processing protein homolog 2 4
MIRT552618 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT554456 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT569663 PRIM1 DNA primase subunit 1 2 2
MIRT569924 PCSK9 proprotein convertase subtilisin/kexin type 9 2 2
MIRT570140 IL1RL2 interleukin 1 receptor like 2 2 2
MIRT573558 TMEM120B transmembrane protein 120B 2 2
MIRT574282 OPRD1 opioid receptor delta 1 2 2
MIRT575335 Fbxo6 F-box protein 6 2 2
MIRT607057 IDS iduronate 2-sulfatase 2 2
MIRT607078 POM121L7 POM121 transmembrane nucleoporin like 7 pseudogene 2 2
MIRT607500 HEBP2 heme binding protein 2 2 2
MIRT607530 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT607808 RHBDL2 rhomboid like 2 2 2
MIRT608079 ZFP14 ZFP14 zinc finger protein 2 2
MIRT609119 NUDT3 nudix hydrolase 3 2 2
MIRT609745 PTCH1 patched 1 2 2
MIRT612904 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 2
MIRT618720 PCSK2 proprotein convertase subtilisin/kexin type 2 2 2
MIRT618778 HLA-E major histocompatibility complex, class I, E 2 2
MIRT619015 SLC2A6 solute carrier family 2 member 6 2 2
MIRT623223 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT623819 GEMIN6 gem nuclear organelle associated protein 6 2 2
MIRT625704 OPTN optineurin 2 2
MIRT626437 CHDH choline dehydrogenase 2 2
MIRT628087 KAT7 lysine acetyltransferase 7 2 2
MIRT628936 APOB apolipoprotein B 2 2
MIRT633543 PGBD5 piggyBac transposable element derived 5 2 2
MIRT634348 SGOL1 shugoshin 1 2 2
MIRT634611 KIAA1919 major facilitator superfamily domain containing 4B 2 2
MIRT635243 QPRT quinolinate phosphoribosyltransferase 2 2
MIRT636681 BTLA B and T lymphocyte associated 2 2
MIRT636923 ZNF845 zinc finger protein 845 2 2
MIRT637606 ZNF554 zinc finger protein 554 2 2
MIRT639242 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT640835 POLR3A RNA polymerase III subunit A 2 2
MIRT642098 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT643087 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT643934 C17orf104 meiosis specific with coiled-coil domain 2 2
MIRT644353 FXN frataxin 2 2
MIRT645628 SF3A3 splicing factor 3a subunit 3 2 2
MIRT645754 FAM213A family with sequence similarity 213 member A 2 2
MIRT646329 MVB12B multivesicular body subunit 12B 2 2
MIRT646817 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT647019 ADCY2 adenylate cyclase 2 2 2
MIRT647621 IGSF9B immunoglobulin superfamily member 9B 2 2
MIRT648517 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT648871 ABCA6 ATP binding cassette subfamily A member 6 2 2
MIRT649620 ITPKC inositol-trisphosphate 3-kinase C 2 2
MIRT650062 CCDC134 coiled-coil domain containing 134 2 2
MIRT650734 TNFSF8 TNF superfamily member 8 2 2
MIRT652389 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT654352 RBM27 RNA binding motif protein 27 2 2
MIRT655796 NOVA2 NOVA alternative splicing regulator 2 2 2
MIRT657329 HNRNPK heterogeneous nuclear ribonucleoprotein K 2 2
MIRT657734 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT660613 ANO6 anoctamin 6 2 2
MIRT661243 ARL17B ADP ribosylation factor like GTPase 17B 2 2
MIRT662245 PGBD4 piggyBac transposable element derived 4 2 2
MIRT662921 MED18 mediator complex subunit 18 2 2
MIRT662963 JPH2 junctophilin 2 2 2
MIRT663347 ZNF74 zinc finger protein 74 2 2
MIRT663528 MASTL microtubule associated serine/threonine kinase like 2 2
MIRT663547 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663977 ZNF786 zinc finger protein 786 2 2
MIRT664084 METTL2B methyltransferase like 2B 2 2
MIRT664358 C16orf45 chromosome 16 open reading frame 45 2 2
MIRT664421 TIGD6 tigger transposable element derived 6 2 2
MIRT664476 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT664979 TDRD1 tudor domain containing 1 2 2
MIRT665128 PYCRL pyrroline-5-carboxylate reductase 3 2 2
MIRT666259 SLC31A1 solute carrier family 31 member 1 2 2
MIRT666321 SLC16A10 solute carrier family 16 member 10 2 2
MIRT666881 POLQ DNA polymerase theta 2 2
MIRT668469 FADS6 fatty acid desaturase 6 2 2
MIRT669554 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT669835 ISCA2 iron-sulfur cluster assembly 2 2 2
MIRT670185 CCDC142 coiled-coil domain containing 142 2 2
MIRT672020 PXMP4 peroxisomal membrane protein 4 2 2
MIRT672070 KIAA0930 KIAA0930 2 2
MIRT672475 RTTN rotatin 2 2
MIRT672851 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT673090 AK1 adenylate kinase 1 2 2
MIRT673581 KDELC2 KDEL motif containing 2 2 2
MIRT674586 SLC35B4 solute carrier family 35 member B4 2 2
MIRT675001 STRN3 striatin 3 2 2
MIRT679018 MTMR10 myotubularin related protein 10 2 2
MIRT679680 STAT3 signal transducer and activator of transcription 3 2 2
MIRT682833 FLG2 filaggrin family member 2 2 2
MIRT682886 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT683442 AP3B2 adaptor related protein complex 3 beta 2 subunit 2 2
MIRT687040 RNF115 ring finger protein 115 2 2
MIRT691957 RHOH ras homolog family member H 2 2
MIRT694625 ZFPM1 zinc finger protein, FOG family member 1 2 2
MIRT695637 SLC26A2 solute carrier family 26 member 2 2 2
MIRT697640 WRN Werner syndrome RecQ like helicase 2 2
MIRT702009 MIDN midnolin 2 2
MIRT702034 MOGAT1 monoacylglycerol O-acyltransferase 1 2 2
MIRT704789 CDK6 cyclin dependent kinase 6 2 2
MIRT705728 AMMECR1L AMMECR1 like 2 2
MIRT705879 ADM adrenomedullin 2 2
MIRT706220 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT708418 CERS4 ceramide synthase 4 2 2
MIRT709114 C3orf18 chromosome 3 open reading frame 18 2 2
MIRT709595 ITPA inosine triphosphatase 2 2
MIRT710945 MRPL45 mitochondrial ribosomal protein L45 2 2
MIRT712345 NLN neurolysin 2 2
MIRT712530 CYTH2 cytohesin 2 2 2
MIRT714019 ASCC1 activating signal cointegrator 1 complex subunit 1 2 2
MIRT717287 ARMC12 armadillo repeat containing 12 2 2
MIRT717733 FGF1 fibroblast growth factor 1 2 2
MIRT718083 CLIC5 chloride intracellular channel 5 2 2
MIRT718562 MUC20 mucin 20, cell surface associated 2 2
MIRT721639 MYLK3 myosin light chain kinase 3 2 2
MIRT722632 C8A complement C8 alpha chain 2 2
MIRT723177 CDCA4 cell division cycle associated 4 2 2
MIRT725523 FAM229B family with sequence similarity 229 member B 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-500b Methotrexate 126941 NSC740 approved resistant cell line (W1)
hsa-miR-500b-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-500b-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-500b-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-500b-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-500b-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-500b-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)

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