pre-miRNA Information
pre-miRNA hsa-mir-6509   
Genomic Coordinates chr7: 135206994 - 135207078
Description Homo sapiens miR-6509 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6509-3p
Sequence 52| UUCCACUGCCACUACCUAAUUU |73
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs778601614 1 dbSNP
rs754554776 3 dbSNP
rs767798995 3 dbSNP
rs145322812 4 dbSNP
rs773941257 5 dbSNP
rs768273593 9 dbSNP
rs984565062 12 dbSNP
rs748872915 13 dbSNP
rs774861125 14 dbSNP
rs13241975 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZNF419   
Synonyms ZAPHIR, ZNF419A
Description zinc finger protein 419
Transcript NM_001098491   
Other Transcripts NM_001098492 , NM_001098493 , NM_001098494 , NM_001098495 , NM_001098496 , NM_024691   
Expression
Putative miRNA Targets on ZNF419
3'UTR of ZNF419
(miRNA target sites are highlighted)
>ZNF419|NM_001098491|3'UTR
   1 TTGTGTGAAATCCTTTAGCCAGCGTTTCAACCTCATTCAACACCAGAAAGTTCACAGTGGAAAAAATCTTGAAGGTAACA
  81 GATGGAAATCCGTTAGCCACACCTCCAGTCTCATTCAACACTGGACAGTTTACAATGTGGACAATGTAGTGAATATGGAA
 161 AAAGGTTTCAGCCAAAGGCCTAACCCTATTCAACACCAGAAAGTTTACACTGGAGAAAGGCCTTAGGGTGACAGGTTATG
 241 TACTGTCTCTGAATCAATATGACCTCACTTAAAACAGAAACTCTGAGGATGGCCTTTATGAGGGAGCTGGCAATTGAACA
 321 TCATTCATCTAAATATGCACACTGGAGGCAAGATGAGAATTCCTGACAGATTGTCCTTCCTGAGAAGACAGCCCTCTGCC
 401 TTGGAGCTCCAGAGAGAGGGAGCCCTGTATTCTTGGCTGTACCCGTCGAATGGAGTTTTGATCTCGCTGAGTTTGGAGTT
 481 GGGGGAGGAAAGGAGTGGTCTTGGTTCAAATGTGACTCACTTTTGCTGTTCTTGTGAATGTTAGATCTTCTTTAATAAAT
 561 ATTTATTTCCCATACACCCTTATGACCATTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uuuaaUCCAUC-ACCGUCACCUu 5'
               ||  || |  ||||||| 
Target 5' acaccAGAAAGTTCACAGTGGAa 3'
40 - 62 145.00 -12.30
2
miRNA  3' uuuaaUCCAUCACCGUC-ACCUu 5'
               |||||    ||| |||| 
Target 5' cttgaAGGTA---ACAGATGGAa 3'
68 - 87 118.00 -11.70
3
miRNA  3' uuUA-AUCCAUCAC-CGUCACCUu 5'
            || ||  || ||  || |||| 
Target 5' tcATCTAAATA-TGCACACTGGAg 3'
325 - 347 115.00 -5.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN29513388 2 COSMIC
COSN30466415 13 COSMIC
COSN30457313 35 COSMIC
COSN30107035 45 COSMIC
COSN30145753 61 COSMIC
COSN5852110 61 COSMIC
COSN31582094 64 COSMIC
COSN30493138 69 COSMIC
COSN30523172 80 COSMIC
COSN30484150 92 COSMIC
COSN30104835 93 COSMIC
COSN30106353 101 COSMIC
COSN16695331 136 COSMIC
COSN30170646 141 COSMIC
COSN31587046 145 COSMIC
COSN32055809 214 COSMIC
COSN28860875 467 COSMIC
COSN1772808 521 COSMIC
COSN6148089 679 COSMIC
COSN28832082 782 COSMIC
COSN16534597 877 COSMIC
COSN18985862 1078 COSMIC
COSN16140726 1613 COSMIC
COSN25410524 1710 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs773466269 2 dbSNP
rs759310412 3 dbSNP
rs1215778466 4 dbSNP
rs367559061 10 dbSNP
rs1254184407 13 dbSNP
rs752639504 14 dbSNP
rs370236575 15 dbSNP
rs115252895 19 dbSNP
rs200279723 24 dbSNP
rs756729768 25 dbSNP
rs780764342 27 dbSNP
rs1451440869 29 dbSNP
rs1184806238 31 dbSNP
rs750085313 33 dbSNP
rs1433978783 37 dbSNP
rs1176600688 40 dbSNP
rs1408048583 46 dbSNP
rs573455592 47 dbSNP
rs1393513708 56 dbSNP
rs545017799 57 dbSNP
rs1400466379 59 dbSNP
rs958987724 67 dbSNP
rs992876877 76 dbSNP
rs916942735 78 dbSNP
rs62126199 79 dbSNP
rs1465315394 83 dbSNP
rs1209382778 85 dbSNP
rs1362879707 91 dbSNP
rs574862007 92 dbSNP
rs1464044748 93 dbSNP
rs543927593 97 dbSNP
rs560605709 104 dbSNP
rs1253756547 105 dbSNP
rs1182081113 113 dbSNP
rs1203008400 118 dbSNP
rs1250617523 121 dbSNP
rs1472433261 128 dbSNP
rs1461685063 136 dbSNP
rs1265148719 148 dbSNP
rs533127141 156 dbSNP
rs34444112 159 dbSNP
rs1349972112 160 dbSNP
rs1280362402 167 dbSNP
rs1241392781 168 dbSNP
rs1414778474 179 dbSNP
rs1312419964 187 dbSNP
rs1408927989 193 dbSNP
rs1401774611 197 dbSNP
rs386811328 208 dbSNP
rs7248266 209 dbSNP
rs7248267 211 dbSNP
rs1450305848 212 dbSNP
rs560442616 215 dbSNP
rs1313654189 221 dbSNP
rs1050255132 229 dbSNP
rs1182743464 241 dbSNP
rs1445224445 244 dbSNP
rs1244907968 245 dbSNP
rs1186522046 256 dbSNP
rs1446524731 258 dbSNP
rs1285019393 260 dbSNP
rs1207162448 262 dbSNP
rs1354504357 265 dbSNP
rs1291584774 277 dbSNP
rs1407724749 281 dbSNP
rs532282400 285 dbSNP
rs1247194508 286 dbSNP
rs910436448 289 dbSNP
rs551832827 290 dbSNP
rs1289951061 305 dbSNP
rs944652004 307 dbSNP
rs1430577880 309 dbSNP
rs1325393298 310 dbSNP
rs1318369187 311 dbSNP
rs1402150119 314 dbSNP
rs1041420033 317 dbSNP
rs1162468684 318 dbSNP
rs1425070545 320 dbSNP
rs1218560421 321 dbSNP
rs994602777 324 dbSNP
rs1475025470 335 dbSNP
rs1047125592 337 dbSNP
rs888568852 338 dbSNP
rs1449882014 348 dbSNP
rs1005634987 353 dbSNP
rs1223457555 367 dbSNP
rs755193900 368 dbSNP
rs1034494526 380 dbSNP
rs571682419 387 dbSNP
rs1313372357 390 dbSNP
rs1210219327 393 dbSNP
rs1250545437 399 dbSNP
rs529405603 401 dbSNP
rs959190650 415 dbSNP
rs767537332 417 dbSNP
rs1270324686 418 dbSNP
rs1432303368 419 dbSNP
rs1343016811 421 dbSNP
rs1183946776 425 dbSNP
rs140323586 426 dbSNP
rs967061864 436 dbSNP
rs1367256345 440 dbSNP
rs977124874 445 dbSNP
rs1470757911 446 dbSNP
rs925654601 448 dbSNP
rs551097308 449 dbSNP
rs1477101965 450 dbSNP
rs113881060 454 dbSNP
rs567644557 464 dbSNP
rs1428628666 466 dbSNP
rs1200473109 467 dbSNP
rs1490891839 477 dbSNP
rs957118821 479 dbSNP
rs985931829 480 dbSNP
rs1275725780 482 dbSNP
rs879618825 485 dbSNP
rs910404434 491 dbSNP
rs1320831206 494 dbSNP
rs1370075446 499 dbSNP
rs944560679 500 dbSNP
rs58604999 503 dbSNP
rs1346993258 520 dbSNP
rs1296035354 532 dbSNP
rs1441217982 535 dbSNP
rs1310148011 536 dbSNP
rs1336124165 538 dbSNP
rs1468149943 546 dbSNP
rs752788641 548 dbSNP
rs1405486613 562 dbSNP
rs1177234336 567 dbSNP
rs553270758 570 dbSNP
rs1410047646 579 dbSNP
rs1176764151 586 dbSNP
rs567190283 588 dbSNP
rs1470734177 605 dbSNP
rs1234909638 610 dbSNP
rs368994699 614 dbSNP
rs370141033 614 dbSNP
rs1272939235 620 dbSNP
rs755980312 626 dbSNP
rs1369661281 627 dbSNP
rs919199393 631 dbSNP
rs1222805533 634 dbSNP
rs766091631 635 dbSNP
rs1273239708 636 dbSNP
rs1450439312 647 dbSNP
rs1381925976 658 dbSNP
rs1337244610 674 dbSNP
rs1470999143 674 dbSNP
rs777686776 682 dbSNP
rs1047051479 684 dbSNP
rs1206852769 692 dbSNP
rs888495788 696 dbSNP
rs1410704062 709 dbSNP
rs1005612062 714 dbSNP
rs1274919538 718 dbSNP
rs1244299053 723 dbSNP
rs558795368 726 dbSNP
rs1462287281 729 dbSNP
rs566264560 744 dbSNP
rs1214686932 747 dbSNP
rs1245445965 748 dbSNP
rs894633042 754 dbSNP
rs1194860484 759 dbSNP
rs1014870980 760 dbSNP
rs1381684470 769 dbSNP
rs4801490 782 dbSNP
rs1454462409 795 dbSNP
rs571719639 796 dbSNP
rs574447412 798 dbSNP
rs558140617 800 dbSNP
rs1347195194 801 dbSNP
rs998489360 802 dbSNP
rs1404493749 803 dbSNP
rs1424464551 809 dbSNP
rs1032691315 811 dbSNP
rs745490224 817 dbSNP
rs1259131534 818 dbSNP
rs371481230 819 dbSNP
rs1441513579 822 dbSNP
rs1485874278 824 dbSNP
rs1243491822 843 dbSNP
rs1219745560 846 dbSNP
rs1296876983 846 dbSNP
rs376582243 861 dbSNP
rs1292200840 863 dbSNP
rs1248133966 877 dbSNP
rs376591542 884 dbSNP
rs570431786 885 dbSNP
rs137971984 887 dbSNP
rs1301550802 903 dbSNP
rs965895701 909 dbSNP
rs1207744798 912 dbSNP
rs779651068 920 dbSNP
rs1305338383 923 dbSNP
rs149496489 927 dbSNP
rs1373020613 930 dbSNP
rs919140061 932 dbSNP
rs1425086678 948 dbSNP
rs1470154118 951 dbSNP
rs929231407 956 dbSNP
rs1269418377 962 dbSNP
rs1211429798 964 dbSNP
rs539100482 965 dbSNP
rs1247954119 984 dbSNP
rs1305849276 985 dbSNP
rs1250722414 986 dbSNP
rs1228006497 989 dbSNP
rs532301384 1012 dbSNP
rs34220079 1017 dbSNP
rs1281422773 1021 dbSNP
rs1223204806 1028 dbSNP
rs1346370050 1031 dbSNP
rs1285363924 1035 dbSNP
rs1390031486 1038 dbSNP
rs982724401 1040 dbSNP
rs1463553469 1044 dbSNP
rs746519828 1046 dbSNP
rs546141488 1051 dbSNP
rs1401894334 1054 dbSNP
rs909869661 1056 dbSNP
rs1258942447 1062 dbSNP
rs1479790907 1063 dbSNP
rs1429561447 1072 dbSNP
rs562726330 1073 dbSNP
rs530938094 1084 dbSNP
rs1249533930 1085 dbSNP
rs1161725851 1097 dbSNP
rs1196354696 1098 dbSNP
rs1415694199 1100 dbSNP
rs1055877892 1101 dbSNP
rs1319744715 1103 dbSNP
rs894591120 1104 dbSNP
rs1323139619 1110 dbSNP
rs1258015122 1113 dbSNP
rs950207030 1116 dbSNP
rs1335593552 1119 dbSNP
rs1308118297 1133 dbSNP
rs550990832 1135 dbSNP
rs768347662 1142 dbSNP
rs1046328827 1154 dbSNP
rs759194504 1156 dbSNP
rs903407817 1163 dbSNP
rs1406116159 1165 dbSNP
rs773754633 1166 dbSNP
rs187772978 1168 dbSNP
rs892793164 1172 dbSNP
rs1182247326 1175 dbSNP
rs771294910 1184 dbSNP
rs1241199215 1186 dbSNP
rs1017348884 1188 dbSNP
rs530119785 1217 dbSNP
rs10221501 1218 dbSNP
rs1203652433 1220 dbSNP
rs1350223615 1221 dbSNP
rs1261740853 1226 dbSNP
rs1242772915 1227 dbSNP
rs1207447653 1243 dbSNP
rs1262488291 1255 dbSNP
rs1357690238 1256 dbSNP
rs10221506 1263 dbSNP
rs1026578183 1268 dbSNP
rs950578898 1270 dbSNP
rs148182516 1274 dbSNP
rs1380225284 1280 dbSNP
rs558831077 1281 dbSNP
rs1158187844 1282 dbSNP
rs1421323779 1287 dbSNP
rs116123065 1291 dbSNP
rs537496991 1294 dbSNP
rs1445136894 1297 dbSNP
rs1159137584 1298 dbSNP
rs1239354901 1300 dbSNP
rs915965463 1301 dbSNP
rs1393794825 1306 dbSNP
rs116375198 1309 dbSNP
rs757176921 1316 dbSNP
rs1045876133 1329 dbSNP
rs903332048 1339 dbSNP
rs1489975591 1340 dbSNP
rs1415735055 1351 dbSNP
rs574511990 1355 dbSNP
rs1247431322 1360 dbSNP
rs1327584931 1364 dbSNP
rs1241787532 1365 dbSNP
rs1325315372 1366 dbSNP
rs1054703600 1369 dbSNP
rs1401442283 1371 dbSNP
rs192752083 1374 dbSNP
rs553803084 1375 dbSNP
rs1007187370 1376 dbSNP
rs1415892445 1387 dbSNP
rs1166047528 1392 dbSNP
rs572116442 1408 dbSNP
rs1282693192 1409 dbSNP
rs1486103682 1419 dbSNP
rs776501382 1433 dbSNP
rs901562910 1436 dbSNP
rs1181792624 1439 dbSNP
rs1453612242 1447 dbSNP
rs1271546314 1448 dbSNP
rs1249334361 1449 dbSNP
rs1195686246 1450 dbSNP
rs1420725477 1469 dbSNP
rs1182349044 1470 dbSNP
rs1220161809 1479 dbSNP
rs1343242883 1481 dbSNP
rs1282181759 1484 dbSNP
rs1377011196 1493 dbSNP
rs778717144 1494 dbSNP
rs10221524 1495 dbSNP
rs1326829233 1498 dbSNP
rs997658440 1505 dbSNP
rs1026093563 1506 dbSNP
rs950546639 1507 dbSNP
rs564183732 1514 dbSNP
rs1200366053 1520 dbSNP
rs1479223922 1526 dbSNP
rs1006050297 1532 dbSNP
rs1016097677 1535 dbSNP
rs1349008452 1543 dbSNP
rs545980883 1546 dbSNP
rs1199998948 1547 dbSNP
rs147528888 1550 dbSNP
rs769587414 1553 dbSNP
rs773371117 1558 dbSNP
rs1369513697 1559 dbSNP
rs531613745 1561 dbSNP
rs577861275 1562 dbSNP
rs1348765336 1564 dbSNP
rs766623931 1568 dbSNP
rs779845413 1569 dbSNP
rs1405383785 1575 dbSNP
rs751636016 1578 dbSNP
rs934811470 1585 dbSNP
rs1158342317 1586 dbSNP
rs759592337 1591 dbSNP
rs1431334382 1593 dbSNP
rs1241952128 1594 dbSNP
rs914792974 1595 dbSNP
rs561140591 1605 dbSNP
rs1313573841 1609 dbSNP
rs1195473311 1610 dbSNP
rs996023590 1615 dbSNP
rs1050236786 1616 dbSNP
rs1281626298 1618 dbSNP
rs182404771 1622 dbSNP
rs1354095267 1627 dbSNP
rs887585822 1627 dbSNP
rs1311406276 1631 dbSNP
rs1006723277 1635 dbSNP
rs1382182918 1635 dbSNP
rs1448420031 1635 dbSNP
rs1015009512 1636 dbSNP
rs1158571723 1636 dbSNP
rs1162267451 1636 dbSNP
rs1167475858 1636 dbSNP
rs1181949230 1636 dbSNP
rs1214566377 1636 dbSNP
rs1230107180 1636 dbSNP
rs1236169887 1636 dbSNP
rs1240029080 1636 dbSNP
rs1287858299 1636 dbSNP
rs1288534026 1636 dbSNP
rs1303497805 1636 dbSNP
rs1313270571 1636 dbSNP
rs1343667617 1636 dbSNP
rs1350977162 1636 dbSNP
rs1358630411 1636 dbSNP
rs1359907941 1636 dbSNP
rs1382532428 1636 dbSNP
rs1400802517 1636 dbSNP
rs1412516196 1636 dbSNP
rs1420727834 1636 dbSNP
rs1424353602 1636 dbSNP
rs1444554834 1636 dbSNP
rs1450534410 1636 dbSNP
rs1483906970 1636 dbSNP
rs532907966 1636 dbSNP
rs561512229 1636 dbSNP
rs570232341 1636 dbSNP
rs574918598 1636 dbSNP
rs747724405 1636 dbSNP
rs753978442 1636 dbSNP
rs1425057876 1646 dbSNP
rs1416749248 1654 dbSNP
rs1166268052 1663 dbSNP
rs1192542198 1663 dbSNP
rs1355944775 1664 dbSNP
rs1463818233 1665 dbSNP
rs1477942443 1673 dbSNP
rs1299076142 1675 dbSNP
rs1265141195 1676 dbSNP
rs1219995203 1679 dbSNP
rs1490106666 1681 dbSNP
rs1390528029 1685 dbSNP
rs1038673008 1687 dbSNP
rs543886078 1688 dbSNP
rs1371738651 1690 dbSNP
rs1305878287 1691 dbSNP
rs901494402 1698 dbSNP
rs1219537029 1699 dbSNP
rs1227777822 1711 dbSNP
rs1295612586 1716 dbSNP
rs1404754380 1716 dbSNP
rs997226934 1721 dbSNP
rs1460893721 1729 dbSNP
rs534294073 1732 dbSNP
rs886191802 1739 dbSNP
rs1264611373 1740 dbSNP
rs1465640443 1748 dbSNP
rs1005978368 1749 dbSNP
rs1487414440 1751 dbSNP
rs1267762315 1755 dbSNP
rs1192917381 1758 dbSNP
rs201435942 1759 dbSNP
rs959260696 1770 dbSNP
rs1012558810 1772 dbSNP
rs1320040679 1774 dbSNP
rs1261519584 1776 dbSNP
rs1223106980 1781 dbSNP
rs746716064 1786 dbSNP
rs796283182 1788 dbSNP
rs1303862082 1789 dbSNP
rs532831008 1790 dbSNP
rs1390228191 1793 dbSNP
rs1373268644 1794 dbSNP
rs1332553831 1808 dbSNP
rs563653921 1809 dbSNP
rs1446927929 1820 dbSNP
rs962388536 1822 dbSNP
rs1173874528 1825 dbSNP
rs140204324 1827 dbSNP
rs1378048673 1828 dbSNP
rs971793651 1830 dbSNP
rs1417014582 1838 dbSNP
rs566914422 1846 dbSNP
rs1237522171 1847 dbSNP
rs1179122210 1853 dbSNP
rs1459180192 1854 dbSNP
rs1186162235 1860 dbSNP
rs1241318224 1862 dbSNP
rs1421080197 1867 dbSNP
rs1200165657 1876 dbSNP
rs532605957 1896 dbSNP
rs529444732 1898 dbSNP
rs1257923343 1899 dbSNP
rs1237345165 1900 dbSNP
rs57142495 1902 dbSNP
rs768257721 1910 dbSNP
rs981502632 1910 dbSNP
rs1163707431 1911 dbSNP
rs924650510 1917 dbSNP
rs956116421 1918 dbSNP
rs1394888516 1919 dbSNP
rs1460211794 1929 dbSNP
rs1304180472 1930 dbSNP
rs552353436 1936 dbSNP
rs990287705 1945 dbSNP
rs1159216873 1946 dbSNP
rs1359560591 1947 dbSNP
rs914761900 1964 dbSNP
rs943580567 1965 dbSNP
rs1039687212 1969 dbSNP
rs923587027 1971 dbSNP
rs1434411698 1973 dbSNP
rs143973042 1974 dbSNP
rs1318586862 1975 dbSNP
rs932942045 1978 dbSNP
rs1287155093 1979 dbSNP
rs1243024162 1986 dbSNP
rs1357940377 1988 dbSNP
rs1382973895 1989 dbSNP
rs1312357931 1994 dbSNP
rs12978437 1996 dbSNP
rs886162486 2003 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B HITS-CLIP data was present in Chi_ControlA_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control A HITS-CLIP data was present in Chi_ControlB_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000415379.2 | 3UTR | GAAAGUUCACAGUGGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000415379.2 | 3UTR | GAAAGUUCACAGUGGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset Chi_ControlA_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control A
Location of target site ENST00000415379.2 | 3UTR | GAAAGUUCACAGUGGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset Chi_ControlB_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control B
Location of target site ENST00000415379.2 | 3UTR | GAAAGUUCACAGUGGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
82 hsa-miR-6509-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055374 PDCD4 programmed cell death 4 2 4
MIRT378341 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT444668 CDKL2 cyclin dependent kinase like 2 2 2
MIRT446953 CD248 CD248 molecule 2 2
MIRT460332 CAMK4 calcium/calmodulin dependent protein kinase IV 2 6
MIRT464078 VPS4A vacuolar protein sorting 4 homolog A 2 2
MIRT464586 UBN2 ubinuclein 2 2 2
MIRT468482 SESN3 sestrin 3 2 2
MIRT468962 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT475455 HSPA8 heat shock protein family A (Hsp70) member 8 2 2
MIRT482403 ADRB1 adrenoceptor beta 1 2 10
MIRT486992 ZFAND2B zinc finger AN1-type containing 2B 2 2
MIRT489397 TUBB2A tubulin beta 2A class IIa 2 2
MIRT526319 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526560 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT526732 ZNF138 zinc finger protein 138 2 8
MIRT531581 STXBP5L syntaxin binding protein 5 like 2 2
MIRT532011 NOX5 NADPH oxidase 5 2 2
MIRT533407 TXLNG taxilin gamma 2 2
MIRT533436 TRPC5 transient receptor potential cation channel subfamily C member 5 2 2
MIRT533866 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT539254 ANKRD50 ankyrin repeat domain 50 2 2
MIRT541451 C15orf48 chromosome 15 open reading frame 48 2 2
MIRT566794 MIER3 MIER family member 3 2 2
MIRT569294 SURF6 surfeit 6 2 2
MIRT571336 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT572802 PPP3CB protein phosphatase 3 catalytic subunit beta 2 2
MIRT572813 MYO1C myosin IC 2 2
MIRT574219 DMRT2 doublesex and mab-3 related transcription factor 2 2 2
MIRT607259 GRAMD1B GRAM domain containing 1B 2 4
MIRT609307 CHD4 chromodomain helicase DNA binding protein 4 2 2
MIRT615459 REPS1 RALBP1 associated Eps domain containing 1 2 2
MIRT616861 RPLP1 ribosomal protein lateral stalk subunit P1 2 2
MIRT619415 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT619652 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT625325 TNFRSF13B TNF receptor superfamily member 13B 2 2
MIRT638980 ARFIP2 ADP ribosylation factor interacting protein 2 2 2
MIRT639458 ZNF429 zinc finger protein 429 2 2
MIRT640550 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT641473 B4GALNT3 beta-1,4-N-acetyl-galactosaminyltransferase 3 2 2
MIRT642720 ATXN3 ataxin 3 2 2
MIRT643048 SMN1 survival of motor neuron 1, telomeric 2 2
MIRT644921 SMN2 survival of motor neuron 2, centromeric 2 2
MIRT645875 ZNF275 zinc finger protein 275 2 2
MIRT649824 LIPG lipase G, endothelial type 2 2
MIRT649851 GYS2 glycogen synthase 2 2 2
MIRT649972 TRAFD1 TRAF-type zinc finger domain containing 1 2 2
MIRT650675 ZNF259 ZPR1 zinc finger 1 1
MIRT651319 ZCCHC2 zinc finger CCHC-type containing 2 2 2
MIRT652876 TAB1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 2 2
MIRT652881 SYVN1 synoviolin 1 2 2
MIRT654144 RPAP2 RNA polymerase II associated protein 2 2 2
MIRT657080 JMY junction mediating and regulatory protein, p53 cofactor 2 2
MIRT657181 INO80C INO80 complex subunit C 2 2
MIRT657830 GJD3 gap junction protein delta 3 2 2
MIRT657897 GDF7 growth differentiation factor 7 2 2
MIRT659631 CDKN2AIP CDKN2A interacting protein 2 2
MIRT663115 SPTA1 spectrin alpha, erythrocytic 1 2 2
MIRT664739 METTL16 methyltransferase like 16 2 2
MIRT667551 LRAT lecithin retinol acyltransferase 2 2
MIRT668552 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT682893 XIAP X-linked inhibitor of apoptosis 2 2
MIRT683092 PRRG4 proline rich and Gla domain 4 2 2
MIRT683102 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT697648 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT709158 ZNF419 zinc finger protein 419 2 2
MIRT713220 RCAN2 regulator of calcineurin 2 2 2
MIRT713277 LAIR1 leukocyte associated immunoglobulin like receptor 1 2 2
MIRT715008 CYP1B1 cytochrome P450 family 1 subfamily B member 1 2 2
MIRT715051 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT715696 PNMAL2 paraneoplastic Ma antigen family member 8B 2 2
MIRT717250 TMEM246 transmembrane protein 246 2 2
MIRT717322 PGK1 phosphoglycerate kinase 1 2 2
MIRT717587 MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like 2 2
MIRT718122 CHST4 carbohydrate sulfotransferase 4 2 2
MIRT718418 CALN1 calneuron 1 2 2
MIRT718750 ZNF490 zinc finger protein 490 2 2
MIRT720048 PPP1R3F protein phosphatase 1 regulatory subunit 3F 2 2
MIRT721497 THRB thyroid hormone receptor beta 2 2
MIRT722531 EPRS glutamyl-prolyl-tRNA synthetase 2 2
MIRT723279 KRTAP21-2 keratin associated protein 21-2 2 2
MIRT724813 MSX2 msh homeobox 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6509-3p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-6509-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6509-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-6509-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-6509-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

Error report submission