pre-miRNA Information
pre-miRNA hsa-mir-4697   
Genomic Coordinates chr11: 133898504 - 133898581
Description Homo sapiens miR-4697 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4697-5p
Sequence 10| AGGGGGCGCAGUCACUGACGUG |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs549326907 2 dbSNP
rs897782230 7 dbSNP
rs748950280 8 dbSNP
rs978998780 15 dbSNP
rs968922289 19 dbSNP
rs3802919 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol MAPK8IP2   
Synonyms IB-2, IB2, JIP2, PRKM8IPL
Description mitogen-activated protein kinase 8 interacting protein 2
Transcript NM_012324   
Expression
Putative miRNA Targets on MAPK8IP2
3'UTR of MAPK8IP2
(miRNA target sites are highlighted)
>MAPK8IP2|NM_012324|3'UTR
   1 CCTGCCCACCGCTCTGTCTCCTGGCCGTCTGCTCCAGGCGCAGCTGGGGCTGAGGATGTCTCAAGAGGCCACCATGGCTT
  81 TGGCAAGGACTGGATTGGGGGGACATGGGACCTTACGCTTGTGGGGGTCTGCGGGCTGGGAACTCTCGTCCTCGGTCCCC
 161 AGGGCGCAGCTGTTGGGGCTGCGGGGGAGTGGAGCCCCCGTGCCCCTGCTTTTCCTCAGATCCGTTCTTTCTCTGTGTTG
 241 TCCTCCTCCTTCCCTTCCCAGTCTCCCTTTTCTCTCTCCTGGTGTCTCTGCCCCTCTCTGTGCCTGCAAACCTTATCCTC
 321 TATTCTTCACTTTGGGGTCAGAACTTCGGGGGTGTGGAGGAGGTGCGGCTCTAGGGACAGGTAATGTCGGCTTCCAAGTG
 401 ATGCCCTCCTGCCACTCCCCTGCGATTTATAAGGGAATTTTAATTTTTATAGTGAATCTCAAGGGATCATCCCATCCTTG
 481 ACCACAGGGACAAGAGGGGCCCCCTCGCCCCAGCCCCACCCCACATGGAGCTCAGGGGGAAGCAGGGAGGGGTTCCCAAA
 561 AGAGCCCTGCGGAGGCTAGGAGTGGTTCTTGATGCTCACCTGAAGCCCCTAGACGCTGCTAGGAGGGGGGGCCCTCCTGG
 641 GCCCCCAATACCCCTCCGCTTGCCGCTGCTAGCGCACCCCTGCAGTCCAGCGTGCATCCACCCCACGCACGCCCCGTGCT
 721 GTGTTCCTGGGCCCTGCCCATGGCCTCAATAAACTCTCTGCTTGGTGTGACATTGGCTGTTTCTAGAGGGTGCTAAGACA
 801 TGGGGCCAGGTGCCCAGGGGCTGCCCATTGTGGTAGGGACAGAGTCCCCAGTGGCGGGAGTGTTGTGGCAATCTCACCCT
 881 TTTAGCTCTTTCCGAAATTGTGCCGGGGGTCCCTGCGGTGCTGCTCTGGGGCCTTATCTGAGGTGCCGTATCTAGAAGCA
 961 CCCTTGGGAATTCTCCCTAGATACACTCGATTGGCCACAGAGGAATCCGAGGCTGTGCAATGGGGTGTCCTTTCCACGTG
1041 CACGGACTGGGGGCCAGCACGGCTCAGGTCAGTGTGTAGTGGGGGCATGAACTCCTTGAAGAACAATCTGGCCGGGCACG
1121 GTGGCTCACGCTTGTAATCCCAACACTTTGGGAGGCCGAGCCGGGGCGTATCACCTGAGGTCAGGAGTTTGAGACCAGCT
1201 TGGCCAACATGGTGAAACCCCATCTCCACAAAAAATACAAAAATTAGCTAGGTGTCCTGGCGCACACCTGTAATCCCAGC
1281 TACTCAGGAGGCTAAGGCATGAGAATCGCTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCAAGATTGCACCACTGCACT
1361 CCAGCCTGGGCGACAGAGGGAGACTCCGTCTCAGAAAAAGGAAAAGAAAAACAATCTACTTAGATCTTAAAATGGATATT
1441 TAAAAAATTCTCCAGAGAAAGCCAGAAGAAAATAGGTGACTTTTTCACTATGTGCTTAGGTGACTGCAGATGCCCGGCAA
1521 TGTTCCCTCCCAGGCCCTCCTGGGTGAGCCCGCCTCCCAGGCAGGGGTCAGCATGGCCGGGGTCCCTCTGTCTGAGCCCA
1601 GGATTCGTGCAACACCAGGAAGACAACAGTTGAAGGTTCCTTAGTGAGCTAAGGGAAGTATACACAAACTTACTACATAA
1681 ACATTAGAAAGTGCTGTCCGTAAAAAACACGTCTTCACAGAGCCAACAAGCAGAGAAATAGCTGCCCAGTGTTAGGAAGT
1761 GCATCATGATCCAGAGGTTCAGCCCGTGTGCAGCGCACAGACCTGAGGCCCCAGAGAGACCGAGGACGCAGACCAGTGGC
1841 ACGACGGAAACGCAGAACGTTTATGAGAAAACTTTCCTACTAATTGAGATAAAGCTGTAAAGAGGCAGATAGCCCCACTG
1921 GGTGTGTACGTTTGAAACTTGTGCCCCCTGGGCTAGGGCATTCGGGGTGTGGCCCTCAGTCCCCTGTAGCTGCTGCCTGG
2001 AAACCGCTGCCACCCACCCACCTCCTCCCTCTGCTCTTCCACTCAGGTGAGAATTCTCCAAGCCCTGCCCTCCGGCGCCC
2081 CCGTCCCGCCCCTGCCCGGCCTGGCCCCGCCCCTGCCCGGCCCCGCCCCCCAACGTGTCTTCAGGTCTCTTTCCCTCCAG
2161 CCGGCCCTTAGGACGGCTGTTGGACGTGCTCGTGAGTCCTTCGCCTGTCTGCCTTCCACCTCTCTGCAGCTCCTTCTCCA
2241 ATCTCATGGTCTTCTTGAGCTTGGCCGCCCTCCACGCCCCATGCTGGGCTTGGTCGGTTCTGGGGTCTACCTCTCTGGCT
2321 TCATCCCTCCCACAGTTTCGAGGGTTTCCCTGTGCTCAGGCCCCTGGCAGCCGCCCCCTGTGCAGACCACTGGGCAGATC
2401 CAGCTGACCTCCAGGGGCACTTCCTCGGCTCATCACTGGGCCGGTGCTCTGCAGAATGAGCTGTGAGAGCCACTGTGGCT
2481 GGCCAGAGGGTGCCACTCACAGTCACTTCAGACTCACAGGAGCCTTCGTCCCGACCCCTGCATTCATCTGTGTTCTGTTT
2561 TATGTTTTTTCCCAGTCACCTGAGCTGCAGGCCTTGGTCACCCCAGACTCCTCCCTCCTGTCACCCTTATCCTCACCCCA
2641 GCACCTTTACGTCTGCCCCAGGCTCCATTTCCCCCTCTTCTGCCTGGATCAAACCACCCTGACTTTCCTGGGTCTTCGTG
2721 CAACAGCCTGCTCCGGCCGCTGCCTCACTGCACCTGCAAATCCACTTGCACCCACACCCAGGCCAGGGTTTTTAAACAGA
2801 AGCCTCAGCAGATCCCTCTCTCTGGCCAGCTCCCTGTTGAACCAGGAAGCAGGTCCCTGTTGAACCTCAGCATGACCCGC
2881 CCCCACCCCTGCATCCCACTTCTGCTCTGGGAGCCTCTGGGTTCCTGGGCGCACCTGCTGCCCTTCCCTGTTTGTCACTG
2961 GGTGACCTCCCGTCCTTGTGGGCGCTCCCGGGCCCTGGTCTCGGGCCTTCTGAGGACTTGCTCTCCTGGTAGCGGCTGCT
3041 GACTGTGAGCCCAGAGAGCAGGCGTGGCTGTTGACCTTAGGTCCTCCCAGAACCTGGCGGATCGCCTGGCTCCCAGGCAG
3121 GAGGCGCTGCATGACGCCTCCAACTTCCGCCAATCTAGCCCAAGGATGGCGTTCTAAATAAAACGCGTTCTACAGAAAAG
3201 TG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' guGCAGUC--ACUGACGCGGGGGa 5'
            | ||||  ||||  ||||||| 
Target 5' aaCCTCAGCATGAC-CCGCCCCCa 3'
2863 - 2885 161.00 -22.80
2
miRNA  3' gugcAGUC-----ACUGAC-GCGGGGGa 5'
              ||||     ||:| | ||||||| 
Target 5' gtgcTCAGGCCCCTGGCAGCCGCCCCCt 3'
2352 - 2379 154.00 -23.80
3
miRNA  3' guGCAGUCACUG-ACGCGGGGGa 5'
            |||: |  || ||:|||||| 
Target 5' taCGTTTGAAACTTGTGCCCCCt 3'
1927 - 1949 148.00 -25.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN19668843 12 COSMIC
COSN26549943 17 COSMIC
COSN30145156 38 COSMIC
COSN30539555 53 COSMIC
COSN30633618 59 COSMIC
COSN30673262 96 COSMIC
COSN30042957 98 COSMIC
COSN19769173 110 COSMIC
COSN30122259 117 COSMIC
COSN31544995 143 COSMIC
COSN30166608 179 COSMIC
COSN24386283 183 COSMIC
COSN16996344 197 COSMIC
COSN31557365 224 COSMIC
COSN1263925 246 COSMIC
COSN31539581 283 COSMIC
COSN31545970 389 COSMIC
COSN31520403 425 COSMIC
COSN20914702 615 COSMIC
COSN21556885 666 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1186254738 6 dbSNP
rs112640312 11 dbSNP
rs955179584 12 dbSNP
rs760883087 13 dbSNP
rs764444733 25 dbSNP
rs753994966 26 dbSNP
rs369843319 27 dbSNP
rs778936596 28 dbSNP
rs1385979987 33 dbSNP
rs1395490828 34 dbSNP
rs750466161 36 dbSNP
rs372723789 40 dbSNP
rs567267312 41 dbSNP
rs769458829 48 dbSNP
rs1335100005 53 dbSNP
rs1181510163 55 dbSNP
rs1038006675 57 dbSNP
rs1471923754 63 dbSNP
rs1235057091 96 dbSNP
rs1205700660 97 dbSNP
rs919576782 102 dbSNP
rs929696347 104 dbSNP
rs192623307 106 dbSNP
rs1229052141 107 dbSNP
rs1335074432 112 dbSNP
rs183337968 114 dbSNP
rs1487621596 117 dbSNP
rs939490986 118 dbSNP
rs868317846 120 dbSNP
rs549909912 126 dbSNP
rs565536201 133 dbSNP
rs1347957678 134 dbSNP
rs745914380 136 dbSNP
rs1463246963 146 dbSNP
rs1437779252 148 dbSNP
rs747781847 149 dbSNP
rs1158548300 151 dbSNP
rs188124797 154 dbSNP
rs895203550 155 dbSNP
rs1477981601 156 dbSNP
rs1195862122 158 dbSNP
rs1468685074 159 dbSNP
rs553614719 166 dbSNP
rs1022419058 167 dbSNP
rs1318134875 168 dbSNP
rs1284326695 169 dbSNP
rs1218639998 172 dbSNP
rs903834905 177 dbSNP
rs549224923 181 dbSNP
rs900218390 183 dbSNP
rs999563226 184 dbSNP
rs1366366875 185 dbSNP
rs1459061228 188 dbSNP
rs1163657596 195 dbSNP
rs1320061961 198 dbSNP
rs1455726194 199 dbSNP
rs1031307363 200 dbSNP
rs572055286 201 dbSNP
rs1407745068 204 dbSNP
rs986592572 205 dbSNP
rs1018128149 224 dbSNP
rs1016126277 225 dbSNP
rs1454925391 239 dbSNP
rs536295023 243 dbSNP
rs1312029238 244 dbSNP
rs771633188 249 dbSNP
rs1186342570 255 dbSNP
rs899015969 262 dbSNP
rs1242233109 275 dbSNP
rs555299995 277 dbSNP
rs1208785642 279 dbSNP
rs1247196768 280 dbSNP
rs796767035 292 dbSNP
rs1234756001 294 dbSNP
rs1282330224 294 dbSNP
rs770117464 297 dbSNP
rs1266233960 304 dbSNP
rs963906057 308 dbSNP
rs1034855236 312 dbSNP
rs974225897 313 dbSNP
rs1289572478 318 dbSNP
rs919708247 321 dbSNP
rs929616667 323 dbSNP
rs1357963567 327 dbSNP
rs1483633377 347 dbSNP
rs369718524 348 dbSNP
rs145438321 349 dbSNP
rs1390016448 367 dbSNP
rs939615409 368 dbSNP
rs926181292 370 dbSNP
rs1056677826 377 dbSNP
rs975571237 379 dbSNP
rs543773994 388 dbSNP
rs948272616 389 dbSNP
rs1051892979 396 dbSNP
rs1482686375 399 dbSNP
rs1272264043 404 dbSNP
rs1170241578 406 dbSNP
rs1355502977 407 dbSNP
rs1053978682 408 dbSNP
rs1309513393 411 dbSNP
rs907518196 413 dbSNP
rs775558370 420 dbSNP
rs903951068 424 dbSNP
rs763393980 425 dbSNP
rs1377127183 428 dbSNP
rs565448219 450 dbSNP
rs1313784235 451 dbSNP
rs1055116007 457 dbSNP
rs548532377 457 dbSNP
rs1226665631 487 dbSNP
rs891014188 489 dbSNP
rs1055625175 492 dbSNP
rs895918162 497 dbSNP
rs1008140152 500 dbSNP
rs191343806 503 dbSNP
rs1020765061 507 dbSNP
rs967367112 510 dbSNP
rs1343537177 511 dbSNP
rs1249471301 512 dbSNP
rs183966508 516 dbSNP
rs1000119676 518 dbSNP
rs372128694 520 dbSNP
rs1483971451 523 dbSNP
rs1221193347 525 dbSNP
rs1200530312 528 dbSNP
rs1295250719 532 dbSNP
rs1233921424 534 dbSNP
rs1027120135 540 dbSNP
rs951178957 544 dbSNP
rs1393514806 553 dbSNP
rs1447227390 557 dbSNP
rs982814621 565 dbSNP
rs928298595 571 dbSNP
rs938392369 572 dbSNP
rs1165043659 578 dbSNP
rs1456216024 587 dbSNP
rs992354088 591 dbSNP
rs1190283147 592 dbSNP
rs1419592919 594 dbSNP
rs1390519532 604 dbSNP
rs916859572 605 dbSNP
rs948192432 607 dbSNP
rs1467326051 615 dbSNP
rs1275236856 616 dbSNP
rs922779039 625 dbSNP
rs954638567 625 dbSNP
rs1259026697 626 dbSNP
rs1043918604 627 dbSNP
rs1241894726 628 dbSNP
rs530032584 631 dbSNP
rs1303440933 633 dbSNP
rs935436982 638 dbSNP
rs1052555448 639 dbSNP
rs1301076189 645 dbSNP
rs891129094 647 dbSNP
rs1326088466 648 dbSNP
rs1433738248 649 dbSNP
rs1433118675 650 dbSNP
rs189430705 655 dbSNP
rs567830098 658 dbSNP
rs1008254663 659 dbSNP
rs1454289677 664 dbSNP
rs1366437957 666 dbSNP
rs777194547 667 dbSNP
rs1037331494 673 dbSNP
rs1299904598 674 dbSNP
rs920549513 675 dbSNP
rs1314447400 678 dbSNP
rs937262196 679 dbSNP
rs1056057766 689 dbSNP
rs1039626941 692 dbSNP
rs1233362294 693 dbSNP
rs1206953521 698 dbSNP
rs895669960 700 dbSNP
rs1255884939 705 dbSNP
rs1266867284 707 dbSNP
rs899760060 708 dbSNP
rs1463296487 711 dbSNP
rs1210156663 712 dbSNP
rs1227260667 715 dbSNP
rs563354274 716 dbSNP
rs995721833 717 dbSNP
rs1382257515 719 dbSNP
rs903238497 726 dbSNP
rs1026819908 728 dbSNP
rs1248222536 730 dbSNP
rs531601090 734 dbSNP
rs1436490328 741 dbSNP
rs951326590 745 dbSNP
rs538081144 746 dbSNP
rs1395530382 750 dbSNP
rs1488071578 753 dbSNP
rs1167696306 767 dbSNP
rs1475238030 773 dbSNP
rs1189232481 774 dbSNP
rs1195461456 778 dbSNP
rs1356877754 781 dbSNP
rs192550699 783 dbSNP
rs1035429986 785 dbSNP
rs964289166 796 dbSNP
rs959688667 798 dbSNP
rs991129231 801 dbSNP
rs916807233 806 dbSNP
rs1486920072 807 dbSNP
rs1411268047 817 dbSNP
rs997087014 817 dbSNP
rs1030302141 830 dbSNP
rs955579489 841 dbSNP
rs969671105 847 dbSNP
rs983319600 848 dbSNP
rs571401125 855 dbSNP
rs185057425 857 dbSNP
rs1436281889 859 dbSNP
rs1290899942 869 dbSNP
rs1416588415 870 dbSNP
rs961787008 881 dbSNP
rs973095507 884 dbSNP
rs925465976 886 dbSNP
rs935536105 888 dbSNP
rs920239554 889 dbSNP
rs1052500965 892 dbSNP
rs1475859345 894 dbSNP
rs912679909 895 dbSNP
rs1185866462 899 dbSNP
rs1476484616 903 dbSNP
rs1258778301 904 dbSNP
rs943988921 905 dbSNP
rs991435650 906 dbSNP
rs1275536979 907 dbSNP
rs764302370 913 dbSNP
rs746976057 917 dbSNP
rs775033101 918 dbSNP
rs190301049 919 dbSNP
rs1234537458 928 dbSNP
rs1356048043 933 dbSNP
rs1287575536 934 dbSNP
rs1439775238 941 dbSNP
rs1337375349 943 dbSNP
rs1041531388 948 dbSNP
rs1048831568 949 dbSNP
rs1393953459 949 dbSNP
rs1162912334 956 dbSNP
rs762363912 960 dbSNP
rs936072824 961 dbSNP
rs1004033653 974 dbSNP
rs1469048115 980 dbSNP
rs565828339 985 dbSNP
rs1029921812 986 dbSNP
rs79511770 990 dbSNP
rs1181427503 992 dbSNP
rs1004423842 997 dbSNP
rs749994804 1008 dbSNP
rs1012499069 1009 dbSNP
rs892684919 1010 dbSNP
rs961814631 1018 dbSNP
rs554569501 1021 dbSNP
rs755576316 1024 dbSNP
rs1409005774 1026 dbSNP
rs1324079786 1028 dbSNP
rs973167810 1033 dbSNP
rs1395365746 1035 dbSNP
rs1404919996 1036 dbSNP
rs556890029 1038 dbSNP
rs578260531 1039 dbSNP
rs576128039 1044 dbSNP
rs1159513206 1049 dbSNP
rs1454076962 1053 dbSNP
rs956881320 1054 dbSNP
rs1195161212 1057 dbSNP
rs991524633 1060 dbSNP
rs539352640 1061 dbSNP
rs559017849 1062 dbSNP
rs1349157152 1071 dbSNP
rs1241078052 1073 dbSNP
rs1212970633 1080 dbSNP
rs1448669974 1085 dbSNP
rs950002544 1095 dbSNP
rs912625429 1096 dbSNP
rs1345531610 1107 dbSNP
rs944105061 1109 dbSNP
rs975375837 1114 dbSNP
rs1226209061 1115 dbSNP
rs577355911 1117 dbSNP
rs1288376974 1118 dbSNP
rs541307578 1121 dbSNP
rs1322147642 1131 dbSNP
rs1319499914 1137 dbSNP
rs1204172117 1156 dbSNP
rs1054481732 1158 dbSNP
rs899879773 1159 dbSNP
rs753364525 1163 dbSNP
rs1454459912 1167 dbSNP
rs1184447869 1169 dbSNP
rs1476082565 1174 dbSNP
rs112222696 1175 dbSNP
rs891411494 1177 dbSNP
rs887040073 1180 dbSNP
rs1180392698 1197 dbSNP
rs1484648179 1210 dbSNP
rs1004450127 1211 dbSNP
rs1211263228 1217 dbSNP
rs369383183 1219 dbSNP
rs1425748414 1220 dbSNP
rs1295074876 1221 dbSNP
rs1015831593 1223 dbSNP
rs574553991 1232 dbSNP
rs541938717 1238 dbSNP
rs1486033355 1239 dbSNP
rs1414783932 1257 dbSNP
rs1432125501 1262 dbSNP
rs1315193674 1274 dbSNP
rs1308132577 1275 dbSNP
rs1435687994 1280 dbSNP
rs1353586970 1286 dbSNP
rs939835217 1293 dbSNP
rs1167945358 1295 dbSNP
rs995642053 1297 dbSNP
rs1419696959 1298 dbSNP
rs1056896324 1308 dbSNP
rs895537043 1309 dbSNP
rs563317549 1320 dbSNP
rs1023174828 1325 dbSNP
rs6010027 1326 dbSNP
rs1249379214 1329 dbSNP
rs1202740962 1331 dbSNP
rs958700016 1334 dbSNP
rs1258858027 1348 dbSNP
rs754832036 1356 dbSNP
rs1295046115 1362 dbSNP
rs1000297637 1363 dbSNP
rs1189619711 1366 dbSNP
rs1032566034 1372 dbSNP
rs971308565 1373 dbSNP
rs778628364 1375 dbSNP
rs1277805868 1379 dbSNP
rs1296806931 1381 dbSNP
rs200903824 1387 dbSNP
rs977324499 1388 dbSNP
rs117858897 1389 dbSNP
rs957207765 1392 dbSNP
rs945620677 1395 dbSNP
rs989901536 1396 dbSNP
rs1418396931 1401 dbSNP
rs1445391804 1402 dbSNP
rs975478495 1406 dbSNP
rs1388654344 1408 dbSNP
rs1451691772 1415 dbSNP
rs1238984230 1416 dbSNP
rs1213173552 1417 dbSNP
rs1332835602 1427 dbSNP
rs181858660 1433 dbSNP
rs141031973 1441 dbSNP
rs1316833460 1442 dbSNP
rs532333206 1442 dbSNP
rs547569175 1443 dbSNP
rs1335554326 1448 dbSNP
rs1486564964 1451 dbSNP
rs931304079 1453 dbSNP
rs565896281 1456 dbSNP
rs984548928 1468 dbSNP
rs1406364951 1469 dbSNP
rs939975348 1481 dbSNP
rs747914344 1486 dbSNP
rs1037295634 1490 dbSNP
rs898710602 1492 dbSNP
rs1318323453 1500 dbSNP
rs1367162219 1501 dbSNP
rs529784957 1506 dbSNP
rs908416819 1507 dbSNP
rs548332235 1511 dbSNP
rs1161064576 1513 dbSNP
rs1419406909 1514 dbSNP
rs894256703 1515 dbSNP
rs1342710649 1516 dbSNP
rs1217549331 1517 dbSNP
rs1280774863 1519 dbSNP
rs569653870 1521 dbSNP
rs1485830679 1523 dbSNP
rs536684992 1532 dbSNP
rs1208399746 1533 dbSNP
rs544747662 1538 dbSNP
rs948578548 1546 dbSNP
rs1044138365 1552 dbSNP
rs904283919 1553 dbSNP
rs553758419 1555 dbSNP
rs1381092623 1572 dbSNP
rs1477289122 1573 dbSNP
rs1173854301 1579 dbSNP
rs1031550917 1580 dbSNP
rs999839002 1581 dbSNP
rs1171510790 1585 dbSNP
rs1452824820 1586 dbSNP
rs1397048327 1591 dbSNP
rs1429323799 1597 dbSNP
rs1456231151 1600 dbSNP
rs777680506 1604 dbSNP
rs1427944378 1605 dbSNP
rs892686726 1607 dbSNP
rs559197151 1608 dbSNP
rs571007400 1623 dbSNP
rs1207449441 1626 dbSNP
rs150279971 1637 dbSNP
rs1280136251 1641 dbSNP
rs1382580761 1649 dbSNP
rs553118998 1654 dbSNP
rs1019904351 1659 dbSNP
rs965524952 1670 dbSNP
rs1275031430 1674 dbSNP
rs1226216778 1675 dbSNP
rs564995754 1677 dbSNP
rs1324216685 1678 dbSNP
rs997438358 1693 dbSNP
rs1329301394 1699 dbSNP
rs1028386124 1700 dbSNP
rs574715720 1705 dbSNP
rs1354681298 1710 dbSNP
rs1310851090 1712 dbSNP
rs1438459018 1715 dbSNP
rs138924644 1729 dbSNP
rs1404648060 1743 dbSNP
rs1324415809 1745 dbSNP
rs762061425 1747 dbSNP
rs376624861 1749 dbSNP
rs1173425746 1751 dbSNP
rs571970924 1757 dbSNP
rs953879763 1772 dbSNP
rs1371473939 1776 dbSNP
rs1195914742 1786 dbSNP
rs1478441352 1787 dbSNP
rs767719666 1791 dbSNP
rs750481043 1792 dbSNP
rs984104815 1795 dbSNP
rs1186287645 1796 dbSNP
rs761295042 1800 dbSNP
rs1266534648 1812 dbSNP
rs908531720 1818 dbSNP
rs961398854 1822 dbSNP
rs533088548 1823 dbSNP
rs917192704 1824 dbSNP
rs948528123 1827 dbSNP
rs1450418525 1829 dbSNP
rs1340886690 1836 dbSNP
rs557070588 1843 dbSNP
rs1327932478 1852 dbSNP
rs1391095948 1859 dbSNP
rs769700460 1865 dbSNP
rs780331440 1876 dbSNP
rs1466167120 1877 dbSNP
rs369790317 1880 dbSNP
rs545925167 1885 dbSNP
rs1474058526 1888 dbSNP
rs1238474161 1899 dbSNP
rs1181466753 1900 dbSNP
rs1435722962 1901 dbSNP
rs1239576280 1904 dbSNP
rs1198752401 1917 dbSNP
rs1008598252 1931 dbSNP
rs1270696071 1932 dbSNP
rs1235130407 1938 dbSNP
rs1041291179 1939 dbSNP
rs1278750585 1940 dbSNP
rs564510190 1945 dbSNP
rs1236524416 1947 dbSNP
rs996988631 1976 dbSNP
rs1028918415 1982 dbSNP
rs1472019382 1983 dbSNP
rs931542911 1986 dbSNP
rs952944241 1990 dbSNP
rs34002228 1996 dbSNP
rs1172600948 1997 dbSNP
rs1006048324 2007 dbSNP
rs7285093 2008 dbSNP
rs1323960565 2014 dbSNP
rs1407591330 2024 dbSNP
rs1415076895 2034 dbSNP
rs1158385789 2038 dbSNP
rs895319952 2046 dbSNP
rs1382533757 2047 dbSNP
rs1178908291 2048 dbSNP
rs1013724073 2050 dbSNP
rs149038198 2054 dbSNP
rs1223051724 2061 dbSNP
rs906921380 2065 dbSNP
rs1162452814 2071 dbSNP
rs559565519 2073 dbSNP
rs998516195 2074 dbSNP
rs1352631119 2075 dbSNP
rs1309712853 2076 dbSNP
rs1406844614 2083 dbSNP
rs1187840360 2085 dbSNP
rs1438655544 2085 dbSNP
rs866703468 2085 dbSNP
rs1001900836 2089 dbSNP
rs1351001093 2089 dbSNP
rs1318304043 2090 dbSNP
rs1399431520 2091 dbSNP
rs1362919995 2092 dbSNP
rs1159615565 2093 dbSNP
rs868790984 2093 dbSNP
rs1033834646 2094 dbSNP
rs1349784065 2095 dbSNP
rs1192455236 2096 dbSNP
rs1409301069 2096 dbSNP
rs1031289151 2098 dbSNP
rs1240988776 2098 dbSNP
rs1213640532 2099 dbSNP
rs1286468576 2099 dbSNP
rs1489224247 2100 dbSNP
rs1337775202 2101 dbSNP
rs1239979435 2102 dbSNP
rs1347469945 2103 dbSNP
rs1276707691 2104 dbSNP
rs1265050227 2105 dbSNP
rs1354741979 2108 dbSNP
rs1211986010 2109 dbSNP
rs1221135766 2109 dbSNP
rs1293222041 2111 dbSNP
rs1368451245 2114 dbSNP
rs1179425369 2115 dbSNP
rs1269666843 2115 dbSNP
rs1482984346 2115 dbSNP
rs1434443738 2116 dbSNP
rs1373259763 2117 dbSNP
rs1199763198 2119 dbSNP
rs1336722829 2119 dbSNP
rs1418245811 2120 dbSNP
rs1184201612 2121 dbSNP
rs1253300221 2123 dbSNP
rs888214869 2124 dbSNP
rs1005773671 2125 dbSNP
rs1484597426 2126 dbSNP
rs893084128 2126 dbSNP
rs1257510806 2127 dbSNP
rs1186463797 2130 dbSNP
rs112535271 2131 dbSNP
rs1216802255 2135 dbSNP
rs1320658751 2142 dbSNP
rs1279330293 2144 dbSNP
rs1414679464 2145 dbSNP
rs1028212673 2149 dbSNP
rs1304950619 2150 dbSNP
rs1448322248 2152 dbSNP
rs1353498161 2163 dbSNP
rs917140388 2164 dbSNP
rs1167747967 2165 dbSNP
rs1466688736 2166 dbSNP
rs5770943 2172 dbSNP
rs970380051 2175 dbSNP
rs1474183531 2177 dbSNP
rs1366339748 2192 dbSNP
rs866568156 2193 dbSNP
rs1483704006 2195 dbSNP
rs979922854 2204 dbSNP
rs954021646 2208 dbSNP
rs925769415 2214 dbSNP
rs986613781 2215 dbSNP
rs1258755244 2220 dbSNP
rs935887659 2221 dbSNP
rs961448082 2222 dbSNP
rs1229211943 2223 dbSNP
rs1369888247 2225 dbSNP
rs1372191091 2233 dbSNP
rs1053268690 2237 dbSNP
rs1306292622 2241 dbSNP
rs1448494835 2244 dbSNP
rs1400479514 2249 dbSNP
rs1324617026 2251 dbSNP
rs913001596 2253 dbSNP
rs1398777823 2255 dbSNP
rs754276786 2257 dbSNP
rs1392012261 2258 dbSNP
rs944333162 2260 dbSNP
rs919910040 2264 dbSNP
rs1040067129 2265 dbSNP
rs901392122 2268 dbSNP
rs1405487779 2279 dbSNP
rs997500245 2280 dbSNP
rs186422771 2283 dbSNP
rs1338920208 2289 dbSNP
rs1248649351 2290 dbSNP
rs1238884573 2292 dbSNP
rs1316113986 2294 dbSNP
rs369750653 2296 dbSNP
rs888595809 2297 dbSNP
rs879358645 2301 dbSNP
rs1005746937 2304 dbSNP
rs949584025 2306 dbSNP
rs1267708452 2312 dbSNP
rs1222922425 2314 dbSNP
rs530630709 2316 dbSNP
rs1316738276 2341 dbSNP
rs1307530050 2343 dbSNP
rs1046554936 2351 dbSNP
rs1377107091 2360 dbSNP
rs1302064971 2364 dbSNP
rs774908317 2367 dbSNP
rs1253575880 2373 dbSNP
rs897263765 2374 dbSNP
rs1294088904 2375 dbSNP
rs1480707432 2380 dbSNP
rs1452927682 2381 dbSNP
rs1199385377 2385 dbSNP
rs1253649207 2391 dbSNP
rs1014169597 2394 dbSNP
rs551844860 2399 dbSNP
rs1024265930 2406 dbSNP
rs892817896 2410 dbSNP
rs1193114409 2411 dbSNP
rs1431564873 2423 dbSNP
rs1269520967 2432 dbSNP
rs1192354484 2435 dbSNP
rs1485821075 2439 dbSNP
rs1284340104 2444 dbSNP
rs1219163764 2452 dbSNP
rs1011207993 2454 dbSNP
rs970115735 2471 dbSNP
rs980422490 2505 dbSNP
rs1032951558 2518 dbSNP
rs762239283 2528 dbSNP
rs570444329 2529 dbSNP
rs988663808 2533 dbSNP
rs1301352864 2536 dbSNP
rs1381633565 2541 dbSNP
rs1008514167 2542 dbSNP
rs912949244 2542 dbSNP
rs1374605480 2543 dbSNP
rs1373556611 2546 dbSNP
rs1172254707 2548 dbSNP
rs56001589 2556 dbSNP
rs961479352 2556 dbSNP
rs1199601000 2565 dbSNP
rs975864514 2565 dbSNP
rs553282606 2572 dbSNP
rs568303322 2575 dbSNP
rs1454748440 2589 dbSNP
rs1196323771 2597 dbSNP
rs1337605223 2602 dbSNP
rs773843534 2603 dbSNP
rs1226635557 2611 dbSNP
rs1257212094 2616 dbSNP
rs1050416490 2625 dbSNP
rs535691994 2640 dbSNP
rs1346665259 2652 dbSNP
rs1256087295 2657 dbSNP
rs35864844 2671 dbSNP
rs1226011632 2672 dbSNP
rs941501663 2673 dbSNP
rs1280076571 2688 dbSNP
rs1400505726 2691 dbSNP
rs1354657623 2693 dbSNP
rs1331936903 2696 dbSNP
rs1037163576 2697 dbSNP
rs897209818 2698 dbSNP
rs557032036 2699 dbSNP
rs949652351 2700 dbSNP
rs868142499 2708 dbSNP
rs1014282538 2713 dbSNP
rs113071284 2718 dbSNP
rs1247003659 2719 dbSNP
rs1173498954 2735 dbSNP
rs760245626 2736 dbSNP
rs935477665 2737 dbSNP
rs1185792566 2738 dbSNP
rs1188038713 2739 dbSNP
rs905839342 2740 dbSNP
rs1001558660 2749 dbSNP
rs1456101134 2767 dbSNP
rs1259423969 2772 dbSNP
rs1219236578 2777 dbSNP
rs1052811707 2781 dbSNP
rs765767056 2782 dbSNP
rs947081629 2788 dbSNP
rs957315493 2789 dbSNP
rs1335160691 2790 dbSNP
rs988611570 2794 dbSNP
rs1020122108 2802 dbSNP
rs779138113 2804 dbSNP
rs965907609 2805 dbSNP
rs188720416 2810 dbSNP
rs1376038890 2814 dbSNP
rs1333428258 2816 dbSNP
rs975812353 2817 dbSNP
rs112485522 2823 dbSNP
rs1470986009 2825 dbSNP
rs180798670 2827 dbSNP
rs1388177106 2831 dbSNP
rs1433356030 2833 dbSNP
rs753550626 2844 dbSNP
rs1040961648 2853 dbSNP
rs984490852 2861 dbSNP
rs1369383580 2866 dbSNP
rs1177701519 2877 dbSNP
rs1437420445 2880 dbSNP
rs1239481122 2885 dbSNP
rs910084554 2887 dbSNP
rs1450995175 2903 dbSNP
rs1287581071 2906 dbSNP
rs1211541051 2908 dbSNP
rs1356834172 2921 dbSNP
rs941623346 2925 dbSNP
rs1278729996 2932 dbSNP
rs1239764760 2934 dbSNP
rs1363296619 2942 dbSNP
rs1374871081 2948 dbSNP
rs144563337 2949 dbSNP
rs1299779730 2970 dbSNP
rs1447549717 2976 dbSNP
rs1349352949 2985 dbSNP
rs1325128288 2991 dbSNP
rs1322194946 2992 dbSNP
rs1037276575 2998 dbSNP
rs1407575622 2999 dbSNP
rs573217531 3001 dbSNP
rs759158519 3003 dbSNP
rs1267173017 3004 dbSNP
rs541317844 3014 dbSNP
rs559726131 3016 dbSNP
rs1158359822 3022 dbSNP
rs1417491224 3029 dbSNP
rs1326554691 3036 dbSNP
rs1178738148 3042 dbSNP
rs764836211 3048 dbSNP
rs1045778243 3050 dbSNP
rs1244438529 3051 dbSNP
rs1027071635 3053 dbSNP
rs1452095574 3060 dbSNP
rs574679149 3062 dbSNP
rs952822530 3064 dbSNP
rs1242451292 3066 dbSNP
rs369699121 3070 dbSNP
rs752551923 3071 dbSNP
rs1189455499 3077 dbSNP
rs1288487644 3087 dbSNP
rs1270946598 3100 dbSNP
rs1367078454 3101 dbSNP
rs1012695020 3116 dbSNP
rs1481499539 3120 dbSNP
rs1023621891 3126 dbSNP
rs541997086 3127 dbSNP
rs1455797778 3134 dbSNP
rs1001904700 3136 dbSNP
rs1298008476 3147 dbSNP
rs1398491419 3149 dbSNP
rs1362819754 3150 dbSNP
rs1054470957 3169 dbSNP
rs1158912743 3170 dbSNP
rs1413546593 3171 dbSNP
rs140510 3173 dbSNP
rs1173760622 3187 dbSNP
rs1457699656 3190 dbSNP
rs1478317525 3192 dbSNP
rs982348428 3196 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B HITS-CLIP data was present in Chi_ControlA_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control A HITS-CLIP data was present in Chi_ControlB_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000399908.2 | 3UTR | CUCAGCAUGACCCGCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000399908.2 | 3UTR | CUCAGCAUGACCCGCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset Chi_ControlA_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control A
Location of target site ENST00000399908.2 | 3UTR | CUCAGCAUGACCCGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset Chi_ControlB_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control B
Location of target site ENST00000399908.2 | 3UTR | CUCAGCAUGACCCGCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
67 hsa-miR-4697-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT441332 C19orf26 CACN beta subunit associated regulatory protein 2 4
MIRT451390 FARSA phenylalanyl-tRNA synthetase alpha subunit 2 2
MIRT452310 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 2
MIRT455043 MEN1 menin 1 2 2
MIRT455256 DDX39B DExD-box helicase 39B 2 10
MIRT461279 COX10 COX10, heme A:farnesyltransferase cytochrome c oxidase assembly factor 2 2
MIRT464945 TXLNA taxilin alpha 2 4
MIRT468043 SIK1 salt inducible kinase 1 2 2
MIRT472523 NACC1 nucleus accumbens associated 1 2 2
MIRT472929 MSN moesin 2 2
MIRT473247 MIDN midnolin 2 2
MIRT475828 HDGF heparin binding growth factor 2 2
MIRT478744 CS citrate synthase 2 2
MIRT480081 CALR calreticulin 2 2
MIRT483482 STMN3 stathmin 3 2 4
MIRT483643 QSOX2 quiescin sulfhydryl oxidase 2 2 4
MIRT483721 THSD4 thrombospondin type 1 domain containing 4 2 2
MIRT484539 BARHL1 BarH like homeobox 1 2 6
MIRT486041 WSCD1 WSC domain containing 1 2 4
MIRT486142 SIX5 SIX homeobox 5 2 6
MIRT486498 MYH11 myosin heavy chain 11 2 2
MIRT486977 STEAP3 STEAP3 metalloreductase 2 4
MIRT487279 AGPAT6 glycerol-3-phosphate acyltransferase 4 2 4
MIRT487742 MIB2 mindbomb E3 ubiquitin protein ligase 2 2 2
MIRT487987 RXRB retinoid X receptor beta 2 2
MIRT488338 PAX2 paired box 2 2 2
MIRT488668 WWP2 WW domain containing E3 ubiquitin protein ligase 2 2 4
MIRT488752 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT488812 TBC1D28 TBC1 domain family member 28 2 2
MIRT489380 RAB11B RAB11B, member RAS oncogene family 2 2
MIRT489744 TACC3 transforming acidic coiled-coil containing protein 3 2 2
MIRT489960 GNB2 G protein subunit beta 2 2 2
MIRT490418 VPS51 VPS51, GARP complex subunit 2 4
MIRT490639 FEM1A fem-1 homolog A 2 2
MIRT491086 MSI1 musashi RNA binding protein 1 2 4
MIRT491298 VGF VGF nerve growth factor inducible 2 4
MIRT491366 SLC12A5 solute carrier family 12 member 5 2 2
MIRT492464 RASD1 ras related dexamethasone induced 1 2 4
MIRT492872 NFIX nuclear factor I X 2 2
MIRT492951 NEUROD2 neuronal differentiation 2 2 2
MIRT493704 H2AFX H2A histone family member X 2 2
MIRT493977 EIF1 eukaryotic translation initiation factor 1 2 4
MIRT500360 ZNF385A zinc finger protein 385A 2 2
MIRT501154 SLC10A7 solute carrier family 10 member 7 2 6
MIRT509625 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT512232 ATG2A autophagy related 2A 2 8
MIRT529822 ARGFX arginine-fifty homeobox 2 4
MIRT531179 SIGLEC12 sialic acid binding Ig like lectin 12 (gene/pseudogene) 2 2
MIRT538971 BCL7A BCL tumor suppressor 7A 2 2
MIRT548357 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 4
MIRT553634 TJAP1 tight junction associated protein 1 2 2
MIRT558050 EVI5L ecotropic viral integration site 5 like 2 2
MIRT562548 CCDC71L coiled-coil domain containing 71 like 2 4
MIRT568941 RUNX3 runt related transcription factor 3 2 2
MIRT569114 ONECUT3 one cut homeobox 3 2 2
MIRT573591 CERS1 ceramide synthase 1 2 2
MIRT619317 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT621202 ARPC1B actin related protein 2/3 complex subunit 1B 2 2
MIRT628844 FAM151B family with sequence similarity 151 member B 2 2
MIRT670497 LYRM4 LYR motif containing 4 2 2
MIRT670545 SHISA2 shisa family member 2 2 2
MIRT671026 PCDHB2 protocadherin beta 2 2 2
MIRT688989 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT709275 MAPK8IP2 mitogen-activated protein kinase 8 interacting protein 2 2 2
MIRT715084 ELOF1 elongation factor 1 homolog 2 2
MIRT718348 NPBWR1 neuropeptides B and W receptor 1 2 2
MIRT737406 MMP7 matrix metallopeptidase 7 2 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4697 Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-4697-5p Fulvestrant 17756771 NSC719276 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-4697-5p Paclitaxel 36314 NSC125973 approved resistant High Breast Cancer cell line (Bads-200, Bats-72, BCap37)
hsa-miR-4697-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (total RNA)
hsa-miR-4697-5p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-4697-5p Cisplatin 5460033 NSC119875 approved resistant cell line (MGC-803)
hsa-miR-4697-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-4697-5p Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-4697-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)
hsa-miR-4697-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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