pre-miRNA Information
pre-miRNA hsa-mir-7107   
Genomic Coordinates chr12: 121444273 - 121444352
Description Homo sapiens miR-7107 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-7107-5p
Sequence 6| UCGGCCUGGGGAGGAGGAAGGG |27
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs782634189 2 dbSNP
rs782536354 3 dbSNP
rs1230027540 4 dbSNP
rs539127530 5 dbSNP
rs782765349 9 dbSNP
rs55671311 10 dbSNP
rs183760300 11 dbSNP
rs782805318 12 dbSNP
rs782108772 19 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZBED1   
Synonyms ALTE, DREF, TRAMP, hDREF
Description zinc finger BED-type containing 1
Transcript NM_001171135   
Other Transcripts NM_001171136 , NM_004729   
Expression
Putative miRNA Targets on ZBED1
3'UTR of ZBED1
(miRNA target sites are highlighted)
>ZBED1|NM_001171135|3'UTR
   1 CGAGGAAGCGTGTTGTCTTACAAGTCATCCCCGCAGCAGCCCATTGGATGCTTTGCTGTAAATACTTACCCGGTCAGCTT
  81 GGTTTTGAACCTCAGAGACCATCCACTGTCTTTGACACCTAGAAGGTGGAAAAAGGAAAGAGATTTGAGAAGTGAGAGAG
 161 GGTCGGGGGCGGTGGCTCCTGTCTATAATCGCAGCACTTTGGGAGGCCGAGGTGGGCAGATCAGCTGAGGTCAGGAGATC
 241 GAGACCAGCCTGGCCAACATGGCGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCAGGACTGATGGCATGTGCCTG
 321 TAATCCCAGCTTCTGGAGGCTGAGGCCAGAGAATCGCTTGAACCTGGGAGGTGGAGGTTGCAGTAAGCTGAGATCGCTGC
 401 ACTCCAGCCTGGGCGACAAGAGCGAGACTCTCTCAAAAAGAAAAAAGAAGACACAAGAGAGGTGGCTTTGAGTGGGTTTC
 481 CTTTCCTCCCCTATTCCCGGGGCCCGGACGACTTCTGCTTGGGAACTGCCAACGCTTCTGCTTGGGAATTGCGTGCAGCA
 561 GAGCCTAGAGGAGCTGTTCCTTCCTTCACAGATACTTAAGACCTCCACCATGTCTGATTCGAGTTCTCCCTGGGAGGGTT
 641 TAGAAGAAACGCAGGAACATTCTGGGTGGCGTCGAAGGAGCCTTTCCCGATCATCATGTGTGACTTCTGCGAGGTCCAGA
 721 TCACTGAATTCATGTTTACATTCTCGTGCAAGCAGGGACCTCTTGCTTCTGAGAAATGGGGAAGAGACCTTTTAGCCAAA
 801 ATGCCCTTCTTAAAAAGAGAGACCTTTTTTTTTAATGTTCGGTTAAAAATGTGACAGATGAGTACAAAAATGCAGACACT
 881 TAACAAAAAGCAAACAGAAAAAAAAGTGTGGAATGTGTTGTATTTTCGACAGGTTGCTGCCAGAGAGCCTGCTTCCTGCT
 961 GCCTGCCGAAATTTCACTTTGCGGAGTTGGTCCTTAAAACTGGGCGGTGGCCGGGCGTGGTGGCTCACGCTGAGGTCAGG
1041 AGTTCGAGACCAGCCTGGCCAACCAACATGGTGAAACCTCGTGTCTACTAAAAATACAAGAAACTAGCCAGATGCGGTGG
1121 CACCCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCGGAAGATTCGCTTGAGCCCAGGAGGTGGAGGTTGCAGTGAGC
1201 CAAGACTACGCCACTGCACTCCAGCCTGGAGGCCAGAGTGAGACTCCGTCTCAAAACAAAACAAAAGTGGGTGGCTCACG
1281 GGTCCGGAGGTTATGTCTTCGGTGTCTCAGCCCTAAAAGTCCAGTTCCCCCGTGCGGCCAGCTTTTCCACATAAGGTGTT
1361 TTTGATTTGATTACCGGAAAGGACTCTTGATTCTTCTCTTTTAAACTGAATACCATAGGGGAAATGAATTTTAAAATATT
1441 GCCCCCGGAGGGGTTTTCCGTGGCTGGATTCCTGCGAGTTGCTTTCAGTCATTCAGGGAAACAGAAAGACGTTTTCCAAC
1521 ATGTAGAACTGCTTTTTAACTGGAGGAAAAATACTTCAGGAGGCTTAGCATATTGCTTGGATTCTACGTGCAGCGGGTTC
1601 TCTGCCTCCGTGAAGACAAGCTGGGCTGGGGAGAACGGTGTCTAGGAGGGATGACCCCACTCAGCTCCAGGCAGTGTTCT
1681 GCCGAGACCCCAAGAACTCGGGGTGTCAGAGGGCAAAGGAACTACCTGCCTTTCACGGCTGCTGACTTCTCAGGGCTGCA
1761 AGCAGCACAGAATGTTATCCTTACGTCCTGAGCCGGTTTAAGTCTGTGGAAAAGGAAGCACGGGAGAAATCCACGTAACC
1841 TTTGCTTTCTTTTTAAGGGAAGCGGTTCCGCCGTGAACTTGGAACCCTCAGCTCCGGGTGTTCTCGGCAGAAGGGCAGCT
1921 GGAAGGGACACAGTGGGGCAGGCTTTGGGGTTGCTCCCTGTTCTGCCCCGAGGCCGGGGACGCAGGGCAGCCCACGCCTC
2001 CGTGGGCTCCATTCTGTAGCATTGCCAGCGTTCTCTTCACGTCTCTAACAATCCTTCGCTTTTCCTCACTCACGTGGAAA
2081 TGTGAACTGTCCCGGCTCTGTCTTCATTTTTATTTTTAAGCCATCGTTCCCCTCCTGAACGGTTGCCCCTTATTTAATGC
2161 TGTAAAGTTGGACTGTTGTTCAATAAACCAGAGCAATGCATTAGCTCCTCATTCATTTGTCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ggGAAGG--AGGA-GGGG-UCCGGCu 5'
            || ||  |:|| |||| |||||| 
Target 5' tgCTCCCTGTTCTGCCCCGAGGCCGg 3'
1952 - 1977 138.00 -32.20
2
miRNA  3' gggaagGAGGAGGGGUCCGGCu 5'
                |||  |:|||||| | 
Target 5' accccaCTCAGCTCCAGGCAGt 3'
1654 - 1675 128.00 -26.12
3
miRNA  3' ggGAAGGAGG----AGGGGUCC--GGCu 5'
            :|||||||    |:|||:||  ||| 
Target 5' ccTTTCCTCCCCTATTCCCGGGGCCCGg 3'
480 - 507 122.00 -33.10
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs759195164 1 dbSNP
rs897185301 2 dbSNP
rs773835779 4 dbSNP
rs186763014 9 dbSNP
rs770418143 10 dbSNP
rs199777292 15 dbSNP
rs377189160 18 dbSNP
rs1206769009 20 dbSNP
rs531609492 21 dbSNP
rs372729369 23 dbSNP
rs747281418 27 dbSNP
rs1308366800 29 dbSNP
rs201120535 32 dbSNP
rs772200024 33 dbSNP
rs745945246 35 dbSNP
rs777744032 41 dbSNP
rs756022792 42 dbSNP
rs1391645589 43 dbSNP
rs1292495017 44 dbSNP
rs752527455 48 dbSNP
rs781071374 50 dbSNP
rs369440446 51 dbSNP
rs1464745293 57 dbSNP
rs937793650 71 dbSNP
rs760651828 72 dbSNP
rs774964103 72 dbSNP
rs981898139 73 dbSNP
rs1425572260 87 dbSNP
rs377027599 98 dbSNP
rs1228933182 100 dbSNP
rs913600200 116 dbSNP
rs1269518384 119 dbSNP
rs745469660 128 dbSNP
rs1365850331 140 dbSNP
rs1229892303 143 dbSNP
rs4892932 146 dbSNP
rs1210029636 147 dbSNP
rs1291640961 148 dbSNP
rs957878423 155 dbSNP
rs770158143 159 dbSNP
rs181626638 161 dbSNP
rs1322236887 162 dbSNP
rs1033229664 164 dbSNP
rs1349218598 165 dbSNP
rs1007543017 170 dbSNP
rs1406575376 171 dbSNP
rs373435372 174 dbSNP
rs1165212099 175 dbSNP
rs954249429 191 dbSNP
rs1449626739 199 dbSNP
rs1391180844 205 dbSNP
rs1389222601 208 dbSNP
rs1437224019 216 dbSNP
rs1190903375 220 dbSNP
rs4892931 224 dbSNP
rs1246617467 229 dbSNP
rs1204860007 230 dbSNP
rs73622930 231 dbSNP
rs1466561621 239 dbSNP
rs747586768 240 dbSNP
rs1453435006 241 dbSNP
rs780217283 243 dbSNP
rs897216352 251 dbSNP
rs1037457636 262 dbSNP
rs1227965935 263 dbSNP
rs1005511527 264 dbSNP
rs1299629073 267 dbSNP
rs1412395009 269 dbSNP
rs758564362 271 dbSNP
rs1366881447 272 dbSNP
rs750624285 272 dbSNP
rs7061377 273 dbSNP
rs1335636993 275 dbSNP
rs1438469372 278 dbSNP
rs1055084621 285 dbSNP
rs1288645261 286 dbSNP
rs1331649400 300 dbSNP
rs4892841 303 dbSNP
rs1483875035 317 dbSNP
rs753552308 318 dbSNP
rs1371989073 321 dbSNP
rs1046252189 327 dbSNP
rs945123097 334 dbSNP
rs1414534557 338 dbSNP
rs1170929180 344 dbSNP
rs1173993101 347 dbSNP
rs1376940136 348 dbSNP
rs1466508443 351 dbSNP
rs1174288445 354 dbSNP
rs185447406 355 dbSNP
rs1408754779 356 dbSNP
rs1308257708 358 dbSNP
rs1351957190 373 dbSNP
rs1403431225 376 dbSNP
rs989556508 377 dbSNP
rs1313254632 382 dbSNP
rs1236026121 385 dbSNP
rs1192292421 395 dbSNP
rs1250173809 407 dbSNP
rs180935834 414 dbSNP
rs1249791384 415 dbSNP
rs1254165168 423 dbSNP
rs910205784 424 dbSNP
rs1196955581 426 dbSNP
rs1204512394 427 dbSNP
rs1483526034 432 dbSNP
rs1433608974 434 dbSNP
rs758781817 435 dbSNP
rs1208221264 446 dbSNP
rs1371333368 446 dbSNP
rs1311421131 447 dbSNP
rs1371974030 447 dbSNP
rs1428470057 447 dbSNP
rs1301635276 452 dbSNP
rs1220885959 453 dbSNP
rs1368715564 456 dbSNP
rs954280662 456 dbSNP
rs1294050913 457 dbSNP
rs1365105455 457 dbSNP
rs1029798070 471 dbSNP
rs976864714 485 dbSNP
rs961443715 486 dbSNP
rs1348543077 488 dbSNP
rs766969257 489 dbSNP
rs1488683406 498 dbSNP
rs1409880062 499 dbSNP
rs1006041900 505 dbSNP
rs3203783 506 dbSNP
rs1465175653 507 dbSNP
rs773955070 509 dbSNP
rs1350174462 510 dbSNP
rs1034079900 515 dbSNP
rs1287499024 524 dbSNP
rs7057630 526 dbSNP
rs1436502927 528 dbSNP
rs878969238 533 dbSNP
rs1380660310 534 dbSNP
rs1227883160 540 dbSNP
rs1313627504 542 dbSNP
rs749030283 552 dbSNP
rs1266048922 553 dbSNP
rs1464308349 556 dbSNP
rs1209249351 594 dbSNP
rs1410351662 604 dbSNP
rs1459586101 610 dbSNP
rs1180774459 616 dbSNP
rs1181608667 619 dbSNP
rs1046283529 620 dbSNP
rs1254017338 621 dbSNP
rs1180339225 628 dbSNP
rs1483014789 630 dbSNP
rs945154174 636 dbSNP
rs1447315914 638 dbSNP
rs1303524811 639 dbSNP
rs1381567696 648 dbSNP
rs1222252057 649 dbSNP
rs1288019989 653 dbSNP
rs1211967808 655 dbSNP
rs1228847153 658 dbSNP
rs1269866361 661 dbSNP
rs1310378698 670 dbSNP
rs1327056176 671 dbSNP
rs1237581234 673 dbSNP
rs776855918 674 dbSNP
rs1250703912 680 dbSNP
rs1473085893 681 dbSNP
rs1228890455 688 dbSNP
rs1351806311 689 dbSNP
rs148140814 692 dbSNP
rs1177480424 697 dbSNP
rs1200720218 699 dbSNP
rs1360948375 700 dbSNP
rs1440182882 701 dbSNP
rs146352397 710 dbSNP
rs1379445934 711 dbSNP
rs1410139790 715 dbSNP
rs910245883 716 dbSNP
rs1342734340 732 dbSNP
rs1417026443 739 dbSNP
rs1303828567 740 dbSNP
rs985730118 745 dbSNP
rs531791384 746 dbSNP
rs1386844707 748 dbSNP
rs1202415521 756 dbSNP
rs1273394643 759 dbSNP
rs1483192758 760 dbSNP
rs780728788 776 dbSNP
rs1184737690 777 dbSNP
rs1245316621 784 dbSNP
rs1159111441 788 dbSNP
rs1192272868 789 dbSNP
rs142128071 794 dbSNP
rs1408208699 800 dbSNP
rs932922172 809 dbSNP
rs922817725 818 dbSNP
rs1431893814 825 dbSNP
rs976895843 833 dbSNP
rs1329115512 834 dbSNP
rs199973728 834 dbSNP
rs961601537 840 dbSNP
rs139031976 841 dbSNP
rs1296273053 854 dbSNP
rs1342309275 858 dbSNP
rs1162755262 865 dbSNP
rs1287373498 879 dbSNP
rs1016175574 885 dbSNP
rs1248901273 898 dbSNP
rs376350137 898 dbSNP
rs757404975 898 dbSNP
rs1491300677 899 dbSNP
rs1187957656 905 dbSNP
rs1390830555 906 dbSNP
rs1257097273 910 dbSNP
rs1451461198 917 dbSNP
rs1183769242 919 dbSNP
rs754151921 927 dbSNP
rs17842876 935 dbSNP
rs1002183569 936 dbSNP
rs906454353 937 dbSNP
rs1432774428 942 dbSNP
rs755929136 947 dbSNP
rs1209295780 948 dbSNP
rs371217707 957 dbSNP
rs1024927988 963 dbSNP
rs1263242106 968 dbSNP
rs1230066500 974 dbSNP
rs752594902 982 dbSNP
rs1355220213 983 dbSNP
rs892321110 990 dbSNP
rs1054012850 999 dbSNP
rs1208625248 1000 dbSNP
rs767414569 1005 dbSNP
rs936446760 1009 dbSNP
rs759521539 1012 dbSNP
rs1368066778 1013 dbSNP
rs1363470412 1017 dbSNP
rs1165263420 1026 dbSNP
rs751022170 1028 dbSNP
rs1455499286 1029 dbSNP
rs1319808686 1030 dbSNP
rs1389287507 1031 dbSNP
rs1331649764 1045 dbSNP
rs1436536286 1046 dbSNP
rs1339472448 1063 dbSNP
rs1387771784 1066 dbSNP
rs932954351 1071 dbSNP
rs1285646330 1080 dbSNP
rs1327510473 1086 dbSNP
rs1228236839 1097 dbSNP
rs5982689 1098 dbSNP
rs5982688 1100 dbSNP
rs71281911 1101 dbSNP
rs1369091716 1107 dbSNP
rs5983102 1112 dbSNP
rs1255515874 1113 dbSNP
rs908741013 1114 dbSNP
rs1189859268 1115 dbSNP
rs984668725 1116 dbSNP
rs1389391799 1117 dbSNP
rs1158171534 1118 dbSNP
rs769093131 1123 dbSNP
rs5982687 1124 dbSNP
rs1170791500 1125 dbSNP
rs1448708476 1126 dbSNP
rs926657251 1127 dbSNP
rs1348256200 1129 dbSNP
rs980778068 1135 dbSNP
rs970754265 1136 dbSNP
rs6641862 1137 dbSNP
rs1209111517 1145 dbSNP
rs1255981826 1151 dbSNP
rs140484923 1158 dbSNP
rs58942031 1159 dbSNP
rs1032192658 1161 dbSNP
rs1001066128 1167 dbSNP
rs888878261 1175 dbSNP
rs1252236937 1178 dbSNP
rs1420708454 1182 dbSNP
rs1196651615 1188 dbSNP
rs1050166550 1189 dbSNP
rs1297413050 1192 dbSNP
rs1466045352 1205 dbSNP
rs1174997327 1208 dbSNP
rs1229557057 1209 dbSNP
rs778849565 1210 dbSNP
rs1308307493 1221 dbSNP
rs901540886 1224 dbSNP
rs1385516532 1225 dbSNP
rs1035974495 1230 dbSNP
rs1332188953 1231 dbSNP
rs5983101 1233 dbSNP
rs908765311 1245 dbSNP
rs142145386 1246 dbSNP
rs931441866 1247 dbSNP
rs1305022093 1248 dbSNP
rs1428138474 1254 dbSNP
rs926773551 1259 dbSNP
rs1433731115 1262 dbSNP
rs1370156735 1266 dbSNP
rs1387758671 1267 dbSNP
rs67311651 1267 dbSNP
rs72419312 1267 dbSNP
rs970786892 1268 dbSNP
rs1169042519 1277 dbSNP
rs1476285752 1278 dbSNP
rs756370574 1279 dbSNP
rs1062804 1280 dbSNP
rs781024548 1285 dbSNP
rs1433646599 1289 dbSNP
rs1319195081 1290 dbSNP
rs1364534172 1300 dbSNP
rs956652506 1301 dbSNP
rs1297913218 1302 dbSNP
rs193102780 1304 dbSNP
rs1242288228 1313 dbSNP
rs1000781781 1318 dbSNP
rs953252040 1327 dbSNP
rs1215467689 1331 dbSNP
rs142680965 1332 dbSNP
rs765749043 1335 dbSNP
rs1188651853 1353 dbSNP
rs762546394 1362 dbSNP
rs1274883613 1369 dbSNP
rs190480549 1375 dbSNP
rs901573489 1376 dbSNP
rs1463400692 1380 dbSNP
rs545258230 1391 dbSNP
rs1157584863 1405 dbSNP
rs1036007083 1406 dbSNP
rs5939480 1412 dbSNP
rs761605657 1424 dbSNP
rs887377751 1425 dbSNP
rs1395645777 1426 dbSNP
rs1049158646 1439 dbSNP
rs1473026109 1442 dbSNP
rs1332172072 1444 dbSNP
rs1234907332 1445 dbSNP
rs185336084 1446 dbSNP
rs1408052157 1449 dbSNP
rs193152547 1459 dbSNP
rs772628685 1460 dbSNP
rs1411805355 1465 dbSNP
rs1482018927 1468 dbSNP
rs1399818197 1472 dbSNP
rs1256504275 1475 dbSNP
rs187281785 1476 dbSNP
rs1180488816 1481 dbSNP
rs1411811506 1487 dbSNP
rs1466550223 1506 dbSNP
rs1161977819 1508 dbSNP
rs917966355 1510 dbSNP
rs949465353 1510 dbSNP
rs1303571329 1511 dbSNP
rs182618423 1518 dbSNP
rs1416338467 1519 dbSNP
rs1286256568 1526 dbSNP
rs1349694181 1551 dbSNP
rs935364062 1557 dbSNP
rs925304964 1558 dbSNP
rs1471996376 1566 dbSNP
rs979782043 1578 dbSNP
rs1251824134 1579 dbSNP
rs770879425 1584 dbSNP
rs1440322648 1587 dbSNP
rs1486461480 1588 dbSNP
rs953284132 1592 dbSNP
rs1179457823 1594 dbSNP
rs1277029489 1595 dbSNP
rs144417178 1602 dbSNP
rs975865827 1606 dbSNP
rs965771842 1609 dbSNP
rs1428035461 1610 dbSNP
rs191660998 1616 dbSNP
rs1257490802 1618 dbSNP
rs1442746004 1619 dbSNP
rs1227057260 1620 dbSNP
rs1328591134 1621 dbSNP
rs769993290 1626 dbSNP
rs6567595 1634 dbSNP
rs1303546432 1635 dbSNP
rs780900145 1636 dbSNP
rs1338925945 1637 dbSNP
rs1333309405 1638 dbSNP
rs1207077546 1642 dbSNP
rs1027306323 1650 dbSNP
rs1407965730 1652 dbSNP
rs867980730 1653 dbSNP
rs1488455574 1657 dbSNP
rs73622928 1659 dbSNP
rs1396948644 1660 dbSNP
rs1447800660 1665 dbSNP
rs905419583 1671 dbSNP
rs746873106 1672 dbSNP
rs1045259044 1674 dbSNP
rs949496136 1683 dbSNP
rs1412138695 1684 dbSNP
rs896647188 1699 dbSNP
rs1159787769 1700 dbSNP
rs1326563884 1712 dbSNP
rs1471627785 1721 dbSNP
rs1225548866 1726 dbSNP
rs1236509451 1736 dbSNP
rs1052987867 1737 dbSNP
rs1187748438 1739 dbSNP
rs1228699055 1741 dbSNP
rs1462071611 1743 dbSNP
rs1288127686 1746 dbSNP
rs1451447139 1747 dbSNP
rs1214853882 1749 dbSNP
rs1255521842 1752 dbSNP
rs1245284954 1759 dbSNP
rs1188022950 1760 dbSNP
rs935410934 1761 dbSNP
rs1207407310 1763 dbSNP
rs1476531101 1764 dbSNP
rs1161720739 1768 dbSNP
rs1411340544 1770 dbSNP
rs925305292 1775 dbSNP
rs780070615 1778 dbSNP
rs1396613179 1781 dbSNP
rs1432198689 1784 dbSNP
rs1319337803 1785 dbSNP
rs979428397 1786 dbSNP
rs1432427749 1790 dbSNP
rs1354572635 1792 dbSNP
rs931919883 1793 dbSNP
rs921814135 1794 dbSNP
rs758306450 1795 dbSNP
rs975898410 1796 dbSNP
rs1384741955 1797 dbSNP
rs1318279723 1798 dbSNP
rs965886692 1798 dbSNP
rs1014759797 1799 dbSNP
rs1434365072 1800 dbSNP
rs983632795 1801 dbSNP
rs1319771140 1809 dbSNP
rs1185684467 1814 dbSNP
rs17842875 1821 dbSNP
rs1027738113 1822 dbSNP
rs1188415041 1827 dbSNP
rs1419887936 1829 dbSNP
rs1455543903 1830 dbSNP
rs764897841 1832 dbSNP
rs905458781 1834 dbSNP
rs1023923255 1835 dbSNP
rs1013827610 1840 dbSNP
rs896686005 1849 dbSNP
rs1415731072 1855 dbSNP
rs1187064936 1859 dbSNP
rs1349064950 1861 dbSNP
rs1228296585 1863 dbSNP
rs571642601 1864 dbSNP
rs1352842521 1868 dbSNP
rs1243178795 1869 dbSNP
rs935421380 1870 dbSNP
rs1486137314 1872 dbSNP
rs1449971164 1880 dbSNP
rs1471519312 1885 dbSNP
rs1289168533 1887 dbSNP
rs1364317884 1891 dbSNP
rs1470849182 1894 dbSNP
rs903897015 1895 dbSNP
rs186875190 1896 dbSNP
rs1361855407 1902 dbSNP
rs1295177965 1905 dbSNP
rs1227366401 1906 dbSNP
rs1391180417 1911 dbSNP
rs182611885 1916 dbSNP
rs767714447 1917 dbSNP
rs931952899 1921 dbSNP
rs1044300 1927 dbSNP
rs944620059 1930 dbSNP
rs907710983 1932 dbSNP
rs1272842864 1941 dbSNP
rs1348813059 1947 dbSNP
rs983268160 1949 dbSNP
rs1195027429 1956 dbSNP
rs951907395 1958 dbSNP
rs1439525140 1960 dbSNP
rs1196720639 1965 dbSNP
rs138959560 1969 dbSNP
rs1454381018 1970 dbSNP
rs1368285313 1974 dbSNP
rs1167158907 1975 dbSNP
rs1387949705 1976 dbSNP
rs920330545 1981 dbSNP
rs1420619873 1982 dbSNP
rs9577 1985 dbSNP
rs191988188 1992 dbSNP
rs1236596653 1993 dbSNP
rs1295606243 1995 dbSNP
rs1341754408 1996 dbSNP
rs969736057 1998 dbSNP
rs1207977279 2001 dbSNP
rs773276549 2002 dbSNP
rs1468491006 2008 dbSNP
rs1023975544 2013 dbSNP
rs769867685 2015 dbSNP
rs960954434 2017 dbSNP
rs1272777185 2021 dbSNP
rs1340502819 2027 dbSNP
rs1204647375 2029 dbSNP
rs1375124765 2030 dbSNP
rs141975587 2030 dbSNP
rs999674635 2035 dbSNP
rs1274792061 2040 dbSNP
rs1443136480 2041 dbSNP
rs1318660680 2045 dbSNP
rs148093324 2049 dbSNP
rs1382968352 2051 dbSNP
rs1044307 2057 dbSNP
rs996197135 2065 dbSNP
rs1406224247 2067 dbSNP
rs1348038553 2069 dbSNP
rs900547723 2073 dbSNP
rs1320978402 2074 dbSNP
rs746786189 2076 dbSNP
rs1265667743 2078 dbSNP
rs1485290230 2079 dbSNP
rs779762493 2080 dbSNP
rs1462120215 2081 dbSNP
rs1040321344 2084 dbSNP
rs1172983312 2089 dbSNP
rs1413304483 2093 dbSNP
rs369012694 2094 dbSNP
rs549553894 2111 dbSNP
rs1463450678 2122 dbSNP
rs745864650 2125 dbSNP
rs1344673747 2137 dbSNP
rs778494938 2140 dbSNP
rs149345567 2147 dbSNP
rs1290789631 2153 dbSNP
rs1400361628 2157 dbSNP
rs1412653667 2158 dbSNP
rs1292416021 2162 dbSNP
rs1355904042 2164 dbSNP
rs1235042699 2170 dbSNP
rs1249619437 2173 dbSNP
rs1304866295 2179 dbSNP
rs1048036473 2182 dbSNP
rs753489764 2183 dbSNP
rs1262078391 2188 dbSNP
rs1484506005 2190 dbSNP
rs7891627 2194 dbSNP
rs1258628858 2201 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_ControlB_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gggaaggaggaggggUCCGGCu 5'
                         |||||| 
Target 5' --gcagcacuuugggAGGCCGa 3'
1 - 20
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_ControlB_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control B
Location of target site ENST00000381223.4 | 3UTR | GCAGCACUUUGGGAGGCCGAGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
144 hsa-miR-7107-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT060580 CCND1 cyclin D1 2 4
MIRT451035 ZNF610 zinc finger protein 610 2 2
MIRT485711 CASP16 caspase 16, pseudogene 2 8
MIRT488402 TDRKH tudor and KH domain containing 2 2
MIRT492084 TCF21 transcription factor 21 2 2
MIRT504213 VAV3 vav guanine nucleotide exchange factor 3 2 13
MIRT505723 SERTAD3 SERTA domain containing 3 2 4
MIRT509007 FBXO6 F-box protein 6 2 2
MIRT509843 FOS Fos proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT514761 RBM4B RNA binding motif protein 4B 2 2
MIRT515664 LRRC27 leucine rich repeat containing 27 2 2
MIRT516316 F8A2 coagulation factor VIII associated 2 2 2
MIRT516342 F8A3 coagulation factor VIII associated 3 2 2
MIRT517139 KCTD21 potassium channel tetramerization domain containing 21 2 2
MIRT518746 C1orf35 chromosome 1 open reading frame 35 2 2
MIRT519299 MLH1 mutL homolog 1 2 2
MIRT521527 QSOX1 quiescin sulfhydryl oxidase 1 2 4
MIRT531756 TXK TXK tyrosine kinase 2 2
MIRT542208 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542235 FUT9 fucosyltransferase 9 2 2
MIRT542791 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT554378 SETD5 SET domain containing 5 2 2
MIRT569908 PCSK9 proprotein convertase subtilisin/kexin type 9 2 2
MIRT570222 SLC27A1 solute carrier family 27 member 1 2 2
MIRT570976 RGS19 regulator of G protein signaling 19 2 2
MIRT573046 SHMT1 serine hydroxymethyltransferase 1 2 2
MIRT574954 Vav3 vav 3 oncogene 2 8
MIRT609297 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT612990 GBX2 gastrulation brain homeobox 2 2 2
MIRT613851 SHB SH2 domain containing adaptor protein B 2 2
MIRT613935 POLR3A RNA polymerase III subunit A 2 2
MIRT614243 WDR53 WD repeat domain 53 2 4
MIRT615158 SPIB Spi-B transcription factor 2 2
MIRT616145 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT616389 C1orf87 chromosome 1 open reading frame 87 2 2
MIRT617737 ATCAY ATCAY, caytaxin 2 4
MIRT621449 TCN2 transcobalamin 2 2 2
MIRT625784 GCNT1 glucosaminyl (N-acetyl) transferase 1, core 2 2 2
MIRT628556 MELK maternal embryonic leucine zipper kinase 2 2
MIRT632041 ZNF430 zinc finger protein 430 2 2
MIRT634937 GTF2H2C GTF2H2 family member C 2 4
MIRT637208 MEAF6 MYST/Esa1 associated factor 6 2 2
MIRT637610 LOH12CR1 BLOC-1 related complex subunit 5 2 2
MIRT637832 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT638107 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT638387 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT641689 SPCS1 signal peptidase complex subunit 1 2 2
MIRT642611 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT643850 LACTB lactamase beta 2 4
MIRT649575 PALD1 phosphatase domain containing, paladin 1 2 2
MIRT649860 WDR12 WD repeat domain 12 2 2
MIRT651026 ZNF699 zinc finger protein 699 2 2
MIRT652336 TMOD3 tropomodulin 3 2 4
MIRT653286 SMURF2 SMAD specific E3 ubiquitin protein ligase 2 2 2
MIRT656292 METTL14 methyltransferase like 14 2 2
MIRT656458 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT659539 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT661537 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT668042 GTPBP10 GTP binding protein 10 2 2
MIRT668147 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT668800 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT669818 STOML1 stomatin like 1 2 2
MIRT670490 DCUN1D2 defective in cullin neddylation 1 domain containing 2 2 2
MIRT670615 NPHP1 nephrocystin 1 2 2
MIRT670892 CYTIP cytohesin 1 interacting protein 2 2
MIRT670943 LIPG lipase G, endothelial type 2 2
MIRT671268 MTRNR2L5 MT-RNR2-like 5 2 2
MIRT671903 GBP4 guanylate binding protein 4 2 2
MIRT672239 ABHD15 abhydrolase domain containing 15 2 2
MIRT672326 C9orf3 chromosome 9 open reading frame 3 2 2
MIRT673113 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT674412 GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 2 2
MIRT677718 IRF1 interferon regulatory factor 1 2 2
MIRT678585 PPP1R3B protein phosphatase 1 regulatory subunit 3B 2 2
MIRT678726 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT679338 ISG20L2 interferon stimulated exonuclease gene 20 like 2 2 2
MIRT679614 RRP36 ribosomal RNA processing 36 2 2
MIRT679695 SLC1A5 solute carrier family 1 member 5 2 4
MIRT679715 RPL24 ribosomal protein L24 2 2
MIRT680065 CD96 CD96 molecule 2 2
MIRT683379 ESR2 estrogen receptor 2 2 2
MIRT683683 MICA MHC class I polypeptide-related sequence A 2 2
MIRT683865 OCIAD1 OCIA domain containing 1 2 2
MIRT684073 TLR7 toll like receptor 7 2 2
MIRT684126 CEP104 centrosomal protein 104 2 2
MIRT684485 GPR137B G protein-coupled receptor 137B 2 2
MIRT684736 DNAJB13 DnaJ heat shock protein family (Hsp40) member B13 2 2
MIRT684778 MYO1F myosin IF 2 2
MIRT685028 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT685189 DCTN5 dynactin subunit 5 2 2
MIRT685307 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT685514 MSH3 mutS homolog 3 2 2
MIRT685702 BHMT2 betaine--homocysteine S-methyltransferase 2 2 2
MIRT685944 PTGIS prostaglandin I2 synthase 2 2
MIRT686311 VPS53 VPS53, GARP complex subunit 2 2
MIRT686686 TIMM10 translocase of inner mitochondrial membrane 10 2 2
MIRT687641 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT687923 HOOK3 hook microtubule tethering protein 3 2 2
MIRT688117 GEMIN8 gem nuclear organelle associated protein 8 2 2
MIRT688460 DNAJB4 DnaJ heat shock protein family (Hsp40) member B4 2 2
MIRT688629 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT688823 CAPZA2 capping actin protein of muscle Z-line alpha subunit 2 2 2
MIRT689117 ZBTB25 zinc finger and BTB domain containing 25 2 2
MIRT689166 ZNF665 zinc finger protein 665 2 2
MIRT690070 MBD1 methyl-CpG binding domain protein 1 2 2
MIRT690733 IRAK4 interleukin 1 receptor associated kinase 4 2 2
MIRT691324 KIAA1841 KIAA1841 2 2
MIRT691517 ZNF682 zinc finger protein 682 2 2
MIRT691607 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT692314 RFK riboflavin kinase 2 2
MIRT692376 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT692436 METTL8 methyltransferase like 8 2 2
MIRT692782 SYNPO2L synaptopodin 2 like 2 2
MIRT693136 THEM4 thioesterase superfamily member 4 2 2
MIRT693422 TECPR2 tectonin beta-propeller repeat containing 2 2 2
MIRT693871 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT694049 PRIM1 DNA primase subunit 1 2 2
MIRT694092 KIAA0930 KIAA0930 2 2
MIRT694190 ZNF347 zinc finger protein 347 2 2
MIRT695177 SLC25A33 solute carrier family 25 member 33 2 2
MIRT696180 GNB5 G protein subunit beta 5 2 2
MIRT697387 ZMAT3 zinc finger matrin-type 3 2 2
MIRT698924 SPEM1 spermatid maturation 1 2 2
MIRT699314 SLC35F5 solute carrier family 35 member F5 2 4
MIRT701106 PAPD5 poly(A) RNA polymerase D5, non-canonical 2 2
MIRT701575 MYPN myopalladin 2 2
MIRT701825 MRPL37 mitochondrial ribosomal protein L37 2 2
MIRT702047 METTL21A methyltransferase like 21A 2 2
MIRT703034 HAS2 hyaluronan synthase 2 2 4
MIRT704143 DNAL1 dynein axonemal light chain 1 2 2
MIRT704759 CDKN2AIPNL CDKN2A interacting protein N-terminal like 2 2
MIRT705079 C4orf29 abhydrolase domain containing 18 2 2
MIRT705346 ATP1B3 ATPase Na+/K+ transporting subunit beta 3 2 2
MIRT706104 ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT709070 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT709534 ZBED1 zinc finger BED-type containing 1 2 2
MIRT712356 NAT14 N-acetyltransferase 14 (putative) 2 2
MIRT713713 PAOX polyamine oxidase 2 2
MIRT714304 ZNF454 zinc finger protein 454 2 2
MIRT714919 PPP1R12C protein phosphatase 1 regulatory subunit 12C 2 2
MIRT715792 TBL3 transducin beta like 3 2 2
MIRT717376 RBM41 RNA binding motif protein 41 2 2
MIRT719069 ACOX1 acyl-CoA oxidase 1 2 2
MIRT724548 HAUS2 HAUS augmin like complex subunit 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-7107-5p Docetaxel 148124 NSC628503 approved resistant High Breast Cancer cell line (MDA-MB-231)
hsa-miR-7107-5p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-7107-5p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-7107-5p Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-7107-5p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-7107-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)

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