pre-miRNA Information
pre-miRNA hsa-mir-4477a   
Genomic Coordinates chr9: 41233755 - 41233835
Description Homo sapiens miR-4477a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4477a
Sequence 48| CUAUUAAGGACAUUUGUGAUUC |69
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1281813060 1 dbSNP
rs1352899679 1 dbSNP
rs1283566158 2 dbSNP
rs1236244724 4 dbSNP
rs75019967 4 dbSNP
rs1348124293 5 dbSNP
rs34026740 8 dbSNP
rs1288237115 9 dbSNP
rs71262206 10 dbSNP
rs1355759977 11 dbSNP
rs1300249508 16 dbSNP
rs1328879592 18 dbSNP
rs139133717 20 dbSNP
Putative Targets

Gene Information
Gene Symbol KBTBD6   
Synonyms -
Description kelch repeat and BTB domain containing 6
Transcript NM_152903   
Expression
Putative miRNA Targets on KBTBD6
3'UTR of KBTBD6
(miRNA target sites are highlighted)
>KBTBD6|NM_152903|3'UTR
   1 AATGCACAGGATCAACAGGGTTTGTTGTAACTAGATTGAAACACTAAGTTGTTTTTACTGTTTTGGAAAATATCTTAAAT
  81 ATCCTTTTTGTTCCTAAAGGAGAGGAAAAGTTGATTAACTTCTGGTTTGGTTTAGAAAAAGTAATGTTTGAAATACGAAG
 161 GTAATTTAATGTTACAAATTTTAACACTCAAATCAACCTTTTAATAATTTTCTGTGCTAAGGGTCCAGTATTTATTTGAT
 241 TATTTAGTATGTTTATGTTTCATGACACTAATTTAGTCTTTTGATACATTTTACATTCTGTTTACTGCCACAAGCACTGT
 321 GGCAATAACTTTTGAATTTTAATTTTTATAATAGAAAAATGATTAGGAATTGCTAGATAGTGTTTTGAAAGCATATCTTT
 401 TTCTTCAGAACAATGTAGACTTCCAAAATGGTTAACCTAAGGGGTCTTTACAAAATGTGTTATAAGTTAAACATAATTTG
 481 GGAAGTTTTACTTTTGTTTTCTTCTATGAAGAAAAAAATGCAGGCTGGGCGCGGTGGCTCACGCCTGTAATCCTAGCACT
 561 TTGGGAGGCCGAGGCAGGTGGATCACCTGAGGTCAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTA
 641 AAAATACAAAAATTAGCTGGGCGTGGTGGCATGCGCCTGTAATCCCAGCTACCCAGGAGGCTGAGGCAGGAGAATTGCTG
 721 AAACCCGGGAGTCAGAGGCTGCAGAGAGCCGAGACTGGGCCACTGCACTCCAGCCTGGATGACAGAGTGAGACTCCGTCT
 801 CAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAGAAAAAAAACCATATGTGTATTAGGGTGACTGAGTGGTGACTT
 881 CATTTATAATAATACAGAGAATAGCTATAAGCTCATTGACAGTAAAAACAACAAACCAGGATTCTACTGTTTGAAAAGAA
 961 GTTTCGTTTTAATTTTGGAATTTAGAATGTGTATTTGCAAAGTCACCAATTTTCATCTAAAAGGTTATATTCTAGTTGTG
1041 TCACCAAATCATCAAAAAACCTTAAAAAAGAAGTAACTTGCTTTGTAGGTTTGTATTGTTGATCTAAACCTGATACATGC
1121 TTCATTTAATCAGGAATAATCCTTTTTTTTCTGCTGGACATGTATAAATTTCACTGGATTGTATAAATTTTTATCTATTG
1201 CCTTAAACATTTACATGATTCTCAATATGTTTTAGCTGTACAGTTTTGGTGTTCATCTTAGAGGATTCTTCAGCAGAAGT
1281 GATATTTCTTTACTGTTTTGTGAGGTAATACTGATTTTGAAAATATATATAAGCTAAAAACAGTATTTCGTTGATATCAG
1361 TAGTCATTGTGTTAACTATAAAGTCAAGTGCCAGCAAAGAACTTTAAAACTGTAAAGCTGTGTATAGAACTGTTTTGTGT
1441 AGCATGGAAATATTCTGTCAGCTTTTTAAAGTCACTAAATGTTCTTGATTATCAGCTTGAAGGTATTTTTGTATTACAAG
1521 TTGACAGTTGCTGGGTGTAGTGGCTCATGCCTGTAATCCTAGCAACTCGGGGCTGAGGTGGGAGGATTGCTTCAGCCCAG
1601 GAGTTTGAGACCAGCCTGGGCAACATAGCAAAACCCCATCTCTACAAAAATAAAAAATATGTCTGGGCATGGTGGCCCAA
1681 GTCTGAGTCCCAGTTACTTGGGAGGATCACTTGAATGTAGGATCACTTGAGTCTAGGAGTTCGGGGCTGCAGCTATCATC
1761 TGCAGCTATAATCATAGCTCACTGCAGCTATGATCATGTCTCAGCACTCCAGCTTTGGCAACAGAACGAGATCCCATCTC
1841 TTAGAAAAACAAAGTTGATAGTTAAAGAACATAAGTGGATGATGGCATTTGAGGCCACTAGTGAAAGTATGTTTTCTCTA
1921 AAATATTTCTCTAATAGTGATATAAATGGCTATTTTATTATGATGTTTGTATGTGTTTTGTATTTCTCTGTAAACCATGC
2001 TCCAGTCTTTGTTTTTCTGTTACCATAATGTAAGAGAAGGTCCTGGAACAGAGACTAAATCCCACGAAACTGACATTGTT
2081 AAACACACTAAAACAGAAGTACTTACCTCTTGAAGATTTAATATATAATGGTTGACATGATACATGTACATGATGAATGA
2161 CCAGATGCTTATGGTCTACATTTTCCTTTATCCTGTTAGTATTACCTTCCTTAATCTTTGTTCATTAACATGCTAATTCC
2241 TCTTCAGTGTTTATTTTCTAGTGACAGAATGCTAACATTTCTTACACCCTGGCAGAAGGGAGAGAAATGTGTTTTGGGGT
2321 GGGTAACTAAATTTTTGAGTGAAATATCATAAGATGAGAATGGAAAGAGGGAGACACAAAGAGTTATAACAAAAAAACAA
2401 TGGTTTTTTTAGCCATTTGACTGGCTCTTTAAATAGTCTACAAGACATTCACGTTTAACATCACTTTTAGTGAAATAAAA
2481 TGTGCCATACTAGTATGTGCTTCAAAAGGGCAAATGTGCTTTAGTGCCCTAAGGCTAAATTTTGGTCATTTGACATCAGA
2561 GATGTTGTAAGTATTGCACTTAATACGCACCTATTTCTCAATAGTGTTATTTTTTGGCTAGCATTTTCTTTACCACTATC
2641 TTGTTGATAGCTTTTTGTTCTCTAAGGTTGAAACATGACAGTGCTTATCTCAAACAGATTACCCATCTGCAGAACTAAGG
2721 AAAGCAATTTATGTATGAAAGAAATTCTTGAATTCGTCATTCTCAACCTTTGAATTAAAGCTTAGACTAAATAGTAATAT
2801 ATCGTGGGAAGGATTTTGGTTTTGTGATATTTCTGTGAATTAAGGAATAGATGTTAACCATTATTTTGTAGAAAAGTGAT
2881 TTGTATGTGGTTAATTATAAATAAAACTGGTACC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cuUAGUGUUUACAG---GAAUUAUc 5'
            :|:::||:| |:   ||||||| 
Target 5' atGTTGTAAGTATTGCACTTAATAc 3'
2562 - 2586 156.00 -5.50
2
miRNA  3' cuUAGUG-UUUACAGGAAUUAuc 5'
            :|||| ||||||:|||:||  
Target 5' aaGTCACTAAATGTTCTTGATta 3'
1469 - 1491 148.00 -18.70
3
miRNA  3' cuUAGU-GUUUACAGGAAUUAUc 5'
            |||| ||||   |||||| | 
Target 5' aaATCATCAAAAAACCTTAAAAa 3'
1046 - 1068 136.00 -8.82
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30180405 10 COSMIC
COSN8587583 46 COSMIC
COSN30110021 47 COSMIC
COSN30508745 66 COSMIC
COSN30111123 98 COSMIC
COSN1158472 124 COSMIC
COSN1080901 157 COSMIC
COSN8129534 416 COSMIC
COSN1158471 496 COSMIC
COSN28202041 824 COSMIC
COSN7401688 1081 COSMIC
COSN31539902 1216 COSMIC
COSN23154101 2012 COSMIC
COSN6229199 2380 COSMIC
COSN8592164 2628 COSMIC
COSN9746599 2628 COSMIC
COSN1609682 2749 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs925367335 5 dbSNP
rs1214882231 7 dbSNP
rs1310095832 8 dbSNP
rs1341215921 10 dbSNP
rs758849529 12 dbSNP
rs980620056 18 dbSNP
rs969247833 23 dbSNP
rs752901799 24 dbSNP
rs1371063387 25 dbSNP
rs779310444 27 dbSNP
rs755037173 31 dbSNP
rs1452524934 41 dbSNP
rs1398809417 46 dbSNP
rs753840584 50 dbSNP
rs572184493 52 dbSNP
rs1246113180 54 dbSNP
rs747037725 61 dbSNP
rs1013536137 64 dbSNP
rs1024147758 82 dbSNP
rs951291151 83 dbSNP
rs1025287026 85 dbSNP
rs1282078588 90 dbSNP
rs1178647897 97 dbSNP
rs995586049 100 dbSNP
rs188355025 101 dbSNP
rs1468240746 112 dbSNP
rs960737761 119 dbSNP
rs541876155 133 dbSNP
rs186354848 140 dbSNP
rs148227219 141 dbSNP
rs968384718 141 dbSNP
rs556151277 146 dbSNP
rs182018655 156 dbSNP
rs576956897 157 dbSNP
rs1164079483 163 dbSNP
rs554505812 168 dbSNP
rs1337632237 169 dbSNP
rs1440169492 171 dbSNP
rs900239611 180 dbSNP
rs1357397464 197 dbSNP
rs1040136175 204 dbSNP
rs1271667917 205 dbSNP
rs778280667 209 dbSNP
rs1007679597 212 dbSNP
rs1199850466 218 dbSNP
rs889307166 219 dbSNP
rs1240629219 227 dbSNP
rs886133065 232 dbSNP
rs1411634989 233 dbSNP
rs1237682197 239 dbSNP
rs1047395685 242 dbSNP
rs1160586325 245 dbSNP
rs1185446942 246 dbSNP
rs1470629344 250 dbSNP
rs1251614044 262 dbSNP
rs1466029530 283 dbSNP
rs1051953376 288 dbSNP
rs933549531 300 dbSNP
rs1224523939 309 dbSNP
rs914157869 312 dbSNP
rs1328290916 313 dbSNP
rs1341225904 316 dbSNP
rs1416893625 322 dbSNP
rs758941051 323 dbSNP
rs534256230 325 dbSNP
rs1320595472 328 dbSNP
rs1219677212 351 dbSNP
rs1253593201 352 dbSNP
rs1338082144 360 dbSNP
rs1194678459 362 dbSNP
rs948248722 380 dbSNP
rs1287127078 381 dbSNP
rs936701879 383 dbSNP
rs1486425428 387 dbSNP
rs1208307388 392 dbSNP
rs1256424403 393 dbSNP
rs1478007013 395 dbSNP
rs1225172669 413 dbSNP
rs1371214747 417 dbSNP
rs1475047654 428 dbSNP
rs1167370929 443 dbSNP
rs1403035113 446 dbSNP
rs1436716329 458 dbSNP
rs1311258256 473 dbSNP
rs925386258 480 dbSNP
rs1329394600 487 dbSNP
rs544135764 503 dbSNP
rs916650907 505 dbSNP
rs1298202714 506 dbSNP
rs1325128609 515 dbSNP
rs1274872791 519 dbSNP
rs992283001 519 dbSNP
rs1226371396 521 dbSNP
rs960688167 522 dbSNP
rs923903047 530 dbSNP
rs1347098247 531 dbSNP
rs981285519 532 dbSNP
rs967965636 536 dbSNP
rs969195208 538 dbSNP
rs1379342006 540 dbSNP
rs1455639248 542 dbSNP
rs917727191 543 dbSNP
rs868728222 552 dbSNP
rs868061907 553 dbSNP
rs1394645325 554 dbSNP
rs996007570 556 dbSNP
rs1348274350 559 dbSNP
rs1290957187 567 dbSNP
rs189936896 570 dbSNP
rs951239358 571 dbSNP
rs1324743649 573 dbSNP
rs1373913015 585 dbSNP
rs1025992553 599 dbSNP
rs1157149956 607 dbSNP
rs548517245 609 dbSNP
rs1353927631 628 dbSNP
rs1240776205 630 dbSNP
rs371763483 631 dbSNP
rs55934470 635 dbSNP
rs1006624455 638 dbSNP
rs890889764 646 dbSNP
rs1952591 661 dbSNP
rs1217270064 662 dbSNP
rs1464918560 663 dbSNP
rs746231966 666 dbSNP
rs552292581 674 dbSNP
rs1252482222 681 dbSNP
rs892710464 682 dbSNP
rs1161524325 684 dbSNP
rs1206366474 685 dbSNP
rs1053155517 693 dbSNP
rs1453487704 694 dbSNP
rs936665578 695 dbSNP
rs1301709190 696 dbSNP
rs903880059 699 dbSNP
rs1045101109 719 dbSNP
rs1218629577 725 dbSNP
rs538782589 726 dbSNP
rs1304409283 727 dbSNP
rs377132122 727 dbSNP
rs560143594 728 dbSNP
rs555320886 731 dbSNP
rs1274820035 733 dbSNP
rs1332538459 740 dbSNP
rs1213013441 742 dbSNP
rs535486783 743 dbSNP
rs185451664 750 dbSNP
rs918507841 751 dbSNP
rs1387920753 759 dbSNP
rs1418732592 763 dbSNP
rs974421984 766 dbSNP
rs1420505279 769 dbSNP
rs998759074 776 dbSNP
rs1164801027 777 dbSNP
rs1355698255 790 dbSNP
rs1463059242 792 dbSNP
rs1295960608 796 dbSNP
rs1471075593 797 dbSNP
rs566950800 798 dbSNP
rs1396279211 803 dbSNP
rs1294844198 805 dbSNP
rs1407373547 805 dbSNP
rs1175767012 806 dbSNP
rs1431986481 818 dbSNP
rs1422301636 819 dbSNP
rs1187556907 820 dbSNP
rs1278756632 823 dbSNP
rs1187751403 824 dbSNP
rs1206639046 824 dbSNP
rs1259926886 824 dbSNP
rs1267901506 824 dbSNP
rs1309242782 824 dbSNP
rs1430814569 824 dbSNP
rs373319870 824 dbSNP
rs386378918 824 dbSNP
rs4053821 824 dbSNP
rs757433538 824 dbSNP
rs761972646 824 dbSNP
rs764368137 824 dbSNP
rs879020143 824 dbSNP
rs368966538 825 dbSNP
rs369424001 825 dbSNP
rs1353435734 826 dbSNP
rs1449550580 826 dbSNP
rs1246879773 827 dbSNP
rs1206501640 828 dbSNP
rs1462364165 829 dbSNP
rs1434850103 831 dbSNP
rs9566702 833 dbSNP
rs1217628137 838 dbSNP
rs1314298770 838 dbSNP
rs1363901601 838 dbSNP
rs1373310928 838 dbSNP
rs369641271 838 dbSNP
rs1256412918 840 dbSNP
rs1209206234 842 dbSNP
rs1294835005 842 dbSNP
rs1235207434 843 dbSNP
rs76868737 846 dbSNP
rs1484822256 847 dbSNP
rs916783399 847 dbSNP
rs78802673 848 dbSNP
rs1056653471 849 dbSNP
rs1210533040 851 dbSNP
rs561893252 874 dbSNP
rs541665351 878 dbSNP
rs957602383 880 dbSNP
rs1419473645 886 dbSNP
rs1018330236 896 dbSNP
rs755307017 907 dbSNP
rs924038946 918 dbSNP
rs978056289 921 dbSNP
rs114564008 924 dbSNP
rs955090073 925 dbSNP
rs1364628726 929 dbSNP
rs1346724873 939 dbSNP
rs1295479165 941 dbSNP
rs1454826662 943 dbSNP
rs181270160 947 dbSNP
rs1305725392 948 dbSNP
rs997636942 949 dbSNP
rs1233875237 958 dbSNP
rs892648731 960 dbSNP
rs1285276177 965 dbSNP
rs546916383 966 dbSNP
rs1356575631 977 dbSNP
rs1242031726 980 dbSNP
rs1469312142 981 dbSNP
rs767229471 987 dbSNP
rs1250630519 1005 dbSNP
rs1453368273 1008 dbSNP
rs545970598 1019 dbSNP
rs576889451 1023 dbSNP
rs1001494249 1038 dbSNP
rs1398729603 1041 dbSNP
rs755147932 1060 dbSNP
rs1389071809 1062 dbSNP
rs1327953448 1070 dbSNP
rs764601112 1070 dbSNP
rs1368844361 1073 dbSNP
rs904122645 1074 dbSNP
rs1435897680 1077 dbSNP
rs1186093998 1081 dbSNP
rs1045049501 1083 dbSNP
rs1280353767 1085 dbSNP
rs1375874881 1089 dbSNP
rs1222361478 1114 dbSNP
rs1284008598 1117 dbSNP
rs1445882081 1119 dbSNP
rs1216118491 1124 dbSNP
rs1467639335 1132 dbSNP
rs572864046 1132 dbSNP
rs1181982888 1135 dbSNP
rs189671517 1136 dbSNP
rs372305994 1141 dbSNP
rs761440658 1144 dbSNP
rs1180858263 1148 dbSNP
rs1017176954 1151 dbSNP
rs1482153525 1151 dbSNP
rs1234387161 1153 dbSNP
rs1205854158 1154 dbSNP
rs1056603753 1156 dbSNP
rs1272622429 1157 dbSNP
rs929808101 1158 dbSNP
rs918446188 1161 dbSNP
rs1329638200 1168 dbSNP
rs1322347060 1176 dbSNP
rs973948752 1180 dbSNP
rs1440327237 1186 dbSNP
rs941253007 1197 dbSNP
rs1288059668 1220 dbSNP
rs1356476287 1225 dbSNP
rs184024730 1227 dbSNP
rs571557303 1229 dbSNP
rs1356281616 1230 dbSNP
rs1056620938 1237 dbSNP
rs985081561 1238 dbSNP
rs191162727 1240 dbSNP
rs1203351323 1242 dbSNP
rs1257833658 1248 dbSNP
rs1476061810 1249 dbSNP
rs902584253 1250 dbSNP
rs1165972001 1300 dbSNP
rs1475700527 1301 dbSNP
rs1168523639 1302 dbSNP
rs866422563 1308 dbSNP
rs1368467722 1311 dbSNP
rs1307654496 1317 dbSNP
rs538044700 1322 dbSNP
rs988548911 1326 dbSNP
rs955827501 1327 dbSNP
rs1311448904 1329 dbSNP
rs1340356620 1330 dbSNP
rs1163715651 1331 dbSNP
rs946732824 1332 dbSNP
rs368655877 1348 dbSNP
rs756201967 1349 dbSNP
rs763677234 1350 dbSNP
rs1227113370 1357 dbSNP
rs1280578080 1360 dbSNP
rs1001045150 1365 dbSNP
rs539463249 1371 dbSNP
rs1482582631 1372 dbSNP
rs943258572 1378 dbSNP
rs552230950 1387 dbSNP
rs1195209485 1390 dbSNP
rs1371304807 1392 dbSNP
rs987252748 1394 dbSNP
rs538782994 1397 dbSNP
rs186748139 1410 dbSNP
rs775492434 1421 dbSNP
rs546701843 1427 dbSNP
rs1401918951 1428 dbSNP
rs1383170602 1431 dbSNP
rs1056551705 1433 dbSNP
rs973594125 1435 dbSNP
rs368391765 1444 dbSNP
rs994632522 1449 dbSNP
rs1349550892 1454 dbSNP
rs1012600750 1463 dbSNP
rs1351088163 1471 dbSNP
rs753825030 1471 dbSNP
rs1206737057 1473 dbSNP
rs1259505499 1477 dbSNP
rs897258113 1480 dbSNP
rs1464390763 1488 dbSNP
rs1038575426 1490 dbSNP
rs1187959385 1491 dbSNP
rs9594488 1502 dbSNP
rs1253732897 1505 dbSNP
rs527535813 1513 dbSNP
rs895369624 1517 dbSNP
rs1348951475 1519 dbSNP
rs1305489483 1534 dbSNP
rs1387852721 1548 dbSNP
rs1377352724 1549 dbSNP
rs1454616094 1550 dbSNP
rs184644685 1562 dbSNP
rs911132724 1568 dbSNP
rs41286991 1569 dbSNP
rs1372510313 1573 dbSNP
rs1438129736 1577 dbSNP
rs1300158514 1579 dbSNP
rs1042571232 1582 dbSNP
rs1456101904 1586 dbSNP
rs146784534 1589 dbSNP
rs1258775197 1594 dbSNP
rs1328334228 1596 dbSNP
rs531534133 1612 dbSNP
rs1275019923 1615 dbSNP
rs1413757724 1626 dbSNP
rs1189601879 1634 dbSNP
rs1266867547 1635 dbSNP
rs1049654041 1636 dbSNP
rs569483737 1638 dbSNP
rs933645456 1640 dbSNP
rs1472496250 1642 dbSNP
rs764945464 1647 dbSNP
rs759317759 1650 dbSNP
rs1459364099 1658 dbSNP
rs1292439710 1659 dbSNP
rs113669080 1661 dbSNP
rs776736811 1668 dbSNP
rs1396723274 1671 dbSNP
rs1392795705 1674 dbSNP
rs925734654 1682 dbSNP
rs1349622486 1684 dbSNP
rs980002096 1698 dbSNP
rs1233747834 1703 dbSNP
rs562703839 1719 dbSNP
rs1208169400 1721 dbSNP
rs1486864237 1722 dbSNP
rs1264966826 1726 dbSNP
rs1023875727 1730 dbSNP
rs1197752494 1731 dbSNP
rs1249939519 1733 dbSNP
rs1482930344 1742 dbSNP
rs1189163845 1743 dbSNP
rs1420572492 1755 dbSNP
rs1269028209 1758 dbSNP
rs1012535039 1783 dbSNP
rs1208267010 1790 dbSNP
rs1327603540 1792 dbSNP
rs1463108727 1795 dbSNP
rs1305793844 1796 dbSNP
rs1369626811 1806 dbSNP
rs1314491695 1809 dbSNP
rs987388553 1810 dbSNP
rs1285563920 1817 dbSNP
rs1234660365 1827 dbSNP
rs929133236 1828 dbSNP
rs1330998873 1836 dbSNP
rs1308121208 1847 dbSNP
rs960962429 1850 dbSNP
rs1034996395 1852 dbSNP
rs376081538 1871 dbSNP
rs34635680 1876 dbSNP
rs1260081316 1884 dbSNP
rs1482509966 1887 dbSNP
rs545878523 1929 dbSNP
rs973263265 1933 dbSNP
rs1263133944 1940 dbSNP
rs1429763236 1943 dbSNP
rs372640309 1951 dbSNP
rs897222496 1958 dbSNP
rs1038491753 1960 dbSNP
rs750530944 1962 dbSNP
rs1005776946 1968 dbSNP
rs1390128011 1971 dbSNP
rs1389096265 1975 dbSNP
rs1434980341 1990 dbSNP
rs1175223127 2003 dbSNP
rs889642890 2004 dbSNP
rs915674352 2006 dbSNP
rs959715358 2011 dbSNP
rs991547414 2011 dbSNP
rs1035265768 2025 dbSNP
rs1320892380 2030 dbSNP
rs1341664884 2038 dbSNP
rs771097683 2065 dbSNP
rs532264557 2066 dbSNP
rs1386250449 2076 dbSNP
rs966956162 2088 dbSNP
rs747199000 2098 dbSNP
rs74047613 2109 dbSNP
rs1466328342 2112 dbSNP
rs1186077236 2114 dbSNP
rs1011088596 2115 dbSNP
rs1454370052 2118 dbSNP
rs1195079055 2123 dbSNP
rs893870030 2127 dbSNP
rs1039142691 2128 dbSNP
rs1007512939 2130 dbSNP
rs1346855322 2136 dbSNP
rs1455598622 2138 dbSNP
rs1319864710 2139 dbSNP
rs1364509175 2144 dbSNP
rs539855086 2153 dbSNP
rs922523855 2157 dbSNP
rs574413618 2163 dbSNP
rs890490418 2177 dbSNP
rs1365775656 2181 dbSNP
rs1451418505 2203 dbSNP
rs1218940276 2205 dbSNP
rs1248714827 2206 dbSNP
rs1319198569 2209 dbSNP
rs1207358377 2215 dbSNP
rs1268091731 2227 dbSNP
rs1053166528 2232 dbSNP
rs1468535902 2263 dbSNP
rs934378599 2265 dbSNP
rs557762595 2278 dbSNP
rs1244562160 2285 dbSNP
rs1477493691 2304 dbSNP
rs1463692498 2307 dbSNP
rs1177521680 2311 dbSNP
rs925691467 2317 dbSNP
rs1201417813 2319 dbSNP
rs978558468 2323 dbSNP
rs1158331555 2325 dbSNP
rs1344692836 2329 dbSNP
rs968197701 2344 dbSNP
rs1325617188 2348 dbSNP
rs916723975 2349 dbSNP
rs1436052769 2351 dbSNP
rs554959798 2364 dbSNP
rs1037908070 2371 dbSNP
rs768106619 2379 dbSNP
rs1227013659 2398 dbSNP
rs1366810554 2398 dbSNP
rs369808780 2399 dbSNP
rs1336124111 2401 dbSNP
rs193293295 2403 dbSNP
rs991273971 2411 dbSNP
rs1362628577 2418 dbSNP
rs1335730386 2439 dbSNP
rs928247706 2440 dbSNP
rs1481944990 2441 dbSNP
rs991005937 2447 dbSNP
rs1181209377 2453 dbSNP
rs1414841607 2456 dbSNP
rs1401154851 2460 dbSNP
rs1418407411 2468 dbSNP
rs188354553 2469 dbSNP
rs1431531833 2470 dbSNP
rs960910060 2474 dbSNP
rs1035303550 2485 dbSNP
rs1372701756 2487 dbSNP
rs1390917257 2496 dbSNP
rs994570423 2505 dbSNP
rs961421799 2512 dbSNP
rs958270394 2532 dbSNP
rs1282987598 2536 dbSNP
rs1355034284 2537 dbSNP
rs556039160 2539 dbSNP
rs1339646129 2550 dbSNP
rs1204132553 2564 dbSNP
rs772137971 2571 dbSNP
rs1005606116 2576 dbSNP
rs150231561 2578 dbSNP
rs1236898335 2581 dbSNP
rs140979337 2586 dbSNP
rs566630260 2587 dbSNP
rs370462645 2593 dbSNP
rs1428097326 2601 dbSNP
rs1168252231 2602 dbSNP
rs901090870 2609 dbSNP
rs536244038 2643 dbSNP
rs1053082374 2648 dbSNP
rs1051691227 2649 dbSNP
rs993470552 2651 dbSNP
rs1323415618 2657 dbSNP
rs1254496383 2660 dbSNP
rs1207982265 2663 dbSNP
rs373807319 2666 dbSNP
rs1343463690 2673 dbSNP
rs1362524145 2676 dbSNP
rs749625456 2678 dbSNP
rs183466251 2681 dbSNP
rs1280643374 2684 dbSNP
rs780536652 2687 dbSNP
rs764583070 2695 dbSNP
rs1198573153 2702 dbSNP
rs941853210 2707 dbSNP
rs41286989 2708 dbSNP
rs1398650095 2719 dbSNP
rs1189253509 2733 dbSNP
rs1250005261 2738 dbSNP
rs1285603461 2745 dbSNP
rs201270941 2747 dbSNP
rs191610680 2755 dbSNP
rs938390248 2756 dbSNP
rs115688769 2759 dbSNP
rs1402074241 2762 dbSNP
rs1411623706 2763 dbSNP
rs1323201220 2767 dbSNP
rs1226 2780 dbSNP
rs1385763458 2780 dbSNP
rs945756860 2788 dbSNP
rs1427918721 2792 dbSNP
rs1351250278 2794 dbSNP
rs1415966242 2794 dbSNP
rs1210479339 2803 dbSNP
rs1164110667 2804 dbSNP
rs549312517 2811 dbSNP
rs914137624 2822 dbSNP
rs990954922 2826 dbSNP
rs1435165576 2831 dbSNP
rs1197146530 2841 dbSNP
rs939537791 2851 dbSNP
rs1017687255 2860 dbSNP
rs928186637 2868 dbSNP
rs530191248 2887 dbSNP
rs532202847 2890 dbSNP
rs1184828326 2891 dbSNP
rs151099317 2897 dbSNP
rs1325999592 2899 dbSNP
rs1392380249 2901 dbSNP
rs1384737887 2902 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B HITS-CLIP data was present in Chi_ControlA_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control A HITS-CLIP data was present in Chi_ControlB_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_152903 | 3UTR | AUUUUCUGUGCUAAGGGUCCAGUAUUUAUUUGAUUAUUUAGUAUGUUUAUGUUUCAUGACACUAAUUUAGUCUUUUGAUACAUUUUACAUUCUGUUUACUGCCACAAGCACU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000379485.1 | 3UTR | GUAAGUAUUGCACUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000379485.1 | 3UTR | GUAAGUAUUGCACUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset Chi_ControlA_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control A
Location of target site ENST00000379485.1 | 3UTR | GUAAGUAUUGCACUUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset Chi_ControlB_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control B
Location of target site ENST00000379485.1 | 3UTR | GUAAGUAUUGCACUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-4477a Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055843 PLEKHA1 pleckstrin homology domain containing A1 2 10
MIRT061259 AMOTL1 angiomotin like 1 2 4
MIRT071895 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT076933 MLLT6 MLLT6, PHD finger containing 2 2
MIRT078652 ICT1 mitochondrial ribosomal protein L58 2 2
MIRT083633 PRNP prion protein 2 2
MIRT091629 RPL15 ribosomal protein L15 2 4
MIRT107076 PPP6C protein phosphatase 6 catalytic subunit 2 2
MIRT111191 TRIM33 tripartite motif containing 33 2 2
MIRT114515 ARF6 ADP ribosylation factor 6 2 2
MIRT175250 PSAT1 phosphoserine aminotransferase 1 2 4
MIRT175430 ACSL4 acyl-CoA synthetase long chain family member 4 2 2
MIRT178687 FAM102B family with sequence similarity 102 member B 2 2
MIRT189771 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT229450 RPL10 ribosomal protein L10 2 2
MIRT244899 PHF6 PHD finger protein 6 2 2
MIRT249189 AKIRIN1 akirin 1 2 8
MIRT261134 TRIM8 tripartite motif containing 8 2 2
MIRT275561 ZIC5 Zic family member 5 2 4
MIRT275652 ABHD13 abhydrolase domain containing 13 2 2
MIRT288082 UTP18 UTP18, small subunit processome component 2 2
MIRT303605 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT307924 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT316787 FOXC1 forkhead box C1 2 2
MIRT326910 SCML2 Scm polycomb group protein like 2 2 2
MIRT327713 SPIN4 spindlin family member 4 2 2
MIRT331632 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT342506 TMOD3 tropomodulin 3 2 4
MIRT354470 LRRC58 leucine rich repeat containing 58 2 2
MIRT378711 TRIM24 tripartite motif containing 24 2 2
MIRT407462 YDJC YdjC chitooligosaccharide deacetylase homolog 2 2
MIRT408226 SMAD5 SMAD family member 5 2 4
MIRT441824 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT442783 CHD8 chromodomain helicase DNA binding protein 8 2 2
MIRT443184 NHS NHS actin remodeling regulator 2 4
MIRT447615 CUL3 cullin 3 2 2
MIRT450156 DSEL dermatan sulfate epimerase-like 2 2
MIRT454801 NEDD9 neural precursor cell expressed, developmentally down-regulated 9 2 2
MIRT463050 ZNF644 zinc finger protein 644 2 2
MIRT467400 SOCS3 suppressor of cytokine signaling 3 2 2
MIRT468174 SGMS1 sphingomyelin synthase 1 2 2
MIRT468949 RPS14 ribosomal protein S14 2 6
MIRT469835 R3HDM4 R3H domain containing 4 2 2
MIRT470724 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT470902 PLIN3 perilipin 3 2 2
MIRT472467 NAPG NSF attachment protein gamma 2 12
MIRT472602 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT492350 SEMA7A semaphorin 7A (John Milton Hagen blood group) 2 2
MIRT493840 FOXN3 forkhead box N3 2 4
MIRT496318 DOCK9 dedicator of cytokinesis 9 2 2
MIRT500159 CLEC2D C-type lectin domain family 2 member D 2 8
MIRT500535 XPO4 exportin 4 2 4
MIRT503916 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT504003 SAT1 spermidine/spermine N1-acetyltransferase 1 2 4
MIRT505647 SHMT1 serine hydroxymethyltransferase 1 2 4
MIRT506574 MIER3 MIER family member 3 2 4
MIRT506945 HS3ST3B1 heparan sulfate-glucosamine 3-sulfotransferase 3B1 2 4
MIRT508196 RPS19 ribosomal protein S19 2 6
MIRT511417 HSPA13 heat shock protein family A (Hsp70) member 13 2 4
MIRT512326 ACTB actin beta 2 4
MIRT515376 RPL7 ribosomal protein L7 2 2
MIRT520422 TUBG1 tubulin gamma 1 2 4
MIRT524844 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT526320 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526561 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT528027 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT529874 RBM43 RNA binding motif protein 43 2 2
MIRT530826 CLEC4D C-type lectin domain family 4 member D 2 2
MIRT531334 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT532068 CCNB1 cyclin B1 2 4
MIRT532870 ZNF566 zinc finger protein 566 2 2
MIRT535580 NUP35 nucleoporin 35 2 2
MIRT537644 ERGIC2 ERGIC and golgi 2 2 4
MIRT537725 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT538894 BRI3BP BRI3 binding protein 2 2
MIRT538945 BMP2K BMP2 inducible kinase 2 2
MIRT540703 PDPK1 3-phosphoinositide dependent protein kinase 1 2 4
MIRT543210 TMEM117 transmembrane protein 117 2 3
MIRT543357 LYRM2 LYR motif containing 2 2 2
MIRT544905 CLSPN claspin 2 2
MIRT545532 ARF3 ADP ribosylation factor 3 2 2
MIRT546446 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT546882 PURB purine rich element binding protein B 2 4
MIRT547440 MED13 mediator complex subunit 13 2 2
MIRT548027 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548673 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 2
MIRT550435 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT551850 RPS3 ribosomal protein S3 2 2
MIRT556072 MRFAP1 Morf4 family associated protein 1 2 2
MIRT556554 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT557132 HOXA13 homeobox A13 2 2
MIRT557875 FEM1B fem-1 homolog B 2 4
MIRT558146 ELK4 ELK4, ETS transcription factor 2 2
MIRT558862 CD2AP CD2 associated protein 2 2
MIRT558884 CCNE1 cyclin E1 2 4
MIRT558907 CBX5 chromobox 5 2 2
MIRT559175 BRAP BRCA1 associated protein 2 2
MIRT560860 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561729 PPIF peptidylprolyl isomerase F 2 2
MIRT564024 CEBPB CCAAT/enhancer binding protein beta 2 2
MIRT564366 TRMT5 tRNA methyltransferase 5 2 2
MIRT564609 ZNF703 zinc finger protein 703 2 2
MIRT565494 AZF1 azoospermia factor 1 2 2
MIRT565577 SLC6A8 solute carrier family 6 member 8 2 2
MIRT566947 LEPROT leptin receptor overlapping transcript 2 2
MIRT567293 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT567308 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT568048 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT571807 PHF19 PHD finger protein 19 2 2
MIRT609234 RBM23 RNA binding motif protein 23 2 2
MIRT610328 SSX5 SSX family member 5 2 2
MIRT611428 UGT8 UDP glycosyltransferase 8 2 4
MIRT611709 SLFN13 schlafen family member 13 2 2
MIRT612069 CEP135 centrosomal protein 135 2 4
MIRT617676 JRKL JRK like 2 2
MIRT623684 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT635634 PRR15L proline rich 15 like 2 2
MIRT636422 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT637011 GPATCH11 G-patch domain containing 11 2 2
MIRT644150 C4orf3 chromosome 4 open reading frame 3 2 2
MIRT648562 MEMO1 mediator of cell motility 1 2 2
MIRT650752 WNT16 Wnt family member 16 2 2
MIRT651914 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT653556 SLC38A7 solute carrier family 38 member 7 2 2
MIRT692277 XRN2 5'-3' exoribonuclease 2 2 2
MIRT697650 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT703876 ERCC6 ERCC excision repair 6, chromatin remodeling factor 2 2
MIRT704615 CLIP1 CAP-Gly domain containing linker protein 1 2 2
MIRT708562 BBOX1 gamma-butyrobetaine hydroxylase 1 2 2
MIRT709614 KBTBD6 kelch repeat and BTB domain containing 6 2 2
MIRT712955 SGCD sarcoglycan delta 2 2
MIRT713502 DCAF17 DDB1 and CUL4 associated factor 17 2 2
MIRT720239 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT724255 GLUD1 glutamate dehydrogenase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4477a Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4477a Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4477a Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)

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