pre-miRNA Information
pre-miRNA hsa-mir-3915   
Genomic Coordinates chrX: 32583656 - 32583752
Description Homo sapiens miR-3915 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3915
Sequence 21| UUGAGGAAAAGAUGGUCUUAUU |42
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs997323565 10 dbSNP
rs1192161547 15 dbSNP
rs1255075246 19 dbSNP
rs1452812574 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol DFFB   
Synonyms CAD, CPAN, DFF-40, DFF2, DFF40
Description DNA fragmentation factor subunit beta
Transcript NM_004402   
Expression
Putative miRNA Targets on DFFB
3'UTR of DFFB
(miRNA target sites are highlighted)
>DFFB|NM_004402|3'UTR
   1 CACGTACACACCACGTCCTGGTCTTTGTTTGAGGCCTGACGTGGGCATCATTTTAACAGGTGCCTTTTTTGTTTTTTTGT
  81 TTTTCGTTTTTTTGGTCACTCCAGTAGCTCCTGGAAAAAACCTTAAAAAATGTTTCCTCCAAATCTGATTTCATTACATT
 161 TCTGAATTGTTGGGGTTTTTTTTGTTGTTTTGTTTTGTTTTGTAGATGGAGTTTCACTTTTGTTGCCCAGGCTGGAGTGT
 241 AGTGGCGCGATCTCGGCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGTGCCACCACGCCCGGCTAATGTTTGTATTT
 321 TTAGTAGAGACGGGGTTTCACCATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGCCCACCTCAGCCTC
 401 CCAAAGTGCTGGGATGACAGGTGTGAGCCACTGCGCCCAGCCTGAATCATTTCTTATACCTTCTGACAGCCCAACTTCCA
 481 GAGGACAGCTCTGGGGTACTCGTTGGATGTCTGTGAGTACCTGGTCATACGGGTCAGTAGGGATAAGAATTGTCTCTGGG
 561 CTGAGGAATTCTTCTGTTCTCTGGTTTCACCAGCGTTGGGTTTGCTCATGTAATGTGGTCACCATACTCAAATGGTGTCA
 641 TGGCTGAAGTTGGCCACCTTGCTTGAGGGACAAGTTGTTTATGTATCAGCTCTCTGCTGGGTCTCCCTTTCCATGGCAAA
 721 TGGGCAGCTCCATCCTCTTGACTCTTCTAAATGCCCAAAAGAGGTGTCATGCTTTGGGGGTACGATGTTTATACTCCGTA
 801 AAGAACATACAAGGACATTCACTGCTGATTTTTTTTTTTGTTTGTTTGAGACAGGGTCTCACTCTGTCGCTCAGGCTGGA
 881 GTGCAGTGATGCAATCTTGGCTCACTGCAACCTCCGCCTCTCAGGTTCAAGTGGTTCTCCTTCCTCAGCCTCCCAAGTAG
 961 CTGGGATTACAGGCACCTACCACCAGGGCCAGCTAATTTTTGTATGTTTAGTAGAAACGGGGTTTCACCATGTTGGCCAG
1041 GCTGTTCTCGAACTCCTGACCTCAGGTGATCTGCCCGCCTCGGTCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTG
1121 CACCTGACCTGCTGAATTGTTTATAATGGCAAGAAATAGGAAACCCCCCAATGTCTGTTGAACAGCTATCACGTTGAACC
1201 ACGTGAAACTGCTGTTTTCTAGGCCAAAAATGGTGAGCGATCATTTATTTCATGATTCAACCTGATACATTTACATAGTG
1281 CAAAACTGTGTCACAGTTTCAGGCTTTTATGAGGAAAGCGTTTCTGTGTAGAAACTGGAAGCTGTTCAGGGCATCGGCAG
1361 CTGAACCCTGCTCCGTTGGTCAGCGTTACTATCATCTCGGATCATATGGAGCTCATGTCAGCCGTGTGGGTGGCGGGTGC
1441 ACAGAGACGGTCTGGAAGGAAACACGCGGATCTGAACAGCAGTAATCCTGGGGGATACGGGGGTTGGGCTAGATTACAGA
1521 GGGCTCATTTTCTACGTCATGTATTTTATGATACTTGAATTTTTTGAAATGGGCATTTATTTTATAACATGTTAAAATGT
1601 ACTTTTTAAATTAAGTCATTTTGTAATATTTGAATTTTTACATTTGTTGTACAATCAGGAAAAGCAATAAAGATTTTTCA
1681 AAAATAGAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uuaUUCUGGUAGA-AAAGGAGUu 5'
             |||    |||  ||||||| 
Target 5' ttcAAGTGGTTCTCCTTCCTCAg 3'
926 - 948 147.00 -12.00
2
miRNA  3' uuAUUCUGGUAGAAAAGGAGuu 5'
            ||| |  | : |||||||  
Target 5' ctTAAAA--AATGTTTCCTCca 3'
122 - 141 132.00 -6.60
3
miRNA  3' uuauucUGGUAG--A---AAAGGAGUu 5'
                |||| |  |   ||| |||| 
Target 5' ggtttcACCAGCGTTGGGTTTGCTCAt 3'
583 - 609 118.00 -7.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26505637 4 COSMIC
COSN30192223 16 COSMIC
COSN31554504 16 COSMIC
COSN28759748 24 COSMIC
COSN31610138 43 COSMIC
COSN30132469 47 COSMIC
COSN30533904 64 COSMIC
COSN30528553 79 COSMIC
COSN30558009 94 COSMIC
COSN20395805 176 COSMIC
COSN22877952 188 COSMIC
COSN25491207 216 COSMIC
COSN5741038 488 COSMIC
COSN7218824 504 COSMIC
COSN26766176 857 COSMIC
COSN1444743 1530 COSMIC
COSN10048114 1596 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs201777970 4 dbSNP
rs774244061 5 dbSNP
rs375303772 8 dbSNP
rs1313827908 12 dbSNP
rs767400154 15 dbSNP
rs750373375 16 dbSNP
rs775398963 24 dbSNP
rs200852893 26 dbSNP
rs1210188832 34 dbSNP
rs765247916 35 dbSNP
rs752942295 36 dbSNP
rs1245769414 39 dbSNP
rs758579260 41 dbSNP
rs371236966 42 dbSNP
rs559180663 47 dbSNP
rs1260634848 48 dbSNP
rs1193641188 56 dbSNP
rs1426682103 59 dbSNP
rs1405712353 64 dbSNP
rs1174655106 65 dbSNP
rs1412987282 65 dbSNP
rs1454675195 65 dbSNP
rs913860789 66 dbSNP
rs1331229533 72 dbSNP
rs1386672064 77 dbSNP
rs190758342 78 dbSNP
rs965029323 86 dbSNP
rs1300568879 87 dbSNP
rs976045039 87 dbSNP
rs987462203 95 dbSNP
rs911965568 112 dbSNP
rs1266013540 115 dbSNP
rs1346827066 115 dbSNP
rs1464117594 115 dbSNP
rs181886097 116 dbSNP
rs554910891 121 dbSNP
rs908749656 122 dbSNP
rs574147961 123 dbSNP
rs1189960258 133 dbSNP
rs1425019213 140 dbSNP
rs1473221734 144 dbSNP
rs1161741361 145 dbSNP
rs539950493 148 dbSNP
rs943469793 150 dbSNP
rs940047274 153 dbSNP
rs1165802801 159 dbSNP
rs1351668639 165 dbSNP
rs1434334739 168 dbSNP
rs1215982893 172 dbSNP
rs1039175542 175 dbSNP
rs1166402282 175 dbSNP
rs906510194 175 dbSNP
rs1220131167 176 dbSNP
rs1291640051 176 dbSNP
rs1319573635 176 dbSNP
rs557201426 176 dbSNP
rs7555538 176 dbSNP
rs1232953059 177 dbSNP
rs930835970 179 dbSNP
rs1185062285 182 dbSNP
rs1250031947 185 dbSNP
rs1416179649 185 dbSNP
rs41301969 185 dbSNP
rs894384618 187 dbSNP
rs1437053021 188 dbSNP
rs886717830 190 dbSNP
rs1202909345 193 dbSNP
rs1271037622 202 dbSNP
rs1332860632 206 dbSNP
rs149045294 208 dbSNP
rs143154829 221 dbSNP
rs1428701538 224 dbSNP
rs1477136387 231 dbSNP
rs1285762143 232 dbSNP
rs559123602 236 dbSNP
rs1169900369 247 dbSNP
rs146888429 248 dbSNP
rs1343733243 249 dbSNP
rs1033480699 250 dbSNP
rs1273053246 255 dbSNP
rs957865200 256 dbSNP
rs1188600648 258 dbSNP
rs1239596951 260 dbSNP
rs998534325 262 dbSNP
rs1471926414 266 dbSNP
rs140704651 268 dbSNP
rs1390830354 272 dbSNP
rs1451462155 282 dbSNP
rs1020815029 284 dbSNP
rs965121343 284 dbSNP
rs1369826044 288 dbSNP
rs530180842 290 dbSNP
rs373339973 300 dbSNP
rs987469462 301 dbSNP
rs547136304 303 dbSNP
rs560594690 304 dbSNP
rs532521166 310 dbSNP
rs1366950222 312 dbSNP
rs552328758 315 dbSNP
rs769597896 316 dbSNP
rs1342002737 325 dbSNP
rs1201591241 329 dbSNP
rs975227994 331 dbSNP
rs1441086373 332 dbSNP
rs920723656 332 dbSNP
rs1209650514 333 dbSNP
rs569531184 343 dbSNP
rs559189338 344 dbSNP
rs1466445494 345 dbSNP
rs548335538 351 dbSNP
rs1047946049 355 dbSNP
rs984781735 357 dbSNP
rs1389641303 359 dbSNP
rs1432416162 375 dbSNP
rs568332613 385 dbSNP
rs533616576 386 dbSNP
rs1422778361 387 dbSNP
rs1413655175 393 dbSNP
rs1321017272 403 dbSNP
rs1390304120 403 dbSNP
rs1338489273 404 dbSNP
rs908676052 409 dbSNP
rs940183193 417 dbSNP
rs950293109 425 dbSNP
rs772971616 435 dbSNP
rs982302126 438 dbSNP
rs906192468 439 dbSNP
rs1001917205 450 dbSNP
rs928021872 458 dbSNP
rs553431694 460 dbSNP
rs1452307504 466 dbSNP
rs1055131119 467 dbSNP
rs893586401 475 dbSNP
rs1244874586 485 dbSNP
rs893804448 486 dbSNP
rs1159553739 496 dbSNP
rs1195571120 500 dbSNP
rs879869481 502 dbSNP
rs1020764332 508 dbSNP
rs1449241347 510 dbSNP
rs966573018 514 dbSNP
rs1454558962 528 dbSNP
rs1387954490 531 dbSNP
rs145869288 531 dbSNP
rs138425140 532 dbSNP
rs1404889156 534 dbSNP
rs1387493744 538 dbSNP
rs1425801656 539 dbSNP
rs1163548562 542 dbSNP
rs1331739263 543 dbSNP
rs1226762469 544 dbSNP
rs1387920329 545 dbSNP
rs965063984 546 dbSNP
rs998625953 547 dbSNP
rs974797154 552 dbSNP
rs920657108 556 dbSNP
rs1287832744 562 dbSNP
rs777531901 565 dbSNP
rs555886315 566 dbSNP
rs900910457 567 dbSNP
rs1253668238 568 dbSNP
rs1432463492 576 dbSNP
rs576279721 577 dbSNP
rs572838502 585 dbSNP
rs1368643582 595 dbSNP
rs530405568 596 dbSNP
rs1160886744 601 dbSNP
rs1383300901 606 dbSNP
rs1027949221 608 dbSNP
rs1245117147 619 dbSNP
rs950290270 624 dbSNP
rs1263665124 625 dbSNP
rs952490044 634 dbSNP
rs541795371 636 dbSNP
rs1247332236 643 dbSNP
rs984342063 644 dbSNP
rs1358868912 650 dbSNP
rs561845538 651 dbSNP
rs1046403458 654 dbSNP
rs113527121 668 dbSNP
rs1205760723 669 dbSNP
rs1276628664 675 dbSNP
rs532496663 675 dbSNP
rs927603161 690 dbSNP
rs1256611150 698 dbSNP
rs770772803 701 dbSNP
rs1285052710 715 dbSNP
rs937660547 722 dbSNP
rs76726236 726 dbSNP
rs961652986 727 dbSNP
rs1186940299 729 dbSNP
rs770832305 736 dbSNP
rs187389050 742 dbSNP
rs1445666081 761 dbSNP
rs1449592876 765 dbSNP
rs1372878910 770 dbSNP
rs1428400564 771 dbSNP
rs560530871 776 dbSNP
rs141020982 784 dbSNP
rs1397976513 791 dbSNP
rs1310911482 797 dbSNP
rs1167516632 798 dbSNP
rs150219235 799 dbSNP
rs1299923080 803 dbSNP
rs938072291 805 dbSNP
rs1455809830 808 dbSNP
rs1256360319 811 dbSNP
rs1158581420 815 dbSNP
rs1008763816 823 dbSNP
rs753130847 829 dbSNP
rs915219207 829 dbSNP
rs991322043 829 dbSNP
rs1383648165 833 dbSNP
rs1448200639 837 dbSNP
rs45603135 837 dbSNP
rs1338344807 841 dbSNP
rs1406515880 845 dbSNP
rs1451725603 849 dbSNP
rs112256614 851 dbSNP
rs138800314 852 dbSNP
rs1337394431 854 dbSNP
rs996555175 863 dbSNP
rs1027669836 869 dbSNP
rs548497844 870 dbSNP
rs983536450 876 dbSNP
rs907997589 886 dbSNP
rs1280166394 895 dbSNP
rs901003827 896 dbSNP
rs1328626592 901 dbSNP
rs996575098 909 dbSNP
rs369469080 916 dbSNP
rs568434439 918 dbSNP
rs937774108 920 dbSNP
rs1230708905 931 dbSNP
rs1262297023 933 dbSNP
rs1329413303 935 dbSNP
rs981662927 936 dbSNP
rs1015303337 938 dbSNP
rs1245635305 939 dbSNP
rs1485288457 940 dbSNP
rs10909817 943 dbSNP
rs1435429269 947 dbSNP
rs937627261 949 dbSNP
rs764517990 950 dbSNP
rs1161694051 958 dbSNP
rs914917980 965 dbSNP
rs776905151 971 dbSNP
rs547592133 975 dbSNP
rs902286119 977 dbSNP
rs1369573098 978 dbSNP
rs915295062 981 dbSNP
rs1282397204 984 dbSNP
rs1009127588 987 dbSNP
rs1265799250 988 dbSNP
rs1316001307 989 dbSNP
rs1221573668 991 dbSNP
rs1266711485 997 dbSNP
rs1421346755 1003 dbSNP
rs1489745985 1004 dbSNP
rs1183206550 1005 dbSNP
rs1410543084 1007 dbSNP
rs1473149154 1008 dbSNP
rs1184813066 1009 dbSNP
rs191010288 1012 dbSNP
rs45463695 1016 dbSNP
rs1400358466 1017 dbSNP
rs1165559434 1019 dbSNP
rs556111920 1031 dbSNP
rs1351760363 1032 dbSNP
rs1422639203 1038 dbSNP
rs1429641888 1039 dbSNP
rs1465242186 1041 dbSNP
rs978053956 1045 dbSNP
rs923981174 1046 dbSNP
rs1286228873 1050 dbSNP
rs934539927 1051 dbSNP
rs1398400512 1064 dbSNP
rs1040949066 1066 dbSNP
rs1314245135 1069 dbSNP
rs571854323 1072 dbSNP
rs932495398 1073 dbSNP
rs575983822 1077 dbSNP
rs371191643 1078 dbSNP
rs533335921 1079 dbSNP
rs535457771 1082 dbSNP
rs1226720742 1086 dbSNP
rs1005344733 1090 dbSNP
rs1182707590 1091 dbSNP
rs1416025016 1108 dbSNP
rs1442807355 1111 dbSNP
rs1285275151 1120 dbSNP
rs1324465554 1122 dbSNP
rs1431565648 1127 dbSNP
rs182350316 1130 dbSNP
rs572381234 1144 dbSNP
rs1353776560 1150 dbSNP
rs1004922270 1153 dbSNP
rs11806014 1154 dbSNP
rs1481847836 1158 dbSNP
rs1244548427 1160 dbSNP
rs971531126 1164 dbSNP
rs1343486263 1168 dbSNP
rs1231343728 1186 dbSNP
rs1271284802 1191 dbSNP
rs1437664105 1193 dbSNP
rs1211296624 1194 dbSNP
rs981995428 1200 dbSNP
rs751013112 1203 dbSNP
rs1012815206 1204 dbSNP
rs1390925818 1210 dbSNP
rs1481786455 1217 dbSNP
rs57612726 1220 dbSNP
rs959180603 1225 dbSNP
rs75813733 1228 dbSNP
rs1451245186 1233 dbSNP
rs1166125488 1236 dbSNP
rs1418500424 1237 dbSNP
rs142911080 1239 dbSNP
rs1178002282 1240 dbSNP
rs914867233 1243 dbSNP
rs1451542615 1250 dbSNP
rs1320635980 1252 dbSNP
rs1366790937 1254 dbSNP
rs1433476898 1269 dbSNP
rs978148713 1270 dbSNP
rs1339346441 1275 dbSNP
rs1220113198 1277 dbSNP
rs946370486 1280 dbSNP
rs1281188574 1282 dbSNP
rs977748555 1291 dbSNP
rs1321652862 1296 dbSNP
rs1203345117 1302 dbSNP
rs1432190079 1304 dbSNP
rs114196787 1307 dbSNP
rs1191142974 1312 dbSNP
rs1374556892 1321 dbSNP
rs1478317403 1327 dbSNP
rs944483253 1328 dbSNP
rs966030273 1334 dbSNP
rs752377868 1336 dbSNP
rs1159509772 1345 dbSNP
rs900334725 1353 dbSNP
rs557683483 1356 dbSNP
rs187893180 1357 dbSNP
rs777612108 1358 dbSNP
rs575736255 1366 dbSNP
rs1304981304 1367 dbSNP
rs1344064942 1376 dbSNP
rs777020169 1377 dbSNP
rs541834829 1384 dbSNP
rs778731046 1385 dbSNP
rs569388384 1386 dbSNP
rs1452107306 1390 dbSNP
rs114676501 1399 dbSNP
rs374595988 1400 dbSNP
rs907253901 1401 dbSNP
rs1274380833 1417 dbSNP
rs753415988 1424 dbSNP
rs538439802 1425 dbSNP
rs1034894208 1434 dbSNP
rs958901784 1435 dbSNP
rs148456348 1436 dbSNP
rs990314512 1439 dbSNP
rs1189084727 1444 dbSNP
rs1012538107 1449 dbSNP
rs1022844299 1450 dbSNP
rs7537210 1453 dbSNP
rs967621097 1455 dbSNP
rs1237227011 1459 dbSNP
rs1279004201 1462 dbSNP
rs977697616 1465 dbSNP
rs923637842 1466 dbSNP
rs11806049 1467 dbSNP
rs775757225 1468 dbSNP
rs1253785965 1469 dbSNP
rs1416938438 1483 dbSNP
rs1180692061 1489 dbSNP
rs976481999 1492 dbSNP
rs533027123 1499 dbSNP
rs549585869 1500 dbSNP
rs191031774 1502 dbSNP
rs182606831 1503 dbSNP
rs1424597791 1505 dbSNP
rs1457522319 1512 dbSNP
rs1309001614 1515 dbSNP
rs41301971 1523 dbSNP
rs10909818 1524 dbSNP
rs887671203 1525 dbSNP
rs1436108325 1527 dbSNP
rs150546571 1536 dbSNP
rs1036739715 1537 dbSNP
rs1358630398 1550 dbSNP
rs1248772451 1553 dbSNP
rs918328358 1572 dbSNP
rs534956815 1574 dbSNP
rs939147705 1589 dbSNP
rs187292905 1591 dbSNP
rs1195027561 1595 dbSNP
rs894811360 1600 dbSNP
rs1462379744 1613 dbSNP
rs948268538 1615 dbSNP
rs1261985844 1619 dbSNP
rs1485961634 1623 dbSNP
rs1444554953 1624 dbSNP
rs1169838343 1631 dbSNP
rs1043996102 1633 dbSNP
rs1187573110 1647 dbSNP
rs1003327705 1650 dbSNP
rs577789247 1654 dbSNP
rs1034432654 1656 dbSNP
rs1446273875 1660 dbSNP
rs1454840199 1663 dbSNP
rs1382182916 1669 dbSNP
rs7551237 1669 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_ControlB_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uuaUUCUGGUAGA-AAAGGAGUu 5'
             |||    |||  ||||||| 
Target 5' ---AAGUGGUUCUCCUUCCUCAg 3'
1 - 20
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_004402 | 3UTR | UUCCUCAGCCUCCCAAGUAGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset Chi_ControlB_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control B
Location of target site ENST00000378209.3 | 3UTR | AAGUGGUUCUCCUUCCUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
111 hsa-miR-3915 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059544 PIP5K1A phosphatidylinositol-4-phosphate 5-kinase type 1 alpha 2 2
MIRT081703 ZNF507 zinc finger protein 507 2 2
MIRT083311 ZCCHC3 zinc finger CCHC-type containing 3 2 6
MIRT119046 SFT2D3 SFT2 domain containing 3 2 2
MIRT189381 TXLNA taxilin alpha 2 4
MIRT195895 C16ORF72 chromosome 16 open reading frame 72 2 6
MIRT223807 OXR1 oxidation resistance 1 2 2
MIRT292954 ZNF146 zinc finger protein 146 2 4
MIRT293949 RPL13A ribosomal protein L13a 2 6
MIRT300900 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT339332 SESN2 sestrin 2 2 2
MIRT349304 ZNF317 zinc finger protein 317 2 2
MIRT364736 TOR1B torsin family 1 member B 2 2
MIRT366233 VMA21 VMA21, vacuolar ATPase assembly factor 2 2
MIRT384605 CLIC4 chloride intracellular channel 4 2 2
MIRT401745 HLA-DRA major histocompatibility complex, class II, DR alpha 2 2
MIRT443169 UBL3 ubiquitin like 3 2 2
MIRT444215 METTL12 methyltransferase like 12 2 2
MIRT444375 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT445340 TCEANC transcription elongation factor A N-terminal and central domain containing 2 2
MIRT445474 KDM6A lysine demethylase 6A 2 2
MIRT445598 CAMK2N1 calcium/calmodulin dependent protein kinase II inhibitor 1 2 2
MIRT445630 TMEM50A transmembrane protein 50A 2 2
MIRT446012 VNN1 vanin 1 2 2
MIRT446115 ASTN1 astrotactin 1 2 2
MIRT446248 ELP2 elongator acetyltransferase complex subunit 2 2 2
MIRT446382 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT446940 ZMAT3 zinc finger matrin-type 3 2 2
MIRT446967 SLCO4C1 solute carrier organic anion transporter family member 4C1 2 2
MIRT447178 PGRMC2 progesterone receptor membrane component 2 2 2
MIRT447209 APBB2 amyloid beta precursor protein binding family B member 2 2 2
MIRT447237 IHH indian hedgehog 2 2
MIRT447807 EMX1 empty spiracles homeobox 1 2 2
MIRT447853 RRP8 ribosomal RNA processing 8 2 4
MIRT448054 MMP15 matrix metallopeptidase 15 2 2
MIRT448094 RASD2 RASD family member 2 2 2
MIRT448704 KLHL11 kelch like family member 11 2 2
MIRT448851 FEM1C fem-1 homolog C 2 2
MIRT449488 ZBTB4 zinc finger and BTB domain containing 4 2 2
MIRT449785 C1orf109 chromosome 1 open reading frame 109 2 2
MIRT450774 PDE3A phosphodiesterase 3A 2 2
MIRT451124 ZNF99 zinc finger protein 99 2 2
MIRT452676 GPR156 G protein-coupled receptor 156 2 2
MIRT452888 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT453188 ACSF2 acyl-CoA synthetase family member 2 2 2
MIRT453353 ZNF3 zinc finger protein 3 2 2
MIRT454502 ZFYVE27 zinc finger FYVE-type containing 27 2 2
MIRT454629 FAM83H family with sequence similarity 83 member H 2 2
MIRT455183 AGTRAP angiotensin II receptor associated protein 2 2
MIRT458204 FOXL2 forkhead box L2 2 2
MIRT458723 CES2 carboxylesterase 2 2 2
MIRT458942 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT460304 FLCN folliculin 2 2
MIRT460989 SYT7 synaptotagmin 7 2 2
MIRT461697 ZNF426 zinc finger protein 426 2 2
MIRT461903 NECAB3 N-terminal EF-hand calcium binding protein 3 2 2
MIRT462193 NDUFS1 NADH:ubiquinone oxidoreductase core subunit S1 2 2
MIRT462290 PPM1H protein phosphatase, Mg2+/Mn2+ dependent 1H 2 2
MIRT463795 XPOT exportin for tRNA 2 2
MIRT464649 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 4
MIRT465911 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 4
MIRT465992 TMEM189 transmembrane protein 189 2 4
MIRT466302 TIMM22 translocase of inner mitochondrial membrane 22 2 2
MIRT466575 TBC1D2B TBC1 domain family member 2B 2 2
MIRT470558 POU2F1 POU class 2 homeobox 1 2 2
MIRT471333 PERP PERP, TP53 apoptosis effector 2 2
MIRT471659 PALM2 paralemmin 2 2 2
MIRT472363 TSPAN1 tetraspanin 1 2 2
MIRT473468 MCFD2 multiple coagulation factor deficiency 2 2 2
MIRT474702 KIF3A kinesin family member 3A 2 2
MIRT476067 GRIN2A glutamate ionotropic receptor NMDA type subunit 2A 2 2
MIRT476077 GRB2 growth factor receptor bound protein 2 2 2
MIRT476423 GBA2 glucosylceramidase beta 2 2 2
MIRT476463 GATAD2B GATA zinc finger domain containing 2B 2 2
MIRT477877 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT478240 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT479460 CDK6 cyclin dependent kinase 6 2 2
MIRT481030 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT491496 HLA-DOA major histocompatibility complex, class II, DO alpha 2 2
MIRT497585 SLC23A1 solute carrier family 23 member 1 2 2
MIRT498542 TMEM30B transmembrane protein 30B 2 2
MIRT499263 NBPF11 NBPF member 11 2 2
MIRT504698 ZNF117 zinc finger protein 117 2 2
MIRT511288 KLHL15 kelch like family member 15 2 4
MIRT523121 HSP90B1 heat shock protein 90 beta family member 1 2 4
MIRT529601 H1F0 H1 histone family member 0 2 2
MIRT533481 TRIM71 tripartite motif containing 71 2 2
MIRT535571 NUP37 nucleoporin 37 2 4
MIRT537869 EDA2R ectodysplasin A2 receptor 2 2
MIRT538010 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT552681 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 4
MIRT554986 RAB39B RAB39B, member RAS oncogene family 2 2
MIRT556659 KMT2D lysine methyltransferase 2D 2 4
MIRT557437 GTPBP2 GTP binding protein 2 2 2
MIRT560813 CRTAP cartilage associated protein 2 2
MIRT562115 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT563103 IFRD2 interferon related developmental regulator 2 2 2
MIRT574199 LMNB1 lamin B1 2 2
MIRT623920 FMNL3 formin like 3 2 2
MIRT626551 NMNAT2 nicotinamide nucleotide adenylyltransferase 2 2 2
MIRT645458 ANKS6 ankyrin repeat and sterile alpha motif domain containing 6 2 2
MIRT649082 CACNA1B calcium voltage-gated channel subunit alpha1 B 2 2
MIRT659477 CLDN1 claudin 1 2 2
MIRT667950 HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 2 2
MIRT701981 MIER3 MIER family member 3 2 2
MIRT708694 TFDP2 transcription factor Dp-2 2 2
MIRT709649 DFFB DNA fragmentation factor subunit beta 2 2
MIRT710090 FAM229B family with sequence similarity 229 member B 2 2
MIRT718396 ALDH1A3 aldehyde dehydrogenase 1 family member A3 2 2
MIRT724972 TNS1 tensin 1 2 2
MIRT756050 HRH4 histamine receptor H4 2 1
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3915 Paclitaxel 36314 NSC125973 approved resistant High Prostate Cancer cell line (DU-145, PC-3)
hsa-miR-3915 Cisplatin + Decitabine sensitive High Non-Small Cell Lung Cancer cell line (A549)
hsa-mir-3915 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3915 Tripterygium wilfordii Hook F sensitive tissue
hsa-miR-3915 Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-3915 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3915 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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