pre-miRNA Information
pre-miRNA hsa-mir-412   
Genomic Coordinates chr14: 101065447 - 101065537
Synonyms MIRN412, hsa-mir-412, MIR412
Description Homo sapiens miR-412 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-412-3p
Sequence 54| ACUUCACCUGGUCCACUAGCCGU |76
Evidence Not_experimental
Experiments
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
rs61992671 18 GWAS
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs369997462 1 dbSNP
rs1439693090 7 dbSNP
rs1301668924 11 dbSNP
rs534204576 13 dbSNP
rs775386036 14 dbSNP
rs762832140 15 dbSNP
rs1203323285 16 dbSNP
rs61992671 18 dbSNP
rs1022012324 19 dbSNP
rs1207609936 20 dbSNP
rs139967426 21 dbSNP
rs539487075 22 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PDIK1L   
Synonyms CLIK1L, STK35L2
Description PDLIM1 interacting kinase 1 like
Transcript NM_152835   
Expression
Putative miRNA Targets on PDIK1L
3'UTR of PDIK1L
(miRNA target sites are highlighted)
>PDIK1L|NM_152835|3'UTR
   1 CACATATTATTTGCAAATACCATGGATGATATGCTGCTTCTGTTTAACAGTGATGCAACATTATGTGGCTGAAAAAGAAT
  81 ATAAAAAGCTAGACTCTACCCTCTAAGGGTTTAGATTTTTTGTGGGATTTTTTTTTTCCTCATTTTTCTTAAATCCAAGT
 161 TGGCCGTTTTATTAGTATGTTTCAAATGTGTATTACCAATGTGGGTGTAAATTTTTAAAAAATGATTATTGATAGAAGTT
 241 TGGCAGGAAAATTCTTTAAGAGCTAACAAGAGAAGAGAGTCCAGTTTTCTGGAAATATGTCTTTAAGTATTTTAGACATT
 321 CCTCGTCAGTATTAGGAATTTCCATGGGAAAAGAGGTTTGCATGCTGGTAATGCAACCTTTGAAACTTTGTAAAGGAAAC
 401 ATATATGTATATATTTATGTATATGTAAGTATGTGAATGTGCGCATTTTGCATTCCATATGAAAAAAATGCCACGTCTGT
 481 TTAAATTATTTGATGTAGGTTTGGGTTTTTGAGATTTGCTGGTGAAGTCAGTGACGAAAAATAAACCTTCCCTTATCTTC
 561 CTACTCTGCCCCTCCCCCTAATGAAATCATATTAAGTTGTTTTTTTTTTTTTTTGTAATATACAGCTTTTTTTTTAAGGC
 641 ATCATTTTCGAGGGTCTAAAATTATCTGGTAAAACAAATGAAATTAAGTGATCCAAAGCTGCTGAAGTATGTTTGAACTC
 721 TCCAGTGCCCTATAGCTGCAAGAGTTGAATTAGTCATGCAGTCATATGGCAGCAGGTTGGTGATTCAGTCCGACCTTCTT
 801 TAGGTAACCGAGCATTTATTTAACCAACTATACCACTGCATTGGGACGTCTGCACTTGAGCTTCTACAATCTGATATAAA
 881 TCTGAATACAGGATTATTCTGTTTGAAAACTTTGCTATGTGTGAACTGTAATACTTGATACATTTTTGGTTTGAAGACTT
 961 TGTCTAAGCCTCATTATACTGAAGTTGAAGAAACCAAATGAGCTCCACCCTCACTTTGCCTGCCCTGATATGATCACTTG
1041 TTGAGTCACTGGAGTTCCTTTCATTTTGGCACTGATGCTGTTTTCTCTTGTCTGATTTGAAACAGTACTGGTAATAATAT
1121 GGTTGTTGAAAATGTGATCACCTTTATCTAAAGTGGGAGAAGATACATACACAGTATGGCAAATGGATAAAATATTGTGG
1201 CATCAACTACTTTTAAAGTAGAAAAGCTATCCATTTTATACAATCACTGATACAGTCTATGTCAAAAAACCAACAGACCA
1281 TTATTCCTCTTGAAGTTAGTTTGATTTTATCTTTGTATGGTTGTCTACAATTTGTTTTCCTGTAAATGCAGATAGTTAAA
1361 ATCTAAAGGATAGAATGCTTTCCTAAAACAGAACATTAGCCTTTAAGGTTAAATAGACTTTACATTGTATCTAAGTTAAT
1441 CTTTATAAAGCACTAGAATTTTTGGTCAAAAGTCAAAATAGTATTAGAATATTGAAATTATTGATAGCTTTCATAATCTC
1521 AGCTTTTTTGAACTTCCACAATTTTTGGAATATGTCATAATTTTTTTCCCTGTTTCAAATGTGTTCAGAGGAAATAGAAT
1601 GTAAAACATCACAAAAAAAATTGCAGTACATAAAATTTCTGGACTATGTTAGTTACTTGATCTGGAAGTTTAAAATTTGG
1681 ACTAAAAGGTTTTATTGAAATAAAGCCTCTTAAAATGAAAAATCATATACTTTTAACATCACTTTTAAGCTAATAAATAT
1761 AAGAATTCTTTTGGAAATTAGAGGTGGAAACACACTGGAACCTCATGATAATTGACCCTCTGGATCACCAGATTAGTTTA
1841 ATTTAACAGATATGTCCAAGGAAGTTGAGCTATAGGGAGTAAGAAAAAGCATCATGATAACGTCTAGTCAATAACATGGC
1921 ACTTCAGCAGAGATTCATAGATGATGGTATGCCCATGCATCATTTGCTCTTCAAATATCTATGTGCTTGGAGCCACAGTT
2001 TCCTAAGCGCATAGTTTTTGGTCCTGCCTCATGTAAAATAGTTAATGATTATCATTTACTTGGAAAGATTTTACCTGTGA
2081 AGTGAAATTCTTTCATTGGGGGTAAGGGTATGAGGTGATCAGGAAGTTTCTTCTGGAATTTTATCAAGTCCTTGTATTCT
2161 AAAATAGCCAAGCAAAATGATAGTAAATTCTTTGTCTTTGTTCTTTCAGTCAGAGGTATTTATTAAGTACCTACTGTGTG
2241 CTCAGCACTAAAGGTTTGTTGATAAAATGACAATTAAAAAATGGCATTTAGCCAAAGGCCTTTTCAGCCAGGAGTAAGAA
2321 AAGATGGTTAGTGATATTTGGAAATACCTGGATATTTGCTAGAGGAAAAATGAAAGCAAAACTTCGTACACAGTGCCTTG
2401 CCCATAATAGGTACTCAATAAGCAATTGTTCCTCATAGAGTCTTTTGCCATGATTTATGGTGTTTTTTGAAATTTGTCTT
2481 AATTGAAAAAAGACCAAATATTTCAAATGAGCTTATAGGCAGCTGTGGCCAGTGAAAATATGGGGTTGTACAGTTAGTTC
2561 CTAGAATGTTATTTTGCACTAGTTGTCACTTAGAAAGATGGGGTTCCTGTAGATTTTTTGGTGCTAAGGGATACTTTGTC
2641 ATTATGATGAAGTAAGTGTTAAGTGTCAGATAAATAGCACACAGAATAGTTCTTTCTGCTGGTCTGTTTTTTCTCTTCGT
2721 TGTTGTTGTTTTTAATTGTAAATTGTTATCAATCAAACTATTGTAGCAGCTACAAAGTAATTCACCAGCATGACAAAATG
2801 GTCAAAAAATAAGTCATCAGCACTTAAGAAATGAAAGCAACTTTTGAAATTTTCTGTTAAAATTGTCAAATATATTTTAT
2881 GAAGAATTTATAAAAGGGGAAAATGATTGTAATTTATTGTTCATGACTTTTTTTTTTAAATAAAGTGAGTTTCAACAAAA
2961 AAAAAACTGAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugCCGAUCAC-CUG---GUCCACUUCa 5'
            ||:|  || ||:   | ||||||| 
Target 5' tgGGTTTTTGAGATTTGCTGGTGAAGt 3'
502 - 528 153.00 -17.90
2
miRNA  3' ugCCGAUCACCUGGUCCACUuca 5'
            ||: || | |: ||||||   
Target 5' ggGGTAAGGGTATGAGGTGAtca 3'
2099 - 2121 125.00 -16.32
3
miRNA  3' ugccgaUCACCUGGU-----CCACUUCa 5'
                ||||  |||     | ||||| 
Target 5' aaattaAGTGATCCAAAGCTGCTGAAGt 3'
681 - 708 121.00 -10.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM8420050 1 COSMIC
COSN30478303 22 COSMIC
COSN30156851 28 COSMIC
COSN1079847 34 COSMIC
COSN31565119 137 COSMIC
COSN28864241 138 COSMIC
COSN29584849 138 COSMIC
COSN31485726 211 COSMIC
COSN28765971 260 COSMIC
COSN20094594 269 COSMIC
COSN28771230 270 COSMIC
COSN31567715 278 COSMIC
COSN26557089 391 COSMIC
COSN31551552 450 COSMIC
COSN31484266 558 COSMIC
COSN20090182 600 COSMIC
COSN20094597 615 COSMIC
COSN28920910 615 COSMIC
COSN5370458 831 COSMIC
COSN28804028 1034 COSMIC
COSN25976953 1058 COSMIC
COSN31571795 1211 COSMIC
COSN4902118 1232 COSMIC
COSN24944202 1430 COSMIC
COSN31515675 1482 COSMIC
COSN31534900 1497 COSMIC
COSN6032708 1830 COSMIC
COSN1102125 2222 COSMIC
COSN17500469 2371 COSMIC
COSN31523623 2469 COSMIC
COSN31577752 2512 COSMIC
COSN26639001 2549 COSMIC
COSN22648645 2608 COSMIC
COSN31513118 2700 COSMIC
COSN30173225 2751 COSMIC
COSN31566325 2795 COSMIC
COSN28982415 2938 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1429783941 4 dbSNP
rs1476668284 4 dbSNP
rs745827223 5 dbSNP
rs377268856 6 dbSNP
rs1463716620 8 dbSNP
rs775548871 8 dbSNP
rs373982178 9 dbSNP
rs763681318 13 dbSNP
rs776433344 14 dbSNP
rs1313627635 16 dbSNP
rs557249352 21 dbSNP
rs1398392189 23 dbSNP
rs1277921603 31 dbSNP
rs1363121152 32 dbSNP
rs765550280 37 dbSNP
rs750749843 40 dbSNP
rs574147146 41 dbSNP
rs770115589 43 dbSNP
rs77675351 55 dbSNP
rs561723427 57 dbSNP
rs1384061002 58 dbSNP
rs1278905370 72 dbSNP
rs1259973785 74 dbSNP
rs1317566936 85 dbSNP
rs940630246 90 dbSNP
rs954344364 98 dbSNP
rs987089221 109 dbSNP
rs1019946698 116 dbSNP
rs1254253449 118 dbSNP
rs1489308982 124 dbSNP
rs1036382184 126 dbSNP
rs1486800921 128 dbSNP
rs967135271 128 dbSNP
rs1201869012 138 dbSNP
rs1430200968 140 dbSNP
rs978948847 145 dbSNP
rs1477548200 149 dbSNP
rs140376386 155 dbSNP
rs1201161397 164 dbSNP
rs150405114 166 dbSNP
rs1050670206 167 dbSNP
rs199666459 176 dbSNP
rs917181993 189 dbSNP
rs1455784064 191 dbSNP
rs1407074152 197 dbSNP
rs1303411744 198 dbSNP
rs183539481 200 dbSNP
rs1398171734 206 dbSNP
rs1285441707 208 dbSNP
rs1339422630 212 dbSNP
rs1216300720 218 dbSNP
rs1040066660 225 dbSNP
rs902944082 230 dbSNP
rs1271428972 235 dbSNP
rs1298898247 242 dbSNP
rs998903769 247 dbSNP
rs1032707300 248 dbSNP
rs976418406 251 dbSNP
rs1217287526 255 dbSNP
rs773220883 257 dbSNP
rs1227689420 258 dbSNP
rs75786059 260 dbSNP
rs1477484597 266 dbSNP
rs3833547 268 dbSNP
rs772804197 268 dbSNP
rs79778025 270 dbSNP
rs1159806277 280 dbSNP
rs56325816 290 dbSNP
rs1360381432 291 dbSNP
rs1418016891 296 dbSNP
rs1305022127 298 dbSNP
rs529014964 299 dbSNP
rs1435992772 301 dbSNP
rs1273261030 302 dbSNP
rs1375286124 304 dbSNP
rs899290743 308 dbSNP
rs969508122 309 dbSNP
rs1351412737 313 dbSNP
rs1269927670 314 dbSNP
rs1488066640 318 dbSNP
rs996308773 319 dbSNP
rs1050587446 320 dbSNP
rs890703946 322 dbSNP
rs548770558 325 dbSNP
rs1163192673 326 dbSNP
rs774130994 330 dbSNP
rs1427002223 332 dbSNP
rs1164575290 340 dbSNP
rs1165117904 340 dbSNP
rs1414669414 341 dbSNP
rs565831767 343 dbSNP
rs1009127206 345 dbSNP
rs1019895503 349 dbSNP
rs1295860163 355 dbSNP
rs765456104 355 dbSNP
rs1319820993 361 dbSNP
rs1330407815 363 dbSNP
rs1374635173 385 dbSNP
rs1454481613 390 dbSNP
rs967463260 401 dbSNP
rs1355059415 406 dbSNP
rs534829110 412 dbSNP
rs1326514965 416 dbSNP
rs999925524 419 dbSNP
rs1282380534 420 dbSNP
rs1199718528 422 dbSNP
rs1361471908 424 dbSNP
rs1456690219 433 dbSNP
rs1190251956 439 dbSNP
rs557714599 443 dbSNP
rs753267615 444 dbSNP
rs1161531837 456 dbSNP
rs958533448 462 dbSNP
rs991315175 462 dbSNP
rs759028370 471 dbSNP
rs920631634 472 dbSNP
rs1285035313 475 dbSNP
rs571642381 476 dbSNP
rs971286879 480 dbSNP
rs1203626336 490 dbSNP
rs149561051 494 dbSNP
rs1445255944 507 dbSNP
rs1286521795 512 dbSNP
rs1271413041 521 dbSNP
rs1340790042 523 dbSNP
rs17257113 528 dbSNP
rs907845281 530 dbSNP
rs1186866942 536 dbSNP
rs1202475354 537 dbSNP
rs1280037163 538 dbSNP
rs940687418 542 dbSNP
rs910477749 543 dbSNP
rs1265389383 546 dbSNP
rs574258335 551 dbSNP
rs1193240720 554 dbSNP
rs866123616 565 dbSNP
rs1040203204 567 dbSNP
rs1412658879 579 dbSNP
rs890651666 579 dbSNP
rs1299921992 589 dbSNP
rs1009075174 592 dbSNP
rs1418187835 594 dbSNP
rs902913115 596 dbSNP
rs1275918804 597 dbSNP
rs1288175085 597 dbSNP
rs1159974585 599 dbSNP
rs1247417222 600 dbSNP
rs1406321271 600 dbSNP
rs1488663326 600 dbSNP
rs397939050 600 dbSNP
rs909680425 600 dbSNP
rs1385168828 601 dbSNP
rs550437899 603 dbSNP
rs1331585200 604 dbSNP
rs1042381149 605 dbSNP
rs1376891660 615 dbSNP
rs1384985881 615 dbSNP
rs941202497 616 dbSNP
rs1308363940 617 dbSNP
rs1374391010 618 dbSNP
rs1240868749 619 dbSNP
rs1281511577 620 dbSNP
rs1351636182 621 dbSNP
rs1200012528 624 dbSNP
rs1261322625 625 dbSNP
rs1320552600 627 dbSNP
rs1418635593 627 dbSNP
rs536793434 632 dbSNP
rs1392496193 638 dbSNP
rs1204874038 641 dbSNP
rs1218772475 644 dbSNP
rs1238065156 644 dbSNP
rs1330907590 647 dbSNP
rs111510117 650 dbSNP
rs1000277872 651 dbSNP
rs1032715461 655 dbSNP
rs1283937568 671 dbSNP
rs958443469 676 dbSNP
rs1184404906 677 dbSNP
rs998637836 682 dbSNP
rs144306137 687 dbSNP
rs892836754 693 dbSNP
rs1477487997 700 dbSNP
rs1170352325 711 dbSNP
rs1013004874 719 dbSNP
rs1449658761 720 dbSNP
rs1180274395 725 dbSNP
rs1380905824 738 dbSNP
rs1438985064 739 dbSNP
rs541157898 746 dbSNP
rs1156346329 748 dbSNP
rs1023851462 750 dbSNP
rs377618614 758 dbSNP
rs879089238 761 dbSNP
rs1330626367 764 dbSNP
rs1003682847 766 dbSNP
rs751724977 792 dbSNP
rs1397962278 793 dbSNP
rs982653805 794 dbSNP
rs1446739593 795 dbSNP
rs1015932052 801 dbSNP
rs1035214567 806 dbSNP
rs34757675 808 dbSNP
rs962421891 810 dbSNP
rs1265150302 811 dbSNP
rs17163586 815 dbSNP
rs1200359308 824 dbSNP
rs932054276 828 dbSNP
rs920586286 829 dbSNP
rs1457121233 831 dbSNP
rs986192794 838 dbSNP
rs1281539730 841 dbSNP
rs201684597 842 dbSNP
rs781498023 848 dbSNP
rs912038281 849 dbSNP
rs986097760 854 dbSNP
rs1366409850 856 dbSNP
rs944878569 864 dbSNP
rs1041939748 868 dbSNP
rs1197992734 872 dbSNP
rs910446694 874 dbSNP
rs1296966674 892 dbSNP
rs1381963638 900 dbSNP
rs1396735736 905 dbSNP
rs903427904 918 dbSNP
rs1353846962 928 dbSNP
rs1220725556 935 dbSNP
rs944639647 936 dbSNP
rs17163588 942 dbSNP
rs1202098480 943 dbSNP
rs1430922743 959 dbSNP
rs1480490685 962 dbSNP
rs1169314094 996 dbSNP
rs1421438138 1004 dbSNP
rs1180821612 1006 dbSNP
rs1253422605 1009 dbSNP
rs1478490477 1014 dbSNP
rs547736168 1022 dbSNP
rs760841266 1024 dbSNP
rs934395746 1033 dbSNP
rs17257120 1034 dbSNP
rs892880138 1035 dbSNP
rs1384828712 1038 dbSNP
rs529197824 1041 dbSNP
rs1466978917 1044 dbSNP
rs1012645978 1047 dbSNP
rs548756651 1049 dbSNP
rs754372430 1063 dbSNP
rs905429709 1064 dbSNP
rs906998209 1074 dbSNP
rs1004443976 1085 dbSNP
rs1405673439 1088 dbSNP
rs1015466141 1103 dbSNP
rs1312739640 1104 dbSNP
rs1306324798 1107 dbSNP
rs1003822027 1114 dbSNP
rs1278030937 1117 dbSNP
rs1252330514 1124 dbSNP
rs962928791 1131 dbSNP
rs139123768 1135 dbSNP
rs1035185109 1142 dbSNP
rs1484676915 1146 dbSNP
rs898027955 1151 dbSNP
rs749078917 1160 dbSNP
rs953398379 1163 dbSNP
rs1434073330 1168 dbSNP
rs986140498 1169 dbSNP
rs911985632 1172 dbSNP
rs994080350 1173 dbSNP
rs1027702930 1175 dbSNP
rs952247521 1177 dbSNP
rs1298870242 1180 dbSNP
rs1360185042 1192 dbSNP
rs1428850964 1193 dbSNP
rs768621648 1197 dbSNP
rs1295465525 1203 dbSNP
rs1270655400 1207 dbSNP
rs111876011 1214 dbSNP
rs370355765 1221 dbSNP
rs771447396 1232 dbSNP
rs571662470 1242 dbSNP
rs537409647 1255 dbSNP
rs1444741326 1260 dbSNP
rs936239769 1261 dbSNP
rs934469087 1278 dbSNP
rs1429707087 1289 dbSNP
rs1489012103 1290 dbSNP
rs1171097652 1299 dbSNP
rs1251741699 1310 dbSNP
rs772926190 1331 dbSNP
rs914297220 1335 dbSNP
rs1379795706 1340 dbSNP
rs766753765 1347 dbSNP
rs948478996 1351 dbSNP
rs948372954 1358 dbSNP
rs1350682675 1364 dbSNP
rs1165207432 1366 dbSNP
rs1435570029 1369 dbSNP
rs1045455764 1379 dbSNP
rs1044065733 1381 dbSNP
rs1308384408 1386 dbSNP
rs1347936610 1398 dbSNP
rs1229467239 1425 dbSNP
rs1425517626 1426 dbSNP
rs1290226850 1429 dbSNP
rs1320724416 1434 dbSNP
rs1213512173 1445 dbSNP
rs1271625411 1447 dbSNP
rs1459338087 1451 dbSNP
rs1179837405 1466 dbSNP
rs906908086 1467 dbSNP
rs939576798 1468 dbSNP
rs1232743903 1470 dbSNP
rs1468730580 1481 dbSNP
rs1183658309 1493 dbSNP
rs1414859775 1505 dbSNP
rs906948844 1512 dbSNP
rs1297755876 1531 dbSNP
rs1359955128 1536 dbSNP
rs1003989164 1542 dbSNP
rs550700153 1554 dbSNP
rs1465896020 1571 dbSNP
rs1330593639 1575 dbSNP
rs898074813 1579 dbSNP
rs993659539 1592 dbSNP
rs1296946794 1597 dbSNP
rs1340372003 1602 dbSNP
rs1231105089 1613 dbSNP
rs1244284455 1613 dbSNP
rs1184179335 1621 dbSNP
rs1320453499 1622 dbSNP
rs1199658790 1624 dbSNP
rs77943848 1647 dbSNP
rs995806743 1647 dbSNP
rs753829995 1648 dbSNP
rs1028200585 1654 dbSNP
rs1474894962 1657 dbSNP
rs1294395143 1663 dbSNP
rs1360545989 1681 dbSNP
rs1425962988 1690 dbSNP
rs1478061992 1693 dbSNP
rs191102428 1696 dbSNP
rs766114252 1710 dbSNP
rs953345843 1721 dbSNP
rs887856188 1723 dbSNP
rs1416069239 1726 dbSNP
rs1007508136 1739 dbSNP
rs1018942626 1741 dbSNP
rs1215450174 1746 dbSNP
rs966510143 1751 dbSNP
rs924746263 1752 dbSNP
rs977563285 1752 dbSNP
rs957562198 1753 dbSNP
rs990772313 1755 dbSNP
rs916155787 1760 dbSNP
rs1007635535 1762 dbSNP
rs1486576538 1764 dbSNP
rs1485390204 1765 dbSNP
rs1017549835 1769 dbSNP
rs1265685858 1784 dbSNP
rs536981341 1799 dbSNP
rs1045407115 1803 dbSNP
rs1255439492 1805 dbSNP
rs928313249 1806 dbSNP
rs1185252138 1807 dbSNP
rs1385646461 1833 dbSNP
rs939736646 1854 dbSNP
rs1418787377 1855 dbSNP
rs898284368 1870 dbSNP
rs759636126 1872 dbSNP
rs879180551 1877 dbSNP
rs1381338309 1882 dbSNP
rs1315734461 1894 dbSNP
rs1343605227 1894 dbSNP
rs995361197 1899 dbSNP
rs553585568 1902 dbSNP
rs147500862 1903 dbSNP
rs1347772150 1917 dbSNP
rs1008124552 1929 dbSNP
rs1018890405 1930 dbSNP
rs966087317 1933 dbSNP
rs1031563621 1945 dbSNP
rs956163228 1947 dbSNP
rs1204796585 1952 dbSNP
rs999323989 1959 dbSNP
rs1453116412 1963 dbSNP
rs1031762904 1968 dbSNP
rs957717781 1970 dbSNP
rs1451113675 1975 dbSNP
rs1452467242 1979 dbSNP
rs573482124 1982 dbSNP
rs1317700773 1985 dbSNP
rs1380405095 1987 dbSNP
rs1452365915 1999 dbSNP
rs140204082 2009 dbSNP
rs1392429849 2010 dbSNP
rs183256022 2012 dbSNP
rs1326966362 2025 dbSNP
rs914413453 2031 dbSNP
rs969793622 2032 dbSNP
rs970284463 2034 dbSNP
rs1312036521 2035 dbSNP
rs979884100 2036 dbSNP
rs1259245136 2037 dbSNP
rs1304485954 2039 dbSNP
rs1358712911 2042 dbSNP
rs1318322959 2064 dbSNP
rs1272354314 2065 dbSNP
rs763374895 2071 dbSNP
rs928377001 2075 dbSNP
rs1215972903 2082 dbSNP
rs1466935009 2086 dbSNP
rs557792986 2087 dbSNP
rs577669060 2097 dbSNP
rs543404315 2102 dbSNP
rs1179026476 2103 dbSNP
rs1037125576 2109 dbSNP
rs1037154980 2120 dbSNP
rs1438873108 2126 dbSNP
rs919491168 2133 dbSNP
rs764742771 2135 dbSNP
rs1460149173 2144 dbSNP
rs563176190 2145 dbSNP
rs1333955145 2148 dbSNP
rs1175242592 2152 dbSNP
rs919679172 2154 dbSNP
rs770020947 2158 dbSNP
rs1342302432 2159 dbSNP
rs1421102720 2174 dbSNP
rs1159996974 2181 dbSNP
rs1403626931 2184 dbSNP
rs1428689764 2189 dbSNP
rs542846748 2191 dbSNP
rs1161392084 2197 dbSNP
rs1049533383 2200 dbSNP
rs1339297309 2207 dbSNP
rs889646337 2208 dbSNP
rs1407452102 2217 dbSNP
rs1008073596 2220 dbSNP
rs757388876 2228 dbSNP
rs1415124777 2234 dbSNP
rs1474468672 2236 dbSNP
rs929578762 2238 dbSNP
rs1296809382 2246 dbSNP
rs1461948871 2253 dbSNP
rs1049212213 2270 dbSNP
rs573581768 2277 dbSNP
rs1375153793 2293 dbSNP
rs1040960734 2307 dbSNP
rs1415409294 2312 dbSNP
rs887979743 2325 dbSNP
rs901805327 2327 dbSNP
rs998856983 2335 dbSNP
rs1007687802 2348 dbSNP
rs1220287781 2352 dbSNP
rs1295987395 2362 dbSNP
rs1032128110 2384 dbSNP
rs1300080159 2385 dbSNP
rs1039053745 2386 dbSNP
rs901951509 2387 dbSNP
rs1011695979 2398 dbSNP
rs1457237509 2401 dbSNP
rs997444186 2402 dbSNP
rs1032118385 2404 dbSNP
rs1485715286 2405 dbSNP
rs1209520047 2417 dbSNP
rs1255030430 2418 dbSNP
rs1202265245 2419 dbSNP
rs1193886794 2420 dbSNP
rs955963882 2424 dbSNP
rs1345942165 2427 dbSNP
rs1023109106 2429 dbSNP
rs1168963566 2435 dbSNP
rs1428230391 2435 dbSNP
rs970232234 2437 dbSNP
rs1435482653 2439 dbSNP
rs1312331657 2443 dbSNP
rs981651076 2446 dbSNP
rs1402112110 2450 dbSNP
rs1011945831 2458 dbSNP
rs1021452447 2459 dbSNP
rs767428494 2460 dbSNP
rs979935060 2473 dbSNP
rs1380245157 2481 dbSNP
rs142952299 2487 dbSNP
rs569738420 2498 dbSNP
rs1178641916 2507 dbSNP
rs1232988960 2518 dbSNP
rs1277615343 2521 dbSNP
rs559244744 2529 dbSNP
rs959792903 2530 dbSNP
rs1409885968 2546 dbSNP
rs1485786600 2547 dbSNP
rs972424317 2553 dbSNP
rs1185133453 2554 dbSNP
rs1255503205 2579 dbSNP
rs1455058269 2588 dbSNP
rs1168885887 2589 dbSNP
rs1393370537 2599 dbSNP
rs919609637 2604 dbSNP
rs775785697 2610 dbSNP
rs1356642161 2612 dbSNP
rs918272819 2618 dbSNP
rs1302169397 2621 dbSNP
rs1451431158 2631 dbSNP
rs985190309 2638 dbSNP
rs929565380 2641 dbSNP
rs911034755 2642 dbSNP
rs1343227331 2654 dbSNP
rs1049741929 2666 dbSNP
rs909468840 2669 dbSNP
rs1283194228 2676 dbSNP
rs186813044 2681 dbSNP
rs1314746271 2688 dbSNP
rs1040888622 2689 dbSNP
rs1406284833 2693 dbSNP
rs943514685 2694 dbSNP
rs1469144567 2696 dbSNP
rs1193569851 2699 dbSNP
rs1251602167 2700 dbSNP
rs1471237160 2705 dbSNP
rs1177836227 2707 dbSNP
rs902423275 2707 dbSNP
rs1417522613 2709 dbSNP
rs1167122490 2719 dbSNP
rs1323889046 2719 dbSNP
rs1394962311 2719 dbSNP
rs935266273 2719 dbSNP
rs1402357034 2720 dbSNP
rs1442369894 2736 dbSNP
rs1053112349 2739 dbSNP
rs893138644 2741 dbSNP
rs1307882247 2745 dbSNP
rs1011643737 2750 dbSNP
rs528235265 2752 dbSNP
rs551292538 2756 dbSNP
rs756359892 2761 dbSNP
rs998031672 2762 dbSNP
rs565331987 2771 dbSNP
rs1271890443 2775 dbSNP
rs1440037141 2791 dbSNP
rs1205358428 2799 dbSNP
rs1232397394 2804 dbSNP
rs1036309755 2810 dbSNP
rs1190340275 2839 dbSNP
rs1418844455 2846 dbSNP
rs1474792859 2850 dbSNP
rs1489920528 2852 dbSNP
rs1053121776 2857 dbSNP
rs961632927 2858 dbSNP
rs1328038215 2883 dbSNP
rs1352269611 2900 dbSNP
rs1449499368 2903 dbSNP
rs891825147 2905 dbSNP
rs1475084870 2924 dbSNP
rs1026623681 2928 dbSNP
rs1215681324 2928 dbSNP
rs1233108675 2928 dbSNP
rs1341859531 2928 dbSNP
rs1354415065 2928 dbSNP
rs201344559 2928 dbSNP
rs1436219199 2938 dbSNP
rs1185314140 2939 dbSNP
rs1422205953 2940 dbSNP
rs1410923185 2941 dbSNP
rs1258547879 2945 dbSNP
rs1163300789 2953 dbSNP
rs1186031969 2954 dbSNP
rs1485451829 2954 dbSNP
rs1243651854 2957 dbSNP
rs1374515642 2957 dbSNP
rs140163051 2957 dbSNP
rs568296045 2957 dbSNP
rs878943268 2957 dbSNP
rs952403024 2957 dbSNP
rs1363400762 2959 dbSNP
rs1299591245 2964 dbSNP
rs1328567998 2965 dbSNP
rs1431929105 2967 dbSNP
rs192510798 2967 dbSNP
rs1236645453 2968 dbSNP
rs910960903 2968 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B HITS-CLIP data was present in Chi_ControlA_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control A HITS-CLIP data was present in Chi_ControlB_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000374271.4 | 3UTR | AAGUCAGUGACGAAAAAUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000374271.4 | 3UTR | AAGUCAGUGACGAAAAAUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset Chi_ControlA_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control A
Location of target site ENST00000374271.4 | 3UTR | AAGUCAGUGACGAAAAAUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset Chi_ControlB_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control B
Location of target site ENST00000374271.4 | 3UTR | AAGUCAGUGACGAAAAAUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
Click to see details
138 hsa-miR-412-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT005780 ACVR1C activin A receptor type 1C 1 1
MIRT062013 YOD1 YOD1 deubiquitinase 2 2
MIRT345112 ATXN7L3 ataxin 7 like 3 2 2
MIRT383735 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 2
MIRT396956 CELF1 CUGBP Elav-like family member 1 2 2
MIRT439280 XIAP X-linked inhibitor of apoptosis 1 1
MIRT439313 VAT1 vesicle amine transport 1 1 1
MIRT439375 TUBA1A tubulin alpha 1a 1 1
MIRT439418 TMOD1 tropomodulin 1 1 1
MIRT439503 SURF4 surfeit 4 1 1
MIRT439563 SON SON DNA binding protein 1 1
MIRT439598 SLC3A2 solute carrier family 3 member 2 1 1
MIRT439670 SETD1B SET domain containing 1B 1 1
MIRT439767 RMND5A required for meiotic nuclear division 5 homolog A 1 1
MIRT439922 PPL periplakin 1 1
MIRT439947 PLEKHA6 pleckstrin homology domain containing A6 1 1
MIRT439952 PLCB4 phospholipase C beta 4 1 1
MIRT439961 PKD1 polycystin 1, transient receptor potential channel interacting 1 1
MIRT440005 PEG3 paternally expressed 3 1 1
MIRT440061 OSBPL8 oxysterol binding protein like 8 1 1
MIRT440166 MYH14 myosin heavy chain 14 1 1
MIRT440276 MAPK8IP1 mitogen-activated protein kinase 8 interacting protein 1 1 1
MIRT440437 IPO13 importin 13 1 1
MIRT440441 INTS3 integrator complex subunit 3 1 1
MIRT440448 INS insulin 1 1
MIRT440461 IGF2R insulin like growth factor 2 receptor 1 1
MIRT440472 IARS isoleucyl-tRNA synthetase 1 1
MIRT440530 GUCY1A3 guanylate cyclase 1 soluble subunit alpha 1 1
MIRT440542 GOLGA2 golgin A2 1 1
MIRT440569 GIGYF1 GRB10 interacting GYF protein 1 1 1
MIRT440608 FTSJD2 cap methyltransferase 1 1 1
MIRT440750 EEF1A2 eukaryotic translation elongation factor 1 alpha 2 1 1
MIRT440781 DOT1L DOT1 like histone lysine methyltransferase 1 1
MIRT440804 DNAJA4 DnaJ heat shock protein family (Hsp40) member A4 1 1
MIRT440867 CSDE1 cold shock domain containing E1 1 1
MIRT440890 CPEB4 cytoplasmic polyadenylation element binding protein 4 1 1
MIRT440917 COL1A1 collagen type I alpha 1 chain 1 1
MIRT440967 CDH22 cadherin 22 1 1
MIRT440968 CDH2 cadherin 2 1 1
MIRT441024 CALR calreticulin 1 1
MIRT441278 ACTB actin beta 1 1
MIRT448421 TNFAIP3 TNF alpha induced protein 3 2 2
MIRT462833 BCL3 B-cell CLL/lymphoma 3 2 2
MIRT465062 TSR1 TSR1, ribosome maturation factor 2 2
MIRT476050 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT485318 MZT1 mitotic spindle organizing protein 1 2 4
MIRT493584 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 6
MIRT494567 BAK1 BCL2 antagonist/killer 1 2 2
MIRT497393 RALY RALY heterogeneous nuclear ribonucleoprotein 2 2
MIRT503250 ZNF257 zinc finger protein 257 2 10
MIRT503656 ZNF138 zinc finger protein 138 2 10
MIRT505882 RNF219 ring finger protein 219 2 2
MIRT507525 DSTN destrin, actin depolymerizing factor 2 4
MIRT510663 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT514682 ZNF701 zinc finger protein 701 2 4
MIRT515370 ZNF208 zinc finger protein 208 2 6
MIRT525237 KCNJ12 potassium voltage-gated channel subfamily J member 12 2 2
MIRT527963 MTAP methylthioadenosine phosphorylase 2 2
MIRT528482 STAMBPL1 STAM binding protein like 1 2 2
MIRT529909 C1orf64 steroid receptor associated and regulated protein 2 4
MIRT531558 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT532234 KLF2 Kruppel like factor 2 2 4
MIRT532480 HOXA13 homeobox A13 2 2
MIRT535544 P2RY2 purinergic receptor P2Y2 2 2
MIRT547311 NR1D2 nuclear receptor subfamily 1 group D member 2 2 2
MIRT551795 ZNF117 zinc finger protein 117 2 4
MIRT554939 RAP1A RAP1A, member of RAS oncogene family 2 2
MIRT558171 EIF5A2 eukaryotic translation initiation factor 5A2 2 2
MIRT568771 LY6K lymphocyte antigen 6 family member K 2 2
MIRT570766 ZNF99 zinc finger protein 99 2 2
MIRT572405 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT573396 DLC1 DLC1 Rho GTPase activating protein 2 2
MIRT610403 RXRB retinoid X receptor beta 2 2
MIRT610886 SCN8A sodium voltage-gated channel alpha subunit 8 2 2
MIRT611197 TMEM105 transmembrane protein 105 2 2
MIRT611244 ZNF550 zinc finger protein 550 2 2
MIRT615669 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 4
MIRT617974 DOCK4 dedicator of cytokinesis 4 2 2
MIRT619150 ZNF326 zinc finger protein 326 2 2
MIRT619608 MKKS McKusick-Kaufman syndrome 2 2
MIRT621053 DGKD diacylglycerol kinase delta 2 2
MIRT623665 HRK harakiri, BCL2 interacting protein 2 2
MIRT624883 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT624939 MARCH2 membrane associated ring-CH-type finger 2 2 2
MIRT634198 TMOD2 tropomodulin 2 2 4
MIRT636727 AGO2 argonaute 2, RISC catalytic component 2 2
MIRT637741 POLR3K RNA polymerase III subunit K 2 2
MIRT638002 ZC3H13 zinc finger CCCH-type containing 13 2 2
MIRT640395 ZNF785 zinc finger protein 785 2 2
MIRT640505 ANTXR1 anthrax toxin receptor 1 2 2
MIRT641293 SLAMF1 signaling lymphocytic activation molecule family member 1 2 2
MIRT641863 STOML1 stomatin like 1 2 2
MIRT642600 C14orf180 chromosome 14 open reading frame 180 2 2
MIRT642895 CASP1 caspase 1 2 2
MIRT643967 FHL2 four and a half LIM domains 2 2 4
MIRT645237 KCTD12 potassium channel tetramerization domain containing 12 2 2
MIRT646621 CENPL centromere protein L 2 2
MIRT648620 CYB561A3 cytochrome b561 family member A3 2 2
MIRT648908 ZNF551 zinc finger protein 551 2 2
MIRT649439 HIBADH 3-hydroxyisobutyrate dehydrogenase 2 2
MIRT650637 LTF lactotransferrin 2 2
MIRT650971 STARD3NL STARD3 N-terminal like 2 2
MIRT651067 ZNF518B zinc finger protein 518B 2 4
MIRT652384 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT653958 SEPN1 selenoprotein N 2 2
MIRT656885 KIF1C kinesin family member 1C 2 2
MIRT657965 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT658080 FOXR2 forkhead box R2 2 2
MIRT662570 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT663089 METTL10 EEF1A lysine methyltransferase 2 2 2
MIRT683705 ZNF195 zinc finger protein 195 2 2
MIRT683835 ZNF682 zinc finger protein 682 2 2
MIRT706811 APOL4 apolipoprotein L4 2 2
MIRT707575 DYNC2LI1 dynein cytoplasmic 2 light intermediate chain 1 2 2
MIRT708606 ZNF260 zinc finger protein 260 2 2
MIRT708859 TMSB4X thymosin beta 4, X-linked 2 2
MIRT709861 PDIK1L PDLIM1 interacting kinase 1 like 2 2
MIRT709987 RBM41 RNA binding motif protein 41 2 2
MIRT710098 KPNA5 karyopherin subunit alpha 5 2 2
MIRT710211 ENAH ENAH, actin regulator 2 2
MIRT710868 B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 2 2
MIRT710986 SUSD5 sushi domain containing 5 2 2
MIRT711460 RNF145 ring finger protein 145 2 2
MIRT712302 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT713609 SYTL4 synaptotagmin like 4 2 2
MIRT713789 MAK16 MAK16 homolog 2 2
MIRT715480 MYO9B myosin IXB 2 2
MIRT716328 POU5F1 POU class 5 homeobox 1 2 2
MIRT717252 TMEM246 transmembrane protein 246 2 2
MIRT718077 CLIC5 chloride intracellular channel 5 2 2
MIRT718463 EED embryonic ectoderm development 2 2
MIRT718645 NKPD1 NTPase KAP family P-loop domain containing 1 2 2
MIRT718982 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT721078 RPS9 ribosomal protein S9 2 2
MIRT721419 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT721863 CENPJ centromere protein J 2 2
MIRT722492 PNKD paroxysmal nonkinesigenic dyskinesia 2 2
MIRT723391 CALN1 calneuron 1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-412 Gemcitabine approved 60750 Northern blot Mz-ChA-1 human cholangiocarcinoma cell lines 16762633 2006 down-regulated
miR-412 Progesterone approved 5994 Microarray Breast cancer 22330642 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-412 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-412 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-412-3p Verapamil 2520 NSC272366 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-412-3p Doxorubicin 31703 NSC123127 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780)
hsa-miR-412-3p Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (RKO)
hsa-miR-412-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (HCT-116)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780)
hsa-miR-412-3p Doxorubicin 31703 NSC123127 approved sensitive High Anaplastic Thyroid Cancer tissue
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM36)
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM47)
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM43)
hsa-miR-412-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-412-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-412-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (Panc1-GR1)
hsa-miR-412-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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