pre-miRNA Information
pre-miRNA hsa-mir-4772   
Genomic Coordinates chr2: 102432289 - 102432366
Description Homo sapiens miR-4772 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4772-3p
Sequence 48| CCUGCAACUUUGCCUGAUCAGA |69
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 6 2 + 102432341 29233923 MiREDiBase
A-to-I 7 2 + 102432342 23291724, 27587585, 29233923 MiREDiBase
A-to-I 20 2 + 102432355 29233923 MiREDiBase
A-to-I 22 2 + 102432357 29233923 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN28593220 7 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1256302752 1 dbSNP
rs1235136670 6 dbSNP
rs1321744784 8 dbSNP
rs1009816485 11 dbSNP
rs1022342638 21 dbSNP
Putative Targets

Gene Information
Gene Symbol TXNDC12   
Synonyms AG1, AGR1, ERP16, ERP18, ERP19, PDIA16, TLP19, hAG-1, hTLP19
Description thioredoxin domain containing 12
Transcript NM_015913   
Expression
Putative miRNA Targets on TXNDC12
3'UTR of TXNDC12
(miRNA target sites are highlighted)
>TXNDC12|NM_015913|3'UTR
   1 CATGAATGTGCCCCTTCTTTCATCAGAGTTAGTGTTCTGGAAGGAAAGCAGCAGGGAAGGGAATATTGAGGAATCATCTA
  81 GAACAATTAAGCCGACCAGGAAACCTCATTCCTACCTACACTGGAAGGAGCGCTCTCACTGTGGAAGAGTTCTGCTAACA
 161 GAAGCTGGTCTGCATGTTTGTGGATCCAGCGGAGAGTGGCAGACTTTCTTCTCCTTTTCCCTCTCACCTAAATGTCAACT
 241 TGTCATTGAATGTAAAGAATGAAACCTTCTGACACAAAACTTGAGCCACTTGGATGTTTACTCCTCGCACTTAAGTATTT
 321 GAGTCTTTTCCCATTTCCTCCCACTTTACTCACCTTAGTGGTGAAAGGAGACTAGTAGCATCTTTTCTACAACGTTAAAA
 401 TTGCAGAAGTAGCTTATCATTAAAAAACAACAACAACAACAATAACAATAAATCCTAAGTGTAAATCAGTTATTCTACCC
 481 CCTACCAAGGATATCAGCCTGTTTTTTCCCTTTTTTCTCCTGGGAATAATTGTGGGCTTCTTCCCAAATTTCTACAGCCT
 561 CTTTCCTCTTCTCATGCTTGAGCTTCCCTGTTTGCACGCATGCGTGTGCAGGACTGGCTGTGTGCTTGGACTCGGCTCCA
 641 GGTGGAAGCATGCTTTCCCTTGTTACTGTTGGAGAAACTCAAACCTTCAAGCCCTAGGTGTAGCCATTTTGTCAAGTCAT
 721 CAACTGTATTTTTGTACTGGCATTAACAAAAAAAGAGATAAAATATTGTACCATTAAACTTTAATAAAACTTTAAAAGGA
 801 AAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agaCUA-GUC-CGUUUCAACGUCc 5'
             ||| ||| | |:||| |||| 
Target 5' gtgGATCCAGCGGAGAGTGGCAGa 3'
180 - 203 135.00 -15.50
2
miRNA  3' agacuaguCCGUUUCAACGUCc 5'
                  | :||| |||||| 
Target 5' tctacaacGTTAAAATTGCAGa 3'
386 - 407 126.00 -6.90
3
miRNA  3' agACUA--GUCCGU-UUCA-ACGUCc 5'
            || |  || ||| : || ||||| 
Target 5' ccTGTTTGCACGCATGCGTGTGCAGg 3'
587 - 612 122.00 -16.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31482129 26 COSMIC
COSN7223292 34 COSMIC
COSN30483500 43 COSMIC
COSN30464996 44 COSMIC
COSN30101445 101 COSMIC
COSN20073820 150 COSMIC
COSN20073779 213 COSMIC
COSN31584281 325 COSMIC
COSN8638444 357 COSMIC
COSN31537885 571 COSMIC
COSN31542472 604 COSMIC
COSN30109722 720 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1206527445 2 dbSNP
rs775879949 7 dbSNP
rs1488868335 14 dbSNP
rs769939278 17 dbSNP
rs369634872 20 dbSNP
rs768211325 20 dbSNP
rs376019657 28 dbSNP
rs760040189 29 dbSNP
rs1247314091 31 dbSNP
rs770818133 37 dbSNP
rs1054035 44 dbSNP
rs1276134988 49 dbSNP
rs996603279 53 dbSNP
rs1217503622 69 dbSNP
rs12125706 78 dbSNP
rs1349148362 82 dbSNP
rs577172432 86 dbSNP
rs371070616 93 dbSNP
rs1037801282 94 dbSNP
rs1006276699 97 dbSNP
rs1042786288 101 dbSNP
rs1188876802 105 dbSNP
rs1173340850 109 dbSNP
rs1454645454 115 dbSNP
rs775919690 131 dbSNP
rs1046971197 132 dbSNP
rs929819353 133 dbSNP
rs912886038 135 dbSNP
rs1431361757 141 dbSNP
rs1329822806 150 dbSNP
rs1349461468 161 dbSNP
rs927901707 164 dbSNP
rs1276686197 168 dbSNP
rs1372436698 172 dbSNP
rs1228286020 174 dbSNP
rs1295992039 183 dbSNP
rs565913534 185 dbSNP
rs911415685 190 dbSNP
rs985602411 191 dbSNP
rs1450678148 192 dbSNP
rs1218811401 196 dbSNP
rs181768012 197 dbSNP
rs535738943 210 dbSNP
rs765989619 211 dbSNP
rs41306627 213 dbSNP
rs1027045622 214 dbSNP
rs1181155511 216 dbSNP
rs1459120600 217 dbSNP
rs916221621 220 dbSNP
rs189489370 228 dbSNP
rs1451114656 232 dbSNP
rs530488783 240 dbSNP
rs1236253451 259 dbSNP
rs1413433545 269 dbSNP
rs957820943 273 dbSNP
rs923683069 282 dbSNP
rs563257842 285 dbSNP
rs1325670094 288 dbSNP
rs1395350775 296 dbSNP
rs978692161 304 dbSNP
rs865793191 306 dbSNP
rs747594255 307 dbSNP
rs1288714024 308 dbSNP
rs1024956961 312 dbSNP
rs1014625836 315 dbSNP
rs895725115 321 dbSNP
rs772236291 324 dbSNP
rs184116946 327 dbSNP
rs1238766971 330 dbSNP
rs1034231893 343 dbSNP
rs34585692 355 dbSNP
rs1448661404 357 dbSNP
rs41312724 368 dbSNP
rs904330937 371 dbSNP
rs1471957500 383 dbSNP
rs1165242120 386 dbSNP
rs181587313 390 dbSNP
rs1031018060 393 dbSNP
rs1448012998 397 dbSNP
rs1157022719 402 dbSNP
rs774288335 406 dbSNP
rs1394132892 410 dbSNP
rs1321836403 412 dbSNP
rs996413256 419 dbSNP
rs1042839371 423 dbSNP
rs376139814 425 dbSNP
rs1414771070 428 dbSNP
rs541375381 433 dbSNP
rs1335002293 434 dbSNP
rs964714706 437 dbSNP
rs76000153 442 dbSNP
rs1040709729 443 dbSNP
rs1205617947 443 dbSNP
rs1352815098 443 dbSNP
rs1440494620 443 dbSNP
rs1189716832 445 dbSNP
rs71653028 445 dbSNP
rs749117738 446 dbSNP
rs943670879 446 dbSNP
rs868690794 454 dbSNP
rs1180167216 456 dbSNP
rs1414234190 465 dbSNP
rs779874424 470 dbSNP
rs1454337405 481 dbSNP
rs1172530512 484 dbSNP
rs1400622083 485 dbSNP
rs577312722 487 dbSNP
rs1416524177 489 dbSNP
rs911481407 493 dbSNP
rs1355765511 497 dbSNP
rs7512076 501 dbSNP
rs1440078427 507 dbSNP
rs543462110 514 dbSNP
rs920081517 515 dbSNP
rs906345600 519 dbSNP
rs1046759325 521 dbSNP
rs1342776000 525 dbSNP
rs576351068 538 dbSNP
rs557998765 540 dbSNP
rs947965331 554 dbSNP
rs189520925 555 dbSNP
rs895062857 560 dbSNP
rs1053418261 561 dbSNP
rs746131991 564 dbSNP
rs1252870729 566 dbSNP
rs1419763058 570 dbSNP
rs1198170986 582 dbSNP
rs1376501582 583 dbSNP
rs1215302963 584 dbSNP
rs1025429808 590 dbSNP
rs1174714650 594 dbSNP
rs1350802007 598 dbSNP
rs936326055 600 dbSNP
rs923714168 603 dbSNP
rs572347403 604 dbSNP
rs1398101247 616 dbSNP
rs1241426904 618 dbSNP
rs372843669 619 dbSNP
rs977844611 620 dbSNP
rs1273491566 627 dbSNP
rs1439014248 633 dbSNP
rs992177387 634 dbSNP
rs374786941 647 dbSNP
rs1236366285 651 dbSNP
rs933498292 653 dbSNP
rs1034284280 654 dbSNP
rs1001422919 668 dbSNP
rs781202218 669 dbSNP
rs184657020 688 dbSNP
rs1253303042 689 dbSNP
rs923428482 690 dbSNP
rs1481080055 692 dbSNP
rs1209377349 693 dbSNP
rs1265336840 700 dbSNP
rs975402437 701 dbSNP
rs1021467000 703 dbSNP
rs781245710 713 dbSNP
rs1390049781 719 dbSNP
rs757424940 729 dbSNP
rs1016517892 737 dbSNP
rs751675826 740 dbSNP
rs1172980154 743 dbSNP
rs1292477033 755 dbSNP
rs1374490390 755 dbSNP
rs1462155688 755 dbSNP
rs1010438840 757 dbSNP
rs1391688434 757 dbSNP
rs1442401928 757 dbSNP
rs576106398 759 dbSNP
rs984818933 759 dbSNP
rs1297441331 771 dbSNP
rs554376249 773 dbSNP
rs1263865155 779 dbSNP
rs1337073834 785 dbSNP
rs1214324908 793 dbSNP
rs1248019693 795 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B HITS-CLIP data was present in Chi_ControlA_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control A HITS-CLIP data was present in Chi_ControlB_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_015913 | 3UTR | UUUCCCAUUUCCUCCCACUUUACUCACCUUAGUGGUGAAAGGAGACUAGUAGCAUCUUUUCUACAACGUUAAAAUUGCAGAAGUAGCUUAUCAUUAAAAAACAACAACAACAACAAUAACAAUAAAUCCUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_015913 | 3UTR | UUACUCACCUUAGUGGUGAAAGGAGACUAGUAGCAUCUUUUCUACAACGUUAAAAUUGCAGAAGUAGCUUAUCAUUAAAAAACAACAACAACAACAAUAACAAUAAAUCCUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_015913 | 3UTR | CCAUUUCCUCCCACUUUACUCACCUUAGUGGUGAAAGGAGACUAGUAGCAUCUUUUCUACAACGUUAAAAUUGCAGAAGUAGCUUAUCAUUAAAAAACAACAACAACAACAAUAACAAUAAAUCCUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_015913 | 3UTR | UUCCUCCCACUUUACUCACCUUAGUGGUGAAAGGAGACUAGUAGCAUCUUUUCUACAACGUUAAAAUUGCAGAAGUAGCUUAUCAUUAAAAAACAACAACAACAACAAUAACAAUAAAUCCUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_015913 | 3UTR | AUUUCCUCCCACUUUACUCACCUUAGUGGUGAAAGGAGACUAGUAGCAUCUUUUCUACAACGUUAAAAUUGCAGAAGUAGCUUAUCAUUAAAAAACAACAACAACAACAAUAACAAUAAAUCCUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_015913 | 3UTR | CACUUUACUCACCUUAGUGGUGAAAGGAGACUAGUAGCAUCUUUUCUACAACGUUAAAAUUGCAGAAGUAGCUUAUCAUUAAAAAACAACAACAACAACAAUAACAAUAAAUCCUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000371626.4 | 3UTR | AGAAGUAGCUUAUCAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000371626.4 | 3UTR | AGAAGUAGCUUAUCAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset Chi_ControlA_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control A
Location of target site ENST00000371626.4 | 3UTR | AGAAGUAGCUUAUCAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 10 for dataset Chi_ControlB_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control B
Location of target site ENST00000371626.4 | 3UTR | AGAAGUAGCUUAUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
313 hsa-miR-4772-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT079462 RAB40B RAB40B, member RAS oncogene family 2 2
MIRT092011 SNRK SNF related kinase 2 10
MIRT259504 TXLNG taxilin gamma 2 2
MIRT286668 ZNF207 zinc finger protein 207 2 2
MIRT393055 RSBN1L round spermatid basic protein 1 like 2 2
MIRT443335 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT443430 MAPT microtubule associated protein tau 2 2
MIRT454267 PSMA1 proteasome subunit alpha 1 2 2
MIRT461774 MPDU1 mannose-P-dolichol utilization defect 1 2 2
MIRT473561 MATR3 matrin 3 2 2
MIRT495678 PRKD3 protein kinase D3 2 2
MIRT502649 DCTN5 dynactin subunit 5 2 8
MIRT503958 ZNF180 zinc finger protein 180 2 6
MIRT504114 GPR158 G protein-coupled receptor 158 2 2
MIRT513556 IL5 interleukin 5 2 2
MIRT529025 EXOC8 exocyst complex component 8 2 2
MIRT530632 PPIC peptidylprolyl isomerase C 2 4
MIRT536889 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT537224 GATA6 GATA binding protein 6 2 6
MIRT539006 AVL9 AVL9 cell migration associated 2 2
MIRT539129 ARHGEF17 Rho guanine nucleotide exchange factor 17 2 2
MIRT539572 CNKSR3 CNKSR family member 3 2 2
MIRT556145 MED12L mediator complex subunit 12 like 2 2
MIRT559481 ARL8A ADP ribosylation factor like GTPase 8A 2 2
MIRT560095 ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit 2 2
MIRT561661 RNF11 ring finger protein 11 2 4
MIRT569672 SEC23B Sec23 homolog B, coat complex II component 2 4
MIRT571883 MSL2 MSL complex subunit 2 2 2
MIRT575071 Ets1 E26 avian leukemia oncogene 1, 5' domain 2 4
MIRT607053 IDS iduronate 2-sulfatase 2 2
MIRT607801 RHBDL2 rhomboid like 2 2 4
MIRT608145 SYAP1 synapse associated protein 1 2 4
MIRT609242 SERPINA4 serpin family A member 4 2 2
MIRT612060 PDGFRA platelet derived growth factor receptor alpha 2 2
MIRT615120 BCL11B B-cell CLL/lymphoma 11B 2 2
MIRT617270 EXOSC10 exosome component 10 2 2
MIRT617684 MAPKBP1 mitogen-activated protein kinase binding protein 1 2 2
MIRT618063 ZNF799 zinc finger protein 799 2 2
MIRT618101 PPP5D1 PPP5 tetratricopeptide repeat domain containing 1 2 2
MIRT618487 DENND5B DENN domain containing 5B 2 4
MIRT618801 SPATA21 spermatogenesis associated 21 2 2
MIRT618907 CDK9 cyclin dependent kinase 9 2 2
MIRT619392 RSPH3 radial spoke head 3 homolog 2 2
MIRT619896 NPTXR neuronal pentraxin receptor 2 2
MIRT620069 ZNF85 zinc finger protein 85 2 2
MIRT620085 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 2
MIRT620782 IL10RB interleukin 10 receptor subunit beta 2 2
MIRT620859 SERPING1 serpin family G member 1 2 2
MIRT621161 RTTN rotatin 2 2
MIRT621217 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT623445 KDM5A lysine demethylase 5A 2 2
MIRT623639 IDE insulin degrading enzyme 2 2
MIRT624190 DDX19B DEAD-box helicase 19B 2 2
MIRT624699 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT624906 CTCFL CCCTC-binding factor like 2 2
MIRT624954 SERF2 small EDRK-rich factor 2 2 2
MIRT625026 ZNF730 zinc finger protein 730 2 2
MIRT625117 SLC1A5 solute carrier family 1 member 5 2 2
MIRT625129 NUP93 nucleoporin 93 2 2
MIRT625145 ITPRIPL1 inositol 1,4,5-trisphosphate receptor interacting protein-like 1 2 2
MIRT625259 ZNF566 zinc finger protein 566 2 2
MIRT625280 PNPT1 polyribonucleotide nucleotidyltransferase 1 2 2
MIRT625331 TNFRSF13B TNF receptor superfamily member 13B 2 2
MIRT625466 ZNF135 zinc finger protein 135 2 2
MIRT625525 FGFR1 fibroblast growth factor receptor 1 2 2
MIRT625724 CXorf38 chromosome X open reading frame 38 2 2
MIRT625834 NXPE2 neurexophilin and PC-esterase domain family member 2 2 2
MIRT625905 LINC00632 long intergenic non-protein coding RNA 632 2 2
MIRT626017 XRCC2 X-ray repair cross complementing 2 2 2
MIRT626048 PDE4C phosphodiesterase 4C 2 2
MIRT626166 RRP1B ribosomal RNA processing 1B 2 2
MIRT626171 DNAJB13 DnaJ heat shock protein family (Hsp40) member B13 2 2
MIRT626348 PACS1 phosphofurin acidic cluster sorting protein 1 2 2
MIRT626362 DIS3L DIS3 like exosome 3'-5' exoribonuclease 2 2
MIRT626442 SRSF7 serine and arginine rich splicing factor 7 2 2
MIRT626532 EMCN endomucin 2 2
MIRT626575 MED7 mediator complex subunit 7 2 2
MIRT626639 ZNF551 zinc finger protein 551 2 2
MIRT626666 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT626681 CISD2 CDGSH iron sulfur domain 2 2 2
MIRT626772 PI4K2B phosphatidylinositol 4-kinase type 2 beta 2 2
MIRT626788 KCNK6 potassium two pore domain channel subfamily K member 6 2 2
MIRT626821 PRR11 proline rich 11 2 2
MIRT626831 ZNF430 zinc finger protein 430 2 2
MIRT626884 PTCD3 pentatricopeptide repeat domain 3 2 2
MIRT626941 TTR transthyretin 2 2
MIRT626960 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627454 SYNRG synergin gamma 2 2
MIRT627788 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT627821 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT627949 NMNAT1 nicotinamide nucleotide adenylyltransferase 1 2 2
MIRT627998 MELK maternal embryonic leucine zipper kinase 2 2
MIRT628019 MAP7 microtubule associated protein 7 2 2
MIRT628051 KIAA1468 KIAA1468 2 2
MIRT628129 HMGB1 high mobility group box 1 2 4
MIRT628143 HM13 histocompatibility minor 13 2 2
MIRT628237 FADS1 fatty acid desaturase 1 2 2
MIRT628794 A2ML1 alpha-2-macroglobulin like 1 2 2
MIRT628874 FAM177A1 family with sequence similarity 177 member A1 2 4
MIRT629251 KDM2B lysine demethylase 2B 2 2
MIRT629320 ZNF487P zinc finger protein 487 1 1
MIRT629361 IRAK4 interleukin 1 receptor associated kinase 4 2 2
MIRT629800 GPR82 G protein-coupled receptor 82 2 2
MIRT629919 POLR2D RNA polymerase II subunit D 2 2
MIRT630099 DCAF10 DDB1 and CUL4 associated factor 10 2 2
MIRT630487 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT630722 FPR1 formyl peptide receptor 1 2 2
MIRT631018 DNAJC22 DnaJ heat shock protein family (Hsp40) member C22 2 2
MIRT631073 ZNF829 zinc finger protein 829 2 2
MIRT631230 C7orf65 chromosome 7 open reading frame 65 2 2
MIRT631248 ABCB5 ATP binding cassette subfamily B member 5 2 2
MIRT631680 NQO2 N-ribosyldihydronicotinamide:quinone reductase 2 2 2
MIRT631780 IL17RA interleukin 17 receptor A 2 2
MIRT632044 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT632132 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT632202 ZKSCAN1 zinc finger with KRAB and SCAN domains 1 2 2
MIRT632410 SLC30A5 solute carrier family 30 member 5 2 2
MIRT632523 PSMB2 proteasome subunit beta 2 2 2
MIRT632547 PRPF4 pre-mRNA processing factor 4 2 2
MIRT632702 MTA3 metastasis associated 1 family member 3 2 2
MIRT633134 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT633365 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT633551 ATAD3C ATPase family, AAA domain containing 3C 2 2
MIRT633698 LRRC8B leucine rich repeat containing 8 VRAC subunit B 2 2
MIRT633793 SOX7 SRY-box 7 2 2
MIRT634512 NKAP NFKB activating protein 2 2
MIRT634830 ARHGEF39 Rho guanine nucleotide exchange factor 39 2 2
MIRT634917 RBM4B RNA binding motif protein 4B 2 2
MIRT634972 C8orf17 chromosome 8 open reading frame 17 2 2
MIRT635107 MAVS mitochondrial antiviral signaling protein 2 2
MIRT635199 FXN frataxin 2 2
MIRT635407 KIAA1614 KIAA1614 2 2
MIRT635417 CAPZA2 capping actin protein of muscle Z-line alpha subunit 2 2 2
MIRT635433 LRP10 LDL receptor related protein 10 2 2
MIRT635484 ST3GAL2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 2 2
MIRT635513 C1orf64 steroid receptor associated and regulated protein 2 2
MIRT635617 ZNF439 zinc finger protein 439 2 2
MIRT635639 TRMT10B tRNA methyltransferase 10B 2 2
MIRT635736 IFNAR1 interferon alpha and beta receptor subunit 1 2 2
MIRT635897 SP110 SP110 nuclear body protein 2 2
MIRT635936 PLA2G12A phospholipase A2 group XIIA 2 2
MIRT636019 GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 2 2
MIRT636277 RFFL ring finger and FYVE like domain containing E3 ubiquitin protein ligase 2 2
MIRT636287 RAD51L3-RFFL RAD51L3-RFFL readthrough 2 2
MIRT636344 PHAX phosphorylated adaptor for RNA export 2 2
MIRT636472 KLHL7 kelch like family member 7 2 2
MIRT636893 C5orf45 MRN complex interacting protein 2 2
MIRT636984 ZNF561 zinc finger protein 561 2 2
MIRT637041 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT637148 PCDHA6 protocadherin alpha 6 2 4
MIRT637369 ORAI2 ORAI calcium release-activated calcium modulator 2 2 4
MIRT637379 HINFP histone H4 transcription factor 2 2
MIRT637399 ZNF546 zinc finger protein 546 2 2
MIRT637721 MYOZ3 myozenin 3 2 2
MIRT637771 PDLIM3 PDZ and LIM domain 3 2 2
MIRT637905 FAM153B family with sequence similarity 153 member B 2 2
MIRT638129 UBXN7 UBX domain protein 7 2 2
MIRT638564 IFNE interferon epsilon 2 2
MIRT638581 HYPK huntingtin interacting protein K 2 2
MIRT638792 EDARADD EDAR associated death domain 2 2
MIRT638945 BMPR2 bone morphogenetic protein receptor type 2 2 2
MIRT640676 ARSK arylsulfatase family member K 2 2
MIRT641734 TXNL1 thioredoxin like 1 2 2
MIRT642163 ZBTB25 zinc finger and BTB domain containing 25 2 2
MIRT642512 ORC6 origin recognition complex subunit 6 2 2
MIRT642622 CDKN3 cyclin dependent kinase inhibitor 3 2 2
MIRT642701 FGFR1OP2 FGFR1 oncogene partner 2 2 2
MIRT643550 C11orf70 chromosome 11 open reading frame 70 2 2
MIRT643868 COX20 COX20, cytochrome c oxidase assembly factor 2 2
MIRT643936 WIPF3 WAS/WASL interacting protein family member 3 2 2
MIRT644034 CENPM centromere protein M 2 2
MIRT644595 SPOP speckle type BTB/POZ protein 2 2
MIRT644693 ZNF320 zinc finger protein 320 2 2
MIRT645122 HES2 hes family bHLH transcription factor 2 2 2
MIRT645614 TSPAN6 tetraspanin 6 2 2
MIRT646260 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT646994 ZNF621 zinc finger protein 621 2 2
MIRT647549 CYP2B6 cytochrome P450 family 2 subfamily B member 6 2 2
MIRT648479 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT649069 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT649244 TRIM65 tripartite motif containing 65 2 2
MIRT649301 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT650124 G6PC glucose-6-phosphatase catalytic subunit 2 2
MIRT650167 USHBP1 USH1 protein network component harmonin binding protein 1 2 2
MIRT651263 ZKSCAN4 zinc finger with KRAB and SCAN domains 4 2 2
MIRT652140 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT652159 TRIM66 tripartite motif containing 66 2 2
MIRT652673 TIMELESS timeless circadian clock 2 2
MIRT654237 RNF115 ring finger protein 115 2 2
MIRT655229 PEX5L peroxisomal biogenesis factor 5 like 2 2
MIRT655255 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT656064 MTMR10 myotubularin related protein 10 2 2
MIRT656575 LSM10 LSM10, U7 small nuclear RNA associated 2 2
MIRT656754 LDHA lactate dehydrogenase A 2 2
MIRT657687 GPR155 G protein-coupled receptor 155 2 2
MIRT657811 GJD3 gap junction protein delta 3 2 2
MIRT658403 FAM212B family with sequence similarity 212 member B 2 2
MIRT660211 BMPR1A bone morphogenetic protein receptor type 1A 2 2
MIRT660241 BMP7 bone morphogenetic protein 7 2 2
MIRT660450 ATG14 autophagy related 14 2 2
MIRT660546 ARHGAP29 Rho GTPase activating protein 29 2 2
MIRT660620 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 2 2
MIRT660759 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT660987 ABHD2 abhydrolase domain containing 2 2 2
MIRT661037 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT661047 RABAC1 Rab acceptor 1 2 2
MIRT661076 FFAR2 free fatty acid receptor 2 2 2
MIRT661152 ZNF101 zinc finger protein 101 2 2
MIRT661278 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT661521 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT661710 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT661721 KLF8 Kruppel like factor 8 2 3
MIRT661730 RAB9A RAB9A, member RAS oncogene family 2 2
MIRT662240 PGBD4 piggyBac transposable element derived 4 2 2
MIRT662337 MYLK3 myosin light chain kinase 3 2 2
MIRT662450 SEMA5A semaphorin 5A 2 2
MIRT662743 LRRC3C leucine rich repeat containing 3C 2 2
MIRT662769 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT663012 KIAA1586 KIAA1586 2 2
MIRT663098 THEM4 thioesterase superfamily member 4 2 2
MIRT663800 BET1L Bet1 golgi vesicular membrane trafficking protein like 2 2
MIRT663878 CXorf56 chromosome X open reading frame 56 2 2
MIRT664679 TMEM19 transmembrane protein 19 2 2
MIRT664695 DBF4 DBF4 zinc finger 2 2
MIRT664762 MESDC2 mesoderm development LRP chaperone 2 2
MIRT664774 LIAS lipoic acid synthetase 2 2
MIRT664907 PDE6A phosphodiesterase 6A 2 2
MIRT664925 BHMT2 betaine--homocysteine S-methyltransferase 2 2 2
MIRT665244 ZNF384 zinc finger protein 384 2 2
MIRT665529 USP14 ubiquitin specific peptidase 14 2 2
MIRT665535 UROS uroporphyrinogen III synthase 2 2
MIRT665630 TSHZ2 teashirt zinc finger homeobox 2 2 2
MIRT665808 TMEM168 transmembrane protein 168 2 2
MIRT666151 SP2 Sp2 transcription factor 2 2
MIRT666649 RBM48 RNA binding motif protein 48 2 2
MIRT667212 NIPAL1 NIPA like domain containing 1 2 2
MIRT667514 LUC7L2 LUC7 like 2, pre-mRNA splicing factor 2 2
MIRT667541 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT667962 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT668004 HCFC2 host cell factor C2 2 2
MIRT668101 GK5 glycerol kinase 5 (putative) 2 2
MIRT668151 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT668254 FUT11 fucosyltransferase 11 2 2
MIRT668424 FAM20B FAM20B, glycosaminoglycan xylosylkinase 2 2
MIRT668468 FADS6 fatty acid desaturase 6 2 2
MIRT668849 CYCS cytochrome c, somatic 2 2
MIRT668985 CIAO1 cytosolic iron-sulfur assembly component 1 2 2
MIRT669020 MPZ myelin protein zero 2 2
MIRT669232 C7orf55-LUC7L2 C7orf55-LUC7L2 readthrough 2 2
MIRT671099 ZNF665 zinc finger protein 665 2 2
MIRT671496 SLC38A9 solute carrier family 38 member 9 2 2
MIRT672717 TMIGD2 transmembrane and immunoglobulin domain containing 2 2 2
MIRT672909 KRBA2 KRAB-A domain containing 2 2 2
MIRT672962 ZNF655 zinc finger protein 655 2 2
MIRT673609 HPSE heparanase 2 2
MIRT673740 TCF23 transcription factor 23 2 2
MIRT673755 ZNF333 zinc finger protein 333 2 2
MIRT673780 PROSER2 proline and serine rich 2 2 2
MIRT674217 FAM120AOS family with sequence similarity 120A opposite strand 2 2
MIRT674343 KCMF1 potassium channel modulatory factor 1 2 2
MIRT674756 QRSL1 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 2 2
MIRT674811 FAM229B family with sequence similarity 229 member B 2 2
MIRT675173 BPTF bromodomain PHD finger transcription factor 2 2
MIRT675265 ZNF431 zinc finger protein 431 2 2
MIRT675954 FOXK1 forkhead box K1 2 2
MIRT676155 OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 2 2
MIRT676195 GSTM3 glutathione S-transferase mu 3 2 2
MIRT676437 PLEKHM3 pleckstrin homology domain containing M3 2 2
MIRT676466 RACGAP1 Rac GTPase activating protein 1 2 2
MIRT676563 VSIG1 V-set and immunoglobulin domain containing 1 2 2
MIRT676715 METTL14 methyltransferase like 14 2 2
MIRT677197 MURC caveolae associated protein 4 2 2
MIRT677276 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT677350 POC1A POC1 centriolar protein A 2 2
MIRT677507 SLC10A6 solute carrier family 10 member 6 2 2
MIRT677552 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT677621 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 2
MIRT677690 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT677748 GNB4 G protein subunit beta 4 2 2
MIRT678106 MICA MHC class I polypeptide-related sequence A 2 2
MIRT678336 MCTS1 MCTS1, re-initiation and release factor 2 2
MIRT678454 GLYAT glycine-N-acyltransferase 2 2
MIRT678472 RNF222 ring finger protein 222 2 2
MIRT678560 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT679302 SSBP2 single stranded DNA binding protein 2 2 2
MIRT679371 GP2 glycoprotein 2 2 2
MIRT679380 WDR92 WD repeat domain 92 2 2
MIRT679575 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT679683 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT679876 SLC25A51 solute carrier family 25 member 51 2 2
MIRT680092 ETS1 ETS proto-oncogene 1, transcription factor 2 5
MIRT680470 C3 complement C3 2 2
MIRT683082 A1BG alpha-1-B glycoprotein 2 2
MIRT683905 PSMB9 proteasome subunit beta 9 2 2
MIRT684177 MOG myelin oligodendrocyte glycoprotein 2 2
MIRT686213 ZNF267 zinc finger protein 267 2 2
MIRT688737 CNDP1 carnosine dipeptidase 1 2 2
MIRT689035 ANGPTL3 angiopoietin like 3 2 2
MIRT690683 PTCHD3 patched domain containing 3 2 2
MIRT697761 USP37 ubiquitin specific peptidase 37 2 2
MIRT704407 CTPS1 CTP synthase 1 2 2
MIRT705016 CAMK2N1 calcium/calmodulin dependent protein kinase II inhibitor 1 2 2
MIRT709567 GYG2 glycogenin 2 2 2
MIRT709955 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT710001 TXNDC12 thioredoxin domain containing 12 2 2
MIRT710219 JMJD4 jumonji domain containing 4 2 2
MIRT710478 CDH5 cadherin 5 2 2
MIRT713074 ENTHD1 ENTH domain containing 1 2 2
MIRT713890 RNF19B ring finger protein 19B 2 2
MIRT715337 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT715989 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT720098 SPTLC3 serine palmitoyltransferase long chain base subunit 3 2 2
MIRT720981 METTL21A methyltransferase like 21A 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4772-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)

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