pre-miRNA Information
pre-miRNA hsa-mir-6819   
Genomic Coordinates chr22: 36286847 - 36286907
Description Homo sapiens miR-6819 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6819-3p
Sequence 41| AAGCCUCUGUCCCCACCCCAG |61
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1279530967 2 dbSNP
rs967579979 3 dbSNP
rs776891214 4 dbSNP
rs771166635 8 dbSNP
rs747037324 9 dbSNP
rs879248090 11 dbSNP
rs1485325191 12 dbSNP
rs778157316 16 dbSNP
Putative Targets

Gene Information
Gene Symbol VAMP1   
Synonyms SPAX1, SYB1, VAMP-1
Description vesicle associated membrane protein 1
Transcript NM_199245   
Other Transcripts NM_016830 , NM_014231   
Expression
Putative miRNA Targets on VAMP1
3'UTR of VAMP1
(miRNA target sites are highlighted)
>VAMP1|NM_199245|3'UTR
   1 AGTTGCTGGTGGGGTGAAGAGGTGGGAAGGTCCTGGAGTCTTCTCCCTGCCTGCCTGCCTGCCTGGGGAGTGGGGCTGCT
  81 CTGACTGAGGTATGGAGACCGCTGCTATGGGATCGTCACCTGGTTCGGGACGGGGGAAGGGCAGAGACAAGGGATTTCTT
 161 TGATGGACAAGCCTTCCCCCTGCAACGCATTGCAGGGAGATGGCGCCTCCTGTTCTGAGGAAGTGGGGCTATGCTGTGTG
 241 TCACTGGCTTGGGTTGGAGGGAGACCATGGGGATGGGGCACTTAACAATGGAGAGACCTGAATGTCTGGTAACTTGGTGT
 321 AATTCACCCTCTTGTTTTCTCCTGTCTCTTTCTCTTTTCCGTCTGGGACTTCCTGATTCCTGTGTCCAGTCTACTTTTTT
 401 ACTTGAGAATGTACCACCCCTTCCCTGTTGTCCATTGCCATCCACATTCATGTCCTCTGCCCTCTGTTTGCTCTCTCAAC
 481 ACACTTCCCCACCCACCGTCCTCCATTCCAGCCCAGGCTTCTCCATCACCCATTCCTCCTTTTTCGTTGCGTTCATTTGC
 561 ACTCTGTCCCTCAACACTAGAAATGCTGCTCGTGGCACAATCTAAGTCATTACCCGAAGAGCAACAGCTGGCGCCTCCTC
 641 CCTGCCTGCTTTTTCTGTACTCTCAAGTTCCCCCAAAGCCCCAAAGAGTTGGAGGCCAAGGGAAGGGGCAGGGAGGGGAG
 721 TGGCTGAGGCGAAGTACCCATGAAGCTGCCCAGACTTGGGAGGAGAAGAGTATCGGTGCCCATGGTGACTTCTAGAAAAC
 801 CTGGCCACTGGTAGGAGCTAGGGAGGGGCTGGGAAGATGGCAGCTCACTCAGTACTGCCTGGTCATGTGGAGCTTTCCTT
 881 CCTGGACCAGGCCTGAAGAGGGTCCTGGGGGTGGACCAAAGTCCAACTTGGTTTCAGTGCAGTACCCTTTTCGAAAGTAA
 961 AAACTTGTTTTTTGTAGTTATTTCTAATCTGTTCGTCCAGGATTTTCCGTGTCTTTGGGGATCTTACAACTTTACTTTGT
1041 TCTCCAGAGGCCTGGAGAACACTTAGGGATTGTGAAAATAGCAGGACTTGTTTCCATCCTAGAAGCAGTCCCATGTGCTT
1121 CTAGCTGGAAGGAGCTTTCTCTTCTTTACATTTTCTACAGCATTCTGTATGAGGGCACCAAATAAATCCATCTAGCTGGT
1201 AGTTTTATCTAGCCAAATAATTTAACCTAGCTCCCAGTTAATTGTTGGCATAAAGAGAGAGATTGCCTGTTAGTTATAGA
1281 GAAACAGTGAGTCAAGTGCTTAATTTGAAAGTAACAAGCTCAGAGGAAGCCACTCCTTGCCCTCGTTAAAGAGGGTCCTG
1361 TTCCTCTCTTCCTGTTGATGAAGGAGCGTGAGGGTGTTAGCAGTGTGAGATCTTTGGACACCCATGGAATCCTTTCCTCC
1441 ACACCACCCGTGCACTTGCCAAAGACAGGGATGAGGCAAGTGGTTCTTCCTGGGGCCCGGCCGATCCTCAGGATGCAGAG
1521 AAGTCATGTAGACCCACCAGCCCCACCTTGGGGGGAGGCGTGCCAGCCTGTGTCAGGTGTGCTTGTGTATTGCTGTGCTG
1601 TCATGGGGCCCTCTCCTTGAGAGCCGCCTCTCTGTTCTTCCTGTAGTATATTCCCCTTTGAACCACCCTTTCCTGTCTGA
1681 ATTCTACTTTGCCTCCTTTCTCTTCCTCCTCTTTGCATGGTTTGTGTGTATAGACAGTGGAACCTGAGGATGGGATCTGC
1761 TCAGCCTATCTTCGGGGCAATTGCTGAGCTTCAGGATGGGCTATTAATGTGGGATAAGCCCAGGTGCAAGGGGAGGAGGG
1841 CAGGCTGGGAACAGAGCGGAGAATGCCCATGGCCCTTTATTCCTTCTTCCCTCGGTCCACGAACAGGAAGAGGCTGAGGC
1921 CATGCTGGGCAGGGTCTGGATGCCCACTTTCCATGCAGCAGCATTTCATTGCTCAAAACCATCCTTCCTTTCCTTTCGCC
2001 CTTGTTTCCCACATTCCCTTCGTCCTGCCCAAGGGCGGGACTGAAGAGCTGGAAGAAAGCAGTCAGTACCCTCCCAACGG
2081 CCCCCCTCGAAGGTCTCCACTCTCCTCTGGGCTCCTCCTTGCCTAATGCAGGGGGTCACCGCTGGAGAAGAACCACCACT
2161 GTCCTCGATGTGTCCCAAGCCTGGAGCGAATCCGTCCTCTTGGCTCTCCCAGCCCTATCACAGGAATCATTCCTGGGTTT
2241 CTGTCCCTCTGAGGCTCACCAGGTGTAGTTGGCCTTGTTCTTTGGGGGTATTAGCCCTTCTACTTTCTTTCTCACCCACC
2321 CTGTACCCTCTTCTGTGTGTCTCTGCTATCCCCCTTTCCTCCCACCACCCATGTGCATGAGCAAATGTGCAACAAAACCC
2401 TGGGACTTTGCAGTCAAATGAAGCTGAGCTTCCCACATCCCGTTCTTCGGTTTGCCATGAGACGATGTGGGGTTTCCACT
2481 GTGTGTCTGTCATCACCTCTTTGTCTTTTTTTCCTAACCCTGATCTCATACTTGTATAGAGTAATAACAACAGTTGTACT
2561 TCCACCAAAGGCATGTGGCATATTTACCAATGTCATGTATTCTGAACAAAGGCAAAAAATACAAATTCCTACCATTAAAA
2641 AAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaccccaccCCUGUCUCCGAa 5'
                   ||| ||||||| 
Target 5' ccacgaacaGGA-AGAGGCTg 3'
1897 - 1916 147.00 -12.80
2
miRNA  3' gaCCCCACCCCUGUCUCCGAa 5'
            | | | |||  ||:|||| 
Target 5' agGAGCTAGGG--AGGGGCTg 3'
813 - 831 135.00 -13.70
3
miRNA  3' gacCCCACCCCUGUCUCCGAa 5'
             ||| ||||  || |||| 
Target 5' gcaGGGAGGGG--AGTGGCTg 3'
708 - 726 130.00 -18.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
448851 2036 ClinVar
COSN30533542 4 COSMIC
COSN30535020 7 COSMIC
COSN30479265 9 COSMIC
COSN23013699 10 COSMIC
COSN2534509 46 COSMIC
COSN27004518 50 COSMIC
COSN9567965 78 COSMIC
COSN30146051 83 COSMIC
COSN25706107 94 COSMIC
COSN31612915 105 COSMIC
COSN30143998 127 COSMIC
COSN27004519 131 COSMIC
COSN27004517 132 COSMIC
COSN13412743 158 COSMIC
COSN31508273 178 COSMIC
COSN19640368 186 COSMIC
COSN30143650 232 COSMIC
COSN28743113 326 COSMIC
COSN8586551 351 COSMIC
COSN30135747 361 COSMIC
COSN30533367 372 COSMIC
COSN31548421 407 COSMIC
COSN26641060 439 COSMIC
COSN26548976 445 COSMIC
COSN30132881 545 COSMIC
COSN31564882 591 COSMIC
COSN21020232 615 COSMIC
COSN31543179 633 COSMIC
COSN26637695 670 COSMIC
COSN31480330 691 COSMIC
COSN24381476 774 COSMIC
COSN28728274 793 COSMIC
COSN25086085 816 COSMIC
COSN30701395 844 COSMIC
COSN1150865 849 COSMIC
COSN31297414 896 COSMIC
COSN5186716 952 COSMIC
COSN24872556 953 COSMIC
COSN19665693 981 COSMIC
COSN30701327 1065 COSMIC
COSN25302432 1251 COSMIC
COSN202489 1449 COSMIC
COSN9753890 1524 COSMIC
COSN31560499 1773 COSMIC
COSN31493116 1781 COSMIC
COSN5325882 1816 COSMIC
COSN31594282 1842 COSMIC
COSN20345305 1851 COSMIC
COSN26508776 1988 COSMIC
COSN26732168 1994 COSMIC
COSN13412726 1997 COSMIC
COSN30512177 2010 COSMIC
COSN26441663 2036 COSMIC
COSN30505861 2078 COSMIC
COSN22102962 2117 COSMIC
COSN28866422 2167 COSMIC
COSN31544516 2170 COSMIC
COSN22061404 2187 COSMIC
COSN20783780 2249 COSMIC
COSN1580928 2536 COSMIC
COSN21510679 2584 COSMIC
COSN28858956 2632 COSMIC
rs12964 1851 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs181120359 6 dbSNP
rs1428658709 9 dbSNP
rs1418099689 10 dbSNP
rs749347812 11 dbSNP
rs777762832 12 dbSNP
rs753172231 14 dbSNP
rs761483184 19 dbSNP
rs767853659 20 dbSNP
rs1253358517 21 dbSNP
rs1205415365 22 dbSNP
rs755346217 27 dbSNP
rs751974920 30 dbSNP
rs1237166842 32 dbSNP
rs1372420956 33 dbSNP
rs764868962 35 dbSNP
rs761497818 43 dbSNP
rs1379560336 51 dbSNP
rs1048103146 55 dbSNP
rs1312239254 63 dbSNP
rs1232127274 65 dbSNP
rs1416121636 66 dbSNP
rs993116216 66 dbSNP
rs1164043413 69 dbSNP
rs898947421 74 dbSNP
rs1257345923 85 dbSNP
rs1472614443 88 dbSNP
rs1479653086 91 dbSNP
rs1192841007 92 dbSNP
rs1268208309 94 dbSNP
rs560356538 100 dbSNP
rs1180933019 101 dbSNP
rs560343278 104 dbSNP
rs1197576508 106 dbSNP
rs941539447 107 dbSNP
rs540511594 114 dbSNP
rs1170331169 115 dbSNP
rs916721295 119 dbSNP
rs1459941970 121 dbSNP
rs915544348 122 dbSNP
rs540739007 126 dbSNP
rs772650835 127 dbSNP
rs1403740680 130 dbSNP
rs574629519 131 dbSNP
rs71584833 132 dbSNP
rs928201341 134 dbSNP
rs978315593 142 dbSNP
rs558449162 148 dbSNP
rs1223736354 157 dbSNP
rs771249067 160 dbSNP
rs761752803 161 dbSNP
rs1220278734 167 dbSNP
rs989534295 172 dbSNP
rs1022408832 173 dbSNP
rs1417864088 176 dbSNP
rs1425881290 180 dbSNP
rs1166135041 184 dbSNP
rs1034969 186 dbSNP
rs1009142354 187 dbSNP
rs1300813805 189 dbSNP
rs954032398 193 dbSNP
rs1400284126 201 dbSNP
rs1269202438 204 dbSNP
rs1359648236 206 dbSNP
rs768422020 207 dbSNP
rs575177840 222 dbSNP
rs1313363295 223 dbSNP
rs1358561292 228 dbSNP
rs998181915 236 dbSNP
rs575607494 244 dbSNP
rs1351657215 246 dbSNP
rs1324337661 247 dbSNP
rs369568272 251 dbSNP
rs1488640128 255 dbSNP
rs1215374395 257 dbSNP
rs867395092 259 dbSNP
rs1240523747 267 dbSNP
rs756331634 275 dbSNP
rs1026175019 277 dbSNP
rs555885574 280 dbSNP
rs1443385644 281 dbSNP
rs1363950896 284 dbSNP
rs768731003 286 dbSNP
rs535998857 288 dbSNP
rs1037342597 289 dbSNP
rs2534717 293 dbSNP
rs1419736491 294 dbSNP
rs888238380 298 dbSNP
rs781268500 304 dbSNP
rs1012629960 309 dbSNP
rs560860511 317 dbSNP
rs74056957 325 dbSNP
rs2534716 326 dbSNP
rs386759935 327 dbSNP
rs939505205 328 dbSNP
rs1381751777 331 dbSNP
rs1243749725 333 dbSNP
rs1311315110 334 dbSNP
rs371057949 339 dbSNP
rs201282335 340 dbSNP
rs1223234220 341 dbSNP
rs1282425242 348 dbSNP
rs1353446929 357 dbSNP
rs1167645319 358 dbSNP
rs779195460 359 dbSNP
rs760621733 360 dbSNP
rs145237172 361 dbSNP
rs928253337 363 dbSNP
rs1452355892 371 dbSNP
rs759392947 374 dbSNP
rs774327813 378 dbSNP
rs1480399988 384 dbSNP
rs1231372385 385 dbSNP
rs1213158610 388 dbSNP
rs202093198 397 dbSNP
rs749492649 400 dbSNP
rs1232673532 402 dbSNP
rs1319113694 406 dbSNP
rs1308109020 409 dbSNP
rs777865936 413 dbSNP
rs769766199 414 dbSNP
rs1296062499 417 dbSNP
rs748627588 423 dbSNP
rs1375459075 424 dbSNP
rs915375675 427 dbSNP
rs1432741462 431 dbSNP
rs1365342925 432 dbSNP
rs1159619929 435 dbSNP
rs1418253621 438 dbSNP
rs1406140660 442 dbSNP
rs1450125408 445 dbSNP
rs943503642 446 dbSNP
rs750087343 448 dbSNP
rs1486049001 449 dbSNP
rs954147625 454 dbSNP
rs1256820076 461 dbSNP
rs1209400349 462 dbSNP
rs1365868805 464 dbSNP
rs1487109275 468 dbSNP
rs757470732 471 dbSNP
rs1238833239 473 dbSNP
rs1315491049 474 dbSNP
rs755550229 477 dbSNP
rs568559575 482 dbSNP
rs780448354 484 dbSNP
rs1480363929 487 dbSNP
rs756858290 496 dbSNP
rs987350219 497 dbSNP
rs753466399 498 dbSNP
rs1015529710 505 dbSNP
rs1289368257 518 dbSNP
rs1180272537 521 dbSNP
rs763594674 524 dbSNP
rs1259295891 532 dbSNP
rs1478707639 533 dbSNP
rs760117522 535 dbSNP
rs752310304 536 dbSNP
rs1026816145 543 dbSNP
rs767529902 545 dbSNP
rs561376892 546 dbSNP
rs894259729 549 dbSNP
rs770880125 550 dbSNP
rs1056780775 551 dbSNP
rs114253457 554 dbSNP
rs1485099016 558 dbSNP
rs773317031 561 dbSNP
rs1282902024 564 dbSNP
rs1343803681 565 dbSNP
rs1215199873 568 dbSNP
rs1220692976 568 dbSNP
rs1279300975 573 dbSNP
rs1012989910 574 dbSNP
rs770109060 575 dbSNP
rs528990207 583 dbSNP
rs902811071 588 dbSNP
rs1262225427 591 dbSNP
rs748168937 591 dbSNP
rs1327663504 592 dbSNP
rs1221614049 594 dbSNP
rs1042649225 595 dbSNP
rs1381515334 596 dbSNP
rs1386229193 601 dbSNP
rs1267550531 602 dbSNP
rs1327617830 604 dbSNP
rs1461750509 611 dbSNP
rs141124646 615 dbSNP
rs546853015 616 dbSNP
rs1373468217 620 dbSNP
rs1474935308 627 dbSNP
rs1166113551 630 dbSNP
rs915491827 632 dbSNP
rs546342393 633 dbSNP
rs1463601189 635 dbSNP
rs932792362 637 dbSNP
rs921362041 640 dbSNP
rs977217362 641 dbSNP
rs1193136450 642 dbSNP
rs1427207851 644 dbSNP
rs1363776817 654 dbSNP
rs769134568 660 dbSNP
rs1194694113 662 dbSNP
rs1402136094 663 dbSNP
rs1387617332 670 dbSNP
rs533578309 673 dbSNP
rs965409091 682 dbSNP
rs1335064170 683 dbSNP
rs1016046235 684 dbSNP
rs1272213784 688 dbSNP
rs71584834 702 dbSNP
rs1340870692 703 dbSNP
rs749431146 703 dbSNP
rs894058113 704 dbSNP
rs780360293 706 dbSNP
rs1246043779 712 dbSNP
rs1226637660 715 dbSNP
rs1053823293 717 dbSNP
rs1363004389 725 dbSNP
rs1179186106 726 dbSNP
rs763736645 730 dbSNP
rs758768912 731 dbSNP
rs1441454586 738 dbSNP
rs1369963794 741 dbSNP
rs544926462 744 dbSNP
rs1192055966 747 dbSNP
rs1261942236 749 dbSNP
rs1321831967 757 dbSNP
rs567396188 762 dbSNP
rs1397329575 764 dbSNP
rs778083252 766 dbSNP
rs1427864327 769 dbSNP
rs1397501838 770 dbSNP
rs1201592961 772 dbSNP
rs575543466 774 dbSNP
rs753475010 775 dbSNP
rs1251455477 776 dbSNP
rs1196347473 778 dbSNP
rs1439147729 779 dbSNP
rs1250772649 781 dbSNP
rs562091139 782 dbSNP
rs987936510 783 dbSNP
rs1336622313 786 dbSNP
rs777278836 789 dbSNP
rs1452595403 796 dbSNP
rs919054192 800 dbSNP
rs1234862121 801 dbSNP
rs1337556905 821 dbSNP
rs369954589 825 dbSNP
rs1003001207 828 dbSNP
rs143060738 846 dbSNP
rs1041812985 848 dbSNP
rs991196680 858 dbSNP
rs573338895 862 dbSNP
rs1035459000 863 dbSNP
rs1452431273 866 dbSNP
rs1328425506 867 dbSNP
rs1408139272 878 dbSNP
rs1003004574 879 dbSNP
rs894090650 881 dbSNP
rs1160005798 883 dbSNP
rs760065469 885 dbSNP
rs1377289995 889 dbSNP
rs2534715 896 dbSNP
rs1434603043 904 dbSNP
rs932823612 905 dbSNP
rs371394320 911 dbSNP
rs921392917 915 dbSNP
rs1160707584 926 dbSNP
rs754924386 940 dbSNP
rs1364085048 946 dbSNP
rs1021170508 948 dbSNP
rs751544496 952 dbSNP
rs530530643 953 dbSNP
rs71584835 958 dbSNP
rs1392479743 960 dbSNP
rs1334639269 964 dbSNP
rs894090833 964 dbSNP
rs762638803 973 dbSNP
rs1485331581 980 dbSNP
rs2534714 981 dbSNP
rs148986639 994 dbSNP
rs189529520 995 dbSNP
rs1279199111 1008 dbSNP
rs74056956 1009 dbSNP
rs568498243 1014 dbSNP
rs1201306468 1020 dbSNP
rs1403126959 1029 dbSNP
rs1430173805 1031 dbSNP
rs748397138 1033 dbSNP
rs1462037843 1039 dbSNP
rs781221614 1044 dbSNP
rs1372067146 1055 dbSNP
rs1402897720 1057 dbSNP
rs1462992900 1061 dbSNP
rs958541896 1063 dbSNP
rs1036182994 1065 dbSNP
rs1395184594 1067 dbSNP
rs755103226 1079 dbSNP
rs746956225 1083 dbSNP
rs1425236657 1096 dbSNP
rs1284823380 1098 dbSNP
rs941852462 1107 dbSNP
rs1222506604 1112 dbSNP
rs1414185826 1113 dbSNP
rs560722947 1114 dbSNP
rs1281198425 1121 dbSNP
rs1182788172 1133 dbSNP
rs1205169549 1144 dbSNP
rs909152925 1146 dbSNP
rs1479704448 1147 dbSNP
rs114509703 1149 dbSNP
rs1269695639 1157 dbSNP
rs958407885 1160 dbSNP
rs865953945 1161 dbSNP
rs928248701 1171 dbSNP
rs1480348736 1175 dbSNP
rs981100486 1177 dbSNP
rs11538646 1190 dbSNP
rs1429441852 1191 dbSNP
rs1247235124 1199 dbSNP
rs185066094 1213 dbSNP
rs1371789158 1215 dbSNP
rs1314749333 1219 dbSNP
rs540456464 1226 dbSNP
rs1020017896 1227 dbSNP
rs1403995074 1233 dbSNP
rs1300853626 1247 dbSNP
rs770855597 1257 dbSNP
rs967151923 1261 dbSNP
rs1404018768 1266 dbSNP
rs1310624518 1273 dbSNP
rs1011259406 1277 dbSNP
rs542768848 1277 dbSNP
rs1009762039 1286 dbSNP
rs1248066620 1288 dbSNP
rs879553472 1291 dbSNP
rs958168876 1293 dbSNP
rs1220578166 1295 dbSNP
rs1265548462 1296 dbSNP
rs1486406514 1296 dbSNP
rs1186228494 1303 dbSNP
rs1032606990 1312 dbSNP
rs779925949 1313 dbSNP
rs1164740018 1323 dbSNP
rs1385348138 1328 dbSNP
rs1423396028 1341 dbSNP
rs892783053 1344 dbSNP
rs1008190054 1345 dbSNP
rs1054043065 1360 dbSNP
rs566185897 1364 dbSNP
rs1288133751 1369 dbSNP
rs900082447 1371 dbSNP
rs1052234204 1374 dbSNP
rs1358846460 1378 dbSNP
rs1243798660 1385 dbSNP
rs997459159 1387 dbSNP
rs1041634177 1395 dbSNP
rs1215299977 1404 dbSNP
rs1240758389 1412 dbSNP
rs1459082609 1414 dbSNP
rs1365810730 1416 dbSNP
rs944207769 1419 dbSNP
rs908634595 1420 dbSNP
rs1162626910 1421 dbSNP
rs1047121658 1424 dbSNP
rs1243006196 1427 dbSNP
rs941883742 1434 dbSNP
rs1179148160 1436 dbSNP
rs1409516240 1439 dbSNP
rs1400983334 1441 dbSNP
rs931318184 1442 dbSNP
rs1418484436 1450 dbSNP
rs2534713 1455 dbSNP
rs1055720282 1459 dbSNP
rs937293719 1463 dbSNP
rs180779395 1465 dbSNP
rs778873075 1467 dbSNP
rs1281394418 1468 dbSNP
rs1488891937 1472 dbSNP
rs13842 1481 dbSNP
rs1326114518 1483 dbSNP
rs753592386 1490 dbSNP
rs2534712 1493 dbSNP
rs967207383 1494 dbSNP
rs531264176 1498 dbSNP
rs1234156853 1499 dbSNP
rs1470167177 1502 dbSNP
rs752254884 1503 dbSNP
rs766734708 1509 dbSNP
rs989869090 1512 dbSNP
rs957034159 1516 dbSNP
rs958238996 1523 dbSNP
rs1028702592 1536 dbSNP
rs995824968 1543 dbSNP
rs1481299025 1544 dbSNP
rs1176978366 1545 dbSNP
rs900114007 1548 dbSNP
rs1041272254 1551 dbSNP
rs1355208058 1555 dbSNP
rs562381997 1556 dbSNP
rs1032963451 1559 dbSNP
rs71584836 1560 dbSNP
rs1347688859 1564 dbSNP
rs1224339010 1566 dbSNP
rs1283101654 1570 dbSNP
rs887245786 1579 dbSNP
rs184765010 1582 dbSNP
rs953786916 1583 dbSNP
rs773522003 1590 dbSNP
rs1345654824 1593 dbSNP
rs1302145395 1597 dbSNP
rs1274270487 1602 dbSNP
rs1030522170 1616 dbSNP
rs1203127745 1625 dbSNP
rs559843986 1626 dbSNP
rs997493309 1628 dbSNP
rs1490755764 1631 dbSNP
rs1199654564 1636 dbSNP
rs931434182 1641 dbSNP
rs1422409553 1686 dbSNP
rs770179957 1688 dbSNP
rs546318440 1698 dbSNP
rs1428374234 1705 dbSNP
rs920006253 1706 dbSNP
rs1476890248 1709 dbSNP
rs1450333258 1712 dbSNP
rs374737641 1723 dbSNP
rs1055744050 1724 dbSNP
rs1420054194 1729 dbSNP
rs1409293318 1733 dbSNP
rs897804422 1734 dbSNP
rs1367501342 1735 dbSNP
rs1362197699 1743 dbSNP
rs1405826691 1746 dbSNP
rs1158956255 1762 dbSNP
rs866729262 1766 dbSNP
rs1452923945 1767 dbSNP
rs762004559 1768 dbSNP
rs1229999588 1770 dbSNP
rs776900454 1773 dbSNP
rs75602368 1774 dbSNP
rs147923947 1776 dbSNP
rs1360923858 1777 dbSNP
rs1222798218 1780 dbSNP
rs989975345 1791 dbSNP
rs957132221 1792 dbSNP
rs1267661755 1800 dbSNP
rs1449654992 1816 dbSNP
rs575169727 1818 dbSNP
rs116839028 1820 dbSNP
rs1045653889 1826 dbSNP
rs1287137823 1833 dbSNP
rs566173751 1850 dbSNP
rs12964 1851 dbSNP
rs768756830 1857 dbSNP
rs747450658 1858 dbSNP
rs1414225553 1865 dbSNP
rs1357972911 1869 dbSNP
rs775992685 1870 dbSNP
rs1401711098 1871 dbSNP
rs146913351 1872 dbSNP
rs746214938 1873 dbSNP
rs1471376511 1880 dbSNP
rs1419542591 1882 dbSNP
rs1188094678 1889 dbSNP
rs935784685 1890 dbSNP
rs910962078 1891 dbSNP
rs192577738 1893 dbSNP
rs1025804894 1894 dbSNP
rs1206503158 1895 dbSNP
rs767625629 1900 dbSNP
rs570943781 1901 dbSNP
rs1446174834 1913 dbSNP
rs1207088040 1914 dbSNP
rs1337291025 1918 dbSNP
rs1294106827 1921 dbSNP
rs780781733 1925 dbSNP
rs1377050109 1927 dbSNP
rs754547022 1928 dbSNP
rs1432027319 1929 dbSNP
rs1326231079 1930 dbSNP
rs1319020624 1931 dbSNP
rs1463315183 1937 dbSNP
rs1396308286 1940 dbSNP
rs1165175507 1942 dbSNP
rs751170514 1943 dbSNP
rs898612318 1944 dbSNP
rs1410897346 1946 dbSNP
rs953549515 1950 dbSNP
rs766411461 1954 dbSNP
rs551122030 1956 dbSNP
rs1247322084 1957 dbSNP
rs531152604 1961 dbSNP
rs937356151 1976 dbSNP
rs373313488 1984 dbSNP
rs1469650850 1987 dbSNP
rs907161284 1988 dbSNP
rs1274105893 1992 dbSNP
rs976272980 1993 dbSNP
rs1045452 1994 dbSNP
rs1320007573 1995 dbSNP
rs761903666 1997 dbSNP
rs548909077 1998 dbSNP
rs1339348572 1999 dbSNP
rs764104095 2002 dbSNP
rs1443644208 2004 dbSNP
rs760733176 2008 dbSNP
rs374739112 2011 dbSNP
rs528485399 2012 dbSNP
rs1347637205 2013 dbSNP
rs1171966219 2016 dbSNP
rs772428179 2017 dbSNP
rs1389552528 2021 dbSNP
rs1006213055 2022 dbSNP
rs745832349 2025 dbSNP
rs756785762 2028 dbSNP
rs746408132 2029 dbSNP
rs774537885 2032 dbSNP
rs542608112 2035 dbSNP
rs71584837 2036 dbSNP
rs747743898 2037 dbSNP
rs1468398435 2038 dbSNP
rs1341524533 2040 dbSNP
rs1273121739 2042 dbSNP
rs1264769503 2046 dbSNP
rs921698862 2048 dbSNP
rs974452309 2052 dbSNP
rs1349086588 2054 dbSNP
rs1303068429 2055 dbSNP
rs1217813423 2059 dbSNP
rs1254219723 2060 dbSNP
rs1420904952 2061 dbSNP
rs780974310 2062 dbSNP
rs369221825 2066 dbSNP
rs1484097188 2069 dbSNP
rs1363370190 2070 dbSNP
rs1442377866 2077 dbSNP
rs200887784 2078 dbSNP
rs532602716 2079 dbSNP
rs1436464848 2080 dbSNP
rs1395485327 2081 dbSNP
rs1175138338 2082 dbSNP
rs1431222822 2085 dbSNP
rs1407270606 2086 dbSNP
rs1410508292 2087 dbSNP
rs1469774628 2087 dbSNP
rs758222790 2088 dbSNP
rs1482772249 2089 dbSNP
rs1249659807 2092 dbSNP
rs142636658 2093 dbSNP
rs891709744 2097 dbSNP
rs1054152256 2102 dbSNP
rs1226178252 2105 dbSNP
rs935662681 2110 dbSNP
rs1335958248 2111 dbSNP
rs951688548 2116 dbSNP
rs1323955336 2120 dbSNP
rs1453235839 2125 dbSNP
rs910981042 2127 dbSNP
rs1481659194 2139 dbSNP
rs543954369 2140 dbSNP
rs1196521920 2141 dbSNP
rs1249892875 2148 dbSNP
rs1025840896 2150 dbSNP
rs995647366 2151 dbSNP
rs898646287 2166 dbSNP
rs536497006 2167 dbSNP
rs555231004 2170 dbSNP
rs541765403 2171 dbSNP
rs1375218330 2176 dbSNP
rs923403191 2182 dbSNP
rs1422435078 2186 dbSNP
rs1467232138 2188 dbSNP
rs1369382652 2191 dbSNP
rs572486499 2193 dbSNP
rs1001593270 2194 dbSNP
rs962302460 2197 dbSNP
rs907273750 2203 dbSNP
rs755802125 2204 dbSNP
rs1184630602 2213 dbSNP
rs1309242803 2214 dbSNP
rs1228036768 2218 dbSNP
rs1461207122 2221 dbSNP
rs1250869361 2226 dbSNP
rs1340087996 2237 dbSNP
rs552969525 2243 dbSNP
rs1269802028 2246 dbSNP
rs985217638 2252 dbSNP
rs1201139029 2255 dbSNP
rs1439038885 2264 dbSNP
rs952054507 2265 dbSNP
rs946025550 2282 dbSNP
rs1034860138 2288 dbSNP
rs891729369 2295 dbSNP
rs1337073968 2302 dbSNP
rs149985900 2316 dbSNP
rs935821174 2317 dbSNP
rs1246452320 2319 dbSNP
rs117836679 2326 dbSNP
rs117358859 2327 dbSNP
rs1448954456 2330 dbSNP
rs944509446 2333 dbSNP
rs7390 2343 dbSNP
rs1363135674 2347 dbSNP
rs1248181932 2348 dbSNP
rs1292584842 2349 dbSNP
rs1408389914 2359 dbSNP
rs1393157686 2361 dbSNP
rs983169023 2363 dbSNP
rs1219624323 2367 dbSNP
rs1164544138 2371 dbSNP
rs950407768 2372 dbSNP
rs115526614 2373 dbSNP
rs1049946830 2376 dbSNP
rs748664928 2395 dbSNP
rs548896687 2397 dbSNP
rs962860014 2398 dbSNP
rs139235612 2400 dbSNP
rs922350316 2409 dbSNP
rs1385285791 2415 dbSNP
rs373183162 2428 dbSNP
rs1040546641 2432 dbSNP
rs1162212493 2434 dbSNP
rs1034514151 2435 dbSNP
rs566258918 2436 dbSNP
rs1470811312 2437 dbSNP
rs1454067399 2441 dbSNP
rs369759775 2445 dbSNP
rs755326705 2448 dbSNP
rs532404500 2449 dbSNP
rs1010255163 2457 dbSNP
rs1435654437 2458 dbSNP
rs1309365013 2463 dbSNP
rs891760516 2465 dbSNP
rs952148697 2466 dbSNP
rs1054379721 2467 dbSNP
rs1000146139 2471 dbSNP
rs900415872 2476 dbSNP
rs1463085753 2481 dbSNP
rs1358419457 2487 dbSNP
rs1243253589 2491 dbSNP
rs1472148914 2494 dbSNP
rs1179768222 2497 dbSNP
rs1289390377 2504 dbSNP
rs1225349886 2505 dbSNP
rs1419299540 2508 dbSNP
rs1374011778 2512 dbSNP
rs1158222116 2513 dbSNP
rs530955951 2516 dbSNP
rs768704434 2518 dbSNP
rs1470941170 2520 dbSNP
rs927277424 2523 dbSNP
rs1440130791 2525 dbSNP
rs1358679910 2531 dbSNP
rs1332968522 2534 dbSNP
rs1299959530 2535 dbSNP
rs980507554 2536 dbSNP
rs971501070 2538 dbSNP
rs1024377698 2545 dbSNP
rs1326047343 2556 dbSNP
rs1224685490 2564 dbSNP
rs1128466 2577 dbSNP
rs1303977503 2591 dbSNP
rs1424308962 2592 dbSNP
rs760981246 2595 dbSNP
rs563759407 2604 dbSNP
rs1207495977 2619 dbSNP
rs145531892 2634 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_ControlB_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gaccccaccCCUGUCUCCGAa 5'
                   ||| ||||||| 
Target 5' ------acaGGA-AGAGGCUg 3'
1 - 14
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_ControlB_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control B
Location of target site ENST00000361716.3 | 3UTR | ACAGgaagaggcugaGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
108 hsa-miR-6819-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT358318 PANK3 pantothenate kinase 3 2 2
MIRT454719 UBQLNL ubiquilin like 2 2
MIRT471362 PEG10 paternally expressed 10 2 2
MIRT478101 DLG5 discs large MAGUK scaffold protein 5 2 4
MIRT495554 GOLGA6L4 golgin A6 family-like 4 2 2
MIRT495587 GOLGA6L10 golgin A6 family-like 10 2 2
MIRT508315 RPL18 ribosomal protein L18 2 4
MIRT529183 ADAM33 ADAM metallopeptidase domain 33 2 2
MIRT532035 FHDC1 FH2 domain containing 1 2 2
MIRT545131 ANXA5 annexin A5 2 2
MIRT567288 HNRNPL heterogeneous nuclear ribonucleoprotein L 2 2
MIRT568094 CEBPG CCAAT/enhancer binding protein gamma 2 2
MIRT573291 DLX4 distal-less homeobox 4 2 2
MIRT575169 Fam120c family with sequence similarity 120, member C 2 2
MIRT609495 DNASE1L3 deoxyribonuclease 1 like 3 2 2
MIRT611264 EHD3 EH domain containing 3 2 2
MIRT613580 POC5 POC5 centriolar protein 2 2
MIRT616520 C9orf170 chromosome 9 open reading frame 170 2 2
MIRT617098 ZNF667 zinc finger protein 667 2 2
MIRT618268 DDX51 DEAD-box helicase 51 2 2
MIRT618294 ZNF682 zinc finger protein 682 2 2
MIRT618617 SHOX short stature homeobox 2 2
MIRT619741 SRFBP1 serum response factor binding protein 1 2 2
MIRT619784 NRIP2 nuclear receptor interacting protein 2 2 2
MIRT621119 SP110 SP110 nuclear body protein 2 2
MIRT622530 RAD51 RAD51 recombinase 2 2
MIRT623088 NME6 NME/NM23 nucleoside diphosphate kinase 6 2 2
MIRT623938 FKBP14 FK506 binding protein 14 2 2
MIRT624389 CD84 CD84 molecule 2 2
MIRT624860 ABI2 abl interactor 2 2 2
MIRT628752 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT632243 VTA1 vesicle trafficking 1 2 2
MIRT632987 E2F2 E2F transcription factor 2 2 2
MIRT633695 RBM43 RNA binding motif protein 43 2 2
MIRT633766 CENPBD1 CENPB DNA-binding domain containing 1 2 2
MIRT633808 ZNF91 zinc finger protein 91 2 2
MIRT638914 CBLN2 cerebellin 2 precursor 2 2
MIRT641298 SLAMF1 signaling lymphocytic activation molecule family member 1 2 2
MIRT642123 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT642179 HEBP2 heme binding protein 2 2 2
MIRT642617 CDKN3 cyclin dependent kinase inhibitor 3 2 2
MIRT643325 TMEM151B transmembrane protein 151B 2 2
MIRT644534 TMEM134 transmembrane protein 134 2 2
MIRT645820 OMA1 OMA1 zinc metallopeptidase 2 2
MIRT646093 MGST3 microsomal glutathione S-transferase 3 2 2
MIRT646861 SLC35E4 solute carrier family 35 member E4 2 2
MIRT647466 DZIP1L DAZ interacting zinc finger protein 1 like 2 2
MIRT647702 NADSYN1 NAD synthetase 1 2 2
MIRT648082 ZMIZ2 zinc finger MIZ-type containing 2 2 2
MIRT648547 TMEM169 transmembrane protein 169 2 2
MIRT648690 AP1M1 adaptor related protein complex 1 mu 1 subunit 2 2
MIRT649747 GNB5 G protein subunit beta 5 2 2
MIRT650154 ZNF426 zinc finger protein 426 2 2
MIRT650450 CPXM2 carboxypeptidase X, M14 family member 2 2 2
MIRT650943 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT651544 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT652304 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT652890 SYVN1 synoviolin 1 2 2
MIRT654222 RNF19B ring finger protein 19B 2 2
MIRT654676 PSMB5 proteasome subunit beta 5 2 2
MIRT658249 FAXC failed axon connections homolog 2 2
MIRT658363 FAM65B RHO family interacting cell polarization regulator 2 2 2
MIRT659622 CELF1 CUGBP Elav-like family member 1 2 2
MIRT660171 BNIP3L BCL2 interacting protein 3 like 2 2
MIRT660634 ANKRD52 ankyrin repeat domain 52 2 2
MIRT662428 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT662984 PAK3 p21 (RAC1) activated kinase 3 2 2
MIRT663939 ZNF554 zinc finger protein 554 2 2
MIRT666960 PKHD1 PKHD1, fibrocystin/polyductin 2 2
MIRT667945 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT668847 CYCS cytochrome c, somatic 2 2
MIRT671792 RGS17 regulator of G protein signaling 17 2 2
MIRT672382 RPL37 ribosomal protein L37 2 2
MIRT673516 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 4
MIRT674716 FAM73A mitoguardin 1 2 2
MIRT676352 KLF8 Kruppel like factor 8 2 2
MIRT677820 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT678440 PDE4C phosphodiesterase 4C 2 2
MIRT678499 ARHGEF39 Rho guanine nucleotide exchange factor 39 2 2
MIRT679243 LRP10 LDL receptor related protein 10 2 2
MIRT693607 SLC39A1 solute carrier family 39 member 1 2 2
MIRT695927 ZNF174 zinc finger protein 174 2 2
MIRT697987 TSPAN6 tetraspanin 6 2 2
MIRT700821 PHLDA2 pleckstrin homology like domain family A member 2 2 2
MIRT701350 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT702348 KLHL7 kelch like family member 7 2 2
MIRT703387 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT703883 ERBB2IP erbb2 interacting protein 2 2
MIRT708237 PPP1R26 protein phosphatase 1 regulatory subunit 26 2 2
MIRT708629 NUDT18 nudix hydrolase 18 2 2
MIRT708990 CABP4 calcium binding protein 4 2 2
MIRT709804 FOXE1 forkhead box E1 2 2
MIRT710203 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT710248 VAMP1 vesicle associated membrane protein 1 2 2
MIRT710281 FGF1 fibroblast growth factor 1 2 2
MIRT712992 IRGQ immunity related GTPase Q 2 2
MIRT713887 MOB3A MOB kinase activator 3A 2 2
MIRT715600 ADAM17 ADAM metallopeptidase domain 17 2 2
MIRT715639 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT715686 FRK fyn related Src family tyrosine kinase 2 2
MIRT717053 WIZ widely interspaced zinc finger motifs 2 2
MIRT717611 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT721539 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT722096 SUSD1 sushi domain containing 1 2 2
MIRT722435 HRNR hornerin 2 2
MIRT722855 NEGR1 neuronal growth regulator 1 2 2
MIRT724621 SNAP25 synaptosome associated protein 25 2 2
MIRT724777 PSG4 pregnancy specific beta-1-glycoprotein 4 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-6819 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6819-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6819-3p Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-6819-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-6819-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-6819-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6819-3p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-6819-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)

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