pre-miRNA Information
pre-miRNA hsa-mir-6819   
Genomic Coordinates chr22: 36286847 - 36286907
Description Homo sapiens miR-6819 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6819-3p
Sequence 41| AAGCCUCUGUCCCCACCCCAG |61
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1279530967 2 dbSNP
rs967579979 3 dbSNP
rs776891214 4 dbSNP
rs771166635 8 dbSNP
rs747037324 9 dbSNP
rs879248090 11 dbSNP
rs1485325191 12 dbSNP
rs778157316 16 dbSNP
Putative Targets

Gene Information
Gene Symbol FGF1   
Synonyms AFGF, ECGF, ECGF-beta, ECGFA, ECGFB, FGF-1, FGF-alpha, FGFA, GLIO703, HBGF-1, HBGF1
Description fibroblast growth factor 1
Transcript NM_033136   
Other Transcripts NM_001144892 , NM_001144934 , NM_001144935 , NM_000800 , NM_033137   
Expression
Putative miRNA Targets on FGF1
3'UTR of FGF1
(miRNA target sites are highlighted)
>FGF1|NM_033136|3'UTR
   1 GGAATGTTTGTTCCTGGAAAGGCTGGAGGAGAACCATTACAACACCTATATATCCAAGAAGCATGCAGAGAAGAATTGGT
  81 TTGTTGGCCTCAAGAAGAATGGGAGCTGCAAACGCGGTCCTCGGACTCACTATGGCCAGAAAGCAATCTTGTTTCTCCCC
 161 CTGCCAGTCTCTTCTGATTAAAGAGATCTGTTCTGGGTGTTGACCACTCCAGAGAAGTTTCGAGGGGTCCTCACCTGGTT
 241 GACCCAAAAATGTTCCCTTGACCATTGGCTGCGCTAACCCCCAGCCCACAGAGCCTGAATTTGTAAGCAACTTGCTTCTA
 321 AATGCCCAGTTCACTTCTTTGCAGAGCCTTTTACCCCTGCACAGTTTAGAACAGAGGGACCAAATTGCTTCTAGGAGTCA
 401 ACTGGCTGGCCAGTCTGGGTCTGGGTTTGGATCTCCAATTGCCTCTTGCAGGCTGAGTCCCTCCATGCAAAAGTGGGGCT
 481 AAATGAAGTGTGTTAAGGGGTCGGCTAAGTGGGACATTAGTAACTGCACACTATTTCCCTCTACTGAGTAAACCCTATCT
 561 GTGATTCCCCCAAACATCTGGCATGGCTCCCTTTTGTCCTTCCTGTGCCCTGCAAATATTAGCAAAGAAGCTTCATGCCA
 641 GGTTAGGAAGGCAGCATTCCATGACCAGAAACAGGGACAAAGAAATCCCCCCTTCAGAACAGAGGCATTTAAAATGGAAA
 721 AGAGAGATTGGATTTTGGTGGGTAACTTAGAAGGATGGCATCTCCATGTAGAATAAATGAAGAAAGGGAGGCCCAGCCGC
 801 AGGAAGGCAGAATAAATCCTTGGGAGTCATTACCACGCCTTGACCTTCCCAAGGTTACTCAGCAGCAGAGAGCCCTGGGT
 881 GACTTCAGGTGGAGAGCACTAGAAGTGGTTTCCTGATAACAAGCAAGGATATCAGAGCTGGGAAATTCATGTGGATCTGG
 961 GGACTGAGTGTGGGAGTGCAGAGAAAGAAAGGGAAACTGGCTGAGGGGATACCATAAAAAGAGGATGATTTCAGAAGGAG
1041 AAGGAAAAAGAAAGTAATGCCACACATTGTGCTTGGCCCCTGGTAAGCAGAGGCTTTGGGGTCCTAGCCCAGTGCTTCTC
1121 CAACACTGAAGTGCTTGCAGATCATCTGGGGACCTGGTTTGAATGGAGATTCTGATTCAGTGGGTTGGGGGCAGAGTTTC
1201 TGCAGTTCCATCAGGTCCCCCCCAGGTGCAGGTGCTGACAATACTGCTGCCTTACCCGCCATACATTAAGGAGCAGGGTC
1281 CTGGTCCTAAAGAGTTATTCAAATGAAGGTGGTTCGACGCCCCGAACCTCACCTGACCTCAACTAACCCTTAAAAATGCA
1361 CACCTCATGAGTCTACCTGAGCATTCAGGCAGCACTGACAATAGTTATGCCTGTACTAAGGAGCATGATTTTAAGAGGCT
1441 TTGGCCCAATGCCTATAAAATGCCCATTTCGAAGATATACAAAAACATACTTCAAAAATGTTAAACCCTTACCAACAGCT
1521 TTTCCCAGGAGACCATTTGTATTACCATTACTTGTATAAATACACTTCCTGCTTAAACTTGACCCAGGTGGCTAGCAAAT
1601 TAGAAACACCATTCATCTCTAACATATGATACTGATGCCATGTAAAGGCCTTTAATAAGTCATTGAAATTTACTGTGAGA
1681 CTGTATGTTTTAATTGCATTTAAAAATATATAGCTTGAAAGCAGTTAAACTGATTAGTATTCAGGCACTGAGAATGATAG
1761 TAATAGGATACAATGTATAAGCTACTCACTTATCTGATACTTATTTACCTATAAAATGAGATTTTTGTTTTCCACTGTGC
1841 TATTACAAATTTTCTTTTGAAAGTAGGAACTCTTAAGCAATGGTAATTGTGAATAAAAATTGATGAGAGTGTTAGCTCCT
1921 GTTTCATATGAAATTGAAGTAATTGTTAACTAAAAACAATTCCTTAGTAACTGAACTGTCATATTTAGAATGGAAGGAAA
2001 ATGACAGTTTGTGAAAGTTCAAAGCAATAGTGCAATTGAAGAATTGACCTAAGTAAGCTGACATTATGGTTAATAATAGT
2081 ATTTTAGATTTGTGCAGCAAAATAATTTCATAACTTTTTTGTTTTTGTTACTTGGATAAGATCAATCTGTTTTATTTTAG
2161 TAAATCTTTGCAGGCAAGTTAGAGAAAATGCAGTGTGGCTTAACGTCTCTTTAGTATGAAGATTTGGCCAGAAAAAGATA
2241 CCCAGAGAGGAAATCTAAGATAATTATAATGGTCCATACTTTTTATTGTATGAATCAAACTCAAGCATAACATTGGCCAA
2321 GGAAAATTAAATACCATTGCTAACTTGTGAAATGGAAGTCTGTGATTTCGGAGATGCAAAGCATTGTAGTAAAAACACCA
2401 ATGTGACCTCGACCATCTCAGCCCAGATATCATTCATATATCTGTTCAATGACTATTAAGGTGCCTACTGTGTGCTAGGC
2481 ACTGTACTGGATACTGGGGACCTTGTCTGTCTGGTTTGCTGCTGTATCTTCTCCCAGGGCATTATATTTATGATGAAAGA
2561 TGCTGTGGATTCAATTCTTTCAGTCAAGAATAAACACAGACTTTGTAGGTTCCTGCTGAATAAAGCAAATCCCAGAAACC
2641 CAGATTTTGGAAGAATCAGCAACCCCAGCATAAAATAAACCCCTATCAAAATGTCAGAGGACATGGCAAGGTAAACTTAG
2721 CATTTTCAACTTTAGAACCGGGTCAGCTTCAGGGGGACTGCTTTCAAATCAGCCAAAGAGCCTGTCAGATCTTCTTAGAA
2801 GGAAGAGGTTGGTAGTTCCCTGCTCTGTTTTGAACATGCTCTAGTTTATTAACCTGGGGACATTCCCATTGCTGTCTTAA
2881 GTAAGTCTCATAGCCAGCTCCTGTCACGTGACTCTCATATGGATTCATTTTCGGGCCAGCTCTGAACAAAGCATCATGAA
2961 CATATGTGCTTTTGGTCGTTTGCAATGTGATGGTGGTGGAGGTAGGTATTGGTTTCCTTGGAAGGCATGATAAGAAAGAT
3041 TCACAATGGCCAACAGTGTGTATGAACAAAAAACTGATTGGAGCATCAGCTAGTACTGAAGGTCCTTGCTTTGTGTCAGA
3121 GGCAAAGGAACCCAAGGCGCCAAGTCCTCAGCCTTGAGTGTACTGCTGACAACTAAACTCACAGGCTGCAAAGCAGACCT
3201 CTGATGAAGATGCCTGTTATTTCACATCACTGTCTTTTTGTGTATCATAGTCTGCACCTTACAAATATTAATAAATGTTC
3281 CAATAATAGGTGAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaccccACCCCU-GUCUCCGAa 5'
                |||  | |||||||| 
Target 5' ggccccTGGTAAGCAGAGGCTt 3'
1075 - 1096 151.00 -17.30
2
miRNA  3' gaccccaccccugUCUCCGAa 5'
                       ||||||| 
Target 5' gagcatgattttaAGAGGCTt 3'
1421 - 1441 140.00 -10.70
3
miRNA  3' gaCCCCACCCCUGUCUCCGAa 5'
            ||| |||||:||||| :| 
Target 5' gtGGGTTGGGGGCAGAGTTTc 3'
1180 - 1200 135.00 -28.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM5964456 1 COSMIC
COSM7562512 1 COSMIC
COSM275164 11 COSMIC
COSM8087808 16 COSMIC
COSM7287755 28 COSMIC
COSM8994537 31 COSMIC
COSM1434817 42 COSMIC
COSM3852317 44 COSMIC
COSM3611837 58 COSMIC
COSM9003866 73 COSMIC
COSM6513430 89 COSMIC
COSM3919212 97 COSMIC
COSM6663460 113 COSMIC
COSM9275789 115 COSMIC
COSM1207046 116 COSMIC
COSM6214944 122 COSMIC
COSM7985820 123 COSMIC
COSM8993845 123 COSMIC
COSM8994651 124 COSMIC
COSM8318478 137 COSMIC
COSM4963324 148 COSMIC
COSM3776388 155 COSMIC
COSM1696450 158 COSMIC
COSM8381649 161 COSMIC
COSM8994242 161 COSMIC
COSM4495384 165 COSMIC
COSM3994079 167 COSMIC
COSM8893397 167 COSMIC
COSN32068518 183 COSMIC
COSN31582357 194 COSMIC
COSN30480983 196 COSMIC
COSN30153460 232 COSMIC
COSN30139123 236 COSMIC
COSN30528685 244 COSMIC
COSN31599772 247 COSMIC
COSN30500328 262 COSMIC
COSN30474656 263 COSMIC
COSN32055778 272 COSMIC
COSN31559147 298 COSMIC
COSN30113662 301 COSMIC
COSN31567870 348 COSMIC
COSN22712026 733 COSMIC
COSN23226947 1506 COSMIC
COSN31485368 1614 COSMIC
COSN21705641 2109 COSMIC
COSN22193305 2514 COSMIC
COSN30431806 2627 COSMIC
COSN20101985 2662 COSMIC
COSN16102423 2760 COSMIC
COSN5021297 2889 COSMIC
COSN23911875 2908 COSMIC
COSN19455929 3138 COSMIC
COSN193222 3272 COSMIC
rs34000 1535 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs769092526 1 dbSNP
rs1389319272 6 dbSNP
rs143011306 8 dbSNP
rs775253006 10 dbSNP
rs373883111 13 dbSNP
rs745432170 16 dbSNP
rs778584449 22 dbSNP
rs1254681607 26 dbSNP
rs1202711739 29 dbSNP
rs770501980 35 dbSNP
rs149033545 46 dbSNP
rs777523983 49 dbSNP
rs561960626 50 dbSNP
rs1271039014 51 dbSNP
rs1244139413 57 dbSNP
rs1338842264 61 dbSNP
rs1357397469 64 dbSNP
rs369740938 65 dbSNP
rs1415333814 66 dbSNP
rs1369677679 67 dbSNP
rs1305923663 68 dbSNP
rs1431455269 70 dbSNP
rs1459153423 73 dbSNP
rs1419776970 76 dbSNP
rs780390744 79 dbSNP
rs376396733 82 dbSNP
rs902995255 87 dbSNP
rs1369712915 88 dbSNP
rs1043307908 91 dbSNP
rs1190163641 93 dbSNP
rs750586330 103 dbSNP
rs765303323 105 dbSNP
rs761839384 107 dbSNP
rs1222942974 108 dbSNP
rs754388820 110 dbSNP
rs764484123 113 dbSNP
rs145843967 114 dbSNP
rs372965702 115 dbSNP
rs759270544 116 dbSNP
rs774109079 119 dbSNP
rs770590235 122 dbSNP
rs146745580 123 dbSNP
rs143888146 130 dbSNP
rs769616526 146 dbSNP
rs748034939 147 dbSNP
rs1322401579 148 dbSNP
rs780860378 151 dbSNP
rs754699487 152 dbSNP
rs746120174 154 dbSNP
rs201277854 156 dbSNP
rs757372975 159 dbSNP
rs764725960 161 dbSNP
rs1162337227 162 dbSNP
rs753037736 162 dbSNP
rs554308959 163 dbSNP
rs141473407 166 dbSNP
rs1198361298 167 dbSNP
rs1450056118 178 dbSNP
rs923410105 183 dbSNP
rs1471997825 185 dbSNP
rs1214389088 188 dbSNP
rs1352650240 189 dbSNP
rs1328663503 193 dbSNP
rs528076675 198 dbSNP
rs1230166988 204 dbSNP
rs974685275 206 dbSNP
rs1303153311 209 dbSNP
rs374849104 210 dbSNP
rs774196838 216 dbSNP
rs1434080738 217 dbSNP
rs116123989 221 dbSNP
rs71640256 222 dbSNP
rs779013111 222 dbSNP
rs1326236799 227 dbSNP
rs755282745 228 dbSNP
rs1334503706 230 dbSNP
rs992382014 234 dbSNP
rs565260747 243 dbSNP
rs960669774 247 dbSNP
rs576884891 264 dbSNP
rs924352891 272 dbSNP
rs564480205 273 dbSNP
rs569945277 276 dbSNP
rs1030982352 278 dbSNP
rs1257160038 287 dbSNP
rs999600958 291 dbSNP
rs192682915 296 dbSNP
rs1466468117 308 dbSNP
rs1426288023 310 dbSNP
rs977596593 318 dbSNP
rs903971983 319 dbSNP
rs1021458937 326 dbSNP
rs774780017 327 dbSNP
rs971186214 336 dbSNP
rs1011787311 337 dbSNP
rs1416786102 340 dbSNP
rs771028996 342 dbSNP
rs1024529001 346 dbSNP
rs780460200 348 dbSNP
rs766571118 355 dbSNP
rs575476572 356 dbSNP
rs17217555 357 dbSNP
rs1016901075 368 dbSNP
rs1006217746 377 dbSNP
rs943955990 378 dbSNP
rs17217562 383 dbSNP
rs1047198588 396 dbSNP
rs1214132193 402 dbSNP
rs1047741253 405 dbSNP
rs1235658794 411 dbSNP
rs781151019 413 dbSNP
rs1280067625 422 dbSNP
rs993962384 423 dbSNP
rs901935697 433 dbSNP
rs919629387 442 dbSNP
rs1040906198 454 dbSNP
rs1474776876 458 dbSNP
rs1191318241 459 dbSNP
rs1259698584 463 dbSNP
rs34002 464 dbSNP
rs948193759 469 dbSNP
rs553349597 472 dbSNP
rs1313011372 473 dbSNP
rs1360947987 477 dbSNP
rs910798864 479 dbSNP
rs1320532980 480 dbSNP
rs1054666230 497 dbSNP
rs935649122 500 dbSNP
rs750797647 502 dbSNP
rs17099029 503 dbSNP
rs978539931 504 dbSNP
rs1303387775 505 dbSNP
rs1314929311 509 dbSNP
rs968081095 519 dbSNP
rs1022769317 527 dbSNP
rs971518742 530 dbSNP
rs917007567 547 dbSNP
rs1403122042 553 dbSNP
rs1247954676 558 dbSNP
rs1467040533 562 dbSNP
rs899645756 570 dbSNP
rs1380919490 573 dbSNP
rs1156612869 578 dbSNP
rs1329643679 580 dbSNP
rs1018144880 581 dbSNP
rs139893411 583 dbSNP
rs1324217707 587 dbSNP
rs958561852 589 dbSNP
rs1396769274 590 dbSNP
rs1438884318 596 dbSNP
rs535587634 607 dbSNP
rs1350673168 610 dbSNP
rs984014520 623 dbSNP
rs1241561412 626 dbSNP
rs145998878 681 dbSNP
rs568296284 687 dbSNP
rs1422098985 693 dbSNP
rs1228549845 696 dbSNP
rs1274728153 700 dbSNP
rs1413226113 704 dbSNP
rs1332030297 721 dbSNP
rs1026700828 722 dbSNP
rs891087775 728 dbSNP
rs1440194521 732 dbSNP
rs112585313 744 dbSNP
rs17217583 751 dbSNP
rs901924630 753 dbSNP
rs1019064414 754 dbSNP
rs898171891 755 dbSNP
rs1007671279 760 dbSNP
rs1473035753 765 dbSNP
rs889308666 766 dbSNP
rs1420343698 769 dbSNP
rs1223372431 777 dbSNP
rs1164331934 786 dbSNP
rs1401610573 792 dbSNP
rs1472815334 795 dbSNP
rs762330539 798 dbSNP
rs528416065 799 dbSNP
rs1327204727 801 dbSNP
rs947828255 802 dbSNP
rs1449305581 806 dbSNP
rs1294716306 807 dbSNP
rs936226298 810 dbSNP
rs1353236355 818 dbSNP
rs17223961 820 dbSNP
rs1258145068 823 dbSNP
rs1341331021 824 dbSNP
rs1240242639 836 dbSNP
rs552158084 839 dbSNP
rs1056590061 845 dbSNP
rs532060489 858 dbSNP
rs939605578 865 dbSNP
rs924151052 870 dbSNP
rs774941726 894 dbSNP
rs771577725 895 dbSNP
rs759132904 896 dbSNP
rs1474351814 897 dbSNP
rs1187260272 899 dbSNP
rs1424452394 903 dbSNP
rs1041735918 908 dbSNP
rs949785425 915 dbSNP
rs1463633302 916 dbSNP
rs1166630358 926 dbSNP
rs916977392 932 dbSNP
rs1415385816 936 dbSNP
rs968425886 941 dbSNP
rs1353141800 949 dbSNP
rs2278688 954 dbSNP
rs1391173594 959 dbSNP
rs937092006 964 dbSNP
rs17223975 966 dbSNP
rs964820234 973 dbSNP
rs1345646073 976 dbSNP
rs983964052 977 dbSNP
rs1212672473 978 dbSNP
rs951239057 996 dbSNP
rs17223982 1003 dbSNP
rs529486926 1007 dbSNP
rs1365222745 1021 dbSNP
rs1210410972 1022 dbSNP
rs1262741096 1027 dbSNP
rs1430375616 1028 dbSNP
rs1008025448 1036 dbSNP
rs1159260715 1037 dbSNP
rs1421606190 1038 dbSNP
rs1382085368 1041 dbSNP
rs972468179 1053 dbSNP
rs562348519 1061 dbSNP
rs966101992 1063 dbSNP
rs1268221842 1069 dbSNP
rs561967853 1084 dbSNP
rs1418259755 1090 dbSNP
rs187799206 1093 dbSNP
rs1019430955 1094 dbSNP
rs1007573490 1095 dbSNP
rs1386761403 1101 dbSNP
rs1379967654 1104 dbSNP
rs1317025868 1109 dbSNP
rs1267859807 1112 dbSNP
rs955241697 1114 dbSNP
rs1192735012 1124 dbSNP
rs1236432422 1131 dbSNP
rs569793378 1147 dbSNP
rs1267744637 1153 dbSNP
rs994115562 1168 dbSNP
rs145230125 1173 dbSNP
rs573491328 1176 dbSNP
rs1211698129 1180 dbSNP
rs1486977887 1182 dbSNP
rs1000320771 1188 dbSNP
rs1261160734 1190 dbSNP
rs1469005176 1191 dbSNP
rs1196020307 1192 dbSNP
rs1393879575 1193 dbSNP
rs903429659 1196 dbSNP
rs1454098458 1201 dbSNP
rs1355313635 1202 dbSNP
rs1284464810 1208 dbSNP
rs553046259 1215 dbSNP
rs1037550317 1216 dbSNP
rs949738472 1217 dbSNP
rs17217590 1218 dbSNP
rs895506301 1221 dbSNP
rs1390797180 1222 dbSNP
rs1055483038 1223 dbSNP
rs1011941616 1224 dbSNP
rs1370228246 1231 dbSNP
rs894935389 1233 dbSNP
rs142078774 1241 dbSNP
rs41124 1244 dbSNP
rs1056146908 1246 dbSNP
rs941466883 1254 dbSNP
rs17217597 1257 dbSNP
rs924147551 1258 dbSNP
rs554336733 1261 dbSNP
rs947014111 1276 dbSNP
rs929862036 1278 dbSNP
rs918488376 1280 dbSNP
rs915214983 1285 dbSNP
rs1417753358 1292 dbSNP
rs537570417 1302 dbSNP
rs965695629 1304 dbSNP
rs1157875024 1305 dbSNP
rs974776097 1308 dbSNP
rs1462545153 1312 dbSNP
rs1162184702 1313 dbSNP
rs753331589 1315 dbSNP
rs986099647 1316 dbSNP
rs568232740 1318 dbSNP
rs953422763 1319 dbSNP
rs1390676646 1323 dbSNP
rs1033094766 1324 dbSNP
rs1378136862 1325 dbSNP
rs1235143772 1332 dbSNP
rs777450370 1333 dbSNP
rs17217604 1343 dbSNP
rs1334714832 1345 dbSNP
rs1205809550 1346 dbSNP
rs1253635669 1347 dbSNP
rs534873152 1360 dbSNP
rs1479859793 1367 dbSNP
rs1177046792 1368 dbSNP
rs1257705625 1377 dbSNP
rs1475984824 1378 dbSNP
rs1185102115 1384 dbSNP
rs1416550334 1389 dbSNP
rs1025498082 1395 dbSNP
rs967600395 1399 dbSNP
rs994476961 1400 dbSNP
rs1352752848 1402 dbSNP
rs1020936833 1404 dbSNP
rs1014481041 1405 dbSNP
rs78257478 1407 dbSNP
rs1376251223 1408 dbSNP
rs1055429598 1412 dbSNP
rs1001241390 1417 dbSNP
rs34001 1437 dbSNP
rs1354867067 1454 dbSNP
rs1483827492 1456 dbSNP
rs761110393 1471 dbSNP
rs929783372 1474 dbSNP
rs59014099 1480 dbSNP
rs1034704886 1487 dbSNP
rs1003315301 1494 dbSNP
rs1041287415 1506 dbSNP
rs943932917 1507 dbSNP
rs753054937 1509 dbSNP
rs1187781286 1511 dbSNP
rs748097101 1511 dbSNP
rs1427882406 1527 dbSNP
rs569580970 1529 dbSNP
rs953412914 1531 dbSNP
rs926025172 1533 dbSNP
rs34000 1535 dbSNP
rs1396687173 1544 dbSNP
rs967885358 1551 dbSNP
rs1402802259 1554 dbSNP
rs1020417176 1561 dbSNP
rs1431497429 1563 dbSNP
rs529757070 1578 dbSNP
rs943322799 1578 dbSNP
rs1228336217 1582 dbSNP
rs1304867283 1583 dbSNP
rs1350502971 1586 dbSNP
rs1232636659 1595 dbSNP
rs1279097412 1603 dbSNP
rs1447226622 1608 dbSNP
rs561907876 1610 dbSNP
rs1239883382 1611 dbSNP
rs1485287883 1613 dbSNP
rs1194149503 1614 dbSNP
rs987533924 1619 dbSNP
rs542022817 1620 dbSNP
rs929434421 1624 dbSNP
rs1468008764 1626 dbSNP
rs960276487 1630 dbSNP
rs1401532781 1636 dbSNP
rs918406985 1641 dbSNP
rs757002483 1646 dbSNP
rs112939431 1653 dbSNP
rs528727010 1655 dbSNP
rs1327155192 1663 dbSNP
rs760035567 1670 dbSNP
rs888138240 1673 dbSNP
rs558510755 1674 dbSNP
rs776627640 1675 dbSNP
rs774691952 1683 dbSNP
rs1274666865 1685 dbSNP
rs33999 1687 dbSNP
rs1225092530 1690 dbSNP
rs17224003 1701 dbSNP
rs1281756093 1702 dbSNP
rs896902475 1706 dbSNP
rs1040843167 1707 dbSNP
rs141826868 1709 dbSNP
rs1034673800 1716 dbSNP
rs1254748555 1727 dbSNP
rs1467087057 1729 dbSNP
rs17224010 1740 dbSNP
rs1233263662 1750 dbSNP
rs1471065329 1758 dbSNP
rs557412026 1762 dbSNP
rs1179134876 1774 dbSNP
rs902295668 1775 dbSNP
rs1199290046 1782 dbSNP
rs1456723891 1786 dbSNP
rs1461133112 1789 dbSNP
rs1165756772 1804 dbSNP
rs17217618 1812 dbSNP
rs1200953876 1820 dbSNP
rs1011040976 1822 dbSNP
rs574993539 1830 dbSNP
rs1269888668 1832 dbSNP
rs1339115233 1832 dbSNP
rs979179491 1835 dbSNP
rs946114242 1837 dbSNP
rs1233291086 1841 dbSNP
rs1274536234 1847 dbSNP
rs1332523591 1854 dbSNP
rs148171786 1858 dbSNP
rs943625418 1859 dbSNP
rs1314745743 1863 dbSNP
rs993005265 1873 dbSNP
rs960225942 1878 dbSNP
rs1202204781 1887 dbSNP
rs1034583798 1893 dbSNP
rs1188690046 1895 dbSNP
rs1420088065 1900 dbSNP
rs980328178 1900 dbSNP
rs550004159 1909 dbSNP
rs1051798583 1917 dbSNP
rs370986462 1928 dbSNP
rs952956210 1929 dbSNP
rs929377498 1931 dbSNP
rs1411946177 1934 dbSNP
rs17217625 1937 dbSNP
rs994240022 1941 dbSNP
rs1415039347 1943 dbSNP
rs896898701 1944 dbSNP
rs1331713995 1948 dbSNP
rs941176694 1954 dbSNP
rs369483791 1960 dbSNP
rs746950235 1981 dbSNP
rs1467006131 1995 dbSNP
rs1019816225 2005 dbSNP
rs535392896 2010 dbSNP
rs1273681269 2017 dbSNP
rs1167032582 2020 dbSNP
rs990681084 2030 dbSNP
rs143217395 2033 dbSNP
rs1034641333 2041 dbSNP
rs1369750249 2044 dbSNP
rs183146703 2049 dbSNP
rs1186948259 2052 dbSNP
rs17217632 2069 dbSNP
rs903782902 2078 dbSNP
rs1239331196 2080 dbSNP
rs1043060365 2092 dbSNP
rs1476692022 2093 dbSNP
rs1166462943 2097 dbSNP
rs966781594 2105 dbSNP
rs1435770947 2107 dbSNP
rs946074539 2113 dbSNP
rs1436495392 2114 dbSNP
rs1272519477 2121 dbSNP
rs1377417026 2123 dbSNP
rs1210713558 2127 dbSNP
rs1318447451 2128 dbSNP
rs1358766570 2130 dbSNP
rs567902830 2140 dbSNP
rs1171798161 2142 dbSNP
rs1328082152 2146 dbSNP
rs1225126368 2152 dbSNP
rs993346970 2155 dbSNP
rs1381877118 2168 dbSNP
rs1348321880 2176 dbSNP
rs938769075 2178 dbSNP
rs1282665127 2181 dbSNP
rs1343139544 2182 dbSNP
rs1199902782 2195 dbSNP
rs1448713821 2198 dbSNP
rs927418647 2204 dbSNP
rs1448860501 2205 dbSNP
rs980276216 2213 dbSNP
rs1248019594 2214 dbSNP
rs1454968866 2218 dbSNP
rs1175927029 2223 dbSNP
rs1327744314 2225 dbSNP
rs952899245 2228 dbSNP
rs1027685941 2233 dbSNP
rs1465257412 2236 dbSNP
rs1158839346 2242 dbSNP
rs529695734 2249 dbSNP
rs536416743 2252 dbSNP
rs567020408 2256 dbSNP
rs1380094833 2273 dbSNP
rs1319795358 2278 dbSNP
rs567768909 2308 dbSNP
rs149068606 2311 dbSNP
rs778598674 2315 dbSNP
rs1301019800 2319 dbSNP
rs4912868 2323 dbSNP
rs889544851 2335 dbSNP
rs1161012257 2336 dbSNP
rs897835353 2337 dbSNP
rs753342061 2339 dbSNP
rs1000694513 2344 dbSNP
rs1232615833 2352 dbSNP
rs942145343 2364 dbSNP
rs750754185 2369 dbSNP
rs10055258 2370 dbSNP
rs1267056579 2375 dbSNP
rs1054919327 2388 dbSNP
rs1042727878 2390 dbSNP
rs946052149 2393 dbSNP
rs937929048 2395 dbSNP
rs1354590582 2410 dbSNP
rs1286611575 2413 dbSNP
rs927845764 2420 dbSNP
rs982445593 2426 dbSNP
rs777162515 2448 dbSNP
rs1462967826 2449 dbSNP
rs1323864405 2460 dbSNP
rs1057147352 2467 dbSNP
rs938716926 2469 dbSNP
rs927361480 2470 dbSNP
rs1044577983 2471 dbSNP
rs931501569 2472 dbSNP
rs1332447136 2481 dbSNP
rs1382095372 2484 dbSNP
rs546448946 2487 dbSNP
rs1216067335 2491 dbSNP
rs1403758969 2493 dbSNP
rs1360658839 2502 dbSNP
rs1488352145 2516 dbSNP
rs1299520051 2518 dbSNP
rs1399423161 2524 dbSNP
rs957805735 2526 dbSNP
rs973417605 2537 dbSNP
rs1180765761 2544 dbSNP
rs556184887 2545 dbSNP
rs961667553 2556 dbSNP
rs1162588982 2561 dbSNP
rs1173461401 2565 dbSNP
rs912183913 2572 dbSNP
rs986436670 2590 dbSNP
rs1372593149 2600 dbSNP
rs953794600 2604 dbSNP
rs1028063466 2608 dbSNP
rs1000642371 2622 dbSNP
rs1007690410 2644 dbSNP
rs527769323 2645 dbSNP
rs968311258 2653 dbSNP
rs765552224 2655 dbSNP
rs374483190 2662 dbSNP
rs397702956 2663 dbSNP
rs17224024 2667 dbSNP
rs1020806324 2668 dbSNP
rs754357784 2669 dbSNP
rs1030556032 2671 dbSNP
rs1445145828 2672 dbSNP
rs532709555 2673 dbSNP
rs764644155 2678 dbSNP
rs1219578782 2680 dbSNP
rs563632049 2681 dbSNP
rs1325469913 2683 dbSNP
rs756624321 2686 dbSNP
rs1486357467 2698 dbSNP
rs897808643 2700 dbSNP
rs1457425656 2701 dbSNP
rs1280943372 2702 dbSNP
rs896413824 2705 dbSNP
rs1388059672 2707 dbSNP
rs1057118963 2711 dbSNP
rs1002911783 2720 dbSNP
rs1307641988 2729 dbSNP
rs1006255047 2730 dbSNP
rs543839381 2738 dbSNP
rs1222465692 2739 dbSNP
rs1340776294 2740 dbSNP
rs1379018148 2743 dbSNP
rs894604833 2744 dbSNP
rs905936706 2751 dbSNP
rs1044527092 2755 dbSNP
rs1055807974 2759 dbSNP
rs931479125 2778 dbSNP
rs927805110 2781 dbSNP
rs1349601465 2787 dbSNP
rs1046293453 2792 dbSNP
rs945314626 2793 dbSNP
rs753241362 2796 dbSNP
rs913560251 2800 dbSNP
rs1246178137 2803 dbSNP
rs1448588791 2808 dbSNP
rs17224031 2811 dbSNP
rs759014367 2819 dbSNP
rs555089327 2825 dbSNP
rs912816231 2836 dbSNP
rs1174281448 2839 dbSNP
rs986421828 2840 dbSNP
rs985889146 2843 dbSNP
rs953742758 2845 dbSNP
rs920995353 2848 dbSNP
rs1323118208 2853 dbSNP
rs979129505 2856 dbSNP
rs1030941704 2857 dbSNP
rs1176193582 2862 dbSNP
rs551356625 2869 dbSNP
rs1426058487 2876 dbSNP
rs1021175505 2881 dbSNP
rs1217087913 2882 dbSNP
rs1277564386 2884 dbSNP
rs1316977179 2887 dbSNP
rs1009407702 2900 dbSNP
rs1266096767 2905 dbSNP
rs531884306 2906 dbSNP
rs759947308 2907 dbSNP
rs17099022 2908 dbSNP
rs1210785281 2916 dbSNP
rs1254622701 2922 dbSNP
rs766571572 2923 dbSNP
rs17224045 2932 dbSNP
rs773272684 2933 dbSNP
rs1260977293 2936 dbSNP
rs1401294976 2938 dbSNP
rs62382130 2939 dbSNP
rs4440401 2942 dbSNP
rs1044436077 2947 dbSNP
rs769754350 2955 dbSNP
rs1387037027 2957 dbSNP
rs995968664 2961 dbSNP
rs1318099748 2963 dbSNP
rs1327214991 2966 dbSNP
rs898588981 2969 dbSNP
rs1434839322 2974 dbSNP
rs370765374 2976 dbSNP
rs755386094 2977 dbSNP
rs558491807 2978 dbSNP
rs538886886 2986 dbSNP
rs193167271 2987 dbSNP
rs1285280244 2988 dbSNP
rs556086885 2989 dbSNP
rs1275045150 2990 dbSNP
rs892336489 3001 dbSNP
rs1220569534 3014 dbSNP
rs1053709760 3018 dbSNP
rs932922123 3021 dbSNP
rs1466487005 3023 dbSNP
rs1402715801 3024 dbSNP
rs761943239 3025 dbSNP
rs1168649028 3031 dbSNP
rs1166273558 3032 dbSNP
rs1416613430 3032 dbSNP
rs910239801 3040 dbSNP
rs985861366 3042 dbSNP
rs920898844 3044 dbSNP
rs188253591 3045 dbSNP
rs923457914 3049 dbSNP
rs972682419 3057 dbSNP
rs962238594 3066 dbSNP
rs1241210812 3074 dbSNP
rs1285818275 3078 dbSNP
rs1354167674 3079 dbSNP
rs1182736368 3083 dbSNP
rs946417386 3087 dbSNP
rs771135391 3099 dbSNP
rs371405893 3102 dbSNP
rs1016895823 3103 dbSNP
rs1483938213 3103 dbSNP
rs1249966639 3104 dbSNP
rs566958099 3115 dbSNP
rs1482738792 3124 dbSNP
rs1188752218 3128 dbSNP
rs368732568 3138 dbSNP
rs17217646 3139 dbSNP
rs775388010 3140 dbSNP
rs1163242322 3152 dbSNP
rs960602189 3159 dbSNP
rs1202067234 3164 dbSNP
rs1034919251 3170 dbSNP
rs1166316239 3172 dbSNP
rs1306586040 3187 dbSNP
rs980661798 3189 dbSNP
rs1414796638 3208 dbSNP
rs969308352 3213 dbSNP
rs566227979 3219 dbSNP
rs1002904565 3223 dbSNP
rs907319579 3224 dbSNP
rs772039892 3234 dbSNP
rs1225919071 3240 dbSNP
rs1009778725 3244 dbSNP
rs1272669083 3247 dbSNP
rs1315041499 3250 dbSNP
rs995523562 3255 dbSNP
rs892311223 3262 dbSNP
rs1447937814 3268 dbSNP
rs1258327139 3281 dbSNP
rs1440811715 3286 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B HITS-CLIP data was present in Chi_ControlB_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000360966.5 | 3UTR | AGAGGCUUUGGGGUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000360966.5 | 3UTR | AGAGGCUUUGGGGUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset Chi_ControlB_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control B
Location of target site ENST00000360966.5 | 3UTR | AGAGGCUUUGGGGUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
108 hsa-miR-6819-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT358318 PANK3 pantothenate kinase 3 2 2
MIRT454719 UBQLNL ubiquilin like 2 2
MIRT471362 PEG10 paternally expressed 10 2 2
MIRT478101 DLG5 discs large MAGUK scaffold protein 5 2 4
MIRT495554 GOLGA6L4 golgin A6 family-like 4 2 2
MIRT495587 GOLGA6L10 golgin A6 family-like 10 2 2
MIRT508315 RPL18 ribosomal protein L18 2 4
MIRT529183 ADAM33 ADAM metallopeptidase domain 33 2 2
MIRT532035 FHDC1 FH2 domain containing 1 2 2
MIRT545131 ANXA5 annexin A5 2 2
MIRT567288 HNRNPL heterogeneous nuclear ribonucleoprotein L 2 2
MIRT568094 CEBPG CCAAT/enhancer binding protein gamma 2 2
MIRT573291 DLX4 distal-less homeobox 4 2 2
MIRT575169 Fam120c family with sequence similarity 120, member C 2 2
MIRT609495 DNASE1L3 deoxyribonuclease 1 like 3 2 2
MIRT611264 EHD3 EH domain containing 3 2 2
MIRT613580 POC5 POC5 centriolar protein 2 2
MIRT616520 C9orf170 chromosome 9 open reading frame 170 2 2
MIRT617098 ZNF667 zinc finger protein 667 2 2
MIRT618268 DDX51 DEAD-box helicase 51 2 2
MIRT618294 ZNF682 zinc finger protein 682 2 2
MIRT618617 SHOX short stature homeobox 2 2
MIRT619741 SRFBP1 serum response factor binding protein 1 2 2
MIRT619784 NRIP2 nuclear receptor interacting protein 2 2 2
MIRT621119 SP110 SP110 nuclear body protein 2 2
MIRT622530 RAD51 RAD51 recombinase 2 2
MIRT623088 NME6 NME/NM23 nucleoside diphosphate kinase 6 2 2
MIRT623938 FKBP14 FK506 binding protein 14 2 2
MIRT624389 CD84 CD84 molecule 2 2
MIRT624860 ABI2 abl interactor 2 2 2
MIRT628752 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT632243 VTA1 vesicle trafficking 1 2 2
MIRT632987 E2F2 E2F transcription factor 2 2 2
MIRT633695 RBM43 RNA binding motif protein 43 2 2
MIRT633766 CENPBD1 CENPB DNA-binding domain containing 1 2 2
MIRT633808 ZNF91 zinc finger protein 91 2 2
MIRT638914 CBLN2 cerebellin 2 precursor 2 2
MIRT641298 SLAMF1 signaling lymphocytic activation molecule family member 1 2 2
MIRT642123 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT642179 HEBP2 heme binding protein 2 2 2
MIRT642617 CDKN3 cyclin dependent kinase inhibitor 3 2 2
MIRT643325 TMEM151B transmembrane protein 151B 2 2
MIRT644534 TMEM134 transmembrane protein 134 2 2
MIRT645820 OMA1 OMA1 zinc metallopeptidase 2 2
MIRT646093 MGST3 microsomal glutathione S-transferase 3 2 2
MIRT646861 SLC35E4 solute carrier family 35 member E4 2 2
MIRT647466 DZIP1L DAZ interacting zinc finger protein 1 like 2 2
MIRT647702 NADSYN1 NAD synthetase 1 2 2
MIRT648082 ZMIZ2 zinc finger MIZ-type containing 2 2 2
MIRT648547 TMEM169 transmembrane protein 169 2 2
MIRT648690 AP1M1 adaptor related protein complex 1 mu 1 subunit 2 2
MIRT649747 GNB5 G protein subunit beta 5 2 2
MIRT650154 ZNF426 zinc finger protein 426 2 2
MIRT650450 CPXM2 carboxypeptidase X, M14 family member 2 2 2
MIRT650943 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT651544 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT652304 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT652890 SYVN1 synoviolin 1 2 2
MIRT654222 RNF19B ring finger protein 19B 2 2
MIRT654676 PSMB5 proteasome subunit beta 5 2 2
MIRT658249 FAXC failed axon connections homolog 2 2
MIRT658363 FAM65B RHO family interacting cell polarization regulator 2 2 2
MIRT659622 CELF1 CUGBP Elav-like family member 1 2 2
MIRT660171 BNIP3L BCL2 interacting protein 3 like 2 2
MIRT660634 ANKRD52 ankyrin repeat domain 52 2 2
MIRT662428 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT662984 PAK3 p21 (RAC1) activated kinase 3 2 2
MIRT663939 ZNF554 zinc finger protein 554 2 2
MIRT666960 PKHD1 PKHD1, fibrocystin/polyductin 2 2
MIRT667945 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT668847 CYCS cytochrome c, somatic 2 2
MIRT671792 RGS17 regulator of G protein signaling 17 2 2
MIRT672382 RPL37 ribosomal protein L37 2 2
MIRT673516 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 4
MIRT674716 FAM73A mitoguardin 1 2 2
MIRT676352 KLF8 Kruppel like factor 8 2 2
MIRT677820 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT678440 PDE4C phosphodiesterase 4C 2 2
MIRT678499 ARHGEF39 Rho guanine nucleotide exchange factor 39 2 2
MIRT679243 LRP10 LDL receptor related protein 10 2 2
MIRT693607 SLC39A1 solute carrier family 39 member 1 2 2
MIRT695927 ZNF174 zinc finger protein 174 2 2
MIRT697987 TSPAN6 tetraspanin 6 2 2
MIRT700821 PHLDA2 pleckstrin homology like domain family A member 2 2 2
MIRT701350 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT702348 KLHL7 kelch like family member 7 2 2
MIRT703387 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT703883 ERBB2IP erbb2 interacting protein 2 2
MIRT708237 PPP1R26 protein phosphatase 1 regulatory subunit 26 2 2
MIRT708629 NUDT18 nudix hydrolase 18 2 2
MIRT708990 CABP4 calcium binding protein 4 2 2
MIRT709804 FOXE1 forkhead box E1 2 2
MIRT710203 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT710248 VAMP1 vesicle associated membrane protein 1 2 2
MIRT710281 FGF1 fibroblast growth factor 1 2 2
MIRT712992 IRGQ immunity related GTPase Q 2 2
MIRT713887 MOB3A MOB kinase activator 3A 2 2
MIRT715600 ADAM17 ADAM metallopeptidase domain 17 2 2
MIRT715639 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT715686 FRK fyn related Src family tyrosine kinase 2 2
MIRT717053 WIZ widely interspaced zinc finger motifs 2 2
MIRT717611 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT721539 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT722096 SUSD1 sushi domain containing 1 2 2
MIRT722435 HRNR hornerin 2 2
MIRT722855 NEGR1 neuronal growth regulator 1 2 2
MIRT724621 SNAP25 synaptosome associated protein 25 2 2
MIRT724777 PSG4 pregnancy specific beta-1-glycoprotein 4 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-6819 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6819-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6819-3p Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-6819-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-6819-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-6819-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6819-3p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-6819-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)

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