pre-miRNA Information
pre-miRNA hsa-mir-4749   
Genomic Coordinates chr19: 49854591 - 49854651
Description Homo sapiens miR-4749 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4749-3p
Sequence 42| CGCCCCUCCUGCCCCCACAG |61
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN19730808 2 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs147943327 1 dbSNP
rs148982635 2 dbSNP
rs372882504 3 dbSNP
rs200056596 4 dbSNP
rs570340094 5 dbSNP
rs778438436 11 dbSNP
rs748573000 13 dbSNP
rs770230641 14 dbSNP
rs201103722 16 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol IFNLR1   
Synonyms CRF2/12, IFNLR, IL-28R1, IL28RA, LICR2
Description interferon lambda receptor 1
Transcript NM_173065   
Other Transcripts NM_173064 , NM_170743   
Expression
Putative miRNA Targets on IFNLR1
3'UTR of IFNLR1
(miRNA target sites are highlighted)
>IFNLR1|NM_173065|3'UTR
   1 CTTGTTCCTCTGTCCCCAAAAGGAACTGACCAGAGGGGTCAGGCCGACGCCTCGAGTCAGGGCCCCAGCCACCCAACAGA
  81 CAAGATGGAAGAAGGACCTTGCAGAGGACGAAGAGGAGGAGGATGAGGAGGACACAGAAGATGGCGTCAGCTTCCAGCCC
 161 TACATTGAACCACCTTCTTTCCTGGGGCAAGAGCACCAGGCTCCAGGGCACTCGGAGGCTGGTGGGGTGGACTCAGGGAG
 241 GCCCAGGGCTCCTCTGGTCCCAAGCGAAGGCTCCTCTGCTTGGGATTCTTCAGACAGAAGCTGGGCCAGCACTGTGGACT
 321 CCTCCTGGGACAGGGCTGGGTCCTCTGGCTATTTGGCTGAGAAGGGGCCAGGCCAAGGGCCGGGTGGGGATGGGCACCAA
 401 GAATCTCTCCCACCACCTGAATTCTCCAAGGACTCGGGTTTCCTGGAAGAGCTCCCAGAAGATAACCTCTCCTCCTGGGC
 481 CACCTGGGGCACCTTACCACCGGAGCCGAATCTGGTCCCTGGGGGACCCCCAGTTTCTCTTCAGACACTGACCTTCTGCT
 561 GGGAAAGCAGCCCTGAGGAGGAAGAGGAGGCGAGGGAATCAGAAATTGAGGACAGCGATGCGGGCAGCTGGGGGGCTGAG
 641 AGCACCCAGAGGACCGAGGACAGGGGCCGGACATTGGGGCATTACATGGCCAGGTGAGCTGTCCCCCGACATCCCACCGA
 721 ATCTGATGCTGCTGCTGCCTTTGCAAGGACTACTGGGCTTCCCAAGAAACTCAAGAGCCTCCGTACCTCCCCTGGGCGGC
 801 GGAGGGGCATTGCACTTCCGGGAAGTCCACCTAGCGGCTGTTTGCCTGTCGGGCTGAGCAACAAGATGCCCCTCCCTCCT
 881 GTGACCCGCCCTCTTTAGGCTGAGCTATAAGAGGGGTGGACACAGGGTGGGCTGAGGTCAGAGGTTGGTGGGGTGTCATC
 961 ACCCCCATTGTCCCTAGGGTGACAGGCCAGGGGGAAAAATTATCCCCGGACAACATGAAACAGGTGAGGTCAGGTCACTG
1041 CGGACATCAAGGGCGGACACCACCAAGGGGCCCTCTGGAACTTGAGACCACTGGAGGCACACCTGCTATACCTCATGCCT
1121 TTCCCAGCAGCCACTGAACTCCCCCATCCCAGGGCTCAGCCTCCTGATTCATGGGTCCCCTAGTTAGGCCCAGATAAAAA
1201 TCCAGTTGGCTGAGGGTTTTGGATGGGAAGGGAAGGGTGGCTGTCCTCAAATCCTGGTCTTTGGAGTCATGGCACTGTAC
1281 GGTTTTAGTGTCAGACAGACCGGGGTTCAAATCCCAGCTCTGCTGTTCACTGGTTGTATGATCTTGGGGAAGACATCTTC
1361 CTTCTCTGCCTCGGCTTCCTCATCTGCAGCTACGCCTGGGTGTGGTGAGGGTTCTAGGGGATCTCAGATGTGTGTAGCAC
1441 GGAGCCTGCTGTGTCCTGGGTGCTCTCTACGTGGTGGCCGGTAGAATTCTCCATCTATCCAGGCTCCAGGAGACCCCTGG
1521 GCATCTCCCACCTGTGGCCCCTAAACCCAGAGTGACTGAGAGCACTTAACATTCAGCTTGTCTCATCCCCAGTCTACCTC
1601 CTTCCTTCTACCCTCACTGCCTCCCAGTCAGGAGAGTGAGCTCTCAGAAGCCAGAGCCCCACCCAAGGGGACCCTGGTCT
1681 CTCCGCCTTCACCTAGCAATGGGAACCCTGCTTCCCAGGGGAGGAACCAACTGCTCCACCTTCTAGGGACCCAGTTTGTT
1761 GGAGTAGGACAGTAACATGGCAGGAATCGGACTTCTGGGCCTGTAATCCCAGTTTGGATGGCACGTTAGACTCTTGGTTG
1841 ACCGTTGTGGTCCTTAGAAGTCCCATTCTCCCTTCCAGTTATGAGAAACCAATGCCTTCTAGATTCAGGTGACTATCCTT
1921 ACCTGGGGGTGCTGATGCATCCTCAGTTAACCTACACCCACCTGAATATAGATGAGCGTAGCTGAGTTTTCACCCGTAGG
2001 ACCGAAGTGTTTTGTGGTGGAGTATCTGAACAACCTTGGCTCTGTGGCCATTCAACCTGCCAGGACTAACATTTCTGGAT
2081 TTGTGAAGAAGGGATCTTCAAAGCCATTGAACCCACAGAGCTGTGTTGCTTTAAAGCCACCACAAGGGTACAGCATTAAA
2161 TGGCAGAACTGGAAAAGCTTCTTAGGGCATCTCATCCAGGGATTCTCAAACCATGTCCCCCAGAGGCCTTGGGCTGCAGT
2241 TGCAGGGGGCGCCATGGGGCTATAGGAGCCTCCCACTTTCACCAGAGCAGCCTCACTGTGCCCTGATTCACACACTGTGG
2321 CTTTCCACGTGAGGTTTTGTTTAGAGGGATCCACTACTCAAGAAAAAGTTAGCAAACCACTCCTTTTGTTGCAAAGGAGC
2401 TGAGGTCAAGGGTGGCAAAGGCACTTGTCCAAGGTCGCCCAGCAGTGCTGCTCTGATGACTTGTGCACATCCCCAAGGGT
2481 AAGAGCTTCGATCTCTGCACAGCCGGGCCAACCTCTGACCCCTTGTCCATGTCAGTAAAATATGAAGGTCACAGCCAGGA
2561 TTTCTAAGGGTCAGGAGGCCTTCACCGCTGCTGGGGCACACACACACACATGCATACACACATACGACACACACCTGTGT
2641 CTCCCCAGGGGTTTTCCCTGCAGTGAGGCTTGTCCAGATGATTGAGCCCAGGAGAGGAAGAACAAACAAACTACGGAGCT
2721 GGGGAGGGCTGTGGCTTGGGGCCAGCTCCCAGGGAAATTCCCAGACCTGTACCGATGTTCTCTCTGGCACCAGCCGAGCT
2801 GCTTCGTGGAGGTAACTTCAAAAAAGTAAAAGCTATCATCAGCATCATCTTAGACTTGTATGAAATAACCACTCCGTTTC
2881 TATTCTTAAACCTTACCATTTTTGTTTTGTTTTGTTTTTTTGAGTCGGAGTTTTGTTCTTTTTGCCTAGGCTGGAGTGCA
2961 GTGGTACAATCTCGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGG
3041 ATTACAGGCACCCGCCACCACACCTGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCT
3121 GGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGC
3201 CCAGCCAAACCTTACTATTTTTTTAAAGAATTTTTTCCAGAGTTTAATTTCTGACATAGCTTAAGTTTTCCAGTAACTCT
3281 AAACTCCATCTCCTTTATCGTCATTAAGTCATTCACAAAAAGCCAGGAGAAGCATTTGGAAAGGGCATGATAATCAGTAT
3361 AATAATTTGCCTTGTGTGGTCAGCACTTAACTGTTTACAAAGCCCTTTCACGTGCACAGCAGGTGGGAACTGCGCGGTGT
3441 GGGCTGGGCCTGCGCTGGAAGCATATCCCGTGAAAAGTGTTAGTGCCTTAGGTGAAAGCAACATGTATCCCTTTAGACTA
3521 CTAACGGTATATGTTGTTCTTATGTATTTGTATTTATTTCTATTTTTTCTATGTTTATGTCATATTTAAACGATATCCTA
3601 CTGCTTGTTGGTATTACCCTAAACTGTTTAAATAAAGAGCTCTATTTTTAAAGAAAAAAGGTACAATTGA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gacACCC-CCGUCCUCCCCGc 5'
             |||| ||| |||||||| 
Target 5' cccTGGGCGGC-GGAGGGGCa 3'
790 - 809 164.00 -28.30
2
miRNA  3' gacACCCCCGUC--CUCCCCGc 5'
             || ||||||  |:||||| 
Target 5' cgaTGCGGGCAGCTGGGGGGCt 3'
616 - 637 151.00 -23.10
3
miRNA  3' gacacccccGUCCUCCCCGc 5'
                   :| ||||||: 
Target 5' gctgagctaTAAGAGGGGTg 3'
899 - 918 127.00 -16.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM6867432 1 COSMIC
COSM6843511 5 COSMIC
COSM364171 10 COSMIC
COSM8441990 29 COSMIC
COSM5621030 35 COSMIC
COSM3804621 42 COSMIC
COSM6997614 45 COSMIC
COSM4692311 48 COSMIC
COSM2051419 49 COSMIC
COSM1296105 53 COSMIC
COSM5005971 54 COSMIC
COSM6242148 63 COSMIC
COSM6683945 68 COSMIC
COSM7804967 91 COSMIC
COSM5458377 109 COSMIC
COSM464257 112 COSMIC
COSM906705 121 COSMIC
COSM2051418 122 COSMIC
COSM9382491 122 COSMIC
COSM8263564 144 COSMIC
COSM906704 145 COSMIC
COSM2051417 146 COSMIC
COSM8441082 157 COSMIC
COSM3486401 160 COSMIC
COSM6243797 163 COSMIC
COSM9391550 181 COSMIC
COSM5895485 186 COSMIC
COSM6125532 199 COSMIC
COSM4143602 209 COSMIC
COSM4030356 213 COSMIC
COSM291141 223 COSMIC
COSM6062380 247 COSMIC
COSM3486400 259 COSMIC
COSM2051414 260 COSMIC
COSM4030355 265 COSMIC
COSM1320290 266 COSMIC
COSM9758481 269 COSMIC
COSM6062381 291 COSMIC
COSM8549250 302 COSMIC
COSM4946372 306 COSMIC
COSM1667266 334 COSMIC
COSM7143882 345 COSMIC
COSM7282923 348 COSMIC
COSM7805317 359 COSMIC
COSM3865016 364 COSMIC
COSM4647614 370 COSMIC
COSM3486399 381 COSMIC
COSM2051412 382 COSMIC
COSM379778 382 COSMIC
COSM1667265 405 COSMIC
COSM7143881 405 COSMIC
COSM2051409 428 COSMIC
COSM6904988 430 COSMIC
COSM9651844 430 COSMIC
COSM6683943 433 COSMIC
COSM9779601 437 COSMIC
COSM9285506 442 COSMIC
COSM9883984 458 COSMIC
COSM906703 461 COSMIC
COSM1659495 489 COSMIC
COSM8193795 490 COSMIC
COSM906702 501 COSMIC
COSM6217996 502 COSMIC
COSM7508057 507 COSMIC
COSM8479228 508 COSMIC
COSM6886316 517 COSMIC
COSM6886315 518 COSMIC
COSM4526376 525 COSMIC
COSM9100327 528 COSMIC
COSM3934608 537 COSMIC
COSM7170723 567 COSMIC
COSM7170722 568 COSMIC
COSM2051406 591 COSMIC
COSM6445430 612 COSMIC
COSM906701 616 COSMIC
COSM3865015 617 COSMIC
COSM1210577 621 COSMIC
COSM4692310 622 COSMIC
COSM7590576 630 COSMIC
COSM4884045 633 COSMIC
COSM6280994 651 COSMIC
COSM3865014 655 COSMIC
COSM4168658 656 COSMIC
COSM7564808 669 COSMIC
COSM906700 672 COSMIC
COSM5139603 693 COSMIC
COSN30514463 718 COSMIC
COSN16276073 737 COSMIC
COSN30483219 755 COSMIC
COSN30461686 762 COSMIC
COSN30144614 774 COSMIC
COSN30461853 825 COSMIC
COSN30173553 847 COSMIC
COSN30100845 888 COSMIC
COSN5739865 962 COSMIC
COSN15853274 1373 COSMIC
COSN1440567 1547 COSMIC
COSN20090176 1696 COSMIC
COSN19454517 1765 COSMIC
COSN8453325 1806 COSMIC
COSN1440566 1829 COSMIC
COSN6450538 1843 COSMIC
COSN29175811 2030 COSMIC
COSN8453321 2464 COSMIC
COSN20094545 2597 COSMIC
COSN5369732 2674 COSMIC
COSN22161626 2749 COSMIC
COSN24830191 2914 COSMIC
COSN25157715 2959 COSMIC
COSN19552199 3439 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs141153963 4 dbSNP
rs1341185545 5 dbSNP
rs1383333890 10 dbSNP
rs144531654 19 dbSNP
rs71575792 22 dbSNP
rs1294798813 26 dbSNP
rs764869999 30 dbSNP
rs1053378478 31 dbSNP
rs773933736 32 dbSNP
rs1294427440 35 dbSNP
rs1384788541 37 dbSNP
rs1286621504 38 dbSNP
rs1458476289 43 dbSNP
rs200381326 45 dbSNP
rs543005854 46 dbSNP
rs145001756 48 dbSNP
rs575592471 49 dbSNP
rs1193002719 54 dbSNP
rs766969987 59 dbSNP
rs763367931 63 dbSNP
rs113490731 67 dbSNP
rs1466974557 73 dbSNP
rs1040762399 77 dbSNP
rs570292636 80 dbSNP
rs201566947 86 dbSNP
rs74399859 97 dbSNP
rs776388185 98 dbSNP
rs1334526685 101 dbSNP
rs150863617 102 dbSNP
rs1387855687 108 dbSNP
rs368532574 109 dbSNP
rs746570821 110 dbSNP
rs779422742 111 dbSNP
rs1388864414 115 dbSNP
rs116722436 122 dbSNP
rs1451283853 124 dbSNP
rs1379300497 126 dbSNP
rs778788413 137 dbSNP
rs757005624 141 dbSNP
rs1326130811 142 dbSNP
rs1252498892 143 dbSNP
rs1191789084 145 dbSNP
rs80148543 146 dbSNP
rs201737608 158 dbSNP
rs781439385 159 dbSNP
rs918384348 163 dbSNP
rs1204923038 165 dbSNP
rs1325856247 168 dbSNP
rs755178790 174 dbSNP
rs751730039 178 dbSNP
rs1448078115 179 dbSNP
rs766304881 182 dbSNP
rs866174990 191 dbSNP
rs1400404126 193 dbSNP
rs1312091131 195 dbSNP
rs1300660539 199 dbSNP
rs1229907867 201 dbSNP
rs763529301 203 dbSNP
rs143084792 208 dbSNP
rs72648587 209 dbSNP
rs895467233 211 dbSNP
rs1057242155 213 dbSNP
rs4298678 214 dbSNP
rs141659592 218 dbSNP
rs760334052 221 dbSNP
rs775075076 222 dbSNP
rs376141935 224 dbSNP
rs1192820260 225 dbSNP
rs1445473432 227 dbSNP
rs1239922214 228 dbSNP
rs1258748553 228 dbSNP
rs1201348675 229 dbSNP
rs771431074 231 dbSNP
rs745848085 232 dbSNP
rs778755478 234 dbSNP
rs770831697 237 dbSNP
rs1269060848 240 dbSNP
rs1224845179 241 dbSNP
rs1341855149 242 dbSNP
rs1338796003 243 dbSNP
rs1313192078 246 dbSNP
rs1395183373 248 dbSNP
rs868705219 251 dbSNP
rs749138239 253 dbSNP
rs777541683 254 dbSNP
rs1430318155 255 dbSNP
rs1371298216 257 dbSNP
rs1167374858 258 dbSNP
rs267598459 260 dbSNP
rs780206434 261 dbSNP
rs758373936 265 dbSNP
rs772933526 266 dbSNP
rs765896629 270 dbSNP
rs762398991 273 dbSNP
rs1483653545 275 dbSNP
rs754256886 276 dbSNP
rs1021721452 278 dbSNP
rs568899756 280 dbSNP
rs1265599998 282 dbSNP
rs1232297776 293 dbSNP
rs760421826 295 dbSNP
rs1329868522 296 dbSNP
rs1052512012 301 dbSNP
rs779756118 304 dbSNP
rs370153471 306 dbSNP
rs767166431 309 dbSNP
rs774236929 309 dbSNP
rs1012045768 311 dbSNP
rs1410400694 313 dbSNP
rs935452669 317 dbSNP
rs759017398 321 dbSNP
rs773897609 324 dbSNP
rs770738010 327 dbSNP
rs1393151046 333 dbSNP
rs1164115373 335 dbSNP
rs113018552 343 dbSNP
rs200332015 347 dbSNP
rs749158730 349 dbSNP
rs138679926 353 dbSNP
rs769529500 355 dbSNP
rs1202408113 356 dbSNP
rs1232754625 365 dbSNP
rs977164858 367 dbSNP
rs1461253859 371 dbSNP
rs964289970 371 dbSNP
rs1484845922 373 dbSNP
rs997672602 379 dbSNP
rs1452903506 381 dbSNP
rs532465282 382 dbSNP
rs984226142 384 dbSNP
rs767194890 386 dbSNP
rs565033215 387 dbSNP
rs758629071 392 dbSNP
rs1334664272 394 dbSNP
rs745996413 397 dbSNP
rs779065212 398 dbSNP
rs1349885543 405 dbSNP
rs770100714 410 dbSNP
rs867213765 411 dbSNP
rs757848472 415 dbSNP
rs754345103 424 dbSNP
rs1332964306 425 dbSNP
rs1006559853 426 dbSNP
rs764581315 427 dbSNP
rs1392498880 430 dbSNP
rs761570452 432 dbSNP
rs373761620 435 dbSNP
rs753082516 436 dbSNP
rs767132383 437 dbSNP
rs759221816 438 dbSNP
rs1479278570 444 dbSNP
rs773857237 451 dbSNP
rs1192419439 452 dbSNP
rs1466876385 453 dbSNP
rs1249440083 466 dbSNP
rs765818658 467 dbSNP
rs1446277993 469 dbSNP
rs931030581 470 dbSNP
rs1460160240 471 dbSNP
rs762902173 476 dbSNP
rs140887397 485 dbSNP
rs1345586524 487 dbSNP
rs1036853349 488 dbSNP
rs769691662 489 dbSNP
rs1369062767 492 dbSNP
rs747944327 493 dbSNP
rs1431741577 494 dbSNP
rs867904713 497 dbSNP
rs772253018 501 dbSNP
rs746041498 502 dbSNP
rs746191540 507 dbSNP
rs757369568 508 dbSNP
rs1172490036 511 dbSNP
rs778472059 514 dbSNP
rs749090674 517 dbSNP
rs1339181960 521 dbSNP
rs756629011 525 dbSNP
rs1474863319 526 dbSNP
rs948765069 526 dbSNP
rs1240178810 527 dbSNP
rs753069929 529 dbSNP
rs767855619 531 dbSNP
rs1279440670 536 dbSNP
rs1169516182 537 dbSNP
rs1208640894 544 dbSNP
rs754601710 545 dbSNP
rs142688552 548 dbSNP
rs528321980 554 dbSNP
rs1215421251 555 dbSNP
rs74060527 559 dbSNP
rs1361484103 568 dbSNP
rs1164902132 571 dbSNP
rs777334063 582 dbSNP
rs1459961642 586 dbSNP
rs1417203817 588 dbSNP
rs148884022 591 dbSNP
rs990149682 591 dbSNP
rs199848238 592 dbSNP
rs765148344 594 dbSNP
rs761809123 595 dbSNP
rs776300823 597 dbSNP
rs370683182 598 dbSNP
rs1170490915 606 dbSNP
rs759865903 609 dbSNP
rs774751235 612 dbSNP
rs755784034 614 dbSNP
rs757692467 616 dbSNP
rs1017877931 617 dbSNP
rs1185780994 618 dbSNP
rs575575280 621 dbSNP
rs374980858 622 dbSNP
rs748631973 623 dbSNP
rs1307148770 629 dbSNP
rs1271064171 630 dbSNP
rs781433394 631 dbSNP
rs889475408 634 dbSNP
rs1011520572 635 dbSNP
rs1293034762 637 dbSNP
rs891631602 640 dbSNP
rs1413510389 641 dbSNP
rs1393848687 648 dbSNP
rs1171548270 651 dbSNP
rs369424478 655 dbSNP
rs143712729 656 dbSNP
rs375986096 658 dbSNP
rs1478575922 662 dbSNP
rs1352258319 663 dbSNP
rs146061117 668 dbSNP
rs764742091 669 dbSNP
rs1416948065 673 dbSNP
rs59631801 674 dbSNP
rs753765346 676 dbSNP
rs1251084175 678 dbSNP
rs907018255 682 dbSNP
rs763905088 685 dbSNP
rs1480385590 686 dbSNP
rs1231235603 687 dbSNP
rs1224117052 690 dbSNP
rs1335679984 699 dbSNP
rs1272975749 701 dbSNP
rs372829475 704 dbSNP
rs866362899 705 dbSNP
rs867357850 706 dbSNP
rs775411640 707 dbSNP
rs771344338 708 dbSNP
rs763201448 709 dbSNP
rs911251911 712 dbSNP
rs773177415 718 dbSNP
rs200626382 719 dbSNP
rs781743973 726 dbSNP
rs1352788376 728 dbSNP
rs1162546051 730 dbSNP
rs1328475287 739 dbSNP
rs747666329 739 dbSNP
rs368620046 746 dbSNP
rs1397291414 749 dbSNP
rs1172233488 757 dbSNP
rs1454080446 758 dbSNP
rs190737162 759 dbSNP
rs1381525684 760 dbSNP
rs1180995877 770 dbSNP
rs1481345502 771 dbSNP
rs1230605802 774 dbSNP
rs1330978155 782 dbSNP
rs918756541 783 dbSNP
rs1442700980 786 dbSNP
rs1425988576 788 dbSNP
rs535209482 789 dbSNP
rs1346854599 797 dbSNP
rs1432894930 798 dbSNP
rs1225358637 799 dbSNP
rs11249009 800 dbSNP
rs976128571 801 dbSNP
rs1193418424 805 dbSNP
rs768514385 809 dbSNP
rs1377540128 819 dbSNP
rs1035859168 820 dbSNP
rs1001318135 821 dbSNP
rs1017761959 823 dbSNP
rs7536412 826 dbSNP
rs1161919397 830 dbSNP
rs535986309 833 dbSNP
rs1027896929 835 dbSNP
rs543042342 836 dbSNP
rs1259545392 840 dbSNP
rs891724354 850 dbSNP
rs1052916312 851 dbSNP
rs1185285740 856 dbSNP
rs1219017971 858 dbSNP
rs7522997 862 dbSNP
rs186889261 863 dbSNP
rs571564969 865 dbSNP
rs1283429181 870 dbSNP
rs1229007676 871 dbSNP
rs1220843620 881 dbSNP
rs755884722 887 dbSNP
rs942812043 888 dbSNP
rs113238737 891 dbSNP
rs906946017 893 dbSNP
rs1452073837 904 dbSNP
rs528275912 915 dbSNP
rs931532506 916 dbSNP
rs1044651233 919 dbSNP
rs1185355885 921 dbSNP
rs149033026 923 dbSNP
rs1261983744 930 dbSNP
rs972895046 931 dbSNP
rs938834057 934 dbSNP
rs1332224606 943 dbSNP
rs1241465300 945 dbSNP
rs928841327 948 dbSNP
rs1207297120 949 dbSNP
rs979843433 951 dbSNP
rs1337042813 952 dbSNP
rs1465902589 963 dbSNP
rs1271286717 968 dbSNP
rs1232734618 978 dbSNP
rs1318949994 979 dbSNP
rs1297956759 990 dbSNP
rs969829429 991 dbSNP
rs1361640246 997 dbSNP
rs1294663961 1004 dbSNP
rs555751481 1007 dbSNP
rs989816843 1008 dbSNP
rs1162246930 1010 dbSNP
rs1380177161 1011 dbSNP
rs1177502027 1016 dbSNP
rs955958815 1019 dbSNP
rs1172018564 1029 dbSNP
rs1426548879 1040 dbSNP
rs1032020829 1041 dbSNP
rs997471845 1042 dbSNP
rs1213188210 1046 dbSNP
rs901656296 1051 dbSNP
rs1253322335 1054 dbSNP
rs1482828207 1055 dbSNP
rs1254000374 1056 dbSNP
rs944795446 1063 dbSNP
rs1369517679 1066 dbSNP
rs1325790556 1070 dbSNP
rs910623571 1076 dbSNP
rs1396537620 1078 dbSNP
rs77396647 1081 dbSNP
rs1460098599 1095 dbSNP
rs1372129400 1101 dbSNP
rs952208602 1102 dbSNP
rs1455395374 1103 dbSNP
rs1393246760 1106 dbSNP
rs1006923813 1108 dbSNP
rs1192876833 1111 dbSNP
rs1419781100 1116 dbSNP
rs530929615 1118 dbSNP
rs201989241 1122 dbSNP
rs1194310595 1135 dbSNP
rs1480464019 1135 dbSNP
rs563293196 1139 dbSNP
rs889877691 1141 dbSNP
rs1346147345 1145 dbSNP
rs761787574 1146 dbSNP
rs544996103 1153 dbSNP
rs1303348781 1155 dbSNP
rs1048345421 1163 dbSNP
rs1238068720 1166 dbSNP
rs1335844019 1174 dbSNP
rs931324720 1193 dbSNP
rs1379186034 1199 dbSNP
rs1310355785 1205 dbSNP
rs1395375575 1207 dbSNP
rs577653508 1209 dbSNP
rs1436381370 1214 dbSNP
rs897181382 1215 dbSNP
rs1037668423 1223 dbSNP
rs938983865 1229 dbSNP
rs1454198517 1235 dbSNP
rs1365453614 1248 dbSNP
rs928788146 1259 dbSNP
rs980274331 1262 dbSNP
rs1418551284 1265 dbSNP
rs1258550762 1266 dbSNP
rs1190273068 1270 dbSNP
rs377621099 1271 dbSNP
rs774420242 1277 dbSNP
rs183327888 1280 dbSNP
rs145888294 1281 dbSNP
rs989787307 1289 dbSNP
rs1353552018 1295 dbSNP
rs955886315 1296 dbSNP
rs1417388046 1298 dbSNP
rs150274039 1301 dbSNP
rs976402863 1302 dbSNP
rs1293563190 1304 dbSNP
rs1022712287 1306 dbSNP
rs1353346093 1307 dbSNP
rs1182140581 1311 dbSNP
rs77584835 1314 dbSNP
rs1253594922 1316 dbSNP
rs1156726129 1320 dbSNP
rs1453178909 1323 dbSNP
rs7531447 1325 dbSNP
rs762499189 1340 dbSNP
rs536304114 1341 dbSNP
rs1257070030 1343 dbSNP
rs1007352135 1356 dbSNP
rs1449076113 1358 dbSNP
rs889846574 1365 dbSNP
rs770936140 1373 dbSNP
rs1273206275 1385 dbSNP
rs1356002467 1387 dbSNP
rs113609387 1392 dbSNP
rs775024456 1393 dbSNP
rs1283210034 1394 dbSNP
rs1431270791 1400 dbSNP
rs1327933008 1404 dbSNP
rs1244097648 1418 dbSNP
rs186200316 1420 dbSNP
rs1315030284 1437 dbSNP
rs1040426818 1440 dbSNP
rs1396989516 1441 dbSNP
rs1037067632 1442 dbSNP
rs1003502366 1449 dbSNP
rs907453838 1451 dbSNP
rs142594007 1453 dbSNP
rs1193126029 1458 dbSNP
rs1469343283 1464 dbSNP
rs1402374027 1466 dbSNP
rs910665296 1469 dbSNP
rs147725396 1470 dbSNP
rs536433715 1471 dbSNP
rs1268253583 1479 dbSNP
rs376422104 1480 dbSNP
rs1371727162 1481 dbSNP
rs113934470 1487 dbSNP
rs1366364455 1491 dbSNP
rs1438821324 1493 dbSNP
rs1349305565 1501 dbSNP
rs924264102 1504 dbSNP
rs975784038 1508 dbSNP
rs962301020 1510 dbSNP
rs747581650 1514 dbSNP
rs1475448946 1516 dbSNP
rs1167737339 1519 dbSNP
rs928213767 1520 dbSNP
rs981114826 1523 dbSNP
rs1452032988 1529 dbSNP
rs1489244726 1543 dbSNP
rs971000198 1547 dbSNP
rs1439239324 1549 dbSNP
rs966318109 1558 dbSNP
rs1204252198 1560 dbSNP
rs574430283 1562 dbSNP
rs986037422 1563 dbSNP
rs2153334 1569 dbSNP
rs758456604 1577 dbSNP
rs1280262531 1580 dbSNP
rs1317746144 1583 dbSNP
rs1032867989 1589 dbSNP
rs181005773 1596 dbSNP
rs1307638725 1599 dbSNP
rs1435739268 1604 dbSNP
rs1377579756 1609 dbSNP
rs903135019 1611 dbSNP
rs779298706 1626 dbSNP
rs557662858 1629 dbSNP
rs961491667 1632 dbSNP
rs1015971200 1643 dbSNP
rs1220804881 1644 dbSNP
rs1470873194 1654 dbSNP
rs1230834358 1660 dbSNP
rs1180922690 1663 dbSNP
rs1327532954 1667 dbSNP
rs1002892744 1670 dbSNP
rs907424850 1672 dbSNP
rs748210922 1676 dbSNP
rs1284862100 1677 dbSNP
rs1225591100 1683 dbSNP
rs1348553872 1684 dbSNP
rs1044656534 1685 dbSNP
rs1415577936 1696 dbSNP
rs1387940927 1698 dbSNP
rs1013199749 1699 dbSNP
rs930768397 1705 dbSNP
rs1346371004 1719 dbSNP
rs1422414996 1720 dbSNP
rs1401942757 1723 dbSNP
rs893306145 1728 dbSNP
rs145520006 1733 dbSNP
rs1475358890 1740 dbSNP
rs940861338 1745 dbSNP
rs779037218 1758 dbSNP
rs1185612062 1770 dbSNP
rs1482797096 1777 dbSNP
rs1242643441 1780 dbSNP
rs548906335 1788 dbSNP
rs115971676 1789 dbSNP
rs140016476 1797 dbSNP
rs377622968 1808 dbSNP
rs537476415 1812 dbSNP
rs1269529434 1818 dbSNP
rs910240131 1821 dbSNP
rs1363013059 1822 dbSNP
rs1291178823 1823 dbSNP
rs1429179667 1824 dbSNP
rs986007684 1825 dbSNP
rs147897795 1827 dbSNP
rs1461503318 1829 dbSNP
rs920392410 1831 dbSNP
rs11249006 1843 dbSNP
rs1340477130 1844 dbSNP
rs1419912155 1848 dbSNP
rs1188225732 1862 dbSNP
rs1018888057 1863 dbSNP
rs1463523825 1864 dbSNP
rs757083725 1865 dbSNP
rs1274841203 1873 dbSNP
rs1231666087 1876 dbSNP
rs961736490 1877 dbSNP
rs1015690327 1881 dbSNP
rs1029023933 1882 dbSNP
rs1271515421 1891 dbSNP
rs1305024863 1899 dbSNP
rs1308470885 1911 dbSNP
rs1440956138 1913 dbSNP
rs1399104252 1930 dbSNP
rs1213144708 1936 dbSNP
rs142297514 1938 dbSNP
rs1328797298 1948 dbSNP
rs995241049 1961 dbSNP
rs1396939926 1965 dbSNP
rs1304786872 1969 dbSNP
rs1171967451 1973 dbSNP
rs751610305 1977 dbSNP
rs148714772 1978 dbSNP
rs1354726929 1980 dbSNP
rs940872476 1986 dbSNP
rs1023012495 1995 dbSNP
rs188147509 1996 dbSNP
rs186385585 2003 dbSNP
rs576751938 2004 dbSNP
rs1236637473 2011 dbSNP
rs1265299654 2017 dbSNP
rs1200749554 2022 dbSNP
rs991204863 2024 dbSNP
rs755752211 2026 dbSNP
rs775028153 2030 dbSNP
rs144206910 2039 dbSNP
rs1040103110 2053 dbSNP
rs149537152 2056 dbSNP
rs1372562016 2070 dbSNP
rs1298617026 2075 dbSNP
rs1385734393 2083 dbSNP
rs977141216 2085 dbSNP
rs139378107 2093 dbSNP
rs911752215 2099 dbSNP
rs759237253 2103 dbSNP
rs1369675663 2104 dbSNP
rs552712840 2116 dbSNP
rs953358409 2123 dbSNP
rs1029325459 2148 dbSNP
rs1198330347 2150 dbSNP
rs776235347 2151 dbSNP
rs1419733704 2163 dbSNP
rs1252942581 2179 dbSNP
rs1180201346 2187 dbSNP
rs920529584 2201 dbSNP
rs1336180418 2212 dbSNP
rs181830967 2213 dbSNP
rs375921677 2219 dbSNP
rs963675821 2220 dbSNP
rs1014973377 2225 dbSNP
rs1231912596 2226 dbSNP
rs940521671 2229 dbSNP
rs771352911 2231 dbSNP
rs747360634 2233 dbSNP
rs971505966 2236 dbSNP
rs1407563736 2249 dbSNP
rs1022938890 2250 dbSNP
rs991492800 2251 dbSNP
rs11249002 2258 dbSNP
rs1470649898 2262 dbSNP
rs1171869883 2264 dbSNP
rs1012821703 2265 dbSNP
rs1454377912 2265 dbSNP
rs1033281562 2266 dbSNP
rs999543444 2268 dbSNP
rs1472412822 2272 dbSNP
rs903347291 2273 dbSNP
rs1190593362 2286 dbSNP
rs895439111 2288 dbSNP
rs146246807 2296 dbSNP
rs1206199296 2301 dbSNP
rs935687371 2309 dbSNP
rs112355289 2311 dbSNP
rs12028945 2313 dbSNP
rs1328134728 2320 dbSNP
rs888866108 2328 dbSNP
rs1050025891 2329 dbSNP
rs190250373 2332 dbSNP
rs1258899554 2333 dbSNP
rs1245894242 2338 dbSNP
rs945807412 2354 dbSNP
rs761494245 2355 dbSNP
rs1216515953 2356 dbSNP
rs1387015980 2357 dbSNP
rs911636286 2359 dbSNP
rs569541057 2363 dbSNP
rs930325586 2368 dbSNP
rs141725514 2369 dbSNP
rs987363380 2370 dbSNP
rs953296872 2376 dbSNP
rs10903035 2377 dbSNP
rs1224927015 2379 dbSNP
rs1430852210 2386 dbSNP
rs1246723132 2392 dbSNP
rs79743997 2394 dbSNP
rs1464002643 2410 dbSNP
rs547477950 2423 dbSNP
rs963364354 2428 dbSNP
rs116825309 2432 dbSNP
rs1445618188 2436 dbSNP
rs778999214 2437 dbSNP
rs562236455 2438 dbSNP
rs1367347755 2442 dbSNP
rs1313446483 2449 dbSNP
rs1399296706 2450 dbSNP
rs768593909 2462 dbSNP
rs59155456 2468 dbSNP
rs138626979 2470 dbSNP
rs1161417969 2471 dbSNP
rs991460664 2479 dbSNP
rs185370251 2481 dbSNP
rs1168924597 2487 dbSNP
rs55733257 2489 dbSNP
rs1054062113 2490 dbSNP
rs577677074 2503 dbSNP
rs74060526 2505 dbSNP
rs540657031 2511 dbSNP
rs977691016 2514 dbSNP
rs1258618008 2517 dbSNP
rs533032516 2522 dbSNP
rs968040946 2531 dbSNP
rs757135166 2540 dbSNP
rs573614662 2547 dbSNP
rs1489705731 2556 dbSNP
rs555349605 2558 dbSNP
rs1227516617 2562 dbSNP
rs1371616127 2566 dbSNP
rs1217328988 2571 dbSNP
rs751336243 2576 dbSNP
rs953102349 2583 dbSNP
rs1288783638 2586 dbSNP
rs931849000 2587 dbSNP
rs1028686619 2590 dbSNP
rs1369054341 2603 dbSNP
rs994569756 2605 dbSNP
rs200746635 2609 dbSNP
rs200951975 2610 dbSNP
rs35747193 2611 dbSNP
rs71835287 2611 dbSNP
rs750256828 2611 dbSNP
rs770999222 2611 dbSNP
rs796605087 2611 dbSNP
rs1397388935 2620 dbSNP
rs796647670 2623 dbSNP
rs777605644 2625 dbSNP
rs907787104 2626 dbSNP
rs1245779022 2634 dbSNP
rs1182035777 2638 dbSNP
rs1290504328 2648 dbSNP
rs1249415197 2651 dbSNP
rs536969883 2656 dbSNP
rs983455572 2656 dbSNP
rs1349367241 2660 dbSNP
rs1280637252 2662 dbSNP
rs1217561783 2664 dbSNP
rs1344315663 2666 dbSNP
rs111780232 2670 dbSNP
rs1004770921 2674 dbSNP
rs1411846148 2675 dbSNP
rs1025064862 2682 dbSNP
rs116546230 2684 dbSNP
rs1415773346 2712 dbSNP
rs1418787071 2712 dbSNP
rs1046242395 2714 dbSNP
rs1332700707 2715 dbSNP
rs947883032 2723 dbSNP
rs916448485 2726 dbSNP
rs1032954023 2730 dbSNP
rs1412292826 2730 dbSNP
rs1158621909 2732 dbSNP
rs1473394235 2733 dbSNP
rs1409308066 2736 dbSNP
rs1181258646 2741 dbSNP
rs1485844351 2746 dbSNP
rs1422344034 2752 dbSNP
rs1207883324 2762 dbSNP
rs1441937113 2763 dbSNP
rs539501263 2766 dbSNP
rs1187609894 2768 dbSNP
rs540628060 2773 dbSNP
rs1055873049 2774 dbSNP
rs1245598834 2779 dbSNP
rs1287946988 2782 dbSNP
rs936115966 2787 dbSNP
rs925939756 2795 dbSNP
rs114522347 2796 dbSNP
rs1009916531 2800 dbSNP
rs1273357103 2805 dbSNP
rs572143753 2806 dbSNP
rs547911042 2809 dbSNP
rs192809606 2812 dbSNP
rs1386016329 2815 dbSNP
rs953528977 2817 dbSNP
rs1215057216 2825 dbSNP
rs1424208257 2827 dbSNP
rs931746199 2828 dbSNP
rs1179879278 2842 dbSNP
rs1472449224 2843 dbSNP
rs1367058899 2855 dbSNP
rs189878589 2860 dbSNP
rs1029156057 2869 dbSNP
rs752556880 2872 dbSNP
rs1037970143 2875 dbSNP
rs1221212694 2881 dbSNP
rs1463551874 2882 dbSNP
rs1267745487 2884 dbSNP
rs550470036 2889 dbSNP
rs1395508012 2891 dbSNP
rs1330915857 2896 dbSNP
rs762887867 2914 dbSNP
rs1214504878 2915 dbSNP
rs941863975 2919 dbSNP
rs1464452456 2922 dbSNP
rs141662917 2926 dbSNP
rs7525481 2927 dbSNP
rs1436655132 2937 dbSNP
rs7529826 2941 dbSNP
rs1458138052 2942 dbSNP
rs1423631223 2947 dbSNP
rs372199894 2957 dbSNP
rs906422738 2959 dbSNP
rs1190356258 2963 dbSNP
rs7532647 2966 dbSNP
rs959755012 2966 dbSNP
rs1253307763 2967 dbSNP
rs7532646 2968 dbSNP
rs71589759 2969 dbSNP
rs1221315528 2972 dbSNP
rs1308383392 2973 dbSNP
rs894980332 2974 dbSNP
rs1226771347 2978 dbSNP
rs1365072431 2984 dbSNP
rs1479559629 2991 dbSNP
rs1252831540 2992 dbSNP
rs1053624804 2997 dbSNP
rs541147799 2998 dbSNP
rs1291367951 2999 dbSNP
rs966836766 3000 dbSNP
rs1299688149 3007 dbSNP
rs926046789 3008 dbSNP
rs1216735617 3017 dbSNP
rs374042522 3028 dbSNP
rs1363050481 3030 dbSNP
rs1041690216 3031 dbSNP
rs1008462381 3032 dbSNP
rs1427790425 3034 dbSNP
rs1320548053 3035 dbSNP
rs891357602 3038 dbSNP
rs946024128 3042 dbSNP
rs1030437984 3046 dbSNP
rs1433506745 3048 dbSNP
rs1385819493 3050 dbSNP
rs769710293 3053 dbSNP
rs561361557 3054 dbSNP
rs1466259820 3059 dbSNP
rs1265542445 3062 dbSNP
rs1190790257 3063 dbSNP
rs1308854000 3066 dbSNP
rs760796881 3067 dbSNP
rs987680463 3068 dbSNP
rs1203415347 3070 dbSNP
rs1375735037 3078 dbSNP
rs1342156057 3079 dbSNP
rs1299127349 3080 dbSNP
rs7516266 3095 dbSNP
rs1357943835 3096 dbSNP
rs922070029 3097 dbSNP
rs973545955 3100 dbSNP
rs1298778163 3104 dbSNP
rs1176068967 3107 dbSNP
rs963137481 3107 dbSNP
rs1350697220 3109 dbSNP
rs191600085 3113 dbSNP
rs1407756322 3117 dbSNP
rs1395133402 3121 dbSNP
rs1157728295 3123 dbSNP
rs1369889302 3124 dbSNP
rs1416964255 3126 dbSNP
rs557677589 3134 dbSNP
rs539247709 3136 dbSNP
rs953149284 3141 dbSNP
rs1390557878 3142 dbSNP
rs1028666823 3147 dbSNP
rs970784658 3149 dbSNP
rs1024688486 3150 dbSNP
rs1012135470 3152 dbSNP
rs895063989 3153 dbSNP
rs1463445464 3154 dbSNP
rs1032152164 3158 dbSNP
rs1245053438 3159 dbSNP
rs1212894984 3165 dbSNP
rs941875646 3168 dbSNP
rs572239392 3175 dbSNP
rs1285422915 3178 dbSNP
rs1253780943 3182 dbSNP
rs1001118989 3186 dbSNP
rs1286439676 3187 dbSNP
rs902372713 3189 dbSNP
rs553954080 3195 dbSNP
rs946191456 3196 dbSNP
rs535969272 3197 dbSNP
rs186688926 3198 dbSNP
rs550210251 3199 dbSNP
rs1399940018 3205 dbSNP
rs1302401117 3206 dbSNP
rs949334279 3214 dbSNP
rs917834838 3217 dbSNP
rs1395872376 3225 dbSNP
rs1472484734 3228 dbSNP
rs1369361150 3230 dbSNP
rs183512483 3233 dbSNP
rs937988606 3236 dbSNP
rs1415914388 3242 dbSNP
rs1204345539 3256 dbSNP
rs1360394606 3257 dbSNP
rs535445107 3265 dbSNP
rs925369226 3277 dbSNP
rs1269664181 3280 dbSNP
rs1206384817 3281 dbSNP
rs942181215 3282 dbSNP
rs1265851634 3292 dbSNP
rs1246711222 3299 dbSNP
rs552936220 3300 dbSNP
rs1311847277 3301 dbSNP
rs1365240459 3303 dbSNP
rs753720944 3303 dbSNP
rs1435905300 3332 dbSNP
rs1159370678 3338 dbSNP
rs983606518 3339 dbSNP
rs1423068016 3343 dbSNP
rs970502063 3345 dbSNP
rs1415367204 3346 dbSNP
rs1024605281 3347 dbSNP
rs1485974262 3357 dbSNP
rs990501976 3362 dbSNP
rs1262298032 3374 dbSNP
rs1203479364 3386 dbSNP
rs966887579 3399 dbSNP
rs1456663179 3403 dbSNP
rs1486883818 3409 dbSNP
rs773315071 3411 dbSNP
rs10903034 3412 dbSNP
rs955847061 3413 dbSNP
rs58603668 3423 dbSNP
rs1446133505 3424 dbSNP
rs142652056 3427 dbSNP
rs879919882 3433 dbSNP
rs528993159 3434 dbSNP
rs1226840516 3435 dbSNP
rs193277843 3436 dbSNP
rs561299199 3439 dbSNP
rs1295584231 3443 dbSNP
rs964375190 3448 dbSNP
rs10903032 3453 dbSNP
rs1296827762 3454 dbSNP
rs1385488470 3457 dbSNP
rs1390411563 3467 dbSNP
rs1020819470 3469 dbSNP
rs1388849335 3470 dbSNP
rs1386452554 3476 dbSNP
rs1166234026 3478 dbSNP
rs1474759680 3484 dbSNP
rs1246927038 3492 dbSNP
rs867173771 3499 dbSNP
rs1200500464 3516 dbSNP
rs1449676325 3521 dbSNP
rs886177090 3522 dbSNP
rs1484029888 3525 dbSNP
rs1289138123 3526 dbSNP
rs1457115260 3543 dbSNP
rs1272316045 3550 dbSNP
rs1047589157 3560 dbSNP
rs1391775378 3569 dbSNP
rs1345758823 3591 dbSNP
rs1276856695 3592 dbSNP
rs1231404053 3594 dbSNP
rs1013418702 3595 dbSNP
rs896397222 3613 dbSNP
rs1166828354 3616 dbSNP
rs1475378378 3630 dbSNP
rs1422905496 3635 dbSNP
rs575672719 3637 dbSNP
rs890542833 3646 dbSNP
rs1328689915 3657 dbSNP
rs1051692970 3660 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A HITS-CLIP data was present in Chi_ControlB_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gacacccccguccUCCCCGc 5'
                       |||||| 
Target 5' -------------AGGGGCa 3'
1 - 7
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000327575.2 | 3UTR | AGGGGCAUUGCACUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset Chi_ControlB_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control B
Location of target site ENST00000327575.2 | 3UTR | AGGGGCAUUGCACUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
63 hsa-miR-4749-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT082256 MED29 mediator complex subunit 29 2 4
MIRT112161 OTUD3 OTU deubiquitinase 3 2 2
MIRT150036 MIDN midnolin 2 2
MIRT246308 HIST2H2AA3 histone cluster 2 H2A family member a3 2 4
MIRT246320 HIST2H2AA4 histone cluster 2 H2A family member a4 2 4
MIRT248254 SP1 Sp1 transcription factor 2 2
MIRT257944 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT466973 STARD7 StAR related lipid transfer domain containing 7 2 4
MIRT492322 SETD1B SET domain containing 1B 2 2
MIRT496204 EFCAB1 EF-hand calcium binding domain 1 2 2
MIRT497568 CCR6 C-C motif chemokine receptor 6 2 2
MIRT502990 CCDC71L coiled-coil domain containing 71 like 2 8
MIRT508300 SIX5 SIX homeobox 5 2 4
MIRT522472 ZAK mitogen-activated protein kinase kinase kinase 20 2 2
MIRT525825 VIMP selenoprotein S 2 4
MIRT528154 BCL2L1 BCL2 like 1 2 2
MIRT532606 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT551302 RPRM reprimo, TP53 dependent G2 arrest mediator homolog 2 2
MIRT568777 FAM53C family with sequence similarity 53 member C 2 6
MIRT570896 METTL21A methyltransferase like 21A 2 2
MIRT570963 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT571167 ZNF85 zinc finger protein 85 2 2
MIRT576751 Tmem127 transmembrane protein 127 2 2
MIRT609854 DAZAP2 DAZ associated protein 2 2 2
MIRT627101 PDRG1 p53 and DNA damage regulated 1 2 2
MIRT637060 PRKAG1 protein kinase AMP-activated non-catalytic subunit gamma 1 2 2
MIRT639423 PKP1 plakophilin 1 2 2
MIRT643208 TYW3 tRNA-yW synthesizing protein 3 homolog 2 4
MIRT646251 PRSS38 protease, serine 38 2 2
MIRT647145 CYP27C1 cytochrome P450 family 27 subfamily C member 1 2 2
MIRT647429 ZKSCAN2 zinc finger with KRAB and SCAN domains 2 2 2
MIRT650666 GAPDHP44 glyceraldehyde 3 phosphate dehydrogenase pseudogene 44 2 2
MIRT651816 USP49 ubiquitin specific peptidase 49 2 2
MIRT657376 HMGA1 high mobility group AT-hook 1 2 2
MIRT658105 FOXK1 forkhead box K1 2 2
MIRT658161 FCHSD1 FCH and double SH3 domains 1 2 2
MIRT662754 LRRC3C leucine rich repeat containing 3C 2 2
MIRT667209 NIPAL1 NIPA like domain containing 1 2 2
MIRT687003 RPL35 ribosomal protein L35 2 2
MIRT707057 NACC2 NACC family member 2 2 2
MIRT709048 MRO maestro 2 2
MIRT709054 MGAT5B mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B 2 2
MIRT709446 VWA2 von Willebrand factor A domain containing 2 2 2
MIRT709847 SNX12 sorting nexin 12 2 2
MIRT710790 IFNLR1 interferon lambda receptor 1 2 2
MIRT711696 GMPR guanosine monophosphate reductase 2 2
MIRT712462 KCNC3 potassium voltage-gated channel subfamily C member 3 2 2
MIRT713884 MOB3A MOB kinase activator 3A 2 2
MIRT715329 NTN1 netrin 1 2 2
MIRT715927 CHD4 chromodomain helicase DNA binding protein 4 2 2
MIRT716533 ATF5 activating transcription factor 5 2 2
MIRT716937 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT717007 MFSD6 major facilitator superfamily domain containing 6 2 2
MIRT719139 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT720853 MEF2D myocyte enhancer factor 2D 2 2
MIRT721484 LTB4R2 leukotriene B4 receptor 2 2 2
MIRT721517 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT722895 LRRC20 leucine rich repeat containing 20 2 2
MIRT723066 GGA1 golgi associated, gamma adaptin ear containing, ARF binding protein 1 2 2
MIRT723086 INSIG1 insulin induced gene 1 2 2
MIRT723353 ASCL2 achaete-scute family bHLH transcription factor 2 2 2
MIRT723483 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT724576 NOTCH2 notch 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4749 Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4749 Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4749 Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-miR-4749-3p Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-4749-3p Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-4749-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-4749-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-4749-3p Cisplatin 5460033 NSC119875 approved resistant cell line (OVSAHO)
hsa-miR-4749-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (TOV-112D)

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