pre-miRNA Information
pre-miRNA hsa-mir-5691   
Genomic Coordinates chr11: 9090312 - 9090379
Description Homo sapiens miR-5691 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-5691
Sequence 9| UUGCUCUGAGCUCCGAGAAAGC |30
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1042238449 3 dbSNP
rs554804494 11 dbSNP
rs1172229307 13 dbSNP
rs112511786 14 dbSNP
Putative Targets

Gene Information
Gene Symbol FAM210A   
Synonyms C18orf19, HsT2329
Description family with sequence similarity 210 member A
Transcript NM_001098801   
Other Transcripts NM_152352   
Expression
Putative miRNA Targets on FAM210A
3'UTR of FAM210A
(miRNA target sites are highlighted)
>FAM210A|NM_001098801|3'UTR
   1 GGTGCCTTATATAGCAGTATAGAAAATTCCTGCACTTTAACCCTTTGGAAACTATGGGCAAAGATACATGTGTCTGATTA
  81 TTTTTTTGGTTAGTTGCCGAAATATACTAGTTCTCTGAGGGTTAAAGAAGTAAAATACCTTTTTAAAGTTAAATATCACT
 161 AGAAAAATCAGTGTTATTACAAGGGAAGAAATGAACCCAGTTTAAGAATTTGCCATCAGTAGCAGTATTAAGCAGTGGTT
 241 AATGTCTTAGAAGTCAGACTTCTTTTTCAAGGTCTTCAGAACCACACTTGATTTCTGTTTTGTTGCAGCTGTAATTGACA
 321 CATACTAGGCAGCTGACTCCTTGAATATCCAGTGTGACCCATAAAATAGTCTGTTAATACCGGATCTTAATTTTTATGTT
 401 ATTCATTAAGATTTTAACTATATTCAGTACGTAATTTGGAGACAAACTAGCATCATCAAAACTGCCTGTAAATAAGGTGT
 481 TTAGTCTTTCTATAAAAACAGAATAGAGCAGTTACCTACCAGTTAAAATATCTTATATGAAGAAAATAGAATAAAGATCC
 561 AGTCATATATGTAAATAAGATGTACTGATTGTACGTAAATGAAAAATGGACCCTTTAAAAATTATTTTTACCTGAAGCTT
 641 GTCATAATTTTTTTAAAGCAAATATATATATGGTGATGGTACTTTTCAAAGTGTGTATTAGTGGTGATCACCTCAAACAT
 721 AAACCTCTGTTGTGAATCATTTGTGTCCTTTTCAACTGTCTTTCAGAGGAAAGGTAAAAAATCATTAAACCTTAAATTCA
 801 TTGTTAAAATCAAATATTTGTCAGCAGTAACTCAAGCTCATGGTTCTCAAGCAGAAAAAGGTTTGGGAGACTAAAAATGG
 881 AGTCAGGTTTTCATGGAGACTGCTAACTCCTTGGGGTAGACATGGGCCTTGCCTCAGCAAACCAGTGCAATTTCCCAATG
 961 TCTTAGTTTCAGAATTCATGCTGATTTCATTATGGAGTAAAGTTTTAAATTGTGGCTGCTGCTTTTTGTCTTACATTGAA
1041 GGGAAATATCCTTGTTTGAGCATTCTACTTGATTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGCCTCCCTCTCTCT
1121 CTCCCAGACTGGAGTGCAATGGTACAATCTCGGCTCACTGCATCCTCTGCCTCCCAGGTTCAAGTGATCCTCCCGCCTCA
1201 GCTTTCCAAGTAGCTGGGAGTATAAGCGTGTGCCACCACACTCAGCTAATTTTTGTATTTTTAGTGGAGGTGGAGTTTCA
1281 CCATGTTAGCCAGGCTAGTCTCCAACTCCTGACCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCACCACCACGCCC
1361 AGCTAATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATCTTAACAAAGCTATCATTAAATCATTTGCTTGTAATG
1441 AAATTCAGCCGTTGTCAGCTGTGAGCGTTGCGGGGCTGGTGGGGTGTGTTTGAGTATGTAAGTGTCTATTTCCTGTGCTC
1521 TAACAGTGACTATTTCAGTTCTAACCCTTCAATTGCTAATTGGATGAGGGAATGGCCTCTTAGATTGTCCTTGTTTTGAC
1601 TTATCTGCTAAGGCGAGAGAATGTCTGGGTTTGCCACACAGTCCCGCAGGGACCCCTGCTCTTTGCCAGGATTTTTATAT
1681 CAAGTACTTAGTTTGGCCAAATTTAGAGTATAGTTTAAAGGGGAAAAAAAGTTTGTATTTGATGAGTCTAATTACTATAT
1761 TAGAATGCTTTTTAAATGAATATGCTGTGATTGGAATCTCTTCTTGGGGGCCGGGGAGAGTGCTGAGAGATGCAGCTGTG
1841 TCTCTGCTCTCTGCAGTCTTGGGCAGGCAGCACCGCTGTCTCCTGATACAGAGGGTTGAATGCACTGCTTCACATTGATG
1921 CCACATTTTCAAATCTAAACATGATTAACATGTTTTTTAAGTATTTATCAAATAATTCACATTTTTGCAGGTTTAAGTGC
2001 TGTTTTTTAAGATATTAAACATGTTCCTTGTTTCTTTTTTCTTTTTAACCACTGGAGACTATGTGAAAATCTTGTGTTAT
2081 ATGGAATTTTTCTAAAACAATTTCCTTTTACTTTTCATGTTGCATATTTTCCAGTGGGGATAAATTGGAGGTTCTTATTA
2161 CTAATAATCCTGAAACTAAAATTTGCTTTTCCTGCATAGACATCTTTTGTTAGTCCATTTGAGTTTTGTTGCCATCCAGT
2241 TTCATGATCATGTTGTGTTAGTCTAATAGACAATGAGTTACTGCTTGAATGATATGAAATTCTCTAGTAAAAAATGCTCT
2321 GAAGATGTGAGAAGCTCTGTTGTATTACTTGGCACCAGGAATGTTACAAAAATGTTGTTGCTAGCATATTGCTAACCTAG
2401 TCCTTAAGTTTCAGGGATTCCTGTAATATGTTGAGTTTGGAGTATTAATAGCAGGCTAACAGAATACAGTACCAATATGC
2481 CAAGTTAAATAATTGAGAATATATACAGTATAGTTTGCTATGTATAATAGACCTCATTTCATTTACAGTACACCTCACAC
2561 TTGGGATTAATTCACCTATAACCTCTGTGAACTGCGAGTGCTCGGCAGAAGCAGCCCTGTGTCTTACATGTCTACATTTA
2641 TATTTATATTTATATTTATTTTTTTGAGACAGAGTCTCACTCTGTCACCCAGGCTAGAGTGCAGTGGCATGATCATAGCT
2721 CACTTGCGTCTTGAACTCCTGGCTCAAGTGATCCTCCCACCTCAGCCTGCTGAGTAGCTGGGACTACAGGTGCACACCAC
2801 CATGCCTGGCTAAAGGCATGTCTGCATTTATGCGAGGTGTGTTGACCGGGTGGGGAGGGAGCTAGGACTGAGATTCGCCT
2881 GTGTAAAATGCACAAAAAGGGTTTGCTAAGCAAATTGATATTTGAAATGAAAGATGGATTAGGTGAGAGACTTAGTTTAT
2961 TCAGGAATAAGAGCAAAACCAACCACATCAAAAAATGTATTTCACTGAGACAGCCTTTTGTACATACAGCAGGGTGCTGT
3041 TTACAGATTTCAAGAAAGGAGAAAAAGAATGCTTATACTGAGATTACCTACCTCCCAGTAGTGAAAATAATAAATTTATC
3121 CCTTGAAATATAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cgaaagagccUCGAGUCUCGUu 5'
                    ||  :|||||| 
Target 5' ctataaaaacAGAATAGAGCAg 3'
490 - 511 128.00 -10.10
2
miRNA  3' cgAAAGAGCCUCGAGUCUCGUu 5'
            || :|| |:  | |||||| 
Target 5' gtTTATTCAGGAATAAGAGCAa 3'
2955 - 2976 128.00 -14.50
3
miRNA  3' cgAAAGAGCCUCGAGUCUCGuu 5'
            |||:|: |||  |:||||  
Target 5' ttTTTTTTTGAG-ACGGAGCct 3'
1090 - 1110 127.00 -13.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26975814 24 COSMIC
COSN30453977 43 COSMIC
COSN30166195 97 COSMIC
COSN30112148 113 COSMIC
COSN31569538 127 COSMIC
COSN6114853 372 COSMIC
COSN21920274 516 COSMIC
COSN32065295 609 COSMIC
COSN5843650 935 COSMIC
COSN22210552 972 COSMIC
COSN15187829 1409 COSMIC
COSN30111528 1445 COSMIC
COSN17211074 1456 COSMIC
COSN21724574 1512 COSMIC
COSN9223692 1605 COSMIC
COSN9326260 2427 COSMIC
COSN32061921 2636 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1232555200 1 dbSNP
rs771076117 2 dbSNP
rs761057336 7 dbSNP
rs773819952 11 dbSNP
rs1324800066 12 dbSNP
rs772413284 13 dbSNP
rs777894329 21 dbSNP
rs748579173 23 dbSNP
rs201929526 24 dbSNP
rs750055447 27 dbSNP
rs778698722 28 dbSNP
rs768238962 29 dbSNP
rs1405175924 31 dbSNP
rs748991444 32 dbSNP
rs756994890 32 dbSNP
rs753744216 34 dbSNP
rs779389463 36 dbSNP
rs1238775270 38 dbSNP
rs967763800 41 dbSNP
rs755685983 42 dbSNP
rs1434379175 43 dbSNP
rs750302261 47 dbSNP
rs1022292114 62 dbSNP
rs1050996680 64 dbSNP
rs539258590 66 dbSNP
rs377046472 67 dbSNP
rs1333143454 88 dbSNP
rs1400682666 88 dbSNP
rs997103651 98 dbSNP
rs571775136 99 dbSNP
rs1278156631 105 dbSNP
rs1054215584 107 dbSNP
rs1201200943 108 dbSNP
rs774588845 113 dbSNP
rs1321714345 115 dbSNP
rs1220645358 121 dbSNP
rs924336663 127 dbSNP
rs1307215754 130 dbSNP
rs1203121697 137 dbSNP
rs1248938055 139 dbSNP
rs1489196889 149 dbSNP
rs118166978 151 dbSNP
rs1267492987 153 dbSNP
rs1479258709 160 dbSNP
rs949715012 167 dbSNP
rs1053284335 169 dbSNP
rs1002936232 170 dbSNP
rs907300889 173 dbSNP
rs1351517500 180 dbSNP
rs1044516199 186 dbSNP
rs1437060403 205 dbSNP
rs1302657558 215 dbSNP
rs948713327 223 dbSNP
rs1450887631 241 dbSNP
rs1343657453 246 dbSNP
rs1402091417 255 dbSNP
rs1340200379 261 dbSNP
rs1339188424 268 dbSNP
rs1213141368 277 dbSNP
rs1292415616 281 dbSNP
rs1333136190 285 dbSNP
rs1322872949 286 dbSNP
rs1414613079 288 dbSNP
rs538194895 297 dbSNP
rs1403733550 303 dbSNP
rs1290402008 306 dbSNP
rs749605164 308 dbSNP
rs138324982 309 dbSNP
rs959813580 315 dbSNP
rs1049414973 316 dbSNP
rs929226181 318 dbSNP
rs919067205 320 dbSNP
rs1149355 323 dbSNP
rs974209879 324 dbSNP
rs1415640165 330 dbSNP
rs1405884683 332 dbSNP
rs1390674888 338 dbSNP
rs1363848080 339 dbSNP
rs147124364 343 dbSNP
rs1299089444 346 dbSNP
rs1015619611 349 dbSNP
rs1428845543 350 dbSNP
rs910274758 351 dbSNP
rs1004635799 352 dbSNP
rs182448499 353 dbSNP
rs1313551045 361 dbSNP
rs1029997818 380 dbSNP
rs985937841 381 dbSNP
rs141528547 382 dbSNP
rs147884222 384 dbSNP
rs1446096282 387 dbSNP
rs1213128727 398 dbSNP
rs1238998230 406 dbSNP
rs1376269672 411 dbSNP
rs1445000764 413 dbSNP
rs532221061 420 dbSNP
rs899745517 426 dbSNP
rs1383284960 427 dbSNP
rs564976213 430 dbSNP
rs146496735 431 dbSNP
rs760014689 433 dbSNP
rs1159255475 437 dbSNP
rs1444331142 438 dbSNP
rs1384265281 443 dbSNP
rs746362497 444 dbSNP
rs1031816467 451 dbSNP
rs1399189472 453 dbSNP
rs1336388829 457 dbSNP
rs1360176935 461 dbSNP
rs1271056080 466 dbSNP
rs1000015528 468 dbSNP
rs1379791641 475 dbSNP
rs1241456701 476 dbSNP
rs780614995 489 dbSNP
rs1343563709 492 dbSNP
rs1349261801 495 dbSNP
rs1221768174 499 dbSNP
rs190237548 500 dbSNP
rs1304743618 507 dbSNP
rs1461632612 524 dbSNP
rs1202825999 530 dbSNP
rs1277427786 536 dbSNP
rs907395460 538 dbSNP
rs1182368781 543 dbSNP
rs1378913532 545 dbSNP
rs1468663930 548 dbSNP
rs1174576215 552 dbSNP
rs1430218518 554 dbSNP
rs1041462577 559 dbSNP
rs1023470885 565 dbSNP
rs1402822082 567 dbSNP
rs1448181982 567 dbSNP
rs1013038675 568 dbSNP
rs1328749432 577 dbSNP
rs1334724076 581 dbSNP
rs534078335 582 dbSNP
rs16940945 583 dbSNP
rs1055860516 585 dbSNP
rs185069575 590 dbSNP
rs897732644 591 dbSNP
rs572443899 594 dbSNP
rs944539843 595 dbSNP
rs140999215 605 dbSNP
rs1436201430 612 dbSNP
rs897304095 618 dbSNP
rs777265447 621 dbSNP
rs546200525 635 dbSNP
rs1269646816 641 dbSNP
rs1480234506 644 dbSNP
rs1174471592 645 dbSNP
rs116988556 647 dbSNP
rs914869602 648 dbSNP
rs941505275 655 dbSNP
rs908652960 661 dbSNP
rs1304440594 663 dbSNP
rs1345537014 666 dbSNP
rs1231376094 668 dbSNP
rs397740021 672 dbSNP
rs59068290 672 dbSNP
rs982849938 672 dbSNP
rs1483442886 673 dbSNP
rs955566965 680 dbSNP
rs1253990249 691 dbSNP
rs578041409 693 dbSNP
rs766213511 694 dbSNP
rs956390168 704 dbSNP
rs1032899121 707 dbSNP
rs1490202473 707 dbSNP
rs1265563052 708 dbSNP
rs1031911146 711 dbSNP
rs55800471 713 dbSNP
rs1192964006 717 dbSNP
rs1371636117 721 dbSNP
rs1358086717 723 dbSNP
rs1286093809 744 dbSNP
rs971966894 749 dbSNP
rs1459912944 755 dbSNP
rs1164761791 756 dbSNP
rs1227353372 762 dbSNP
rs150973539 762 dbSNP
rs1350574956 766 dbSNP
rs1386713317 773 dbSNP
rs1382397178 776 dbSNP
rs1013391776 780 dbSNP
rs1309303191 782 dbSNP
rs777435656 783 dbSNP
rs948277 793 dbSNP
rs1358863114 803 dbSNP
rs1014038935 813 dbSNP
rs1486321449 814 dbSNP
rs1204719510 816 dbSNP
rs895552932 831 dbSNP
rs1425922398 838 dbSNP
rs1028181842 842 dbSNP
rs752425194 861 dbSNP
rs182626893 865 dbSNP
rs1406903402 866 dbSNP
rs1385135827 870 dbSNP
rs1055488859 871 dbSNP
rs199912776 877 dbSNP
rs765014915 880 dbSNP
rs1364956228 887 dbSNP
rs948276 890 dbSNP
rs1382596551 894 dbSNP
rs1454346641 901 dbSNP
rs1040260393 904 dbSNP
rs1381969428 909 dbSNP
rs1044169656 918 dbSNP
rs748285475 922 dbSNP
rs1414360737 938 dbSNP
rs1317581467 942 dbSNP
rs1238691445 950 dbSNP
rs1259154362 954 dbSNP
rs1484472793 957 dbSNP
rs1008777151 978 dbSNP
rs1488465074 981 dbSNP
rs112732359 983 dbSNP
rs1247780329 988 dbSNP
rs1180989184 989 dbSNP
rs1224366626 995 dbSNP
rs1445670328 998 dbSNP
rs555604395 1005 dbSNP
rs777354838 1012 dbSNP
rs1038566448 1013 dbSNP
rs1470721421 1021 dbSNP
rs1267825071 1024 dbSNP
rs1405014584 1024 dbSNP
rs1450437906 1027 dbSNP
rs1227416477 1028 dbSNP
rs1299812574 1028 dbSNP
rs1390870897 1030 dbSNP
rs941536386 1030 dbSNP
rs1304903879 1039 dbSNP
rs1325963932 1043 dbSNP
rs1262924071 1048 dbSNP
rs1321838254 1049 dbSNP
rs1289721732 1054 dbSNP
rs1207322935 1056 dbSNP
rs1216946969 1058 dbSNP
rs369725460 1061 dbSNP
rs1275397103 1062 dbSNP
rs1480699936 1063 dbSNP
rs1438435728 1065 dbSNP
rs1418502918 1067 dbSNP
rs1386194262 1068 dbSNP
rs1247751443 1069 dbSNP
rs1395185469 1069 dbSNP
rs983349063 1070 dbSNP
rs1319632683 1072 dbSNP
rs1175396249 1073 dbSNP
rs1458030452 1076 dbSNP
rs1391070176 1080 dbSNP
rs1468012558 1088 dbSNP
rs1174110361 1090 dbSNP
rs1432698525 1092 dbSNP
rs1425913503 1093 dbSNP
rs1193431194 1095 dbSNP
rs1448141229 1098 dbSNP
rs1202952650 1099 dbSNP
rs1271138558 1099 dbSNP
rs1271937764 1099 dbSNP
rs1282876717 1099 dbSNP
rs1296527180 1099 dbSNP
rs1307453686 1099 dbSNP
rs1347408517 1099 dbSNP
rs1355065165 1099 dbSNP
rs1375307159 1099 dbSNP
rs1405841360 1099 dbSNP
rs1461385048 1099 dbSNP
rs537628486 1099 dbSNP
rs56656145 1099 dbSNP
rs71174180 1099 dbSNP
rs746807604 1099 dbSNP
rs749590306 1099 dbSNP
rs750340134 1099 dbSNP
rs756499185 1099 dbSNP
rs1213403752 1100 dbSNP
rs1317744138 1100 dbSNP
rs1361039708 1100 dbSNP
rs1361686691 1100 dbSNP
rs1372116776 1100 dbSNP
rs1217423359 1101 dbSNP
rs1222615879 1101 dbSNP
rs1290348870 1101 dbSNP
rs1449521355 1101 dbSNP
rs1247867785 1102 dbSNP
rs1209716073 1103 dbSNP
rs1465107538 1104 dbSNP
rs934133462 1109 dbSNP
rs1186639097 1114 dbSNP
rs1386988975 1117 dbSNP
rs77664990 1119 dbSNP
rs1207534235 1121 dbSNP
rs1319228022 1124 dbSNP
rs975450631 1124 dbSNP
rs1345015191 1125 dbSNP
rs946431983 1127 dbSNP
rs964014380 1129 dbSNP
rs1384225100 1136 dbSNP
rs1032930325 1139 dbSNP
rs978640360 1145 dbSNP
rs1353631503 1146 dbSNP
rs914984704 1147 dbSNP
rs1220927936 1151 dbSNP
rs1362944818 1152 dbSNP
rs1446262219 1157 dbSNP
rs1206614393 1160 dbSNP
rs1244699145 1174 dbSNP
rs967279657 1176 dbSNP
rs1182847413 1177 dbSNP
rs1020155376 1178 dbSNP
rs1471184058 1186 dbSNP
rs1159418884 1194 dbSNP
rs565509623 1195 dbSNP
rs934983744 1205 dbSNP
rs1407228864 1209 dbSNP
rs199502262 1215 dbSNP
rs895596253 1225 dbSNP
rs142618907 1228 dbSNP
rs148468292 1241 dbSNP
rs1001175372 1244 dbSNP
rs898796875 1247 dbSNP
rs1038599514 1265 dbSNP
rs1226115664 1274 dbSNP
rs971689818 1289 dbSNP
rs916032941 1290 dbSNP
rs1465673835 1291 dbSNP
rs1276393797 1293 dbSNP
rs887358073 1293 dbSNP
rs117982716 1294 dbSNP
rs1439444944 1294 dbSNP
rs1232309352 1297 dbSNP
rs952335626 1300 dbSNP
rs1471741315 1304 dbSNP
rs1201845215 1324 dbSNP
rs761899120 1325 dbSNP
rs1178309825 1335 dbSNP
rs1171387529 1344 dbSNP
rs1027691787 1345 dbSNP
rs571275008 1349 dbSNP
rs961984358 1354 dbSNP
rs1410978520 1356 dbSNP
rs1018904830 1357 dbSNP
rs1009206394 1361 dbSNP
rs1040152169 1378 dbSNP
rs1407672916 1391 dbSNP
rs1284797697 1402 dbSNP
rs535852764 1410 dbSNP
rs531500086 1414 dbSNP
rs1189717462 1419 dbSNP
rs779824524 1424 dbSNP
rs914273284 1428 dbSNP
rs1050802045 1441 dbSNP
rs1451750579 1446 dbSNP
rs1010722597 1450 dbSNP
rs756002445 1451 dbSNP
rs893671811 1463 dbSNP
rs146754346 1466 dbSNP
rs780549559 1467 dbSNP
rs190818196 1468 dbSNP
rs1480204206 1470 dbSNP
rs1197238402 1471 dbSNP
rs1375071410 1472 dbSNP
rs1476032792 1482 dbSNP
rs960120605 1483 dbSNP
rs763261899 1484 dbSNP
rs527567120 1486 dbSNP
rs947739563 1493 dbSNP
rs916145254 1495 dbSNP
rs1176680037 1501 dbSNP
rs1327967516 1515 dbSNP
rs1001207747 1523 dbSNP
rs115664532 1524 dbSNP
rs1229006055 1526 dbSNP
rs545380888 1532 dbSNP
rs578034311 1538 dbSNP
rs952237554 1552 dbSNP
rs1395725365 1553 dbSNP
rs1490248939 1560 dbSNP
rs143520840 1561 dbSNP
rs1264363956 1575 dbSNP
rs1447932909 1576 dbSNP
rs1193144462 1577 dbSNP
rs1388888518 1584 dbSNP
rs139803061 1585 dbSNP
rs770370592 1587 dbSNP
rs1369980775 1601 dbSNP
rs1386919853 1604 dbSNP
rs962120874 1605 dbSNP
rs942800006 1611 dbSNP
rs1018873666 1614 dbSNP
rs1169785391 1615 dbSNP
rs1432102807 1619 dbSNP
rs746471381 1623 dbSNP
rs1367144490 1626 dbSNP
rs1043108715 1628 dbSNP
rs1281087958 1631 dbSNP
rs1242967855 1639 dbSNP
rs1262679106 1641 dbSNP
rs1351615334 1644 dbSNP
rs953528616 1645 dbSNP
rs187244085 1646 dbSNP
rs1246506618 1649 dbSNP
rs1463064686 1650 dbSNP
rs1256400650 1654 dbSNP
rs1011276895 1656 dbSNP
rs1243291864 1659 dbSNP
rs1422698320 1662 dbSNP
rs182218003 1666 dbSNP
rs1365203519 1668 dbSNP
rs534262895 1671 dbSNP
rs1030844433 1676 dbSNP
rs999244641 1677 dbSNP
rs573200312 1678 dbSNP
rs777297454 1681 dbSNP
rs1250345321 1683 dbSNP
rs758115676 1684 dbSNP
rs145943660 1705 dbSNP
rs1386108455 1708 dbSNP
rs1454564822 1720 dbSNP
rs538590183 1724 dbSNP
rs927154568 1729 dbSNP
rs1394340272 1734 dbSNP
rs1309190449 1741 dbSNP
rs1336587447 1742 dbSNP
rs1227958497 1746 dbSNP
rs894836920 1751 dbSNP
rs747787967 1756 dbSNP
rs571270012 1757 dbSNP
rs190562609 1758 dbSNP
rs1236650891 1776 dbSNP
rs1243767037 1790 dbSNP
rs1263040905 1793 dbSNP
rs920739396 1795 dbSNP
rs1004520602 1804 dbSNP
rs950392627 1807 dbSNP
rs1180983974 1810 dbSNP
rs1409562430 1813 dbSNP
rs972219475 1823 dbSNP
rs1315142002 1824 dbSNP
rs1177124443 1825 dbSNP
rs1226727852 1828 dbSNP
rs1358540018 1838 dbSNP
rs1464426294 1843 dbSNP
rs186233818 1844 dbSNP
rs998875985 1847 dbSNP
rs754740475 1848 dbSNP
rs988002062 1854 dbSNP
rs1286650210 1861 dbSNP
rs567502840 1862 dbSNP
rs1347838901 1864 dbSNP
rs1224536470 1865 dbSNP
rs1412293761 1869 dbSNP
rs1300967302 1871 dbSNP
rs1029418281 1874 dbSNP
rs989376372 1875 dbSNP
rs1252614737 1885 dbSNP
rs1483092307 1890 dbSNP
rs1293364448 1893 dbSNP
rs957951983 1897 dbSNP
rs1030949312 1899 dbSNP
rs549188913 1903 dbSNP
rs1166654508 1909 dbSNP
rs1007050798 1924 dbSNP
rs904621325 1932 dbSNP
rs1410661133 1936 dbSNP
rs1182264614 1940 dbSNP
rs374712770 1941 dbSNP
rs1043139465 1947 dbSNP
rs906402231 1951 dbSNP
rs1209122671 1952 dbSNP
rs1488686477 1959 dbSNP
rs753737695 1978 dbSNP
rs1367716694 1980 dbSNP
rs566724033 1987 dbSNP
rs891758322 2000 dbSNP
rs1207121543 2003 dbSNP
rs1216893322 2009 dbSNP
rs1328744952 2009 dbSNP
rs1289107314 2012 dbSNP
rs1296877501 2013 dbSNP
rs1012417187 2021 dbSNP
rs1241250960 2023 dbSNP
rs1057126353 2026 dbSNP
rs894770674 2030 dbSNP
rs574906984 2042 dbSNP
rs1227054790 2051 dbSNP
rs938639730 2065 dbSNP
rs927196695 2071 dbSNP
rs1221834734 2073 dbSNP
rs1188261664 2074 dbSNP
rs1329370704 2079 dbSNP
rs1420169459 2080 dbSNP
rs1301226080 2082 dbSNP
rs979936377 2099 dbSNP
rs779980640 2100 dbSNP
rs1048554381 2102 dbSNP
rs1318944709 2109 dbSNP
rs1164338791 2110 dbSNP
rs930868876 2116 dbSNP
rs1348539102 2117 dbSNP
rs35698834 2117 dbSNP
rs181252021 2124 dbSNP
rs983128277 2126 dbSNP
rs1365138568 2130 dbSNP
rs1387416452 2132 dbSNP
rs751725889 2139 dbSNP
rs1294846664 2150 dbSNP
rs1360970205 2163 dbSNP
rs149472680 2174 dbSNP
rs1470896247 2178 dbSNP
rs562861278 2194 dbSNP
rs764254125 2197 dbSNP
rs1030436151 2209 dbSNP
rs940861187 2211 dbSNP
rs544729846 2217 dbSNP
rs1464394223 2220 dbSNP
rs1186576990 2228 dbSNP
rs1245110337 2231 dbSNP
rs1473149318 2234 dbSNP
rs529341117 2238 dbSNP
rs1433686709 2248 dbSNP
rs932063611 2252 dbSNP
rs921934710 2255 dbSNP
rs3809899 2257 dbSNP
rs1186403091 2260 dbSNP
rs568700948 2261 dbSNP
rs904667285 2263 dbSNP
rs372174510 2264 dbSNP
rs139093482 2267 dbSNP
rs1207081376 2270 dbSNP
rs978035316 2271 dbSNP
rs1283049963 2274 dbSNP
rs765729251 2279 dbSNP
rs1025230989 2293 dbSNP
rs1225052584 2294 dbSNP
rs1255430684 2295 dbSNP
rs1413759567 2301 dbSNP
rs558397217 2302 dbSNP
rs577411507 2304 dbSNP
rs117709261 2307 dbSNP
rs1442883548 2310 dbSNP
rs76736387 2317 dbSNP
rs1471314290 2318 dbSNP
rs1434855194 2326 dbSNP
rs938686825 2327 dbSNP
rs188852723 2333 dbSNP
rs896867069 2342 dbSNP
rs1332943459 2347 dbSNP
rs1356914881 2349 dbSNP
rs1036566080 2354 dbSNP
rs1314156208 2363 dbSNP
rs1288550768 2381 dbSNP
rs144491010 2381 dbSNP
rs1349698984 2384 dbSNP
rs1226368947 2389 dbSNP
rs1005101494 2414 dbSNP
rs1345630904 2421 dbSNP
rs983287885 2428 dbSNP
rs923038489 2455 dbSNP
rs929088371 2455 dbSNP
rs976162233 2464 dbSNP
rs552721673 2467 dbSNP
rs771405036 2468 dbSNP
rs534827472 2469 dbSNP
rs1396783860 2474 dbSNP
rs1166591655 2476 dbSNP
rs1018555962 2481 dbSNP
rs150757121 2508 dbSNP
rs1422490983 2511 dbSNP
rs761084208 2519 dbSNP
rs752914017 2523 dbSNP
rs921990640 2528 dbSNP
rs1308062058 2531 dbSNP
rs1021824010 2533 dbSNP
rs141939763 2553 dbSNP
rs1053910037 2568 dbSNP
rs936645790 2570 dbSNP
rs772839661 2575 dbSNP
rs1010399991 2578 dbSNP
rs1331470469 2587 dbSNP
rs768853352 2590 dbSNP
rs567365253 2591 dbSNP
rs1201078774 2595 dbSNP
rs1273930602 2603 dbSNP
rs138500469 2604 dbSNP
rs1273143554 2612 dbSNP
rs1224986878 2617 dbSNP
rs1268573115 2620 dbSNP
rs1451358516 2621 dbSNP
rs1197426821 2623 dbSNP
rs917730073 2628 dbSNP
rs1450593516 2637 dbSNP
rs905846153 2646 dbSNP
rs1388949095 2654 dbSNP
rs1343334449 2656 dbSNP
rs991047238 2658 dbSNP
rs1386029909 2659 dbSNP
rs1435656419 2660 dbSNP
rs532945592 2660 dbSNP
rs535143674 2660 dbSNP
rs1006119320 2664 dbSNP
rs1340131149 2666 dbSNP
rs959259670 2668 dbSNP
rs1266234108 2678 dbSNP
rs1048057096 2679 dbSNP
rs1286703084 2684 dbSNP
rs1188468982 2693 dbSNP
rs929120639 2695 dbSNP
rs923016221 2701 dbSNP
rs1414895862 2702 dbSNP
rs1188963044 2713 dbSNP
rs771551533 2723 dbSNP
rs747842926 2728 dbSNP
rs1457040493 2730 dbSNP
rs995252090 2733 dbSNP
rs1161261643 2745 dbSNP
rs960995948 2747 dbSNP
rs1040099715 2748 dbSNP
rs1457765571 2762 dbSNP
rs943028396 2769 dbSNP
rs533932563 2777 dbSNP
rs1397878777 2778 dbSNP
rs1005070470 2779 dbSNP
rs1313481181 2782 dbSNP
rs979072816 2786 dbSNP
rs890718319 2787 dbSNP
rs1052044829 2788 dbSNP
rs1242806417 2796 dbSNP
rs1390622230 2804 dbSNP
rs1330205850 2805 dbSNP
rs778484913 2806 dbSNP
rs968996931 2818 dbSNP
rs768449614 2819 dbSNP
rs566918114 2824 dbSNP
rs1201683147 2831 dbSNP
rs147108392 2833 dbSNP
rs923913229 2834 dbSNP
rs533064326 2839 dbSNP
rs1002943773 2840 dbSNP
rs1472781703 2843 dbSNP
rs75077381 2847 dbSNP
rs769630227 2848 dbSNP
rs1205146249 2849 dbSNP
rs1483663654 2850 dbSNP
rs949442169 2852 dbSNP
rs917809437 2853 dbSNP
rs1022961515 2857 dbSNP
rs1290423604 2864 dbSNP
rs1006171350 2865 dbSNP
rs1228198609 2868 dbSNP
rs887703641 2873 dbSNP
rs550698037 2874 dbSNP
rs1226939167 2876 dbSNP
rs1047427 2877 dbSNP
rs1283272498 2879 dbSNP
rs1256147723 2894 dbSNP
rs1482627800 2895 dbSNP
rs1198420439 2900 dbSNP
rs184775927 2907 dbSNP
rs540443908 2911 dbSNP
rs937835427 2913 dbSNP
rs919779920 2915 dbSNP
rs973755475 2921 dbSNP
rs756132496 2924 dbSNP
rs910300189 2935 dbSNP
rs1330702921 2937 dbSNP
rs1464630298 2942 dbSNP
rs1309889812 2945 dbSNP
rs1043444204 2949 dbSNP
rs1409382279 2952 dbSNP
rs1306633024 2954 dbSNP
rs1015187515 2984 dbSNP
rs1370178968 2994 dbSNP
rs1389663233 2996 dbSNP
rs1165941609 2997 dbSNP
rs986408775 3000 dbSNP
rs1310906438 3005 dbSNP
rs1231476303 3007 dbSNP
rs955104850 3013 dbSNP
rs1181506863 3014 dbSNP
rs1342448979 3020 dbSNP
rs75513868 3024 dbSNP
rs1231027419 3028 dbSNP
rs1489321401 3031 dbSNP
rs1235121224 3034 dbSNP
rs996449103 3036 dbSNP
rs750304457 3044 dbSNP
rs934897150 3047 dbSNP
rs1170580035 3049 dbSNP
rs900627865 3069 dbSNP
rs928844806 3073 dbSNP
rs1429433523 3077 dbSNP
rs1166916575 3078 dbSNP
rs1352035200 3092 dbSNP
rs1032529571 3115 dbSNP
rs1000923086 3116 dbSNP
rs1437653280 3123 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_ControlB_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cgaaagagccucgagUCUCGUu 5'
                         |||||| 
Target 5' --------------aAGAGCAa 3'
1 - 8
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_ControlB_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control B
Location of target site ENST00000322247.3 | 3UTR | AAGAGCAAAACCAACC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
91 hsa-miR-5691 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT091162 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT242227 TTC9 tetratricopeptide repeat domain 9 2 4
MIRT246192 TXNIP thioredoxin interacting protein 2 2
MIRT251553 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT387267 SOX9 SRY-box 9 2 2
MIRT463486 ZC3H11A zinc finger CCCH-type containing 11A 2 12
MIRT494446 BTG2 BTG anti-proliferation factor 2 2 2
MIRT496478 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 2 2
MIRT501825 NCOA3 nuclear receptor coactivator 3 2 2
MIRT503072 C6orf120 chromosome 6 open reading frame 120 2 2
MIRT504755 TEP1 telomerase associated protein 1 2 4
MIRT505971 RAB11FIP1 RAB11 family interacting protein 1 2 4
MIRT511868 GOLGA7 golgin A7 2 6
MIRT512900 UBL4A ubiquitin like 4A 2 2
MIRT513048 LYPD6 LY6/PLAUR domain containing 6 2 6
MIRT523772 FAM83D family with sequence similarity 83 member D 2 2
MIRT525126 RPS11 ribosomal protein S11 2 2
MIRT525816 VIMP selenoprotein S 2 10
MIRT531222 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT531729 SLC2A9 solute carrier family 2 member 9 2 2
MIRT536282 LIMA1 LIM domain and actin binding 1 2 2
MIRT537291 G3BP1 G3BP stress granule assembly factor 1 2 2
MIRT537724 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT547940 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT554177 SLC35E2B solute carrier family 35 member E2B 2 2
MIRT555015 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT576717 Wars tryptophanyl-tRNA synthetase 2 2
MIRT607484 HEBP2 heme binding protein 2 2 2
MIRT610786 KLK2 kallikrein related peptidase 2 2 2
MIRT611491 ZNF440 zinc finger protein 440 2 2
MIRT613986 DBT dihydrolipoamide branched chain transacylase E2 2 2
MIRT615782 KIAA0319L KIAA0319 like 2 2
MIRT620563 WBSCR27 methyltransferase like 27 2 4
MIRT624157 DGKE diacylglycerol kinase epsilon 2 2
MIRT626088 MKLN1 muskelin 1 2 2
MIRT629481 GSN gelsolin 2 2
MIRT636645 CDK4 cyclin dependent kinase 4 2 2
MIRT638074 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT638442 PLXDC2 plexin domain containing 2 2 2
MIRT641025 KLHL7 kelch like family member 7 2 2
MIRT641539 MOCOS molybdenum cofactor sulfurase 2 2
MIRT643004 ZNF829 zinc finger protein 829 2 2
MIRT643092 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT644979 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT645912 PLXNA3 plexin A3 2 2
MIRT646605 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT648033 FADS6 fatty acid desaturase 6 2 2
MIRT657491 HBEGF heparin binding EGF like growth factor 2 2
MIRT658381 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT659695 CD200 CD200 molecule 2 2
MIRT661276 TEX9 testis expressed 9 2 2
MIRT661348 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT662948 JPH2 junctophilin 2 2 2
MIRT663225 PPY pancreatic polypeptide 2 2
MIRT663280 SPN sialophorin 2 2
MIRT663335 ZNF74 zinc finger protein 74 2 2
MIRT664344 C16orf45 chromosome 16 open reading frame 45 2 2
MIRT664855 TBRG4 transforming growth factor beta regulator 4 2 2
MIRT665484 VPS53 VPS53, GARP complex subunit 2 2
MIRT666428 SH2B3 SH2B adaptor protein 3 2 2
MIRT668162 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT670170 CCDC142 coiled-coil domain containing 142 2 2
MIRT671277 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT672284 GP2 glycoprotein 2 2 2
MIRT672435 RAB10 RAB10, member RAS oncogene family 2 2
MIRT672646 SLC25A16 solute carrier family 25 member 16 2 4
MIRT672760 UBE2V2 ubiquitin conjugating enzyme E2 V2 2 2
MIRT672834 AKR7L aldo-keto reductase family 7 like (gene/pseudogene) 2 2
MIRT672841 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT673080 AK1 adenylate kinase 1 2 2
MIRT673148 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT673323 THAP1 THAP domain containing 1 2 2
MIRT673893 DCTN6 dynactin subunit 6 2 2
MIRT674182 PLEKHM3 pleckstrin homology domain containing M3 2 2
MIRT674607 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT674740 SLC16A1 solute carrier family 16 member 1 2 2
MIRT675140 MOGAT1 monoacylglycerol O-acyltransferase 1 2 4
MIRT675194 NKPD1 NTPase KAP family P-loop domain containing 1 2 2
MIRT675886 SNAP29 synaptosome associated protein 29 2 2
MIRT679163 PSMB2 proteasome subunit beta 2 2 2
MIRT680337 ZNF281 zinc finger protein 281 2 2
MIRT706699 GPR155 G protein-coupled receptor 155 2 2
MIRT706911 THAP6 THAP domain containing 6 2 2
MIRT707880 SLC45A4 solute carrier family 45 member 4 2 2
MIRT709097 SEPT4 septin 4 2 2
MIRT709408 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT710845 FAM210A family with sequence similarity 210 member A 2 2
MIRT711358 VPS8 VPS8, CORVET complex subunit 2 2
MIRT718590 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT723649 RPTN repetin 2 2
MIRT724208 NUP205 nucleoporin 205 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-5691 Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)

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