pre-miRNA Information
pre-miRNA hsa-mir-6867   
Genomic Coordinates chr17: 40193597 - 40193663
Description Homo sapiens miR-6867 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6867-3p
Sequence 47| CUCUCCCUCUUUACCCACUAG |67
Evidence Experimental
Experiments Meta-analysis
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM7811173 21 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1403216522 1 dbSNP
rs781776276 3 dbSNP
rs202050374 4 dbSNP
rs367842831 5 dbSNP
rs1223489976 6 dbSNP
rs907256096 9 dbSNP
rs753257137 14 dbSNP
rs757843554 17 dbSNP
rs371369162 18 dbSNP
Putative Targets

Gene Information
Gene Symbol CYYR1   
Synonyms C21orf95
Description cysteine and tyrosine rich 1
Transcript NM_052954   
Expression
Putative miRNA Targets on CYYR1
3'UTR of CYYR1
(miRNA target sites are highlighted)
>CYYR1|NM_052954|3'UTR
   1 TCTATCTCCCAGAACAGAACATGTGCCAATGGGCGATCTTGCCTGGAATAAAATGCCTCTACTCAGAAACAGGCAGGAAA
  81 GAATTGCTCCAAGGAATACTTTTTGGGGTCAGATAATGTGTCAGGTGGAATATCCCTGCTAGGAGATATAGGATTTCTAC
 161 TCTGCTCAAAGCTGACCCCATCTGGAGTATTAATGTTTGGTTCTATGGAACCACATTTTAAGAGATCTGCTGATCCACCT
 241 AAGCACATTCAGGGAAGAGTAATGTAATTGACAAAATATCTGATAATCATGTTGTTTAAGGGCTAGGTGAAGAAAGTTTC
 321 AGTATTGATCCTGGAAAAAAAGAAGATCTAAGTAGGATGGGAGAATGATTTGGCCCACACAAGGAAGCAACTTTATTCTA
 401 TATAGCTTTAAAAGTCAGAACTAGAATTGTTCATTCTTTCATTCATCAATAAATGTATTTTGAGTGCCTAAGAGTTTACT
 481 ATGTGCCTAGCACTGTTTGAGGTCCTGATGGAAGTTACAGGACGGGTACTCTGGTTTTAGTACAAGAAAGAGCAATGACT
 561 AGATTGCTTTGTGAAGCTCTTGGTAGAGACACGCTCCAGAAGGGATAACAAAATCAAATAGTAGATGGGTTCATTGGGCC
 641 TCAGAAGTTCTGCTCGTATTTTAGGTGGGTGTGAAGTGAATTTCTATATGTCCAGGAGTGAATACAACAGAAAGAGTTGG
 721 ATCTTATTTATTTAATTAGGGAGTTAAAACAAGACCAAAAAGACTCAACAGCCGCTTGAAGCCAAGAACTCTTCAATGCC
 801 AGCTACTGCCACCTAAAAATCATCTGGCTTTATAGTGGATCAGAATAAAGGTTATTCTAACTGTGGGGAGAAAAAAAAAA
 881 TTGTATCAAGTTCCACAGGTAGCAGACACTTCACTTCCAAGTAAAAGATGAGAAATCAATTATTCCCACAGGATTTTAGG
 961 TCAGGGAGCAAAAATCTCAGAACTTGACCATGAAGATACACAACAGACTCGCAAAAATAAAGTGGGAAATGAAGTTCAGA
1041 TTCCCTTCTGTAGATTTCCTTAAAACTATTATTTTTTTCTTCTTCGTAAAATTTTGATAATCTGTTCTCTTAAAAAAGTT
1121 AATGACACAATTAAGATACTGACATCAAATTGTTGCCTTTTACCAAAATGCAAATTTTATGAAGTGCCTACCTTTATATG
1201 TATAAAGCATTTAATAAATAATTCTAATGTGCCATATTTTGCTGTGAGTGACCTTAACATTTATATTTTTATATGAATTG
1281 TTTCATGTATTTATAAAAATTGTATATTGAACATTGGAAATAGATGATTAGATTTTTGTGTCATTTTACAATTAAATCTA
1361 AAATGCTTAATCCAATATCATCATCAAAATTCAGTGAAATCCCAAAACAGTGCCAAGAATTTTGCTGAATGAAACAATCA
1441 AACAAAGCATTTTAAGGTGTAAGTTATAGTACCTGTACTTGCAGATAAGAAGCTTACTATATCATTATTATAAGTAGCAT
1521 ATATTACTTTCAAATACCTATATTAGAAAGATATTGATCTGACTGAAATATAACCTACCTGCCAGTAAGGTCCAAAGGCT
1601 GAATTTGTTTTGAATGAGTTCCTTGATCTTTAAGCACTGATGATTTTCTTATATATGAGGATGCAAAGCATTCAAGAGTT
1681 TCAGCCTGTTCTGGTGAGGGGCTCCCTGACTTACATAAAGTTTTCAGTGCAATTTTAATAGTACATATGCTTTAATTTAT
1761 TTTTCTTCTGCGTGTGGTCAGACCCAATTACACTGTGGCTAAGACTCTCAAAGTGCCAGGGTTTCTGTGATGATTCTGAG
1841 AATGCTGAATACAAATATACCTTATATTCTTTAAGGAAAACGGAAAGGAAAGATCAGCAGAAATAGGGTTTTCTCATCTT
1921 CACCATCAATAAACATTTATTGCGTACCTCCTATATTCTGCAAATTTTCCCCAAATAGAAGCCAGTTCAGTCCACACCAT
2001 CTCTTCTTTGAGTTGTTTATGGCCTCCCTTAAGGCATTTTACAAACCCATAAGCCTACAATAGATGAGTATTTTTACTAT
2081 TTGTATTAAGTGTCATAATAGCATCAATGTGCACATTACCAGTATAGACTGTTGGAGTTCACTGATTGTTTTCATAGATG
2161 ATGCTTCTTGGGGAAAAATAGTATAGGATGTGAAAGTTTTGAATTACGGTTATTTAAAAACTAACATTTGCTATGGCCAA
2241 AGTGTTTACAATAAGCAATAAAGTGAAAGAACCTATTATAACACAGATTATAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaucacccAUUUCUCCCUCuc 5'
                  |||  ||||||  
Target 5' tatttattTAATTAGGGAGtt 3'
725 - 745 129.00 -9.20
2
miRNA  3' gaucacccAUU--UCUCCCUCUc 5'
                  |||  : :|||||| 
Target 5' ggttattcTAACTGTGGGGAGAa 3'
850 - 872 127.00 -9.10
3
miRNA  3' gaucacccAUUUC--UCCCUCuc 5'
                  | |:|  ||||||  
Target 5' acaggattTTAGGTCAGGGAGca 3'
948 - 970 123.00 -10.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN13878475 2 COSMIC
COSN30115080 6 COSMIC
COSN30473679 9 COSMIC
COSN30481625 14 COSMIC
COSN30128919 19 COSMIC
COSN30455963 20 COSMIC
COSN30529188 26 COSMIC
COSN17154083 27 COSMIC
COSN30166155 29 COSMIC
COSN31493445 38 COSMIC
COSN30496517 39 COSMIC
COSN30467739 57 COSMIC
COSN30461487 62 COSMIC
COSN13878471 64 COSMIC
COSN30527895 69 COSMIC
COSN30451324 72 COSMIC
COSN13878470 77 COSMIC
COSN30102899 77 COSMIC
COSN30122899 80 COSMIC
COSN30485418 81 COSMIC
COSN30451251 89 COSMIC
COSN30489826 93 COSMIC
COSN30489384 94 COSMIC
COSN30183148 99 COSMIC
COSN29796454 116 COSMIC
COSN30461489 124 COSMIC
COSN30106774 179 COSMIC
COSN27135524 335 COSMIC
COSN19054430 700 COSMIC
COSN22921461 824 COSMIC
COSN7142174 842 COSMIC
COSN23038915 871 COSMIC
COSN29973652 925 COSMIC
COSN31961907 949 COSMIC
COSN28961514 995 COSMIC
COSN7142173 1011 COSMIC
COSN5983788 1034 COSMIC
COSN30414202 1118 COSMIC
COSN16456590 1291 COSMIC
COSN7142172 1410 COSMIC
COSN22522006 1436 COSMIC
COSN5983787 1527 COSMIC
COSN17442633 1577 COSMIC
COSN6422521 1883 COSMIC
COSN22905995 1960 COSMIC
COSN25424262 2077 COSMIC
COSN16240437 2202 COSMIC
COSN27358455 2282 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs760291319 1 dbSNP
rs1247071505 6 dbSNP
rs752414582 8 dbSNP
rs1322061949 9 dbSNP
rs966236486 10 dbSNP
rs749008286 12 dbSNP
rs369295653 15 dbSNP
rs1218128748 16 dbSNP
rs773986577 20 dbSNP
rs1272412526 24 dbSNP
rs377536476 25 dbSNP
rs762954770 26 dbSNP
rs17002187 27 dbSNP
rs151171541 29 dbSNP
rs372170574 30 dbSNP
rs13052857 31 dbSNP
rs13052856 32 dbSNP
rs1254331048 33 dbSNP
rs781485569 34 dbSNP
rs199720360 35 dbSNP
rs780099597 39 dbSNP
rs778243821 43 dbSNP
rs746349132 46 dbSNP
rs923880936 55 dbSNP
rs1305790126 56 dbSNP
rs905444046 61 dbSNP
rs1409853810 63 dbSNP
rs1045294697 78 dbSNP
rs946593047 81 dbSNP
rs915081410 84 dbSNP
rs569024240 86 dbSNP
rs1367672221 90 dbSNP
rs758830765 93 dbSNP
rs183308924 99 dbSNP
rs533321787 100 dbSNP
rs1249936024 103 dbSNP
rs959056023 106 dbSNP
rs1221787842 108 dbSNP
rs1034416169 119 dbSNP
rs981874387 125 dbSNP
rs1489534571 132 dbSNP
rs1192834452 133 dbSNP
rs1036467296 141 dbSNP
rs940743068 149 dbSNP
rs887813594 150 dbSNP
rs1166509321 151 dbSNP
rs753078419 160 dbSNP
rs1162593989 164 dbSNP
rs1429964165 164 dbSNP
rs375596323 179 dbSNP
rs971375227 187 dbSNP
rs1266393194 192 dbSNP
rs576779627 192 dbSNP
rs765427597 193 dbSNP
rs1235588243 200 dbSNP
rs564978852 201 dbSNP
rs1361881960 208 dbSNP
rs1005134929 223 dbSNP
rs191048525 226 dbSNP
rs887989439 228 dbSNP
rs1027832231 233 dbSNP
rs1213044303 242 dbSNP
rs1356940819 242 dbSNP
rs1289940051 246 dbSNP
rs996328145 247 dbSNP
rs219643 253 dbSNP
rs931933172 256 dbSNP
rs1265909855 259 dbSNP
rs921859918 261 dbSNP
rs1040103092 272 dbSNP
rs1186640034 275 dbSNP
rs1249640496 277 dbSNP
rs1009006767 278 dbSNP
rs1335775936 279 dbSNP
rs1182596111 281 dbSNP
rs902186851 287 dbSNP
rs1406541199 297 dbSNP
rs753967800 304 dbSNP
rs568868439 313 dbSNP
rs562238685 325 dbSNP
rs185954373 336 dbSNP
rs1389985764 337 dbSNP
rs1323196301 338 dbSNP
rs1452449432 347 dbSNP
rs915130704 347 dbSNP
rs1282574785 349 dbSNP
rs1055388004 359 dbSNP
rs1228925314 360 dbSNP
rs988605710 367 dbSNP
rs927399786 369 dbSNP
rs1285957438 380 dbSNP
rs760824288 390 dbSNP
rs773348781 417 dbSNP
rs981540394 421 dbSNP
rs957331733 429 dbSNP
rs1032719415 435 dbSNP
rs182829858 436 dbSNP
rs143100369 445 dbSNP
rs767529730 449 dbSNP
rs952285194 457 dbSNP
rs576597536 458 dbSNP
rs1196926002 472 dbSNP
rs1014230985 474 dbSNP
rs142060580 481 dbSNP
rs1332646344 494 dbSNP
rs1216132665 501 dbSNP
rs1327464345 502 dbSNP
rs554451224 508 dbSNP
rs191044338 511 dbSNP
rs1267910559 519 dbSNP
rs2830239 523 dbSNP
rs1297880247 525 dbSNP
rs546801413 526 dbSNP
rs1005005674 528 dbSNP
rs887854045 532 dbSNP
rs1290080113 541 dbSNP
rs1230489383 551 dbSNP
rs115409952 556 dbSNP
rs931986979 562 dbSNP
rs1276203709 565 dbSNP
rs553346111 566 dbSNP
rs768291643 576 dbSNP
rs1040304034 578 dbSNP
rs147569763 592 dbSNP
rs1010505585 593 dbSNP
rs219642 600 dbSNP
rs1319723681 605 dbSNP
rs879143865 609 dbSNP
rs1480378515 615 dbSNP
rs1171391459 626 dbSNP
rs114334580 627 dbSNP
rs537617941 628 dbSNP
rs935801470 634 dbSNP
rs1169928753 641 dbSNP
rs1368967679 646 dbSNP
rs927815660 655 dbSNP
rs569039808 656 dbSNP
rs775068702 659 dbSNP
rs1273062135 662 dbSNP
rs558534976 663 dbSNP
rs186242798 674 dbSNP
rs566819993 676 dbSNP
rs561183072 679 dbSNP
rs1247782700 686 dbSNP
rs1023949425 690 dbSNP
rs1206902108 694 dbSNP
rs547792014 707 dbSNP
rs1447184102 710 dbSNP
rs371812343 712 dbSNP
rs77041278 714 dbSNP
rs745379605 716 dbSNP
rs887906433 722 dbSNP
rs1186324062 727 dbSNP
rs1027711481 729 dbSNP
rs1431824560 735 dbSNP
rs1169514704 739 dbSNP
rs568432845 740 dbSNP
rs996185888 753 dbSNP
rs1019121038 754 dbSNP
rs1008993293 763 dbSNP
rs542914924 766 dbSNP
rs1363020825 773 dbSNP
rs575311560 774 dbSNP
rs1008856880 785 dbSNP
rs1296559115 788 dbSNP
rs1431258939 808 dbSNP
rs531771598 812 dbSNP
rs1230146208 822 dbSNP
rs1354961508 823 dbSNP
rs1207567440 824 dbSNP
rs891700981 829 dbSNP
rs1010558004 832 dbSNP
rs893466231 833 dbSNP
rs144992751 836 dbSNP
rs1002128356 845 dbSNP
rs1414135599 850 dbSNP
rs1451781684 854 dbSNP
rs181926961 864 dbSNP
rs935824516 866 dbSNP
rs1046277077 881 dbSNP
rs939809570 881 dbSNP
rs1175665170 883 dbSNP
rs1392741545 885 dbSNP
rs925753168 893 dbSNP
rs1386179399 895 dbSNP
rs1044181998 899 dbSNP
rs948439421 902 dbSNP
rs916946161 903 dbSNP
rs1448176638 905 dbSNP
rs886544442 909 dbSNP
rs1339532201 916 dbSNP
rs1241941097 917 dbSNP
rs1047828479 925 dbSNP
rs532642003 927 dbSNP
rs1187642799 940 dbSNP
rs560445500 941 dbSNP
rs961036408 946 dbSNP
rs920610427 956 dbSNP
rs908122131 967 dbSNP
rs1266851555 974 dbSNP
rs1209762478 975 dbSNP
rs975117365 975 dbSNP
rs1255673247 977 dbSNP
rs539806931 992 dbSNP
rs574397422 993 dbSNP
rs866711523 995 dbSNP
rs912108692 1003 dbSNP
rs1027764324 1010 dbSNP
rs779366221 1011 dbSNP
rs1485178012 1014 dbSNP
rs1280406248 1022 dbSNP
rs966837611 1024 dbSNP
rs996238227 1026 dbSNP
rs554322640 1032 dbSNP
rs76236577 1035 dbSNP
rs219641 1038 dbSNP
rs558714547 1043 dbSNP
rs1335839454 1044 dbSNP
rs538863967 1051 dbSNP
rs219640 1055 dbSNP
rs776763822 1057 dbSNP
rs906468503 1060 dbSNP
rs1286937276 1066 dbSNP
rs1331866954 1070 dbSNP
rs1000085472 1073 dbSNP
rs1024877470 1079 dbSNP
rs1004075600 1084 dbSNP
rs766436363 1085 dbSNP
rs886931651 1086 dbSNP
rs1482737364 1090 dbSNP
rs1180138431 1102 dbSNP
rs553320426 1104 dbSNP
rs376931111 1112 dbSNP
rs1376837069 1113 dbSNP
rs34762725 1118 dbSNP
rs397758396 1118 dbSNP
rs916993402 1121 dbSNP
rs1173895690 1124 dbSNP
rs1171664199 1125 dbSNP
rs199978555 1138 dbSNP
rs1412070177 1146 dbSNP
rs1351841203 1161 dbSNP
rs943348830 1169 dbSNP
rs1301266539 1175 dbSNP
rs756301296 1179 dbSNP
rs534135278 1181 dbSNP
rs1184355865 1184 dbSNP
rs912175922 1191 dbSNP
rs939700666 1201 dbSNP
rs1341763929 1202 dbSNP
rs573076634 1203 dbSNP
rs1257837745 1208 dbSNP
rs1276843352 1214 dbSNP
rs1483454112 1232 dbSNP
rs1177703077 1238 dbSNP
rs1266591337 1248 dbSNP
rs1431172829 1251 dbSNP
rs1200760339 1253 dbSNP
rs1487704701 1254 dbSNP
rs1263268029 1263 dbSNP
rs1428670741 1266 dbSNP
rs1166382289 1270 dbSNP
rs987675736 1271 dbSNP
rs1189666359 1283 dbSNP
rs1462055002 1285 dbSNP
rs189482989 1286 dbSNP
rs1366145292 1299 dbSNP
rs1388850382 1300 dbSNP
rs548334428 1305 dbSNP
rs1304589733 1306 dbSNP
rs1364990160 1307 dbSNP
rs1226447833 1316 dbSNP
rs1277114498 1321 dbSNP
rs1250285219 1324 dbSNP
rs767654169 1325 dbSNP
rs1309257526 1326 dbSNP
rs1220941315 1332 dbSNP
rs914073395 1336 dbSNP
rs1232494428 1348 dbSNP
rs1335267149 1351 dbSNP
rs1211606273 1357 dbSNP
rs1253371550 1360 dbSNP
rs1295294315 1366 dbSNP
rs989573073 1375 dbSNP
rs1408248095 1380 dbSNP
rs1391647713 1381 dbSNP
rs368724816 1384 dbSNP
rs1428543870 1388 dbSNP
rs374370837 1390 dbSNP
rs1298884730 1394 dbSNP
rs531829295 1409 dbSNP
rs1348698197 1410 dbSNP
rs1459881072 1410 dbSNP
rs1327237078 1415 dbSNP
rs1388352732 1419 dbSNP
rs1433350306 1428 dbSNP
rs201508500 1444 dbSNP
rs1362944056 1447 dbSNP
rs980486034 1447 dbSNP
rs1227769719 1448 dbSNP
rs1310623406 1464 dbSNP
rs140214074 1465 dbSNP
rs1246882085 1466 dbSNP
rs2830238 1471 dbSNP
rs1464227222 1477 dbSNP
rs1019452061 1478 dbSNP
rs1489563866 1494 dbSNP
rs1254703060 1495 dbSNP
rs185806131 1495 dbSNP
rs1233021264 1498 dbSNP
rs1026834542 1501 dbSNP
rs1180977299 1502 dbSNP
rs956248456 1505 dbSNP
rs1410982384 1516 dbSNP
rs1031661497 1518 dbSNP
rs560383993 1521 dbSNP
rs1249208904 1528 dbSNP
rs1166193768 1531 dbSNP
rs1411888957 1533 dbSNP
rs1455929258 1538 dbSNP
rs1000139607 1540 dbSNP
rs79368941 1546 dbSNP
rs1323000806 1551 dbSNP
rs536508468 1552 dbSNP
rs1447544771 1560 dbSNP
rs1301373736 1562 dbSNP
rs1478108 1569 dbSNP
rs1415491834 1570 dbSNP
rs904638467 1577 dbSNP
rs1039518549 1579 dbSNP
rs763134848 1591 dbSNP
rs1226541985 1601 dbSNP
rs1286064278 1603 dbSNP
rs1317361223 1609 dbSNP
rs145842134 1612 dbSNP
rs219639 1618 dbSNP
rs1483911621 1621 dbSNP
rs75654436 1623 dbSNP
rs219638 1628 dbSNP
rs1316611989 1635 dbSNP
rs914125518 1636 dbSNP
rs558722037 1639 dbSNP
rs939772606 1642 dbSNP
rs886798238 1646 dbSNP
rs1414325732 1657 dbSNP
rs1225578561 1658 dbSNP
rs1361137264 1665 dbSNP
rs1415431706 1675 dbSNP
rs868654423 1680 dbSNP
rs1348757220 1688 dbSNP
rs1407903790 1693 dbSNP
rs1281274742 1709 dbSNP
rs1373699188 1710 dbSNP
rs1365623232 1713 dbSNP
rs1325762908 1718 dbSNP
rs770308996 1720 dbSNP
rs1442306202 1725 dbSNP
rs17002178 1728 dbSNP
rs1319045056 1738 dbSNP
rs936813471 1740 dbSNP
rs1455307645 1747 dbSNP
rs58239537 1748 dbSNP
rs1159417036 1756 dbSNP
rs1477876825 1761 dbSNP
rs755437682 1771 dbSNP
rs553261405 1772 dbSNP
rs974927301 1777 dbSNP
rs17002176 1796 dbSNP
rs1168256218 1798 dbSNP
rs1368780035 1801 dbSNP
rs1431706100 1808 dbSNP
rs1192858035 1809 dbSNP
rs917591352 1818 dbSNP
rs1468910617 1821 dbSNP
rs1355066977 1833 dbSNP
rs780471225 1837 dbSNP
rs912035724 1838 dbSNP
rs1435449116 1866 dbSNP
rs1272829097 1867 dbSNP
rs115236547 1872 dbSNP
rs956132183 1875 dbSNP
rs1026885493 1877 dbSNP
rs377575878 1881 dbSNP
rs756424098 1882 dbSNP
rs1302155526 1883 dbSNP
rs1451505283 1892 dbSNP
rs1017730261 1898 dbSNP
rs1218242349 1899 dbSNP
rs1455026397 1905 dbSNP
rs1008061149 1907 dbSNP
rs1302777933 1919 dbSNP
rs978751774 1921 dbSNP
rs1451360802 1924 dbSNP
rs1373906742 1934 dbSNP
rs1168603451 1935 dbSNP
rs1295833639 1941 dbSNP
rs554925324 1944 dbSNP
rs767705488 1949 dbSNP
rs537883702 1955 dbSNP
rs566145626 1959 dbSNP
rs1441374684 1961 dbSNP
rs1319411178 1970 dbSNP
rs1455024579 1972 dbSNP
rs1356926426 1976 dbSNP
rs1270246023 1981 dbSNP
rs1355104598 1983 dbSNP
rs552273723 1984 dbSNP
rs150666754 1990 dbSNP
rs1227098756 1991 dbSNP
rs1275599857 1993 dbSNP
rs1172538512 1995 dbSNP
rs1469136773 1997 dbSNP
rs1454641355 1999 dbSNP
rs1022904605 2006 dbSNP
rs1246385709 2009 dbSNP
rs1360663347 2011 dbSNP
rs1448928775 2022 dbSNP
rs1194230438 2023 dbSNP
rs1367954744 2027 dbSNP
rs1012809431 2028 dbSNP
rs1186630807 2030 dbSNP
rs1427650944 2041 dbSNP
rs895665468 2045 dbSNP
rs1158103839 2048 dbSNP
rs1386244986 2050 dbSNP
rs757223616 2053 dbSNP
rs1482440066 2054 dbSNP
rs1279689896 2056 dbSNP
rs566735027 2066 dbSNP
rs181470918 2083 dbSNP
rs892741173 2089 dbSNP
rs1004408390 2095 dbSNP
rs1054432764 2107 dbSNP
rs1353367761 2109 dbSNP
rs1205940482 2113 dbSNP
rs546833498 2115 dbSNP
rs926780952 2120 dbSNP
rs1048099788 2130 dbSNP
rs189477190 2131 dbSNP
rs142885123 2133 dbSNP
rs1258365382 2137 dbSNP
rs561452041 2146 dbSNP
rs1158408541 2154 dbSNP
rs1298273541 2161 dbSNP
rs184673119 2167 dbSNP
rs982468782 2168 dbSNP
rs1401077209 2178 dbSNP
rs899484858 2184 dbSNP
rs530440578 2193 dbSNP
rs199502927 2195 dbSNP
rs202066403 2198 dbSNP
rs564946410 2199 dbSNP
rs763937965 2207 dbSNP
rs752356452 2208 dbSNP
rs1287080022 2227 dbSNP
rs1337836637 2236 dbSNP
rs987656839 2237 dbSNP
rs1376768496 2239 dbSNP
rs1343097493 2262 dbSNP
rs934777549 2264 dbSNP
rs924691043 2266 dbSNP
rs192128983 2269 dbSNP
rs1181275392 2282 dbSNP
rs762849378 2286 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_ControlB_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gaucacccauuucuCCCUCUc 5'
                        |||||| 
Target 5' --------------GGGAGAa 3'
1 - 7
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_ControlB_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control B
Location of target site ENST00000299340.4 | 3UTR | GGGAGAAAAAAAAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
203 hsa-miR-6867-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT078229 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT107799 SLC1A1 solute carrier family 1 member 1 2 2
MIRT115808 CAPN15 calpain 15 2 2
MIRT137570 RCOR1 REST corepressor 1 2 2
MIRT161372 MBNL1 muscleblind like splicing regulator 1 2 2
MIRT320477 HOXA10 homeobox A10 2 2
MIRT444449 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT461305 MRPS27 mitochondrial ribosomal protein S27 2 6
MIRT470306 PPP6R1 protein phosphatase 6 regulatory subunit 1 2 2
MIRT471679 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT475546 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 2
MIRT480901 BCL2L2-PABPN1 BCL2L2-PABPN1 readthrough 2 2
MIRT489368 RAB11B RAB11B, member RAS oncogene family 2 2
MIRT489557 PLD6 phospholipase D family member 6 2 2
MIRT494969 TMEM233 transmembrane protein 233 2 2
MIRT496634 SLC46A1 solute carrier family 46 member 1 2 2
MIRT500259 ZNF788 zinc finger family member 788 2 6
MIRT500272 ZNF781 zinc finger protein 781 2 8
MIRT500328 ZNF487P zinc finger protein 487 1 3
MIRT504012 ACSL6 acyl-CoA synthetase long chain family member 6 2 2
MIRT504830 EREG epiregulin 2 2
MIRT513588 DCTN6 dynactin subunit 6 2 2
MIRT520896 STMN1 stathmin 1 2 2
MIRT525275 C18orf32 chromosome 18 open reading frame 32 2 2
MIRT526166 ANKRD65 ankyrin repeat domain 65 2 2
MIRT526582 CCDC43 coiled-coil domain containing 43 2 2
MIRT527812 TMEM74B transmembrane protein 74B 2 2
MIRT528141 LRRC38 leucine rich repeat containing 38 2 2
MIRT529903 C1orf64 steroid receptor associated and regulated protein 2 4
MIRT531980 SLCO1B3 solute carrier organic anion transporter family member 1B3 2 2
MIRT532251 TBPL2 TATA-box binding protein like 2 2 2
MIRT534300 SKIDA1 SKI/DACH domain containing 1 2 2
MIRT534879 QKI QKI, KH domain containing RNA binding 2 2
MIRT538305 CSNK2A1 casein kinase 2 alpha 1 2 2
MIRT539385 ADRB1 adrenoceptor beta 1 2 2
MIRT541304 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT543960 RNF20 ring finger protein 20 2 2
MIRT544380 ZNF266 zinc finger protein 266 2 2
MIRT544451 KRBOX4 KRAB box domain containing 4 2 2
MIRT545783 ZNF791 zinc finger protein 791 2 4
MIRT548156 FRAT2 FRAT2, WNT signaling pathway regulator 2 2
MIRT556660 KMT2D lysine methyltransferase 2D 2 4
MIRT557715 GABARAPL1 GABA type A receptor associated protein like 1 2 2
MIRT562701 ZNF415 zinc finger protein 415 2 2
MIRT563050 ZNF138 zinc finger protein 138 2 2
MIRT564307 CCNT1 cyclin T1 2 2
MIRT568333 BACH1 BTB domain and CNC homolog 1 2 2
MIRT570864 ZNF525 zinc finger protein 525 2 2
MIRT570874 ZFP1 ZFP1 zinc finger protein 2 2
MIRT571516 ZNF625 zinc finger protein 625 2 2
MIRT572470 MTMR10 myotubularin related protein 10 2 2
MIRT572898 RUNDC3B RUN domain containing 3B 2 2
MIRT573084 APLN apelin 2 2
MIRT575251 Timp3 tissue inhibitor of metalloproteinase 3 2 2
MIRT575275 Mapk8ip2 mitogen-activated protein kinase 8 interacting protein 2 2 2
MIRT607230 LINS lines homolog 1 2 4
MIRT611803 FCRL4 Fc receptor like 4 2 2
MIRT612669 POU2F1 POU class 2 homeobox 1 2 4
MIRT612739 MYOCD myocardin 2 2
MIRT613409 CDH8 cadherin 8 2 4
MIRT614007 PAOX polyamine oxidase 2 2
MIRT615188 CLUAP1 clusterin associated protein 1 2 2
MIRT616497 ATP6AP1L ATPase H+ transporting accessory protein 1 like 2 2
MIRT616524 URM1 ubiquitin related modifier 1 2 2
MIRT617066 SPIB Spi-B transcription factor 2 2
MIRT617813 EMX2 empty spiracles homeobox 2 2 2
MIRT619291 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT619375 KLHL12 kelch like family member 12 2 2
MIRT619499 TXLNB taxilin beta 2 2
MIRT619601 MKKS McKusick-Kaufman syndrome 2 2
MIRT619754 MYO1F myosin IF 2 2
MIRT619976 ZSCAN22 zinc finger and SCAN domain containing 22 2 2
MIRT620743 CCR5 C-C motif chemokine receptor 5 (gene/pseudogene) 2 2
MIRT620871 KCTD7 potassium channel tetramerization domain containing 7 2 2
MIRT621380 CLNK cytokine dependent hematopoietic cell linker 2 2
MIRT621511 ZNF638 zinc finger protein 638 2 2
MIRT621537 ZNF500 zinc finger protein 500 2 2
MIRT621772 TMEM87B transmembrane protein 87B 2 2
MIRT622193 SLC5A12 solute carrier family 5 member 12 2 2
MIRT622319 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT622738 PITPNM3 PITPNM family member 3 2 2
MIRT622996 ONECUT3 one cut homeobox 3 2 2
MIRT625301 SHISA6 shisa family member 6 2 2
MIRT625637 KCNQ3 potassium voltage-gated channel subfamily Q member 3 2 2
MIRT627698 RFFL ring finger and FYVE like domain containing E3 ubiquitin protein ligase 2 2
MIRT627751 RAD51L3-RFFL RAD51L3-RFFL readthrough 2 2
MIRT628438 ANTXR2 anthrax toxin receptor 2 2 2
MIRT635440 SLC25A44 solute carrier family 25 member 44 2 2
MIRT637166 TMEM50A transmembrane protein 50A 2 2
MIRT638207 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT639288 TFAP2A transcription factor AP-2 alpha 2 4
MIRT639398 NEURL1B neuralized E3 ubiquitin protein ligase 1B 2 2
MIRT641230 SEMA3E semaphorin 3E 2 2
MIRT641501 STC2 stanniocalcin 2 2 2
MIRT642577 PSTPIP1 proline-serine-threonine phosphatase interacting protein 1 2 2
MIRT642735 TDRD6 tudor domain containing 6 2 2
MIRT644001 PPP1R3G protein phosphatase 1 regulatory subunit 3G 2 2
MIRT644210 CBS cystathionine-beta-synthase 2 2
MIRT645405 FAM110A family with sequence similarity 110 member A 2 2
MIRT645685 TBC1D13 TBC1 domain family member 13 2 2
MIRT645699 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT645761 SURF6 surfeit 6 2 2
MIRT645826 INADL PATJ, crumbs cell polarity complex component 2 2
MIRT645914 PLXNA3 plexin A3 2 2
MIRT646167 PTPN14 protein tyrosine phosphatase, non-receptor type 14 2 2
MIRT646634 COA4 cytochrome c oxidase assembly factor 4 homolog 2 2
MIRT647547 CYP2B6 cytochrome P450 family 2 subfamily B member 6 2 2
MIRT648262 ZNF582 zinc finger protein 582 2 2
MIRT648385 ZNF22 zinc finger protein 22 2 2
MIRT648629 LEMD2 LEM domain containing 2 2 2
MIRT649353 SLC27A2 solute carrier family 27 member 2 2 2
MIRT649395 SH2D4A SH2 domain containing 4A 2 2
MIRT650241 CD68 CD68 molecule 2 2
MIRT650379 PTGIS prostaglandin I2 synthase 2 2
MIRT650705 KRT32 keratin 32 2 2
MIRT650854 UNC13D unc-13 homolog D 2 2
MIRT651042 ZNF644 zinc finger protein 644 2 2
MIRT651102 ZNF48 zinc finger protein 48 2 2
MIRT651130 ZNF398 zinc finger protein 398 2 2
MIRT652089 TSKU tsukushi, small leucine rich proteoglycan 2 2
MIRT652200 TRIM33 tripartite motif containing 33 2 2
MIRT652422 TMEM239 transmembrane protein 239 2 2
MIRT652755 TET3 tet methylcytosine dioxygenase 3 2 2
MIRT653201 SP9 Sp9 transcription factor 2 2
MIRT653338 SMG7 SMG7, nonsense mediated mRNA decay factor 2 2
MIRT653715 SLC25A32 solute carrier family 25 member 32 2 2
MIRT654456 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT654499 RABIF RAB interacting factor 2 2
MIRT654678 PSMB5 proteasome subunit beta 5 2 2
MIRT655162 PHF20L1 PHD finger protein 20 like 1 2 2
MIRT655540 PADI2 peptidyl arginine deiminase 2 2 4
MIRT655850 NFE2L1 nuclear factor, erythroid 2 like 1 2 2
MIRT656248 MEX3A mex-3 RNA binding family member A 2 2
MIRT656581 LSAMP limbic system-associated membrane protein 2 2
MIRT657597 GRID1 glutamate ionotropic receptor delta type subunit 1 2 2
MIRT657824 GJD3 gap junction protein delta 3 2 2
MIRT658466 FAM102B family with sequence similarity 102 member B 2 2
MIRT659083 DENR density regulated re-initiation and release factor 2 2
MIRT659196 CYBB cytochrome b-245 beta chain 2 2
MIRT659558 CGGBP1 CGG triplet repeat binding protein 1 2 2
MIRT659860 CAPRIN1 cell cycle associated protein 1 2 2
MIRT660172 BNC2 basonuclin 2 2 2
MIRT660626 ANKRD52 ankyrin repeat domain 52 2 2
MIRT660917 ADAM19 ADAM metallopeptidase domain 19 2 2
MIRT660979 ABHD2 abhydrolase domain containing 2 2 2
MIRT661564 EPHX2 epoxide hydrolase 2 2 2
MIRT662214 CCRL2 C-C motif chemokine receptor like 2 2 2
MIRT662246 C15orf52 chromosome 15 open reading frame 52 2 2
MIRT662560 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT662591 MAGEB4 MAGE family member B4 2 2
MIRT663294 TECPR2 tectonin beta-propeller repeat containing 2 2 2
MIRT663437 FBXO2 F-box protein 2 2 2
MIRT663811 RNF128 ring finger protein 128, E3 ubiquitin protein ligase 2 2
MIRT663821 NLRP12 NLR family pyrin domain containing 12 2 2
MIRT665959 SZRD1 SUZ RNA binding domain containing 1 2 2
MIRT666115 SRRM4 serine/arginine repetitive matrix 4 2 2
MIRT667448 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT669330 BSND barttin CLCNK type accessory beta subunit 2 2
MIRT669409 ATP9A ATPase phospholipid transporting 9A (putative) 2 2
MIRT669641 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
MIRT672663 GTF2H5 general transcription factor IIH subunit 5 2 2
MIRT673266 RUNDC1 RUN domain containing 1 2 2
MIRT676995 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT679290 SSBP2 single stranded DNA binding protein 2 2 2
MIRT687508 NCKAP1 NCK associated protein 1 2 2
MIRT698932 SPATA2 spermatogenesis associated 2 2 2
MIRT700852 PERP PERP, TP53 apoptosis effector 2 2
MIRT702426 KIAA1958 KIAA1958 2 2
MIRT703939 EPB41L1 erythrocyte membrane protein band 4.1 like 1 2 2
MIRT708962 SLC12A3 solute carrier family 12 member 3 2 2
MIRT709742 UBD ubiquitin D 2 2
MIRT709946 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT711121 CYYR1 cysteine and tyrosine rich 1 2 2
MIRT711217 RETSAT retinol saturase 2 2
MIRT711576 ASPA aspartoacylase 2 2
MIRT711599 LHX5 LIM homeobox 5 2 2
MIRT712232 RCC2 regulator of chromosome condensation 2 2 2
MIRT713317 TMEM44 transmembrane protein 44 2 2
MIRT713510 PAFAH2 platelet activating factor acetylhydrolase 2 2 2
MIRT713543 GJB1 gap junction protein beta 1 2 2
MIRT713621 MED8 mediator complex subunit 8 2 2
MIRT714988 TSPAN11 tetraspanin 11 2 2
MIRT715449 PTCD1 pentatricopeptide repeat domain 1 2 2
MIRT715575 ATP5J2-PTCD1 ATP5J2-PTCD1 readthrough 2 2
MIRT715771 DDX42 DEAD-box helicase 42 2 2
MIRT715887 GNG2 G protein subunit gamma 2 2 2
MIRT716091 HARS histidyl-tRNA synthetase 2 2
MIRT717403 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT717965 PXMP4 peroxisomal membrane protein 4 2 2
MIRT718324 METTL7A methyltransferase like 7A 2 2
MIRT718628 DIP2A disco interacting protein 2 homolog A 2 2
MIRT719213 CAMK4 calcium/calmodulin dependent protein kinase IV 2 2
MIRT719234 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719817 LRRC4 leucine rich repeat containing 4 2 2
MIRT719978 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT720480 TMEM178B transmembrane protein 178B 2 2
MIRT720713 RAPGEF6 Rap guanine nucleotide exchange factor 6 2 2
MIRT721006 ZNF619 zinc finger protein 619 2 2
MIRT721741 SDK2 sidekick cell adhesion molecule 2 2 2
MIRT723547 ZDHHC22 zinc finger DHHC-type containing 22 2 2
MIRT723596 FKRP fukutin related protein 2 2
MIRT723746 AIFM2 apoptosis inducing factor, mitochondria associated 2 2 2
MIRT724784 C1D C1D nuclear receptor corepressor 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6867-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)

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