pre-miRNA Information
pre-miRNA hsa-mir-758   
Genomic Coordinates chr14: 101026020 - 101026107
Synonyms MIRN758, hsa-mir-758, MIR758
Description Homo sapiens miR-758 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-758-5p
Sequence 15| GAUGGUUGACCAGAGAGCACAC |36
Evidence Experimental
Experiments SOLiD
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 16 14 + 101026049 29233923 MiREDiBase
A-to-I 21 14 + 101026054 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs372417522 1 dbSNP
rs748092616 2 dbSNP
rs1270901332 4 dbSNP
rs1364206491 5 dbSNP
rs1483583954 8 dbSNP
rs770931807 10 dbSNP
rs776760808 11 dbSNP
rs1360350664 12 dbSNP
rs759742151 13 dbSNP
rs1002938972 15 dbSNP
rs770107042 17 dbSNP
rs369242818 20 dbSNP
rs1217090272 21 dbSNP
rs763341052 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol FAM20B   
Synonyms gxk1
Description FAM20B, glycosaminoglycan xylosylkinase
Transcript NM_014864   
Expression
Putative miRNA Targets on FAM20B
3'UTR of FAM20B
(miRNA target sites are highlighted)
>FAM20B|NM_014864|3'UTR
   1 TTCTCGACACAAAATAAGTGAAACTTCTTTTTACAAAGATAGAGAAACAGCACAATCAATTCCAAATGGTATGAGATGGA
  81 TTGGAAGTGGCCAGCAGCAAGTTCTGGTGACGGGACAGAGTGGCCTTGGATGTCTTTGGTATTTTCTGTAGTAGAAACTA
 161 AAGCAAAGACCACAAGTTTCAGAGCATGGAGACATTCCTGCTGAATCGCCTTCTCACCTCCTCGGCAATTGCTCATTCTA
 241 GGGTTGGGCATCATAGTTGGTCAGTCTTAATTCCCATGCCAAAGGACAAACAGGTGTGACATTTGGATAGATGAATACTG
 321 GGATTGGCTCTGGAGCATGTGTTTTGAGTTGAACCTTGCAGTCCTTTCTCTACGCCCGTGGATTTTGTGGAAACACTTTG
 401 CAATCTCTTTGTCTTTTTTTTTTTTACCAGAACTAGTTACATTGGAATGCTTACTGTCCTACAGAGTGGCAGCAAATAAA
 481 ACCTTGCATTCCATCAAGCCAAAATAGCACACTCTGTTAGAGGAGATACATGTTTAAGATAGAATTGGAGGGAAGGACAA
 561 AAACAGAAAAATGTTTGGGCTTTTAAGCCATTGGGTAGTATTGTTTTGATGATCTTAGAGGAGGGAAGAAGAGAGAGAGA
 641 CCCAATGGTAGAACCAGAATCAGGGAGATGACTGAACTACTGAAAAACAGGTTCCCTTGTATTTAGGATCTTAAGGTGTA
 721 TAAAAAGCAAACATGACTTTGCACCTAAGTAAATTCTGCATTCTCATAGTTGTGTCCCAATTAACCAAAAAGTTGTCTCT
 801 AGAGAAAATACTATTACAATCTAAGCATGATTCTCTGTGGAGACTAATTTTTTCCCCTTTTGCCAAAAGCAGTCCTTCCC
 881 AAATTAACAAAGCAAACTGAAATAATACCTTGAATAACAGGTTGCCTGTGGTCTCTGTCATCCTCGTTTCTCTTCTGAAA
 961 TGAATTTCCACCTCTGCCTTTAAGGCATTTTTGTCACTGAAGCTGCTGTTCCCAAGAGATCGGCAACCTTTTTGTCCCTT
1041 TCTCATAAGAAAGGGACACTCCTACAGGTGAGAGTGTATACCTTACTCTCTCAGATAAGTGGCTGGACTTATCTTGTGAT
1121 TTGGGGCCATGGAAGATTGGAAACAAAGATTTTAAGCCTTCTTCTTTTTTTCTTTTTTCTTTTTTTTTTGAGACCAAGTC
1201 TCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCACGATCTTGGCTTACTGCAACCTCCGTCTCCCAGGTTCAAGCGATTCT
1281 CTTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCGCCCGCCATCGTGCCCAGCTAATTTTTATATTTTTAGTGGAGAC
1361 AGGGTTTCGGGTTTCACCATGTTGGCCAGGTTGATCTTGGACTCCTGACCCCAGGTGATCCACCTGCCTCAGCCTTCCAA
1441 AGTGCTGGGATTACAGGCATGAGCCACCGTGGCCGGCCAAGATTTTAAGCCTTCTGAGCCTTGAAATTGAGGAGGTTAAA
1521 AGGAAGAGCCTTAAGATTTTGATTTATGTCAAATCCTAATTCTATCATTCAGTCTTGTTTGGAGTTCTGAACCCATGATG
1601 TTGTATTATGCTTCTTTCTCCTCTTAGCACTCTCAAATTTCAGGTTTGTAAAACACAGTTTTTGTTTTGTGTTCTGGCAA
1681 AGTGATCTCAACATGTAAGTAGTTGCAGTAAAACACAGGGGCAAAGGAAGACAGGCCTGATGTGCCCACTCATCTATGGA
1761 CTCAGAGCTGTGTGCTTTGCTCCTGCATCTTGTTGAGGTGCTGTTCCAGCTTTGCATTTCTGTCAAGTAGAGGCGAATAT
1841 ATAAACAGTGTGGTTGAATACATTTAATGCCAGCCATTGGAAACTAGTTTTAGGCAACCACTCTCAAAAACAGCTTTAGA
1921 ATTTATGCCCAGTTTTCTTGCATTGAAAGATAACTGAGTAATAACCTGTAACTATTTTTAAATGGCATGAAATTAGGAAA
2001 CTTTTGTACATTTTATATACATTTTGAGATGAACAGAACAATGGGCTGAGTTATAAAAAGCGTGTATTGAATTTAAGAAG
2081 ACAGACTAGCACAAAACACAGAATTCGTGTTAACCAAAGGAGGCATTGATTTCAGTTTTAAGGCTACTCAGTGTTGTGTG
2161 TCCAGGGAAATTCACAGCTCAGTATGAGAATACCTTGGTTAGTGCTCACCCACAAGCTTCCAGGAGCCAGCTGGGAGGAG
2241 ACAATAGGAAGAGATGTCATCTCTGCTCTCCCTGTAAATGTTAGTTGAACTAAGTTATGGATTTGTGGTCTTTCAAATAC
2321 ATGACGCCTTTAGTATGCCACACTGAAATGAATAAGAAGTCTTCTGAAACTGGGAACTTCATAACATTGAAGGCAGAAGA
2401 TTCTGCTAAGGAAAAAAGCAGGCAGGAAAGAAAATGTCTCATCCTTTCTTGAAAGCATTTGCAGAAAATATATCATTTCA
2481 TTTTATTCCCATCTGTTTTCAAACTCGTGATCTTAAAAGGCATTCTGATGATAAATTTAGAATTTTCATCTATAAAATTT
2561 AGAACTCTAATCCATAAAGTTAGAATTGAGCTAATAGAGTGGTATGACATGGCACTAAAAATATAAATTTTTGTTGTAAG
2641 TCAGGATTGGAGTAAGCTGGAAAAGTATGTTTAGGCAAATCTTGGAGAAAACCAACCATAAACTTACAGCTCTAAAATTC
2721 AGAAAGCCCTAAAATTTCAAACACTGTTTGAAAGAAGAGGTGGGGGCCGGGTGCCGTGGCTCATGCCTGTCATCCCAGCA
2801 TTTGGGAGGCTGAGGCAGGCAGATCACCTGAGGCCAGGAGTTCGAGACCAGCCTGGCTGGCTAGCATGGTGAGACCGTCT
2881 CTACTAAAAATGCAAAAATTAACAGGGCACGGTGGCATGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA
2961 TCACTTGAATCCAGGAGGCGAAGGTTGCAGTGAGCTGAGATTGTGCTGCTGCACTCCAGCCTGGGAGACAGAGCGAGACT
3041 CTGTCTTAAAAAAAAAAAAAGGAGGTGAATTTTTTTTTAAGTTTTGTAACACTGTCCTACTTTATTTATTAGAATCTAAG
3121 GCTGTTACAATCAAGTCGTTGCAGGGTTTGGATCAGCTGTAAGTTAGGTATGCCTACCAAACATCCAAAGGTAGACGTGG
3201 AGACATTTTAATACTACAAAACTAGGAAAATCAGAACTCATGGCCATTTCCTGCCCTCCTCCAACTTGTTAAAACATGTT
3281 TATTCTAAAGTTCGAATGGATAAATTTGAGTATAAAGGTTTTGTTATAAAACTGTTCTTTAGTGTAAGGCTGCATTGTGG
3361 GTTTGGGGGAAATGTAAATAATTTTCTGTGTAAAACAAATTCATAGGATCTGATTTGCTCAGAGTATTATTCAAGAATGT
3441 ATTAATAAGGCATTGCCCCCTGTTTGCACTCAGGGTTAATATGTCAAATGAAATTTAAGAAGGAAATGGAAGAATTCAGG
3521 TACATTAATTGCATATTATTTTGGGAAAGATGAGTCCTATACGTGGCAATTTTTCAATGTCATCTGAAGCCAGCATTATC
3601 TTCCAAAGAAATCGATCTTTTTTTTCTAAAAAAAAAAAATGCTTTTGCCTTCCCTTCCCTTCCCATCCGCCATATTTCTT
3681 CAGCCTTTCTTCTCGATCACCCGTGTATTCTTTGACCAGTAAATGACCACACCTCAATGATGGTAAAACAGCATCATCAG
3761 TAAGCTATCTTATATGCCTCATCCTGTGAGTTTGAGCTTCAGGAAACATGAGTAAAAGTATATGTAATGTATATAGTCGT
3841 ATATGTATTCTAGCAAGAAAAACATATTTATTTTGACAAAGGGGAACACTGACTTTCTGAAGGATTCAGAAAGAACCTTA
3921 GTGAAAGGTTCTCAGTCTCTGAGAGTGGACCCTAATTAACATAAAGACCATTCATCAGCGAATAACTACTGAGCAACTCT
4001 AGTGTGCCAGCACAGGCCAGACATACTAGTGAGCCAGGCACATCTGGCCTTGGGAAACTCATCCTACAGGGGAAGGCCAG
4081 TTTTTTTCCCTTCAATTCCTCAAGTCTGGGTGGTGACAAGGTAGGGGCTAGGTACTGGACTACCACAGGTTTTTAGGAAC
4161 TAAGGTGTTTCTCATAAACACAAAATGTTGGGTGAAACTGGGAACAACTACTCAGAAGCTCATTTATTTGCTTAAATGGA
4241 AAGTGTGGGAGCCACTACCCTCTCTTTTGATCTGCCAAGGATTTCCTCTCAGAGCTGTTGCACAGACAGAGATTGTACTT
4321 GGTAAGATACCAAACAAGACAGATATGGATCTAAATTTCTAATGTGTTCTATGGGTTTCAATTCTGAAAAAAGAAAATGA
4401 ATAAAGATTTTAATAAATATTGAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cacacgAGAGACC------AGUUGGUAg 5'
                ||| |||       ||||||| 
Target 5' ggcaaaTCT-TGGAGAAAACCAACCATa 3'
2674 - 2700 141.00 -9.90
2
miRNA  3' cacacgaGAGACCAGUUGGUag 5'
                 :|:| | ||||||  
Target 5' aaactagTTTTAGGCAACCAct 3'
1881 - 1902 131.00 -10.90
3
miRNA  3' cacacgAGAGACCAGUUGGUAg 5'
                |:|   | ||:|||| 
Target 5' aatacaTTTAATGCCAGCCATt 3'
1857 - 1878 128.00 -7.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN163352 4 COSMIC
COSN30102353 6 COSMIC
COSN31560272 68 COSMIC
COSN28674535 120 COSMIC
COSN20095616 426 COSMIC
COSN4604105 581 COSMIC
COSN7186804 646 COSMIC
COSN20819118 910 COSMIC
COSN20095620 1165 COSMIC
COSN6430765 1172 COSMIC
COSN21156700 1347 COSMIC
COSN22780919 1481 COSMIC
COSN19075853 1517 COSMIC
COSN31589237 1928 COSMIC
COSN7466842 1947 COSMIC
COSN26584902 1986 COSMIC
COSN22844898 2005 COSMIC
COSN20095621 2060 COSMIC
COSN31488849 2070 COSMIC
COSN26550572 2124 COSMIC
COSN28664213 2261 COSMIC
COSN9367346 2523 COSMIC
COSN1093296 2537 COSMIC
COSN8323247 2581 COSMIC
COSN20095622 2628 COSMIC
COSN15575722 2676 COSMIC
COSN9367347 2677 COSMIC
COSN31546358 3304 COSMIC
COSN30160482 3318 COSMIC
COSN22407832 3341 COSMIC
COSN31607817 3436 COSMIC
COSN31593347 3564 COSMIC
COSN20095623 3640 COSMIC
COSN32056501 3762 COSMIC
COSN17029470 3871 COSMIC
COSN9367348 3926 COSMIC
COSN16093820 4335 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs371360556 6 dbSNP
rs1434406039 7 dbSNP
rs765890211 7 dbSNP
rs374550278 16 dbSNP
rs368769772 21 dbSNP
rs73045635 32 dbSNP
rs780929375 41 dbSNP
rs1489840477 45 dbSNP
rs950622239 47 dbSNP
rs371656285 49 dbSNP
rs1047439622 56 dbSNP
rs1478063025 63 dbSNP
rs1287240782 64 dbSNP
rs1209704577 66 dbSNP
rs1342513670 70 dbSNP
rs1257409275 74 dbSNP
rs1173871611 76 dbSNP
rs1377765509 84 dbSNP
rs774457923 91 dbSNP
rs1433358550 103 dbSNP
rs1006004026 112 dbSNP
rs4456058 113 dbSNP
rs1340888762 119 dbSNP
rs2025584 120 dbSNP
rs1400250482 143 dbSNP
rs776661933 149 dbSNP
rs1335456795 150 dbSNP
rs1423072874 151 dbSNP
rs997410949 160 dbSNP
rs1030268908 161 dbSNP
rs1234024970 173 dbSNP
rs1305765756 185 dbSNP
rs1345850535 187 dbSNP
rs1441077848 187 dbSNP
rs1257774943 189 dbSNP
rs1026467158 208 dbSNP
rs1233405118 209 dbSNP
rs1338142543 213 dbSNP
rs572617595 221 dbSNP
rs950938064 224 dbSNP
rs1220374319 225 dbSNP
rs541217133 226 dbSNP
rs1275272511 229 dbSNP
rs759326474 232 dbSNP
rs978502345 233 dbSNP
rs1032385896 243 dbSNP
rs987605179 244 dbSNP
rs990948011 248 dbSNP
rs1249356286 255 dbSNP
rs916727012 267 dbSNP
rs1399637239 268 dbSNP
rs1329458943 277 dbSNP
rs949572154 278 dbSNP
rs1195145632 283 dbSNP
rs1163211965 297 dbSNP
rs1019442440 311 dbSNP
rs1370602427 312 dbSNP
rs964785090 338 dbSNP
rs918846550 348 dbSNP
rs928946757 361 dbSNP
rs1235989532 368 dbSNP
rs1199906331 369 dbSNP
rs140751029 374 dbSNP
rs150142585 375 dbSNP
rs547523466 378 dbSNP
rs1358168226 379 dbSNP
rs1284635127 390 dbSNP
rs1245778483 399 dbSNP
rs1374215233 401 dbSNP
rs753246545 406 dbSNP
rs1401183805 408 dbSNP
rs1449024260 408 dbSNP
rs1404163735 412 dbSNP
rs941758174 412 dbSNP
rs1038821305 414 dbSNP
rs11299711 414 dbSNP
rs1378054440 414 dbSNP
rs1393306967 414 dbSNP
rs397982091 414 dbSNP
rs947304547 425 dbSNP
rs1180152074 426 dbSNP
rs1245668187 426 dbSNP
rs1439753336 426 dbSNP
rs1166562560 429 dbSNP
rs138582417 431 dbSNP
rs548087327 439 dbSNP
rs775413965 441 dbSNP
rs563261547 443 dbSNP
rs1368797967 445 dbSNP
rs1056927655 446 dbSNP
rs1242634242 455 dbSNP
rs895564047 460 dbSNP
rs1274396453 464 dbSNP
rs999481416 473 dbSNP
rs185893563 474 dbSNP
rs1044061139 475 dbSNP
rs545425891 482 dbSNP
rs898819478 484 dbSNP
rs1324815845 486 dbSNP
rs376534097 502 dbSNP
rs995081796 507 dbSNP
rs370914602 517 dbSNP
rs1359086210 528 dbSNP
rs1026513271 532 dbSNP
rs1012260864 537 dbSNP
rs1023688111 538 dbSNP
rs559022343 539 dbSNP
rs1478728264 546 dbSNP
rs970834741 550 dbSNP
rs528215132 569 dbSNP
rs1487167130 572 dbSNP
rs1250512068 574 dbSNP
rs112020970 576 dbSNP
rs1019077560 586 dbSNP
rs1215113015 594 dbSNP
rs1278188194 595 dbSNP
rs965169577 598 dbSNP
rs1217505075 613 dbSNP
rs1347241803 614 dbSNP
rs1275942611 625 dbSNP
rs1300501498 630 dbSNP
rs1338901760 630 dbSNP
rs759105889 630 dbSNP
rs974800722 646 dbSNP
rs1358147920 649 dbSNP
rs1173559283 652 dbSNP
rs149335876 655 dbSNP
rs1022328565 659 dbSNP
rs1425309699 662 dbSNP
rs1169864485 663 dbSNP
rs34534731 663 dbSNP
rs768188279 669 dbSNP
rs1476833397 675 dbSNP
rs1425706007 678 dbSNP
rs1194027136 683 dbSNP
rs1482820912 686 dbSNP
rs1188704232 689 dbSNP
rs1208339992 691 dbSNP
rs9726948 692 dbSNP
rs550190130 697 dbSNP
rs1430846838 700 dbSNP
rs1168987711 702 dbSNP
rs570354653 703 dbSNP
rs1218552924 719 dbSNP
rs1316533667 722 dbSNP
rs1280655774 723 dbSNP
rs1372813284 734 dbSNP
rs924526136 738 dbSNP
rs1167367006 742 dbSNP
rs1449859684 745 dbSNP
rs1359222841 756 dbSNP
rs908848676 761 dbSNP
rs941719337 765 dbSNP
rs1425630320 769 dbSNP
rs539031321 770 dbSNP
rs1038771162 782 dbSNP
rs1423000596 787 dbSNP
rs756814060 791 dbSNP
rs1411412670 802 dbSNP
rs921684008 807 dbSNP
rs1473932749 808 dbSNP
rs761487992 810 dbSNP
rs116234027 812 dbSNP
rs16853612 814 dbSNP
rs1205893308 815 dbSNP
rs1364211044 831 dbSNP
rs999829899 836 dbSNP
rs1230400462 837 dbSNP
rs1380408133 839 dbSNP
rs1294788645 853 dbSNP
rs1308113882 858 dbSNP
rs948500967 859 dbSNP
rs1443869762 865 dbSNP
rs1044114099 874 dbSNP
rs1340777226 885 dbSNP
rs1347892375 908 dbSNP
rs898872105 912 dbSNP
rs756517205 927 dbSNP
rs1405748339 930 dbSNP
rs1234978450 931 dbSNP
rs1178284292 938 dbSNP
rs1437884394 943 dbSNP
rs1047344700 946 dbSNP
rs1264209737 947 dbSNP
rs1488407157 947 dbSNP
rs9725887 949 dbSNP
rs1360642334 950 dbSNP
rs1208773213 962 dbSNP
rs1023635884 968 dbSNP
rs1307163860 978 dbSNP
rs970783944 988 dbSNP
rs9725888 992 dbSNP
rs1295253938 1006 dbSNP
rs1425008612 1007 dbSNP
rs1359720324 1011 dbSNP
rs1040959526 1012 dbSNP
rs4652352 1022 dbSNP
rs147003645 1023 dbSNP
rs1159835958 1027 dbSNP
rs1475734123 1027 dbSNP
rs568228605 1032 dbSNP
rs72709441 1038 dbSNP
rs1193472766 1040 dbSNP
rs530546942 1041 dbSNP
rs984752187 1045 dbSNP
rs577118662 1048 dbSNP
rs1346978574 1058 dbSNP
rs1451727703 1061 dbSNP
rs35222556 1061 dbSNP
rs879277214 1062 dbSNP
rs1355338501 1063 dbSNP
rs1376054620 1064 dbSNP
rs974405036 1071 dbSNP
rs1231845518 1077 dbSNP
rs1416365815 1085 dbSNP
rs921635177 1090 dbSNP
rs933041605 1096 dbSNP
rs968085296 1101 dbSNP
rs999534201 1103 dbSNP
rs1339578886 1107 dbSNP
rs1296052427 1109 dbSNP
rs1401621347 1110 dbSNP
rs1387363857 1113 dbSNP
rs1030971747 1126 dbSNP
rs1289687931 1133 dbSNP
rs1465585691 1145 dbSNP
rs1376033019 1153 dbSNP
rs140817019 1158 dbSNP
rs772198073 1158 dbSNP
rs551234316 1160 dbSNP
rs571152518 1161 dbSNP
rs1489495831 1162 dbSNP
rs956167927 1164 dbSNP
rs1261937649 1165 dbSNP
rs1199571499 1166 dbSNP
rs138326350 1167 dbSNP
rs1257316765 1170 dbSNP
rs4652353 1172 dbSNP
rs1276261202 1173 dbSNP
rs1317151389 1173 dbSNP
rs1220186890 1175 dbSNP
rs1260630192 1179 dbSNP
rs1383702318 1180 dbSNP
rs1395731512 1180 dbSNP
rs34488634 1182 dbSNP
rs1338719170 1184 dbSNP
rs979862799 1186 dbSNP
rs1255790834 1191 dbSNP
rs1169197436 1197 dbSNP
rs1475093428 1201 dbSNP
rs920349891 1214 dbSNP
rs1476581701 1227 dbSNP
rs1374034490 1228 dbSNP
rs1186399430 1229 dbSNP
rs930363380 1235 dbSNP
rs1410521972 1236 dbSNP
rs1417384077 1241 dbSNP
rs1203702740 1242 dbSNP
rs1045036395 1244 dbSNP
rs4652354 1246 dbSNP
rs748037496 1250 dbSNP
rs1339822461 1253 dbSNP
rs1395575134 1254 dbSNP
rs1436459147 1257 dbSNP
rs1003560773 1258 dbSNP
rs550396338 1259 dbSNP
rs1442746249 1261 dbSNP
rs527823918 1264 dbSNP
rs944978430 1267 dbSNP
rs1376321967 1270 dbSNP
rs1222677427 1271 dbSNP
rs1040616440 1272 dbSNP
rs368533949 1275 dbSNP
rs1397643432 1276 dbSNP
rs1349449410 1280 dbSNP
rs1162965533 1282 dbSNP
rs1456739149 1286 dbSNP
rs1386650665 1289 dbSNP
rs1183869406 1300 dbSNP
rs1005722644 1305 dbSNP
rs996348557 1317 dbSNP
rs1235897641 1318 dbSNP
rs1017560972 1321 dbSNP
rs532864274 1322 dbSNP
rs975694297 1325 dbSNP
rs552558914 1327 dbSNP
rs999586507 1328 dbSNP
rs1247047082 1335 dbSNP
rs1205732229 1336 dbSNP
rs1234793771 1339 dbSNP
rs566101668 1341 dbSNP
rs1479801886 1347 dbSNP
rs1031441704 1361 dbSNP
rs954376986 1361 dbSNP
rs182478617 1369 dbSNP
rs923721085 1380 dbSNP
rs1367894119 1397 dbSNP
rs935119645 1416 dbSNP
rs1171683080 1419 dbSNP
rs1014619353 1424 dbSNP
rs777371123 1428 dbSNP
rs1470227611 1431 dbSNP
rs1246008459 1434 dbSNP
rs1196731391 1440 dbSNP
rs554751402 1441 dbSNP
rs1490771643 1443 dbSNP
rs566872185 1449 dbSNP
rs774084618 1461 dbSNP
rs947955039 1463 dbSNP
rs1172323682 1468 dbSNP
rs1044980365 1469 dbSNP
rs372635050 1469 dbSNP
rs147233588 1470 dbSNP
rs1047552246 1475 dbSNP
rs767064137 1476 dbSNP
rs951817972 1477 dbSNP
rs1347762284 1490 dbSNP
rs1440966017 1491 dbSNP
rs1399784037 1494 dbSNP
rs1326186298 1509 dbSNP
rs1358192819 1510 dbSNP
rs749885766 1528 dbSNP
rs1400761665 1546 dbSNP
rs907562464 1547 dbSNP
rs1170741255 1549 dbSNP
rs1301861718 1556 dbSNP
rs533384881 1565 dbSNP
rs1043921947 1566 dbSNP
rs900023237 1568 dbSNP
rs922186350 1569 dbSNP
rs997076406 1577 dbSNP
rs1029932207 1586 dbSNP
rs1306146449 1589 dbSNP
rs1218256612 1599 dbSNP
rs932192068 1600 dbSNP
rs1278076253 1612 dbSNP
rs1326192302 1619 dbSNP
rs1043935228 1628 dbSNP
rs904002630 1631 dbSNP
rs1338970986 1632 dbSNP
rs79542318 1634 dbSNP
rs1469870200 1635 dbSNP
rs1191885545 1636 dbSNP
rs1052520950 1637 dbSNP
rs1431103372 1642 dbSNP
rs1358061789 1649 dbSNP
rs896515457 1651 dbSNP
rs1331563141 1653 dbSNP
rs1031122729 1654 dbSNP
rs1252266154 1668 dbSNP
rs1169934583 1669 dbSNP
rs1476698260 1670 dbSNP
rs1013593611 1671 dbSNP
rs1475678333 1677 dbSNP
rs956474107 1679 dbSNP
rs1024025581 1683 dbSNP
rs187113980 1684 dbSNP
rs766852582 1686 dbSNP
rs190192155 1696 dbSNP
rs1417056677 1698 dbSNP
rs56006430 1703 dbSNP
rs1165189979 1706 dbSNP
rs1201807635 1709 dbSNP
rs572488361 1715 dbSNP
rs915053500 1724 dbSNP
rs1396297882 1726 dbSNP
rs9730439 1733 dbSNP
rs1027469765 1739 dbSNP
rs183545778 1740 dbSNP
rs939306027 1743 dbSNP
rs188422347 1746 dbSNP
rs1377910349 1747 dbSNP
rs1282104685 1749 dbSNP
rs983640905 1750 dbSNP
rs1014673165 1752 dbSNP
rs1464051839 1756 dbSNP
rs866294687 1757 dbSNP
rs1170797043 1760 dbSNP
rs1218475902 1762 dbSNP
rs555808400 1769 dbSNP
rs193209299 1773 dbSNP
rs1404581339 1782 dbSNP
rs966151727 1783 dbSNP
rs1182034687 1786 dbSNP
rs1446488272 1804 dbSNP
rs1243897578 1808 dbSNP
rs1178560642 1812 dbSNP
rs975785880 1835 dbSNP
rs921574637 1836 dbSNP
rs1235110618 1840 dbSNP
rs563910351 1846 dbSNP
rs184090991 1847 dbSNP
rs1212095087 1852 dbSNP
rs1047052279 1863 dbSNP
rs1321542770 1871 dbSNP
rs908567536 1885 dbSNP
rs1247797358 1891 dbSNP
rs745411624 1898 dbSNP
rs1359516526 1899 dbSNP
rs186748930 1902 dbSNP
rs1375388339 1906 dbSNP
rs1298700074 1912 dbSNP
rs1435469305 1933 dbSNP
rs1347946435 1942 dbSNP
rs1447670737 1952 dbSNP
rs1426856495 1955 dbSNP
rs979666574 1956 dbSNP
rs1386113103 1964 dbSNP
rs1158058694 1971 dbSNP
rs943644241 1972 dbSNP
rs1417440483 1975 dbSNP
rs925474501 1994 dbSNP
rs935508931 2005 dbSNP
rs1178322302 2011 dbSNP
rs1038877903 2016 dbSNP
rs1267278552 2020 dbSNP
rs1225202809 2021 dbSNP
rs1217778842 2022 dbSNP
rs752978499 2034 dbSNP
rs1284904713 2043 dbSNP
rs1236191612 2045 dbSNP
rs1052991090 2047 dbSNP
rs758537905 2053 dbSNP
rs149724701 2055 dbSNP
rs552920076 2061 dbSNP
rs1307582759 2062 dbSNP
rs560124114 2063 dbSNP
rs569043237 2065 dbSNP
rs1366387435 2071 dbSNP
rs1188449557 2092 dbSNP
rs899970935 2103 dbSNP
rs997024105 2104 dbSNP
rs1473997847 2107 dbSNP
rs776166337 2108 dbSNP
rs949472950 2109 dbSNP
rs1365674518 2134 dbSNP
rs1045092390 2146 dbSNP
rs905185135 2147 dbSNP
rs770405335 2150 dbSNP
rs1201992917 2151 dbSNP
rs148746740 2151 dbSNP
rs1001436607 2153 dbSNP
rs1344001784 2155 dbSNP
rs777977248 2174 dbSNP
rs1294252619 2178 dbSNP
rs891380995 2183 dbSNP
rs1357784276 2198 dbSNP
rs887651168 2199 dbSNP
rs1030654079 2206 dbSNP
rs1321257077 2208 dbSNP
rs1285154238 2209 dbSNP
rs141464805 2211 dbSNP
rs1339653888 2217 dbSNP
rs1295117829 2218 dbSNP
rs1225593131 2219 dbSNP
rs1282036281 2243 dbSNP
rs747026501 2244 dbSNP
rs1015142478 2257 dbSNP
rs3766626 2261 dbSNP
rs35980145 2270 dbSNP
rs3766625 2275 dbSNP
rs1480951058 2280 dbSNP
rs1028690988 2281 dbSNP
rs749197926 2283 dbSNP
rs1190561140 2299 dbSNP
rs979717592 2306 dbSNP
rs925525455 2307 dbSNP
rs1484573177 2309 dbSNP
rs775951319 2326 dbSNP
rs1459609941 2345 dbSNP
rs1264905987 2353 dbSNP
rs1204297304 2356 dbSNP
rs957145482 2362 dbSNP
rs1249340480 2367 dbSNP
rs988342379 2377 dbSNP
rs1156346878 2379 dbSNP
rs570337556 2381 dbSNP
rs960645086 2382 dbSNP
rs1419580080 2395 dbSNP
rs768572025 2400 dbSNP
rs983130646 2401 dbSNP
rs1166450044 2407 dbSNP
rs1463883989 2413 dbSNP
rs1373242886 2417 dbSNP
rs1162593632 2424 dbSNP
rs866560856 2440 dbSNP
rs918056696 2452 dbSNP
rs1377584075 2463 dbSNP
rs1183681343 2464 dbSNP
rs1413396726 2465 dbSNP
rs1333739950 2472 dbSNP
rs1197281006 2480 dbSNP
rs866807970 2494 dbSNP
rs1252076518 2505 dbSNP
rs191552974 2508 dbSNP
rs1241232026 2517 dbSNP
rs1038426264 2518 dbSNP
rs921350629 2521 dbSNP
rs1335648311 2530 dbSNP
rs926661753 2539 dbSNP
rs931311559 2550 dbSNP
rs1393484631 2565 dbSNP
rs1353103607 2567 dbSNP
rs1048343769 2575 dbSNP
rs1162516132 2587 dbSNP
rs1422297653 2592 dbSNP
rs887714370 2598 dbSNP
rs1163621651 2600 dbSNP
rs1005183149 2624 dbSNP
rs137901836 2625 dbSNP
rs1183954162 2641 dbSNP
rs1036221848 2643 dbSNP
rs901659663 2645 dbSNP
rs1219993615 2647 dbSNP
rs761581986 2650 dbSNP
rs1439156096 2651 dbSNP
rs16853619 2661 dbSNP
rs572842929 2669 dbSNP
rs1246745990 2674 dbSNP
rs1236971386 2693 dbSNP
rs953067272 2699 dbSNP
rs1000538881 2704 dbSNP
rs1031984539 2708 dbSNP
rs1021957940 2721 dbSNP
rs1403519822 2730 dbSNP
rs956997579 2730 dbSNP
rs772831107 2732 dbSNP
rs1366996918 2743 dbSNP
rs1303431242 2745 dbSNP
rs1399583498 2745 dbSNP
rs988781857 2747 dbSNP
rs1397496612 2751 dbSNP
rs1433220128 2756 dbSNP
rs369409267 2764 dbSNP
rs971296293 2765 dbSNP
rs980861410 2766 dbSNP
rs1015932066 2768 dbSNP
rs1393310182 2769 dbSNP
rs150890739 2770 dbSNP
rs1376161814 2773 dbSNP
rs1441820503 2776 dbSNP
rs931368572 2777 dbSNP
rs974068631 2783 dbSNP
rs1048400672 2786 dbSNP
rs921300143 2802 dbSNP
rs932710592 2806 dbSNP
rs908518728 2809 dbSNP
rs1341231825 2814 dbSNP
rs940646183 2816 dbSNP
rs986906481 2818 dbSNP
rs760203973 2821 dbSNP
rs1193651609 2822 dbSNP
rs901714840 2836 dbSNP
rs575209667 2837 dbSNP
rs997351269 2847 dbSNP
rs1159487772 2849 dbSNP
rs1174253913 2862 dbSNP
rs765839287 2868 dbSNP
rs912701651 2876 dbSNP
rs1468530861 2878 dbSNP
rs530877317 2884 dbSNP
rs1475167751 2885 dbSNP
rs1255407376 2887 dbSNP
rs1240608452 2892 dbSNP
rs1053334162 2898 dbSNP
rs1198804713 2904 dbSNP
rs1202400493 2905 dbSNP
rs1373937496 2905 dbSNP
rs35292643 2905 dbSNP
rs1326085419 2911 dbSNP
rs893375738 2914 dbSNP
rs1214354990 2915 dbSNP
rs1359380936 2916 dbSNP
rs754351615 2920 dbSNP
rs1168783301 2921 dbSNP
rs116023119 2922 dbSNP
rs997527778 2923 dbSNP
rs888883789 2924 dbSNP
rs1462006602 2926 dbSNP
rs1327964172 2928 dbSNP
rs1169427901 2932 dbSNP
rs1368903913 2934 dbSNP
rs1386092913 2938 dbSNP
rs1000596112 2941 dbSNP
rs904890256 2950 dbSNP
rs1296215636 2955 dbSNP
rs1032036661 2966 dbSNP
rs1225045270 2974 dbSNP
rs1034747603 2978 dbSNP
rs1242673000 2980 dbSNP
rs759979143 2981 dbSNP
rs373067303 2985 dbSNP
rs1335118686 2988 dbSNP
rs1025647111 2995 dbSNP
rs563702407 3003 dbSNP
rs1204210208 3005 dbSNP
rs1306174347 3008 dbSNP
rs577491602 3013 dbSNP
rs1228775199 3014 dbSNP
rs1215207790 3023 dbSNP
rs2018786 3024 dbSNP
rs373660454 3028 dbSNP
rs1383371432 3032 dbSNP
rs1209693802 3035 dbSNP
rs980913846 3036 dbSNP
rs1439710829 3039 dbSNP
rs1356128049 3047 dbSNP
rs1161708062 3048 dbSNP
rs1331115187 3048 dbSNP
rs1446547656 3048 dbSNP
rs549585412 3048 dbSNP
rs1415134377 3052 dbSNP
rs1033784546 3057 dbSNP
rs1479862271 3059 dbSNP
rs1430647481 3060 dbSNP
rs952821617 3060 dbSNP
rs1289165822 3061 dbSNP
rs1192011209 3066 dbSNP
rs886550402 3067 dbSNP
rs984155923 3069 dbSNP
rs1321835496 3070 dbSNP
rs1167394109 3080 dbSNP
rs1348136927 3081 dbSNP
rs1457528880 3082 dbSNP
rs1289363218 3087 dbSNP
rs1306194745 3092 dbSNP
rs962940766 3101 dbSNP
rs146640188 3103 dbSNP
rs1288674385 3111 dbSNP
rs1297307953 3114 dbSNP
rs1365138967 3122 dbSNP
rs1355877643 3129 dbSNP
rs940011670 3131 dbSNP
rs1291062945 3133 dbSNP
rs976739380 3135 dbSNP
rs1239205157 3138 dbSNP
rs923186348 3147 dbSNP
rs753000692 3153 dbSNP
rs1261801195 3159 dbSNP
rs1487158587 3160 dbSNP
rs1410811165 3162 dbSNP
rs1215118256 3167 dbSNP
rs1183279508 3169 dbSNP
rs933193623 3169 dbSNP
rs184073437 3177 dbSNP
rs888936170 3183 dbSNP
rs758688616 3184 dbSNP
rs1224335292 3187 dbSNP
rs1190331492 3189 dbSNP
rs1411969884 3197 dbSNP
rs986849081 3198 dbSNP
rs1268719070 3204 dbSNP
rs912640544 3208 dbSNP
rs1053939636 3215 dbSNP
rs989376586 3216 dbSNP
rs1159977651 3217 dbSNP
rs1365635674 3223 dbSNP
rs892170718 3224 dbSNP
rs1388805653 3227 dbSNP
rs1297519358 3251 dbSNP
rs1368594831 3253 dbSNP
rs548239940 3257 dbSNP
rs1451746018 3262 dbSNP
rs777834400 3278 dbSNP
rs1347438643 3288 dbSNP
rs78609757 3294 dbSNP
rs1427707061 3297 dbSNP
rs1416456741 3300 dbSNP
rs1202056913 3308 dbSNP
rs947619917 3313 dbSNP
rs879538131 3315 dbSNP
rs1184207157 3316 dbSNP
rs1486590554 3334 dbSNP
rs904836491 3335 dbSNP
rs530884379 3338 dbSNP
rs751782042 3350 dbSNP
rs906811942 3353 dbSNP
rs757443157 3357 dbSNP
rs1321135838 3359 dbSNP
rs1033836769 3362 dbSNP
rs1233715982 3370 dbSNP
rs766396439 3370 dbSNP
rs752692126 3383 dbSNP
rs984208119 3387 dbSNP
rs1295182469 3389 dbSNP
rs551034239 3390 dbSNP
rs570647623 3393 dbSNP
rs767197590 3393 dbSNP
rs747875960 3397 dbSNP
rs1006465448 3403 dbSNP
rs1213529284 3407 dbSNP
rs539241007 3418 dbSNP
rs977169593 3420 dbSNP
rs115052587 3421 dbSNP
rs76363748 3427 dbSNP
rs1372121440 3433 dbSNP
rs1167932148 3434 dbSNP
rs1429772171 3435 dbSNP
rs535750320 3439 dbSNP
rs1182461447 3442 dbSNP
rs16853621 3445 dbSNP
rs1244931344 3456 dbSNP
rs1437909228 3461 dbSNP
rs1200794108 3470 dbSNP
rs1157968192 3476 dbSNP
rs1395672824 3483 dbSNP
rs1250962995 3491 dbSNP
rs1225591642 3505 dbSNP
rs1344596148 3514 dbSNP
rs1436327288 3521 dbSNP
rs1173739467 3524 dbSNP
rs80245804 3525 dbSNP
rs1028251154 3526 dbSNP
rs953987684 3532 dbSNP
rs1396312917 3534 dbSNP
rs936487504 3540 dbSNP
rs1296082131 3543 dbSNP
rs1008228439 3546 dbSNP
rs1053588355 3560 dbSNP
rs1390411536 3563 dbSNP
rs892218750 3569 dbSNP
rs1299534059 3571 dbSNP
rs945118310 3578 dbSNP
rs1370082534 3581 dbSNP
rs956304518 3582 dbSNP
rs1374014493 3605 dbSNP
rs1437014162 3613 dbSNP
rs988933368 3614 dbSNP
rs1484131599 3615 dbSNP
rs914699582 3615 dbSNP
rs968868426 3618 dbSNP
rs980291257 3618 dbSNP
rs1357434706 3623 dbSNP
rs1046510823 3626 dbSNP
rs762428625 3628 dbSNP
rs927554336 3628 dbSNP
rs906195825 3629 dbSNP
rs537471196 3630 dbSNP
rs557869449 3636 dbSNP
rs768698691 3641 dbSNP
rs1276885362 3642 dbSNP
rs1311985326 3643 dbSNP
rs1422205980 3648 dbSNP
rs1392344006 3650 dbSNP
rs1205404969 3651 dbSNP
rs1033890494 3657 dbSNP
rs1362015750 3658 dbSNP
rs1184033303 3660 dbSNP
rs1056526861 3668 dbSNP
rs888657040 3669 dbSNP
rs1199043234 3670 dbSNP
rs1489878588 3671 dbSNP
rs1456486057 3673 dbSNP
rs1006140104 3679 dbSNP
rs917620627 3685 dbSNP
rs1210522099 3687 dbSNP
rs371088060 3695 dbSNP
rs188554154 3696 dbSNP
rs1230584644 3700 dbSNP
rs1351553971 3703 dbSNP
rs577306044 3704 dbSNP
rs1402644825 3708 dbSNP
rs1036802244 3719 dbSNP
rs998264865 3724 dbSNP
rs2147768 3727 dbSNP
rs562006369 3730 dbSNP
rs898303505 3738 dbSNP
rs1029700341 3750 dbSNP
rs1382656603 3752 dbSNP
rs192735944 3754 dbSNP
rs1189416852 3771 dbSNP
rs986087571 3773 dbSNP
rs1197018468 3792 dbSNP
rs1477128899 3807 dbSNP
rs1410392309 3813 dbSNP
rs553605879 3814 dbSNP
rs770373906 3818 dbSNP
rs1172076947 3828 dbSNP
rs185117436 3829 dbSNP
rs1397734420 3831 dbSNP
rs1446537449 3832 dbSNP
rs1464621168 3833 dbSNP
rs1246717554 3834 dbSNP
rs1325947816 3839 dbSNP
rs957908328 3840 dbSNP
rs1049628319 3842 dbSNP
rs1439151673 3844 dbSNP
rs1273582675 3845 dbSNP
rs747876078 3846 dbSNP
rs1346637993 3852 dbSNP
rs1275114886 3853 dbSNP
rs889699225 3856 dbSNP
rs1324232330 3858 dbSNP
rs1008173306 3864 dbSNP
rs1020013412 3864 dbSNP
rs771854700 3865 dbSNP
rs1173923255 3866 dbSNP
rs1010705874 3875 dbSNP
rs140167281 3889 dbSNP
rs1173420962 3901 dbSNP
rs1475125818 3909 dbSNP
rs968820970 3918 dbSNP
rs945148374 3921 dbSNP
rs1280307675 3922 dbSNP
rs980239001 3922 dbSNP
rs1208422479 3927 dbSNP
rs1444543751 3933 dbSNP
rs762261765 3940 dbSNP
rs1278875822 3960 dbSNP
rs1213696333 3962 dbSNP
rs927501948 3963 dbSNP
rs772774993 3968 dbSNP
rs1228526215 3974 dbSNP
rs746602511 3980 dbSNP
rs1334652121 3981 dbSNP
rs143990674 3989 dbSNP
rs753626628 3990 dbSNP
rs927672125 3998 dbSNP
rs1327947596 4007 dbSNP
rs1219279693 4020 dbSNP
rs1368974123 4027 dbSNP
rs917551160 4028 dbSNP
rs1450214139 4032 dbSNP
rs562276030 4036 dbSNP
rs937680219 4039 dbSNP
rs1475608758 4040 dbSNP
rs1180683882 4052 dbSNP
rs1188091469 4055 dbSNP
rs1421250459 4058 dbSNP
rs1054682683 4061 dbSNP
rs530920451 4062 dbSNP
rs1005776448 4067 dbSNP
rs1276371111 4068 dbSNP
rs61823795 4077 dbSNP
rs61823796 4079 dbSNP
rs1205210880 4080 dbSNP
rs1310467005 4081 dbSNP
rs566281155 4081 dbSNP
rs1229898116 4084 dbSNP
rs1037632113 4092 dbSNP
rs1037149880 4098 dbSNP
rs1439796620 4105 dbSNP
rs1165209718 4108 dbSNP
rs1310143239 4109 dbSNP
rs1419303995 4113 dbSNP
rs544322824 4123 dbSNP
rs897310553 4128 dbSNP
rs919671809 4133 dbSNP
rs931083210 4136 dbSNP
rs1162775527 4138 dbSNP
rs1407520180 4139 dbSNP
rs1049575360 4143 dbSNP
rs1176944024 4147 dbSNP
rs564239786 4149 dbSNP
rs1349854454 4160 dbSNP
rs1253493502 4161 dbSNP
rs889645470 4166 dbSNP
rs1029751250 4171 dbSNP
rs970344002 4175 dbSNP
rs1322215510 4186 dbSNP
rs1315574974 4188 dbSNP
rs1283526642 4191 dbSNP
rs9249 4195 dbSNP
rs1352163334 4199 dbSNP
rs115640057 4204 dbSNP
rs117216397 4208 dbSNP
rs116166770 4215 dbSNP
rs541240549 4216 dbSNP
rs760103785 4217 dbSNP
rs1220 4222 dbSNP
rs1289027614 4238 dbSNP
rs569089667 4239 dbSNP
rs1160390331 4243 dbSNP
rs1479880542 4243 dbSNP
rs1264868573 4244 dbSNP
rs982313291 4247 dbSNP
rs1447475465 4255 dbSNP
rs927724395 4258 dbSNP
rs1218738395 4265 dbSNP
rs537837600 4265 dbSNP
rs11540488 4270 dbSNP
rs775970816 4273 dbSNP
rs15325 4274 dbSNP
rs1331141793 4275 dbSNP
rs1487840773 4276 dbSNP
rs937732694 4277 dbSNP
rs1222695267 4279 dbSNP
rs1001603561 4281 dbSNP
rs1034463272 4287 dbSNP
rs1388567217 4293 dbSNP
rs960254321 4295 dbSNP
rs763248368 4298 dbSNP
rs764479300 4301 dbSNP
rs993459875 4302 dbSNP
rs751835359 4306 dbSNP
rs1391504441 4308 dbSNP
rs941638927 4314 dbSNP
rs1321595650 4325 dbSNP
rs189995198 4326 dbSNP
rs1375550087 4329 dbSNP
rs571314044 4334 dbSNP
rs962647702 4336 dbSNP
rs998369423 4340 dbSNP
rs533880157 4341 dbSNP
rs1162171469 4342 dbSNP
rs1186138256 4344 dbSNP
rs149069844 4347 dbSNP
rs931030947 4354 dbSNP
rs1254468594 4362 dbSNP
rs1401744416 4364 dbSNP
rs1235780720 4368 dbSNP
rs1160986692 4370 dbSNP
rs1359023536 4372 dbSNP
rs1312998904 4380 dbSNP
rs889887192 4381 dbSNP
rs766442649 4391 dbSNP
rs1399847182 4396 dbSNP
rs370558953 4403 dbSNP
rs1006957561 4404 dbSNP
rs767760524 4407 dbSNP
rs1367938705 4415 dbSNP
rs1299062053 4421 dbSNP
rs1033039400 4423 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A HITS-CLIP data was present in Chi_ControlA_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control A HITS-CLIP data was present in Chi_ControlB_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000263733.4 | 3UTR | UGGAGAAAACCAACC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset Chi_ControlA_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control A
Location of target site ENST00000263733.4 | 3UTR | UGGAGAAAACCAACC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset Chi_ControlB_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control B
Location of target site ENST00000263733.4 | 3UTR | UGGAGAAAACCAACC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
62 hsa-miR-758-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT085323 MORC3 MORC family CW-type zinc finger 3 2 2
MIRT089441 STAMBP STAM binding protein 2 2
MIRT089456 TET3 tet methylcytosine dioxygenase 3 2 2
MIRT111856 CCND1 cyclin D1 2 2
MIRT184933 ZNF268 zinc finger protein 268 2 2
MIRT215288 CREBRF CREB3 regulatory factor 2 2
MIRT237300 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT238446 MYO10 myosin X 2 4
MIRT273827 RPL41 ribosomal protein L41 2 2
MIRT282703 HOOK1 hook microtubule tethering protein 1 2 2
MIRT347970 ZNF850 zinc finger protein 850 2 2
MIRT371076 KLF3 Kruppel like factor 3 2 2
MIRT464339 USP6NL USP6 N-terminal like 2 2
MIRT470034 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 2
MIRT477506 ELL2 elongation factor for RNA polymerase II 2 2 2
MIRT482886 CACNA2D3 calcium voltage-gated channel auxiliary subunit alpha2delta 3 2 2
MIRT492606 POLR3E RNA polymerase III subunit E 2 2
MIRT502294 GNG12 G protein subunit gamma 12 2 6
MIRT507600 DCTN4 dynactin subunit 4 2 4
MIRT510728 SON SON DNA binding protein 2 6
MIRT514065 KCNJ6 potassium voltage-gated channel subfamily J member 6 2 8
MIRT519718 ZNF512B zinc finger protein 512B 2 4
MIRT520890 STRN striatin 2 2
MIRT521760 PPIL1 peptidylprolyl isomerase like 1 2 6
MIRT526874 ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit 2 2
MIRT530232 WSB2 WD repeat and SOCS box containing 2 2 2
MIRT532003 ACTR2 ARP2 actin related protein 2 homolog 2 2
MIRT533371 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 4
MIRT547106 PIGW phosphatidylinositol glycan anchor biosynthesis class W 2 2
MIRT548189 FOXA1 forkhead box A1 2 2
MIRT552935 VKORC1L1 vitamin K epoxide reductase complex subunit 1 like 1 2 2
MIRT560085 ZNF195 zinc finger protein 195 2 2
MIRT561726 PPP2CA protein phosphatase 2 catalytic subunit alpha 2 2
MIRT562713 ZNF415 zinc finger protein 415 2 2
MIRT562761 ZNF846 zinc finger protein 846 2 2
MIRT564159 ZNF117 zinc finger protein 117 2 2
MIRT565673 SETD5 SET domain containing 5 2 2
MIRT565718 SESN3 sestrin 3 2 2
MIRT566026 RFX1 regulatory factor X1 2 2
MIRT569048 ZNF655 zinc finger protein 655 2 2
MIRT570367 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 2
MIRT570410 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 2
MIRT570443 TMEM189 transmembrane protein 189 2 2
MIRT571738 RNF11 ring finger protein 11 2 2
MIRT575042 Tpgs2 tubulin polyglutamylase complex subunit 2 2 4
MIRT614330 ZDHHC22 zinc finger DHHC-type containing 22 2 2
MIRT617629 RAB3IP RAB3A interacting protein 2 2
MIRT621667 UBE4B ubiquitination factor E4B 2 2
MIRT639906 SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 2 2
MIRT651436 XRCC5 X-ray repair cross complementing 5 2 2
MIRT683853 ZNF208 zinc finger protein 208 2 2
MIRT684841 TPGS2 tubulin polyglutamylase complex subunit 2 2 5
MIRT689347 ZNF83 zinc finger protein 83 2 2
MIRT692492 SPIN4 spindlin family member 4 2 2
MIRT695711 OLA1 Obg like ATPase 1 2 2
MIRT698219 TMEM248 transmembrane protein 248 2 2
MIRT711560 FAM20B FAM20B, glycosaminoglycan xylosylkinase 2 2
MIRT712867 TMEM67 transmembrane protein 67 2 2
MIRT722956 TSPAN1 tetraspanin 1 2 2
MIRT723622 SOBP sine oculis binding protein homolog 2 2
MIRT724176 ABCF2 ATP binding cassette subfamily F member 2 2 2
MIRT755363 LMBR1 limb development membrane protein 1 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-758 Hydroxycamptothecin (HCPT) NULL 97226 Microarray human Tenon's fibroblasts (HTFs) 24681041 2014 down-regulated
miR-758 Diethylstilbestrol approved 448537 Microarray mammosphere-derived epithelial cells (MDEC) 19549897 2009 up-regulated
miR-758 5-Fluorouracil approved 3385 Quantitative real-time PCR human squamous cell carcinoma cell line KYSE410 21743970 2011 up-regulated
miR-758 Reversine NULL 210332 Microarray C2C12 myoblast cells 24513286 2014 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-758 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-758 Fluorouracil 3385 NSC19893 approved resistant cell line (KYSE)
hsa-mir-758 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-758-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-758-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-758-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-758-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (BAS)
hsa-miR-758-5p Doxorubicin 31703 NSC123127 approved sensitive cell line (BAS)
hsa-miR-758-5p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-758-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-758-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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