pre-miRNA Information
pre-miRNA hsa-mir-4419b   
Genomic Coordinates chr12: 128244506 - 128244573
Description Homo sapiens miR-4419b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4419b
Sequence 42| GAGGCUGAAGGAAGAUGG |59
Evidence Experimental
Experiments Illumina
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol IREB2   
Synonyms ACO3, IRP2, IRP2AD
Description iron responsive element binding protein 2
Transcript NM_004136   
Expression
Putative miRNA Targets on IREB2
3'UTR of IREB2
(miRNA target sites are highlighted)
>IREB2|NM_004136|3'UTR
   1 TATCTACTTACCATAGATACCTTTCATAACTGGTAACTGCAAAGCCTTTTGTGCTGGACCCAGGAATCCTTACCATGGAG
  81 CAGCAGATAGTCCCAGTATACTCACTTATCTCATCCATGGATGTAAATGATGATGAATCAACATAGTAACTGAAATGAAA
 161 TCTTCTTGATTTTAAATAATATACGAATGGTGCTATTAATATTGCTAAAATCAACGTGTGAAGTGTGTTGTGGAAGAGAC
 241 CTGTAAGTATGGGGGGGGGGCGATATTTTATCAGACCATTTTGTAAATAAAGGCAGAATTTGTGTTGAAGATTCTTATAT
 321 GAATAACCTTCCTGGATTTGTTTAGTTTTGCACCAATAAAACTGTGTACTACTGTTTGTTGGTTTAAGAGTAGCAGATTG
 401 AAATATAAGAAGCCAGATTAGACTCTAAAATTGTGGCCATTGGAATCTCATTTATAAATGGACCTTTTAAGTATATTAAT
 481 TCCTCTTCAGAATTGAGCTGGACACATTTGGCATTCTTAGTTTGTCATATAACCAGGTTTATCCTTAGTCTAACTGCAAG
 561 GGATGGAACCTGCCCCAGGTCACAATCATTCTGTCCAATCCAGCCAAGGTTCCCTCCACATATGAAGATGGACCATGGCA
 641 GGATACAACTGATTGTGTGGCACCATGTATTAGCAGTGGGAATATGTATCACATATGATGCAGCCTTTCATATTTCAGCA
 721 GTTTGCCACTGTGACTGTCTGGCAAGCCCCCAGATGGCGTTATATTAATTGGATTAGATTATTTTGCTCACCTTATGTAA
 801 TACTGTAACTTCCTATAACCTAATATTTTCGGTATCATTAACCAAAATTTCACACTCATAGTTGCTAAAGAGAATGTTAT
 881 TCAATCATTAAACTCTGAACTGATTTCTTCTATACATTTAAATTATCCACCCTCAATAATACGGGTGCTCAACCCTATGC
 961 ATTTTTTAAGTGTTGCTATTTCTTAATTAAATTGATTTCCTGTCATTTTGAATCATTTATCACCTGCGATGCATGATTCT
1041 ATTAATTTTGTTATGTTACTGTTTTAACCAAAGCTGACCGTAAGGATAAAACACTTAAGTTGTTGCTGAGTACTATATAT
1121 CCTCAATATGCATGTCTGCCCATCACATCAAATGTTCTGTCAACAAGATGTTTGGTAATTTTTTTTAAAAAGGTTGGAAA
1201 ATTAATTATAGAAGGTTCTATACTGTTTTTTTAATTAAGAAACTAAGTCTAGCAGGCTAAAGGTTAATTGTAGTGATTTT
1281 TTTTCACATAGATATCTTTCTATGACCTAGTTAGTTACTGCAATTCAGAATTAGTTCACATTGCATAAAGAATTACTTGT
1361 TGTAAGCAAAATGCTGAAACTACCAAACCAGTGGATGAAGACCACTAAGAACTTTGCACATAATCATACAATCTTTTGAA
1441 AATATTTTGCAAATATGTGTTTAGACAATAAGATGGACTAGAGTTCGACAAAATGATTTCTTTATTTAAATTTTGTATAA
1521 GTATTTTCTTCGACACTTTCAAATTATATTGTGTTCTTGATATATGCTGTATATTTATTTGTTAGTGCATGTGTTTTTAA
1601 TTTACATGAAAACATGAGTTAGGAGAAATTACAGGTTGAAAGATGAAATGCCTGTATGTGCTCTGAAGAAATGGTAATTC
1681 CAGATTGTGCAGGGGGAAACAAATCTATTTTGTTTTGTTTTGTTTTTTGAGACGGAGTCTTGCCCTGTGGCTGGGCTGGA
1761 GTGCAATGGCGCGATCTTGGCTCACTGCAACCTCCGCCTCCCGGGTTCAGGGGATTCTCCTGCCTCAGCCTCCTGAGTAG
1841 CTGGGACTACAAGCATGCACCACCACGCCCAGCTAATTTTTGTAGTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAG
1921 ATGATCTGAATCTCTTGACCTCGTGATCCGCCCGCCTTGGCCTCCACAAGTGCTGGGATTACAGGTGTGAGCCACCACAC
2001 CCGGCCTATATTGTTTTGAAAGCATACTCTATATATAGTTATGGGCAGAGGCACAGGCATCCTCAGCAGCTGATTCAGGA
2081 GATGATGGTAAAGCTAGCTAACTATGAATTAAACATTCACATATCCAGTCTACCTGGTCCAGTAATAATACAAGCAAATC
2161 TTGTATTTCAGGAACAAATCAAGGTTCTCTTAATTTTTTGGCTTATATACAATGAAGTAAAAACTTGATAAACATGGTTT
2241 CAAATTGAGGAGGAGAGTCTTGGATGTATGTTTTAATATGTATACCTTATAATTCTGCCTCTAGCCAAATGCTATGTTTG
2321 CAAAATGTGGCATCTGTTAGTTTTTATTGTCTGTGTCTTCTTTGTTTACTATACCTTGGGTAATTTTGTGTTACCAAAAA
2401 AAAAAAAAAAAAAAGGAAGTGTAATGTCAGACACACAAGAAAAGCAAATCAGTGTTGTAAGCTTAAAGTACAATTTCAAA
2481 GGTCACTACCAACAGCAGGGTTTTTTTTATACTTTGAAAACATTATGCTACATATCATTGCCATTTTCATATTTTGGGGT
2561 TTTGCTACTCTTATACAATGGAATCAATGGAAATGTCATCCAGCCACTGAATTGCCATTATTATATCTAAAAAGTTTCTA
2641 AGATGACAGTTATCACTATTTTGTTTTATCTCCATGCTGACATTTGAAAGAAGGTACTAGTATCCCTCTAGCCAGATTGC
2721 TTAGTTTTTCGTTGGTAATCAAACAACAGTTGTACTAAAGGAAAGTAAAGCTAGGACCTAAATCAGAATCATAGTTGCCT
2801 GCATATATGGTAACAAGGTCGTGTGCATTTGCTTTCACAGTGATGAGTGAGAGGATGAGAAGAAATTATTTGACATTTTT
2881 CTGTGGTTGAATAGAAGACACCTTTCTTTTGTCTTTAGGTTTAGGAGGAGATACTAAGATACTGGATGTTTATCCTATCT
2961 TAGTTTGGTTGGAGTAATAAGAGAGAAGAAGAGGGTGGACTTTGGCTTTTCAGTGTTTTTTCCCCTAAAGAGTGATATTG
3041 CTGACGTTTCTATCAATTTTACACATAATATGTGGCTATGAAACCATATATCTCACTTAAGTAACAAAGTAATCACTTTG
3121 TCTATCACTAAGTAATAGACAAAAATCATTGTCTATTATTTAAAGCCAACAAAACAGTGTAACAGTTTTAAGTTCAATAA
3201 TGTTAAGTATTGTATAGAAATATATTGGAGGCAAAGTTCAGTTGATGACAATTGTGTATATGTTACTGATGCTGTAAATT
3281 ATTTTTAATAAAGAAAATTGTATTATCACATTT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ggUAGAAGGA---AGUCGGAg 5'
            ||: ||||   ||||||| 
Target 5' ggATTCTCCTGCCTCAGCCTc 3'
1812 - 1832 156.00 -17.50
2
miRNA  3' ggUAGAAGGAAGUCGGAg 5'
            :|:| :| |:||:|| 
Target 5' agGTTTATCCTTAGTCTa 3'
535 - 552 120.00 -9.50
3
miRNA  3' gguagaaggaaGUCGGAg 5'
                     |||||| 
Target 5' cacatatgatgCAGCCTt 3'
690 - 707 120.00 -11.12
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN8478779 25 COSMIC
COSN30510041 26 COSMIC
COSN30140013 58 COSMIC
COSN31592294 64 COSMIC
COSN30160618 65 COSMIC
COSN30160621 79 COSMIC
COSN30545040 82 COSMIC
COSN30125584 93 COSMIC
COSN20078356 98 COSMIC
COSN31581360 116 COSMIC
COSN20112300 261 COSMIC
COSN28645065 357 COSMIC
COSN20093014 399 COSMIC
COSN31480742 426 COSMIC
COSN26643255 434 COSMIC
COSN31544903 461 COSMIC
COSN17255531 707 COSMIC
COSN27834190 917 COSMIC
COSN8478780 1098 COSMIC
COSN8390113 1329 COSMIC
COSN30066223 1644 COSMIC
COSN23087702 1704 COSMIC
COSN19505207 1973 COSMIC
COSN22553966 2044 COSMIC
COSN20112306 2413 COSMIC
COSN29449110 2581 COSMIC
COSN5174728 2585 COSMIC
COSN31567490 3154 COSMIC
COSN30177107 3245 COSMIC
COSN31567779 3269 COSMIC
rs12899351 1914 GWAS
rs7174348 1955 GWAS
rs1062980 2043 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1402135916 3 dbSNP
rs1168290981 7 dbSNP
rs1386048226 10 dbSNP
rs1356762919 11 dbSNP
rs774842959 14 dbSNP
rs1351400671 17 dbSNP
rs372754030 18 dbSNP
rs781324922 20 dbSNP
rs770639064 21 dbSNP
rs1316429719 22 dbSNP
rs1222891092 24 dbSNP
rs375292578 26 dbSNP
rs755810404 26 dbSNP
rs756563596 28 dbSNP
rs1444770027 31 dbSNP
rs759035193 37 dbSNP
rs765115729 40 dbSNP
rs1252071766 44 dbSNP
rs371228511 46 dbSNP
rs762773870 51 dbSNP
rs1406531253 52 dbSNP
rs185343036 55 dbSNP
rs1202288572 59 dbSNP
rs1459498557 64 dbSNP
rs946986357 65 dbSNP
rs974864545 67 dbSNP
rs1195594214 88 dbSNP
rs1337679969 91 dbSNP
rs1468537373 93 dbSNP
rs1245571660 96 dbSNP
rs1382072739 106 dbSNP
rs564952333 110 dbSNP
rs978347952 112 dbSNP
rs930484965 126 dbSNP
rs1300223896 127 dbSNP
rs576807493 129 dbSNP
rs924240044 132 dbSNP
rs934346918 134 dbSNP
rs1164678957 138 dbSNP
rs1384026978 152 dbSNP
rs1056780587 153 dbSNP
rs777362589 161 dbSNP
rs1346831173 164 dbSNP
rs907785700 166 dbSNP
rs1224099043 167 dbSNP
rs370292469 185 dbSNP
rs540634531 186 dbSNP
rs1210607019 188 dbSNP
rs1206385070 189 dbSNP
rs1045614061 197 dbSNP
rs1251613034 200 dbSNP
rs1372462784 211 dbSNP
rs1481086327 213 dbSNP
rs1355753978 216 dbSNP
rs748145406 217 dbSNP
rs1441175588 240 dbSNP
rs560861491 244 dbSNP
rs888313363 246 dbSNP
rs1005440739 248 dbSNP
rs1364579606 250 dbSNP
rs1405117720 250 dbSNP
rs1161130653 251 dbSNP
rs3215140 251 dbSNP
rs398028061 251 dbSNP
rs530260431 251 dbSNP
rs559981387 251 dbSNP
rs1001135944 252 dbSNP
rs1036950866 253 dbSNP
rs897137133 254 dbSNP
rs998201407 255 dbSNP
rs1200829806 256 dbSNP
rs1218862744 261 dbSNP
rs1029698849 262 dbSNP
rs748880232 263 dbSNP
rs768403665 265 dbSNP
rs562112309 271 dbSNP
rs774178179 279 dbSNP
rs117154263 288 dbSNP
rs766661994 294 dbSNP
rs1276326092 295 dbSNP
rs189809214 300 dbSNP
rs1223964254 309 dbSNP
rs1344462580 310 dbSNP
rs1300947281 319 dbSNP
rs1021084659 329 dbSNP
rs1345216368 348 dbSNP
rs1317035835 349 dbSNP
rs1399391422 352 dbSNP
rs78870290 357 dbSNP
rs1177580453 363 dbSNP
rs1009187859 365 dbSNP
rs1427425501 368 dbSNP
rs1196070773 369 dbSNP
rs771720290 396 dbSNP
rs1241533924 405 dbSNP
rs978289360 409 dbSNP
rs1019206327 413 dbSNP
rs1461221008 424 dbSNP
rs773215407 427 dbSNP
rs1445207314 439 dbSNP
rs760758957 441 dbSNP
rs974728754 446 dbSNP
rs766071725 447 dbSNP
rs1281167770 458 dbSNP
rs1215902795 459 dbSNP
rs182282816 461 dbSNP
rs1269069685 462 dbSNP
rs1428110747 465 dbSNP
rs1361380843 472 dbSNP
rs1338008382 474 dbSNP
rs549888443 483 dbSNP
rs1469769996 484 dbSNP
rs1404309044 487 dbSNP
rs1173296851 491 dbSNP
rs916939966 498 dbSNP
rs948487832 506 dbSNP
rs80051964 511 dbSNP
rs1044544176 527 dbSNP
rs1301934502 528 dbSNP
rs909680209 547 dbSNP
rs941195237 555 dbSNP
rs1343577697 556 dbSNP
rs2055588 566 dbSNP
rs927198096 570 dbSNP
rs897063369 573 dbSNP
rs3743079 577 dbSNP
rs1054028636 578 dbSNP
rs1306696035 583 dbSNP
rs1227037781 584 dbSNP
rs892881766 596 dbSNP
rs3743080 599 dbSNP
rs1212267859 604 dbSNP
rs1384316577 606 dbSNP
rs1315172847 608 dbSNP
rs117082176 610 dbSNP
rs889819154 613 dbSNP
rs902720396 615 dbSNP
rs1462870272 617 dbSNP
rs570780954 621 dbSNP
rs1354137676 624 dbSNP
rs1168549476 630 dbSNP
rs1223351720 630 dbSNP
rs1385879937 633 dbSNP
rs1183067505 646 dbSNP
rs752942250 654 dbSNP
rs1490021363 656 dbSNP
rs536195039 661 dbSNP
rs758418463 664 dbSNP
rs1019236015 666 dbSNP
rs1262927658 670 dbSNP
rs964935280 674 dbSNP
rs1201949068 676 dbSNP
rs1022819927 682 dbSNP
rs1291790780 686 dbSNP
rs1244689670 693 dbSNP
rs1357908945 693 dbSNP
rs375411666 698 dbSNP
rs554900138 701 dbSNP
rs865788802 703 dbSNP
rs1168722953 715 dbSNP
rs952132547 720 dbSNP
rs569895270 726 dbSNP
rs778879432 735 dbSNP
rs112229218 736 dbSNP
rs999634494 743 dbSNP
rs1406923069 744 dbSNP
rs1366502318 746 dbSNP
rs1424835590 753 dbSNP
rs764165800 759 dbSNP
rs374161487 760 dbSNP
rs992401840 763 dbSNP
rs981209898 790 dbSNP
rs1161152281 805 dbSNP
rs1419626960 812 dbSNP
rs1289356985 830 dbSNP
rs558701802 831 dbSNP
rs927234172 832 dbSNP
rs1316832366 857 dbSNP
rs1385282677 858 dbSNP
rs937222288 858 dbSNP
rs916886090 867 dbSNP
rs970128125 869 dbSNP
rs576835570 885 dbSNP
rs1291202899 898 dbSNP
rs909638479 902 dbSNP
rs1218606108 904 dbSNP
rs1305302958 905 dbSNP
rs941119798 908 dbSNP
rs1261857847 913 dbSNP
rs945702057 930 dbSNP
rs371035399 934 dbSNP
rs1041493062 935 dbSNP
rs1302817229 936 dbSNP
rs890857987 937 dbSNP
rs1485797227 943 dbSNP
rs944869123 944 dbSNP
rs781388674 955 dbSNP
rs918464229 957 dbSNP
rs900762751 958 dbSNP
rs1444937440 960 dbSNP
rs541025049 962 dbSNP
rs1182584190 966 dbSNP
rs185879895 979 dbSNP
rs1051462083 984 dbSNP
rs1401907251 985 dbSNP
rs1028317744 999 dbSNP
rs887805436 1000 dbSNP
rs889754325 1001 dbSNP
rs1263138566 1005 dbSNP
rs539535981 1011 dbSNP
rs1005277759 1013 dbSNP
rs138678339 1014 dbSNP
rs1259530894 1015 dbSNP
rs746203642 1016 dbSNP
rs756456040 1023 dbSNP
rs1324663570 1024 dbSNP
rs1338464248 1025 dbSNP
rs1383237621 1027 dbSNP
rs375964913 1028 dbSNP
rs542960198 1037 dbSNP
rs1296385310 1052 dbSNP
rs1314588009 1055 dbSNP
rs999603343 1061 dbSNP
rs1384135374 1074 dbSNP
rs1318507362 1075 dbSNP
rs1031119577 1080 dbSNP
rs1225561270 1081 dbSNP
rs192462073 1083 dbSNP
rs1034113381 1086 dbSNP
rs1193242670 1095 dbSNP
rs1374494491 1095 dbSNP
rs1427444738 1098 dbSNP
rs1316847482 1103 dbSNP
rs1259089764 1113 dbSNP
rs1013796093 1126 dbSNP
rs1462167937 1128 dbSNP
rs958525580 1130 dbSNP
rs1207381522 1140 dbSNP
rs1024328038 1142 dbSNP
rs969723681 1143 dbSNP
rs980164198 1148 dbSNP
rs945761734 1160 dbSNP
rs374684094 1161 dbSNP
rs531819477 1164 dbSNP
rs1317283802 1169 dbSNP
rs1202684588 1179 dbSNP
rs1016625475 1187 dbSNP
rs543583598 1188 dbSNP
rs183844198 1209 dbSNP
rs972511727 1218 dbSNP
rs1398142369 1220 dbSNP
rs188666541 1221 dbSNP
rs1461190457 1226 dbSNP
rs1406525682 1233 dbSNP
rs1445763650 1241 dbSNP
rs1185840789 1244 dbSNP
rs900710360 1244 dbSNP
rs8033501 1248 dbSNP
rs1049347030 1251 dbSNP
rs1195396229 1263 dbSNP
rs1294033868 1270 dbSNP
rs747805206 1270 dbSNP
rs1406592135 1274 dbSNP
rs1360037145 1277 dbSNP
rs542381861 1277 dbSNP
rs1015302873 1279 dbSNP
rs907307578 1285 dbSNP
rs1337255644 1288 dbSNP
rs911116631 1289 dbSNP
rs771701977 1295 dbSNP
rs1044113288 1296 dbSNP
rs772912943 1303 dbSNP
rs564289097 1308 dbSNP
rs1385129019 1312 dbSNP
rs935382621 1319 dbSNP
rs1471456231 1321 dbSNP
rs1364685390 1322 dbSNP
rs1052472472 1324 dbSNP
rs1181621802 1331 dbSNP
rs1482187118 1337 dbSNP
rs1021555358 1341 dbSNP
rs967677609 1342 dbSNP
rs149383073 1343 dbSNP
rs1490195503 1346 dbSNP
rs1289710602 1351 dbSNP
rs1372687614 1353 dbSNP
rs977121234 1356 dbSNP
rs530097318 1357 dbSNP
rs1279921246 1358 dbSNP
rs1014186735 1360 dbSNP
rs1348216206 1362 dbSNP
rs1285714815 1365 dbSNP
rs1304628791 1365 dbSNP
rs1405216356 1366 dbSNP
rs147053534 1367 dbSNP
rs905427398 1369 dbSNP
rs1386381488 1375 dbSNP
rs1471836068 1376 dbSNP
rs1431943075 1380 dbSNP
rs965039841 1388 dbSNP
rs1006515340 1395 dbSNP
rs1223307380 1396 dbSNP
rs1244985349 1403 dbSNP
rs1276881521 1416 dbSNP
rs975182338 1421 dbSNP
rs921000533 1426 dbSNP
rs192822075 1427 dbSNP
rs1231858106 1429 dbSNP
rs962379723 1432 dbSNP
rs1326772314 1438 dbSNP
rs993879684 1440 dbSNP
rs533147548 1446 dbSNP
rs909470986 1451 dbSNP
rs1344483115 1453 dbSNP
rs371656232 1459 dbSNP
rs955179921 1466 dbSNP
rs1318197934 1467 dbSNP
rs1327496316 1467 dbSNP
rs770937085 1469 dbSNP
rs1456133361 1477 dbSNP
rs987020741 1486 dbSNP
rs1177603497 1487 dbSNP
rs1469476244 1488 dbSNP
rs1170599918 1497 dbSNP
rs1423398713 1497 dbSNP
rs1475806212 1514 dbSNP
rs1421382936 1515 dbSNP
rs73463012 1516 dbSNP
rs1329767950 1518 dbSNP
rs546549744 1524 dbSNP
rs1354053343 1526 dbSNP
rs979379137 1532 dbSNP
rs925245273 1533 dbSNP
rs182728971 1537 dbSNP
rs1052443532 1541 dbSNP
rs1296242073 1543 dbSNP
rs1404810569 1549 dbSNP
rs1385706582 1553 dbSNP
rs1273513249 1556 dbSNP
rs1452431458 1563 dbSNP
rs894536126 1564 dbSNP
rs1011427273 1567 dbSNP
rs1418825972 1572 dbSNP
rs917989902 1572 dbSNP
rs1166804057 1574 dbSNP
rs1447581961 1578 dbSNP
rs1244943614 1581 dbSNP
rs1183935048 1582 dbSNP
rs1482780856 1586 dbSNP
rs1214835549 1589 dbSNP
rs759330170 1590 dbSNP
rs1206112255 1594 dbSNP
rs1307721493 1613 dbSNP
rs764957883 1614 dbSNP
rs905395517 1618 dbSNP
rs1225619299 1619 dbSNP
rs1362195662 1642 dbSNP
rs1316404630 1645 dbSNP
rs1228285764 1649 dbSNP
rs1377372232 1651 dbSNP
rs1300283873 1655 dbSNP
rs1224081806 1657 dbSNP
rs1354238009 1665 dbSNP
rs570535502 1670 dbSNP
rs967230064 1679 dbSNP
rs1426664402 1684 dbSNP
rs374923182 1688 dbSNP
rs1164073669 1692 dbSNP
rs1423188393 1694 dbSNP
rs1411276321 1699 dbSNP
rs1268896504 1701 dbSNP
rs1019523673 1708 dbSNP
rs999216200 1708 dbSNP
rs965068240 1716 dbSNP
rs1006850934 1718 dbSNP
rs921030198 1722 dbSNP
rs952527834 1733 dbSNP
rs138501596 1734 dbSNP
rs775625074 1735 dbSNP
rs940868419 1738 dbSNP
rs1389808180 1750 dbSNP
rs1350066711 1762 dbSNP
rs553026867 1767 dbSNP
rs1165557159 1771 dbSNP
rs1407014179 1772 dbSNP
rs1366273461 1773 dbSNP
rs1293019454 1781 dbSNP
rs1025338327 1785 dbSNP
rs955297141 1786 dbSNP
rs1328665285 1788 dbSNP
rs1419497335 1789 dbSNP
rs1411000549 1793 dbSNP
rs367817268 1796 dbSNP
rs1018489294 1797 dbSNP
rs541406462 1804 dbSNP
rs1208797165 1805 dbSNP
rs1269911525 1806 dbSNP
rs1328849147 1810 dbSNP
rs1266637890 1820 dbSNP
rs1225510261 1823 dbSNP
rs963913095 1828 dbSNP
rs938697780 1839 dbSNP
rs554856367 1840 dbSNP
rs1365370293 1848 dbSNP
rs867157040 1851 dbSNP
rs925214011 1853 dbSNP
rs1457724568 1854 dbSNP
rs894567373 1857 dbSNP
rs1156695896 1859 dbSNP
rs751688591 1861 dbSNP
rs988085327 1867 dbSNP
rs576284789 1868 dbSNP
rs1430908205 1869 dbSNP
rs1043143564 1874 dbSNP
rs1187551008 1886 dbSNP
rs917957256 1889 dbSNP
rs1464841673 1899 dbSNP
rs1246568947 1901 dbSNP
rs1206031370 1902 dbSNP
rs1358076584 1908 dbSNP
rs949493222 1911 dbSNP
rs12899351 1914 dbSNP
rs998683725 1917 dbSNP
rs1309283340 1925 dbSNP
rs1296399945 1927 dbSNP
rs926746503 1929 dbSNP
rs1435642607 1932 dbSNP
rs1330686854 1941 dbSNP
rs529149172 1943 dbSNP
rs1318284137 1944 dbSNP
rs1447462325 1950 dbSNP
rs565380295 1951 dbSNP
rs1037929586 1953 dbSNP
rs577368381 1954 dbSNP
rs7174348 1955 dbSNP
rs1464239563 1961 dbSNP
rs1374222465 1963 dbSNP
rs1046754756 1964 dbSNP
rs559783694 1965 dbSNP
rs1439925662 1966 dbSNP
rs1449379517 1967 dbSNP
rs1246776920 1968 dbSNP
rs530132926 1970 dbSNP
rs890803776 1976 dbSNP
rs1255932523 1978 dbSNP
rs1385995409 1984 dbSNP
rs1198886514 1992 dbSNP
rs548574911 1992 dbSNP
rs1008351920 2001 dbSNP
rs113739008 2003 dbSNP
rs575496577 2004 dbSNP
rs984318219 2006 dbSNP
rs899633198 2012 dbSNP
rs1248105561 2025 dbSNP
rs373183035 2038 dbSNP
rs1062980 2043 dbSNP
rs534792754 2044 dbSNP
rs1393922621 2058 dbSNP
rs1398255458 2066 dbSNP
rs1308088557 2071 dbSNP
rs972178662 2076 dbSNP
rs866763546 2077 dbSNP
rs1165970771 2080 dbSNP
rs780630634 2084 dbSNP
rs1368190347 2104 dbSNP
rs1185953847 2115 dbSNP
rs1280730457 2117 dbSNP
rs1025362756 2119 dbSNP
rs970756714 2120 dbSNP
rs938898249 2134 dbSNP
rs1204489031 2135 dbSNP
rs1204479399 2138 dbSNP
rs981241651 2139 dbSNP
rs187281661 2156 dbSNP
rs1357044060 2161 dbSNP
rs942116695 2165 dbSNP
rs973565256 2178 dbSNP
rs1204014116 2184 dbSNP
rs1242402000 2199 dbSNP
rs1243998135 2205 dbSNP
rs915936341 2210 dbSNP
rs17406522 2213 dbSNP
rs1408863830 2228 dbSNP
rs929510447 2229 dbSNP
rs535087061 2234 dbSNP
rs1368099505 2239 dbSNP
rs1365599802 2243 dbSNP
rs1052017693 2245 dbSNP
rs556501396 2246 dbSNP
rs1406457305 2247 dbSNP
rs890762242 2247 dbSNP
rs758171053 2252 dbSNP
rs1390722263 2260 dbSNP
rs1161806851 2269 dbSNP
rs943728052 2272 dbSNP
rs1413205908 2291 dbSNP
rs1181652577 2305 dbSNP
rs1470831742 2309 dbSNP
rs574886580 2315 dbSNP
rs1271132666 2316 dbSNP
rs1039803959 2328 dbSNP
rs1199741221 2330 dbSNP
rs1452085282 2331 dbSNP
rs903237262 2333 dbSNP
rs1410265453 2340 dbSNP
rs899565180 2340 dbSNP
rs1208021217 2341 dbSNP
rs1000612701 2348 dbSNP
rs1032129184 2354 dbSNP
rs1268543237 2358 dbSNP
rs1227325889 2359 dbSNP
rs191727271 2360 dbSNP
rs1284631342 2361 dbSNP
rs183947049 2361 dbSNP
rs1331003268 2365 dbSNP
rs1322105890 2370 dbSNP
rs559182751 2374 dbSNP
rs577400306 2375 dbSNP
rs541578936 2376 dbSNP
rs1034763866 2391 dbSNP
rs1402963931 2391 dbSNP
rs1286350026 2393 dbSNP
rs138003425 2393 dbSNP
rs149674778 2394 dbSNP
rs371732710 2394 dbSNP
rs1491497721 2395 dbSNP
rs201534216 2395 dbSNP
rs745628964 2395 dbSNP
rs775371785 2395 dbSNP
rs1173200551 2396 dbSNP
rs1219483719 2396 dbSNP
rs1248407340 2396 dbSNP
rs1272574273 2396 dbSNP
rs1280350736 2396 dbSNP
rs1326619430 2396 dbSNP
rs1343614613 2396 dbSNP
rs1491581797 2396 dbSNP
rs375080154 2396 dbSNP
rs557710227 2396 dbSNP
rs59011037 2396 dbSNP
rs72234545 2396 dbSNP
rs769672805 2396 dbSNP
rs1433494533 2408 dbSNP
rs187588274 2410 dbSNP
rs1320277599 2412 dbSNP
rs1433399153 2412 dbSNP
rs1271677163 2413 dbSNP
rs1335044596 2413 dbSNP
rs1414133378 2414 dbSNP
rs1169794824 2415 dbSNP
rs1423070419 2415 dbSNP
rs1223906219 2416 dbSNP
rs1390765575 2419 dbSNP
rs1040858473 2421 dbSNP
rs980783737 2422 dbSNP
rs1463347840 2433 dbSNP
rs1034135632 2436 dbSNP
rs1210315331 2439 dbSNP
rs963449672 2446 dbSNP
rs996802329 2449 dbSNP
rs574938846 2466 dbSNP
rs1343458930 2468 dbSNP
rs1297459303 2469 dbSNP
rs1028244341 2474 dbSNP
rs1385364897 2478 dbSNP
rs542254018 2480 dbSNP
rs888134718 2483 dbSNP
rs12441192 2487 dbSNP
rs1430533152 2495 dbSNP
rs746491945 2497 dbSNP
rs1015773986 2501 dbSNP
rs1167835591 2501 dbSNP
rs1447602494 2501 dbSNP
rs1415686980 2502 dbSNP
rs573130500 2509 dbSNP
rs919385000 2510 dbSNP
rs12441256 2517 dbSNP
rs988097438 2522 dbSNP
rs768892738 2526 dbSNP
rs148794508 2531 dbSNP
rs1039371050 2533 dbSNP
rs960194642 2536 dbSNP
rs1203545225 2537 dbSNP
rs1481672471 2539 dbSNP
rs777263821 2562 dbSNP
rs11547856 2564 dbSNP
rs1313867067 2571 dbSNP
rs899543639 2574 dbSNP
rs1377423452 2575 dbSNP
rs991724853 2576 dbSNP
rs193258681 2579 dbSNP
rs1169265571 2581 dbSNP
rs1396647194 2588 dbSNP
rs1349890060 2595 dbSNP
rs781130260 2599 dbSNP
rs76584450 2601 dbSNP
rs185407865 2603 dbSNP
rs1053471155 2604 dbSNP
rs1347321574 2622 dbSNP
rs16969906 2625 dbSNP
rs978761004 2628 dbSNP
rs1300400790 2629 dbSNP
rs1009369000 2634 dbSNP
rs369901790 2644 dbSNP
rs1411382271 2650 dbSNP
rs1046688462 2654 dbSNP
rs924690429 2655 dbSNP
rs1179463895 2659 dbSNP
rs1250419572 2659 dbSNP
rs906447121 2660 dbSNP
rs1266589467 2662 dbSNP
rs1221522769 2666 dbSNP
rs1041145509 2670 dbSNP
rs1229177866 2671 dbSNP
rs901047273 2671 dbSNP
rs1002564329 2675 dbSNP
rs1286503772 2679 dbSNP
rs775322690 2682 dbSNP
rs1253329042 2686 dbSNP
rs1388632888 2694 dbSNP
rs1340262360 2703 dbSNP
rs770043532 2703 dbSNP
rs932456857 2720 dbSNP
rs558174074 2721 dbSNP
rs535215960 2722 dbSNP
rs1033650872 2723 dbSNP
rs1435690407 2730 dbSNP
rs963374740 2731 dbSNP
rs1161186911 2732 dbSNP
rs994897197 2737 dbSNP
rs1026412238 2739 dbSNP
rs763139899 2745 dbSNP
rs1156277800 2746 dbSNP
rs768906054 2748 dbSNP
rs1267471966 2749 dbSNP
rs1491003239 2754 dbSNP
rs1191069133 2756 dbSNP
rs1487796260 2783 dbSNP
rs1250289506 2798 dbSNP
rs1200769878 2811 dbSNP
rs550260123 2822 dbSNP
rs912087424 2828 dbSNP
rs964985301 2832 dbSNP
rs1300682544 2839 dbSNP
rs1218571323 2841 dbSNP
rs1368771328 2844 dbSNP
rs1322273320 2853 dbSNP
rs774459151 2862 dbSNP
rs1431775522 2863 dbSNP
rs1387675701 2865 dbSNP
rs1195733570 2867 dbSNP
rs1286709849 2877 dbSNP
rs1467275035 2884 dbSNP
rs1377635044 2887 dbSNP
rs190311007 2890 dbSNP
rs1036660634 2893 dbSNP
rs1431918427 2900 dbSNP
rs1373300430 2914 dbSNP
rs975410482 2919 dbSNP
rs920892202 2933 dbSNP
rs141554074 2937 dbSNP
rs116930337 2939 dbSNP
rs150719722 2940 dbSNP
rs571404605 2949 dbSNP
rs1483739378 2960 dbSNP
rs1003285697 2978 dbSNP
rs1231222125 2979 dbSNP
rs1345605013 2983 dbSNP
rs1299683587 2984 dbSNP
rs945143569 2987 dbSNP
rs1364124831 2993 dbSNP
rs1293185908 2995 dbSNP
rs1046221463 2997 dbSNP
rs906367285 3004 dbSNP
rs1383726265 3005 dbSNP
rs1397417425 3008 dbSNP
rs879751299 3016 dbSNP
rs1301714045 3022 dbSNP
rs767497969 3025 dbSNP
rs1055470153 3028 dbSNP
rs1295958576 3034 dbSNP
rs1432277034 3040 dbSNP
rs899133911 3042 dbSNP
rs994824984 3047 dbSNP
rs1026340376 3064 dbSNP
rs1169717179 3065 dbSNP
rs1227939014 3071 dbSNP
rs553563265 3073 dbSNP
rs761141212 3076 dbSNP
rs1223001240 3079 dbSNP
rs1190121845 3095 dbSNP
rs766824737 3098 dbSNP
rs1487756133 3106 dbSNP
rs1019080707 3107 dbSNP
rs1198982077 3108 dbSNP
rs1484050498 3114 dbSNP
rs1188659874 3116 dbSNP
rs1478230354 3117 dbSNP
rs979176360 3121 dbSNP
rs924667401 3123 dbSNP
rs1186254161 3125 dbSNP
rs1249394927 3129 dbSNP
rs1246764833 3130 dbSNP
rs1340874096 3133 dbSNP
rs1311504010 3134 dbSNP
rs754291611 3142 dbSNP
rs965250061 3148 dbSNP
rs975000040 3151 dbSNP
rs1308179632 3155 dbSNP
rs1429657956 3156 dbSNP
rs541938270 3157 dbSNP
rs976857875 3167 dbSNP
rs1165332494 3168 dbSNP
rs1458698166 3175 dbSNP
rs3417 3176 dbSNP
rs957647690 3178 dbSNP
rs989088435 3188 dbSNP
rs1348065377 3190 dbSNP
rs913603775 3205 dbSNP
rs945111931 3207 dbSNP
rs1046573422 3209 dbSNP
rs1270745710 3213 dbSNP
rs1211585247 3215 dbSNP
rs927794604 3225 dbSNP
rs755421115 3226 dbSNP
rs937853432 3232 dbSNP
rs763087062 3237 dbSNP
rs1264656334 3243 dbSNP
rs1231062883 3245 dbSNP
rs575076842 3252 dbSNP
rs1330857065 3259 dbSNP
rs751188465 3263 dbSNP
rs909792497 3266 dbSNP
rs1387620831 3279 dbSNP
rs1326062826 3290 dbSNP
rs773539211 3290 dbSNP
rs1387863648 3294 dbSNP
rs1390392968 3298 dbSNP
rs1163293001 3300 dbSNP
rs930585296 3306 dbSNP
rs1434712691 3307 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_ControlB_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gguagaAGGAAGUCGGAg 5'
                |:|| | |||| 
Target 5' aggggaUUCUCCUGCCU- 3'
2 - 18
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_ControlB_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control B
Location of target site ENST00000258886.8 | 3UTR | CAGGGGAUUCUCCUGCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
390 hsa-miR-4419b Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061343 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT072743 GLCE glucuronic acid epimerase 2 2
MIRT180549 TXNIP thioredoxin interacting protein 2 2
MIRT186147 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT271044 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT334761 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 6
MIRT443279 TSPAN15 tetraspanin 15 2 2
MIRT447047 ZNF439 zinc finger protein 439 2 2
MIRT447351 KIF6 kinesin family member 6 2 2
MIRT448925 CKS1B CDC28 protein kinase regulatory subunit 1B 2 2
MIRT452899 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT453087 SUMF2 sulfatase modifying factor 2 2 2
MIRT454071 SLC35E3 solute carrier family 35 member E3 2 2
MIRT456216 LIX1L limb and CNS expressed 1 like 2 6
MIRT456951 LRP10 LDL receptor related protein 10 2 2
MIRT458025 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT459999 RFT1 RFT1 homolog 2 2
MIRT460046 CDCP1 CUB domain containing protein 1 2 2
MIRT460982 STK17B serine/threonine kinase 17b 2 2
MIRT464405 URM1 ubiquitin related modifier 1 2 2
MIRT466256 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 2
MIRT466536 TBXA2R thromboxane A2 receptor 2 2
MIRT470922 PLD5 phospholipase D family member 5 2 8
MIRT472835 MTMR10 myotubularin related protein 10 2 6
MIRT473352 MEMO1 mediator of cell motility 1 2 2
MIRT475504 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT478862 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT480898 BCL9L B-cell CLL/lymphoma 9 like 2 2
MIRT482686 NXN nucleoredoxin 2 4
MIRT484128 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT486172 TLE3 transducin like enhancer of split 3 2 4
MIRT486539 CLCN7 chloride voltage-gated channel 7 2 2
MIRT486588 ZNF619 zinc finger protein 619 2 2
MIRT495475 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT495536 TXNRD2 thioredoxin reductase 2 2 2
MIRT495566 UNC5C unc-5 netrin receptor C 2 2
MIRT495719 PADI1 peptidyl arginine deiminase 1 2 2
MIRT495890 CLOCK clock circadian regulator 2 2
MIRT495932 SLC7A5P2 solute carrier family 7 member 5 pseudogene 2 2 2
MIRT496026 ZBED3 zinc finger BED-type containing 3 2 2
MIRT496216 PAX6 paired box 6 2 2
MIRT496349 VAMP1 vesicle associated membrane protein 1 2 2
MIRT496354 PPY pancreatic polypeptide 2 2
MIRT496400 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT496416 PARVB parvin beta 2 2
MIRT496458 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496519 GINS2 GINS complex subunit 2 2 2
MIRT496562 SLC39A9 solute carrier family 39 member 9 2 2
MIRT498605 KRT8 keratin 8 2 2
MIRT503434 SLC25A45 solute carrier family 25 member 45 2 6
MIRT503573 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT503847 ATP13A4 ATPase 13A4 2 4
MIRT504247 LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 2 4
MIRT505606 SLC35F1 solute carrier family 35 member F1 2 2
MIRT507749 CERS2 ceramide synthase 2 2 4
MIRT508411 C1orf210 chromosome 1 open reading frame 210 2 6
MIRT508508 RSRC1 arginine and serine rich coiled-coil 1 2 6
MIRT508944 AK4 adenylate kinase 4 2 4
MIRT509460 ZNF587 zinc finger protein 587 2 6
MIRT509862 ZNF641 zinc finger protein 641 2 4
MIRT511397 IKZF3 IKAROS family zinc finger 3 2 6
MIRT512517 BTBD19 BTB domain containing 19 2 2
MIRT513507 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 6
MIRT514155 TMEM145 transmembrane protein 145 2 4
MIRT514486 SLPI secretory leukocyte peptidase inhibitor 2 4
MIRT514521 SHISA9 shisa family member 9 2 2
MIRT514970 KLLN killin, p53-regulated DNA replication inhibitor 2 4
MIRT515030 IRAK4 interleukin 1 receptor associated kinase 4 2 6
MIRT515963 C9orf156 tRNA methyltransferase O 2 2
MIRT516092 ZBTB8OS zinc finger and BTB domain containing 8 opposite strand 2 4
MIRT517223 PRIM1 DNA primase subunit 1 2 4
MIRT517459 PEX26 peroxisomal biogenesis factor 26 2 4
MIRT517790 EFCAB11 EF-hand calcium binding domain 11 2 2
MIRT517979 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT519458 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT519599 ZNF805 zinc finger protein 805 2 2
MIRT520339 UBXN2A UBX domain protein 2A 2 2
MIRT521345 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT521571 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT523382 GSG2 histone H3 associated protein kinase 2 8
MIRT524106 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT524886 ARHGAP11A Rho GTPase activating protein 11A 2 4
MIRT528772 CD1D CD1d molecule 2 2
MIRT530665 TRIM56 tripartite motif containing 56 2 2
MIRT531107 PEX13 peroxisomal biogenesis factor 13 2 2
MIRT531575 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT535173 PLEKHB2 pleckstrin homology domain containing B2 2 4
MIRT544168 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT550582 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551039 GDE1 glycerophosphodiester phosphodiesterase 1 2 4
MIRT551295 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT551339 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT552092 SLFN12L schlafen family member 12 like 2 6
MIRT555403 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT557087 HOXB3 homeobox B3 2 2
MIRT559388 ATP11C ATPase phospholipid transporting 11C 2 2
MIRT560305 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT561028 LIN7C lin-7 homolog C, crumbs cell polarity complex component 2 2
MIRT562460 COX6B1 cytochrome c oxidase subunit 6B1 2 4
MIRT562982 PARK7 Parkinsonism associated deglycase 2 2
MIRT563548 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT564412 EMILIN2 elastin microfibril interfacer 2 2 4
MIRT569437 PCGF3 polycomb group ring finger 3 2 2
MIRT572097 EXOC8 exocyst complex component 8 2 2
MIRT575571 Cd99 CD99 antigen 2 2
MIRT575789 Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b 2 2
MIRT576975 Lmtk2 lemur tyrosine kinase 2 2 2
MIRT610864 ARSA arylsulfatase A 2 2
MIRT614061 NTPCR nucleoside-triphosphatase, cancer-related 2 2
MIRT614141 THAP1 THAP domain containing 1 2 6
MIRT615235 BROX BRO1 domain and CAAX motif containing 2 2
MIRT617429 ANP32E acidic nuclear phosphoprotein 32 family member E 2 4
MIRT618882 MBL2 mannose binding lectin 2 2 2
MIRT618984 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619196 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620323 AQP6 aquaporin 6 2 2
MIRT621960 STX7 syntaxin 7 2 2
MIRT622057 SSBP2 single stranded DNA binding protein 2 2 2
MIRT624930 FBXW2 F-box and WD repeat domain containing 2 2 2
MIRT624986 ZNF665 zinc finger protein 665 2 4
MIRT625463 ZNF681 zinc finger protein 681 2 4
MIRT625497 SMAD9 SMAD family member 9 2 2
MIRT625599 KLHL23 kelch like family member 23 2 2
MIRT625668 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT625888 INADL PATJ, crumbs cell polarity complex component 2 2
MIRT626161 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT626238 ZNF749 zinc finger protein 749 2 2
MIRT626631 SLC30A6 solute carrier family 30 member 6 2 2
MIRT626994 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627898 OLFML2A olfactomedin like 2A 2 2
MIRT627988 NDRG3 NDRG family member 3 2 2
MIRT628324 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT628549 ZNF701 zinc finger protein 701 2 2
MIRT629464 WIZ widely interspaced zinc finger motifs 2 2
MIRT630527 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT631487 KLHL21 kelch like family member 21 2 2
MIRT631957 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632178 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632282 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT632321 TMEM185B transmembrane protein 185B 2 2
MIRT632853 IGF1 insulin like growth factor 1 2 2
MIRT632862 HSPA2 heat shock protein family A (Hsp70) member 2 2 2
MIRT633322 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT633398 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633930 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT634785 CBFA2T2 CBFA2/RUNX1 translocation partner 2 2 2
MIRT634851 ABCF1 ATP binding cassette subfamily F member 1 2 2
MIRT636370 OGFRL1 opioid growth factor receptor like 1 2 2
MIRT637219 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT637690 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT639196 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT639599 CD3EAP CD3e molecule associated protein 2 2
MIRT639681 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640669 ARSK arylsulfatase family member K 2 2
MIRT642377 ZNF581 zinc finger protein 581 2 2
MIRT642403 ZNF556 zinc finger protein 556 2 2
MIRT645079 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646475 ZNF669 zinc finger protein 669 2 2
MIRT647325 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT647490 ZNF639 zinc finger protein 639 2 2
MIRT647989 PDE12 phosphodiesterase 12 2 2
MIRT648196 CENPN centromere protein N 2 2
MIRT649006 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT650457 ZNF141 zinc finger protein 141 2 2
MIRT650533 CCDC77 coiled-coil domain containing 77 2 2
MIRT650999 ZNF770 zinc finger protein 770 2 2
MIRT653832 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 4
MIRT655734 NRXN3 neurexin 3 2 2
MIRT657577 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT658610 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT658633 ENAH ENAH, actin regulator 2 2
MIRT659820 CASP16 caspase 16, pseudogene 2 2
MIRT661142 ZNF43 zinc finger protein 43 2 2
MIRT661201 MPPE1 metallophosphoesterase 1 2 2
MIRT661436 MANSC1 MANSC domain containing 1 2 2
MIRT661498 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661682 ZNF623 zinc finger protein 623 2 2
MIRT661796 NLRC3 NLR family CARD domain containing 3 2 2
MIRT661808 NUP85 nucleoporin 85 2 2
MIRT661861 ZNF766 zinc finger protein 766 2 2
MIRT661889 EXOSC6 exosome component 6 2 2
MIRT662291 SLC29A4 solute carrier family 29 member 4 2 2
MIRT662515 ANGPT4 angiopoietin 4 2 2
MIRT662682 LRRC47 leucine rich repeat containing 47 2 2
MIRT662716 C10orf111 chromosome 10 open reading frame 111 2 4
MIRT662834 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT662890 PCDHA6 protocadherin alpha 6 2 2
MIRT663134 ULBP3 UL16 binding protein 3 2 2
MIRT663710 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663869 MUC20 mucin 20, cell surface associated 2 2
MIRT664267 NMUR1 neuromedin U receptor 1 2 2
MIRT664510 POLR3K RNA polymerase III subunit K 2 2
MIRT664659 TRIM65 tripartite motif containing 65 2 2
MIRT664849 HUS1 HUS1 checkpoint clamp component 2 2
MIRT664944 CARD6 caspase recruitment domain family member 6 2 4
MIRT665348 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 2
MIRT665514 UTP15 UTP15, small subunit processome component 2 2
MIRT665648 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT665668 TRAF1 TNF receptor associated factor 1 2 2
MIRT665692 TNPO3 transportin 3 2 2
MIRT665741 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665850 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT665940 TBC1D19 TBC1 domain family member 19 2 4
MIRT666005 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT666172 SNX27 sorting nexin family member 27 2 4
MIRT666373 SHOX short stature homeobox 2 2
MIRT667004 PDPN podoplanin 2 4
MIRT667185 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT667603 LIPC lipase C, hepatic type 2 2
MIRT667828 IRGQ immunity related GTPase Q 2 2
MIRT667862 IPCEF1 interaction protein for cytohesin exchange factors 1 2 2
MIRT668296 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 4
MIRT668463 FAM208A family with sequence similarity 208 member A 2 2
MIRT668580 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT669012 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669103 CDK19 cyclin dependent kinase 19 2 2
MIRT670073 ZNF783 zinc finger family member 783 2 2
MIRT670326 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT670756 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670964 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT670985 MED17 mediator complex subunit 17 2 2
MIRT671195 ZNF891 zinc finger protein 891 2 2
MIRT672423 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672495 YIPF4 Yip1 domain family member 4 2 2
MIRT672537 MGAM maltase-glucoamylase 2 2
MIRT672749 ZNF585B zinc finger protein 585B 2 4
MIRT673390 ZNF124 zinc finger protein 124 2 2
MIRT673452 ZNF583 zinc finger protein 583 2 2
MIRT673917 DCTN6 dynactin subunit 6 2 2
MIRT673952 ZNF500 zinc finger protein 500 2 2
MIRT674102 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674167 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 2 2
MIRT674206 FUT2 fucosyltransferase 2 2 2
MIRT674452 PURB purine rich element binding protein B 2 4
MIRT674687 PLCE1 phospholipase C epsilon 1 2 2
MIRT674701 TMEM59 transmembrane protein 59 2 2
MIRT674800 NPR1 natriuretic peptide receptor 1 2 4
MIRT675247 MAK male germ cell associated kinase 2 2
MIRT676012 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676374 APTX aprataxin 2 2
MIRT676834 TNFSF15 TNF superfamily member 15 2 2
MIRT678193 CRCP CGRP receptor component 2 2
MIRT678293 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT679532 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679669 RABAC1 Rab acceptor 1 2 2
MIRT679850 GPR75 G protein-coupled receptor 75 2 2
MIRT680533 PRIM2 DNA primase subunit 2 2 2
MIRT680563 ZNF584 zinc finger protein 584 2 2
MIRT680577 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT680849 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680888 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT680940 EVC EvC ciliary complex subunit 1 2 2
MIRT680964 SLC15A1 solute carrier family 15 member 1 2 4
MIRT681017 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681065 PAQR7 progestin and adipoQ receptor family member 7 2 2
MIRT681209 ZNF638 zinc finger protein 638 2 2
MIRT681291 RFC2 replication factor C subunit 2 2 2
MIRT681366 BRI3BP BRI3 binding protein 2 2
MIRT681517 STAT2 signal transducer and activator of transcription 2 2 2
MIRT681549 ZNF738 zinc finger protein 738 2 2
MIRT681574 ABHD15 abhydrolase domain containing 15 2 2
MIRT681597 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT681806 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681912 SLC11A2 solute carrier family 11 member 2 2 2
MIRT681953 SLC19A3 solute carrier family 19 member 3 2 2
MIRT682037 AGXT2 alanine--glyoxylate aminotransferase 2 2 4
MIRT682111 ITGA3 integrin subunit alpha 3 2 4
MIRT682190 SLC38A7 solute carrier family 38 member 7 2 2
MIRT682247 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682394 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682554 EXOSC2 exosome component 2 2 2
MIRT682665 CASP8 caspase 8 2 2
MIRT683283 ZNF99 zinc finger protein 99 2 2
MIRT683359 SCARF1 scavenger receptor class F member 1 2 2
MIRT683453 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT683596 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT683661 ZNF695 zinc finger protein 695 2 2
MIRT683770 CPE carboxypeptidase E 2 2
MIRT683807 NOTO notochord homeobox 2 2
MIRT684462 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684525 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT684985 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685012 CXorf56 chromosome X open reading frame 56 2 2
MIRT685072 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685115 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685477 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685831 SLC27A1 solute carrier family 27 member 1 2 2
MIRT686032 UMPS uridine monophosphate synthetase 2 2
MIRT686559 TPM3 tropomyosin 3 2 2
MIRT687287 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT687309 OTUD7B OTU deubiquitinase 7B 2 2
MIRT688085 GLUL glutamate-ammonia ligase 2 2
MIRT688168 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT688584 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT688601 CYCS cytochrome c, somatic 2 2
MIRT688921 C11orf84 chromosome 11 open reading frame 84 2 2
MIRT689285 C5AR2 complement component 5a receptor 2 2 2
MIRT689622 AKAP6 A-kinase anchoring protein 6 2 2
MIRT690051 C6orf141 chromosome 6 open reading frame 141 2 2
MIRT690224 C5orf45 MRN complex interacting protein 2 2
MIRT690272 CAMLG calcium modulating ligand 2 2
MIRT690331 MRPS30 mitochondrial ribosomal protein S30 2 2
MIRT690480 ZNF33A zinc finger protein 33A 2 2
MIRT690526 ZNF566 zinc finger protein 566 2 2
MIRT690581 MICA MHC class I polypeptide-related sequence A 2 2
MIRT690675 RPF2 ribosome production factor 2 homolog 2 2
MIRT690790 ZNF589 zinc finger protein 589 2 2
MIRT690873 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT691142 HJURP Holliday junction recognition protein 2 2
MIRT691158 APOL6 apolipoprotein L6 2 2
MIRT691288 CENPM centromere protein M 2 2
MIRT691435 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT691749 IKBKG inhibitor of nuclear factor kappa B kinase subunit gamma 2 2
MIRT691833 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT691885 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT691947 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT692047 PAK1IP1 PAK1 interacting protein 1 2 2
MIRT692668 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692767 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT692859 ZSWIM1 zinc finger SWIM-type containing 1 2 2
MIRT693122 SCNM1 sodium channel modifier 1 2 2
MIRT693514 MOB3A MOB kinase activator 3A 2 2
MIRT693648 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT693688 MXRA7 matrix remodeling associated 7 2 2
MIRT694078 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT694163 SLC36A2 solute carrier family 36 member 2 2 2
MIRT694262 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT694506 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694556 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT694639 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT694710 CD300LG CD300 molecule like family member g 2 2
MIRT694753 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694896 ZNF417 zinc finger protein 417 2 2
MIRT695158 BTD biotinidase 2 2
MIRT695275 CD209 CD209 molecule 2 2
MIRT695434 TCF23 transcription factor 23 2 2
MIRT695817 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT696008 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT696345 SLC35D2 solute carrier family 35 member D2 2 2
MIRT696368 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT696533 C3 complement C3 2 2
MIRT696779 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT697075 PSMC4 proteasome 26S subunit, ATPase 4 2 2
MIRT697498 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT697630 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT697931 TXNDC16 thioredoxin domain containing 16 2 2
MIRT697966 TSPYL1 TSPY like 1 2 2
MIRT698237 TMEM216 transmembrane protein 216 2 2
MIRT698643 TES testin LIM domain protein 2 2
MIRT698661 TERF2 telomeric repeat binding factor 2 2 2
MIRT698974 SPAST spastin 2 2
MIRT699047 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699193 SLX4IP SLX4 interacting protein 2 2
MIRT699586 SIKE1 suppressor of IKBKE 1 2 2
MIRT699759 SEPHS1 selenophosphate synthetase 1 2 2
MIRT700350 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700402 RAB13 RAB13, member RAS oncogene family 2 2
MIRT700418 QDPR quinoid dihydropteridine reductase 2 2
MIRT700546 PTBP2 polypyrimidine tract binding protein 2 2 2
MIRT700774 PLA2G4A phospholipase A2 group IVA 2 2
MIRT700875 PER2 period circadian clock 2 2 2
MIRT700952 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT701077 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT701172 PACS2 phosphofurin acidic cluster sorting protein 2 2 2
MIRT701479 NEK9 NIMA related kinase 9 2 2
MIRT701661 MYH9 myosin heavy chain 9 2 2
MIRT701779 MSL2 MSL complex subunit 2 2 2
MIRT702137 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT702494 KIAA1328 KIAA1328 2 2
MIRT703058 GTPBP10 GTP binding protein 10 2 2
MIRT703224 GOLGA3 golgin A3 2 2
MIRT703620 FBXO45 F-box protein 45 2 2
MIRT703657 FAM60A SIN3-HDAC complex associated factor 2 2
MIRT703765 FAM118A family with sequence similarity 118 member A 2 2
MIRT703832 EVI5 ecotropic viral integration site 5 2 2
MIRT703862 ERN1 endoplasmic reticulum to nucleus signaling 1 2 2
MIRT704664 CLCC1 chloride channel CLIC like 1 2 2
MIRT704812 CDC73 cell division cycle 73 2 2
MIRT705608 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT705625 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 2
MIRT705682 ANKRD40 ankyrin repeat domain 40 2 2
MIRT705813 AKNA AT-hook transcription factor 2 2
MIRT706238 SYT15 synaptotagmin 15 2 2
MIRT706567 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT709657 DFFB DNA fragmentation factor subunit beta 2 2
MIRT710609 ZNF555 zinc finger protein 555 2 2
MIRT711717 IREB2 iron responsive element binding protein 2 2 2
MIRT714122 TMED9 transmembrane p24 trafficking protein 9 2 2
MIRT715204 FKTN fukutin 2 2
MIRT718260 ZDHHC8 zinc finger DHHC-type containing 8 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4419b Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Cisplatin + Decitabine resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-mir-4419b Androstenedione+Anastrozole sensitive cell line (MCF-7)

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