pre-miRNA Information
pre-miRNA hsa-mir-3911   
Genomic Coordinates chr9: 127690687 - 127690795
Description Homo sapiens miR-3911 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3911
Sequence 12| UGUGUGGAUCCUGGAGGAGGCA |33
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
431152 7 ClinVar
COSM3847691 15 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs943029638 2 dbSNP
rs780635543 3 dbSNP
rs371437556 6 dbSNP
rs1135401819 7 dbSNP
rs748706130 14 dbSNP
rs1403241180 15 dbSNP
rs779344153 17 dbSNP
rs755366929 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol WDFY1   
Synonyms FENS-1, WDF1, ZFYVE17
Description WD repeat and FYVE domain containing 1
Transcript NM_020830   
Expression
Putative miRNA Targets on WDFY1
3'UTR of WDFY1
(miRNA target sites are highlighted)
>WDFY1|NM_020830|3'UTR
   1 TCTGAGAGCTGGGCGGCGTCCACACCTAAGAACAGCAGCTCCACCAAATGAAGTCCCTCTCACGCAGCTCCACAGCGCTG
  81 TCTCGTGAATGGACAGTAGCCACTTACAAACAAATCAACATTTTTAAAAAGAAAATGTAAAGGTGTGTTTTGGGGCATTT
 161 GTGGAACTTACCCATGGGGACTAATATGGAAAAGGTCTGTCCATAGTGGTTCCCTGAAGACTGGAATTACTTCAGCAAAA
 241 CTTCCCCATGAACAGCTAATGTGTAGTGAAAGAATGAGCTAGCAAATGAGTTTTAGCGGGGACAAAAAATCAAACAAAAA
 321 AGTGAATGCTTAGAACCTTCTCAAAGCAGTCACAAGTACAGACACTTCACTTAGCCTAGGGGGCCTTCCAGGGTTCTTGT
 401 GGCTGTTGTCAGAGCAGGAGCTGGGGGAGGGAAGACTTGTTCTCTCTTTCTTGAGGGGTGGCATTAGGAACTTACGAAAC
 481 CAGAGACCTTTCCCTATGACTTGGCAGTATGTGAATATCCTCTACACTTAGTTATTGATAAACTTCTTAAAGAGATCTGT
 561 TATTTTCAGGTAGTGCCATAATCTGCACTTAGCATTGGCTTGCTTCAGTTGTTTCTCTTCCCAGCCAGTATGCCACAGGT
 641 GAACTTTCGGGGTTGTCATTAAGTAAGTTGTGAAATTTCTGTAATAACAAAGGCAGTCCGCATTCTTCCCTTTCCCCCAA
 721 ATTCCTAGGGCAAAACTTTTTTATGGTGCTGTTAACATGGGAGTCACACAAGCCGCCTGACTTTTTCTCATTGCCATTAG
 801 TAATGACTGATGGAAAACCCAGCCACCACTGTGATGCGAAATGATCAGTCTGTTGCCTGAAACAGCCCAGTCCTCTTAAC
 881 TGAAACAGCATTCTACTTCTTGTTCCAAGATGAGCCTCTGCAATATTCTGGCAATTTAATATACCCCCTACAAAAGCACT
 961 CCACAGCTTTTACACTATTTTGACTTTGAGTTATAACTAGTATTATTCATGTTTTCATAAAAAGAAGTTAGTGACCCAGA
1041 GCTATAATCATCCATCAAGTCTTCCACAATAATTCCCAACTCATAAATTGCTTTCCTAACAACTAGCAAAAGCTATTGTT
1121 CATAATGGCATTTCTAAAGCTTTTGGGCACTGTGTACCAGGATGAGGAAGAGAAGAAATGAGGAGCCTGTCTTTTAATAT
1201 TCCAGTATTTGTGTGTTTGATTTTTTTTGACAACAGTACATATATCTATTTCTCTAGGGATATGGAAGTAAGTGGAGAAG
1281 GGCCTACCTTTTTAAAGGACAAATATAAAAATAGCAACAGTATCTTTGCTAATCTTACTAATAGATATTGATTAAAAAAA
1361 AAAAACCTCAGTACTGCATCACTGTGTTGGGATCATACCAGGACAATAGGGTCATTCCATATGATAAAACTAAAGGACTA
1441 AATTTGTTTTATAATGATGTCTTAGAGGGACTGAAAGGTTTAAGGAGGCGATCAAACTAAAATGTCTTAATGGCTGTGTG
1521 ACACACGTAAGGAAAGGAAAGGGGGTCACGCACATCATGTACTGGAATGATCTGCATTAAACATAGACTTGTCTTCAGAA
1601 ATAAGACTGAAGGGTTTTGTTGTTCCTTAGAGTTTTCGTGTTACATCACCTAAAGAGATTTCTTTTAAAAACTTTCTAGA
1681 CTCTTTGCAAAATGTATATTACTAACATAGTTTGGAAGAAAAATTGAGTAGTGGTAAGTTTTGTTCAAGCACAATGTTGA
1761 ATGTTAAGCTTCCTGTATTAATTTTAGTTCAGTTAATGGTTCAGCCCATACAAAGGTGCTATCCTAGGGATTTTATGAAT
1841 TCCTGAAAGGAAAATAGAATATGATCAATTCCTTGCCCTGTGGAAGAGTGCAGAACTGTGGTTTTGTTTTCCTTTGACTT
1921 CTGTAAAATGTGACCGTTTGACATCTGTGGTAGATTGAACGGAATATCACAGCTGCTGAGTTTACTCCATAGCTTTCAAA
2001 CCTTTTTTATTTTAAGAAATTCTTGAAAAACCCTATGTTCCATGGGAACATAAAGTTATTATAGTGCCTCCTAAGGGGTT
2081 AATATAAATCAAGGAGGAAGTTTATATTTAAGGAAGAATTGGAGTGACGTATCTTAGAAAAGGAAAGGCTGATGTTTCCA
2161 TATAGCTTGCTCTCCACCAGGCCTATCATTTTTCTTTTTAGAGACAAACGTGACAGGCTAGTCTTGTCTCTCTCATATGC
2241 TAGGTAGCAAATGGGGTGATATTTTTATAGAAGTGGGCAAAAATTATTTTCTCAATTTTACTGAGTAGGCACAGAAGAAA
2321 AGTACAGATAGGCTGATGGTTATTGCCTTATTTTGACTGCATTTCTCTTAAATGGATCATTTAAATTAGTTCTTCAAGTA
2401 ACAGTTTACTGGTTGTTCCATTCCTGAATATGCAGGCTAATTTGTACAGATAGGGATTAAGGAATACAGACTATTAGAGA
2481 AGATCCTTATATTTACATCTAGTATATATGTGGTAAGGAAATGCCGATTCTTCATTATAAACAAGTTTTAAAATTGTTCT
2561 TTCTTAGTTCAAATGATAGCAATACCCCTATAGCATTAGGTAGAAACAAATTATTCATTACATCGTAAATCTCTTTACTA
2641 TGTCCTAGCTCTGTCCTGCTACCTAAAGGATATAAAGAAATACTATTGCTCTAGAATGTATTACTTTGTTCTCCCATGAA
2721 AGAATTCAGTTTGTTAGTACCTATATTTTTAAACTGGTGAAACTGACCCAAATATGTAATAAATACCATAGTAGCTCAGA
2801 CCCAAGGAGATATTTTTCTAAAATCAGTTTTCGTTAAAGTACTTCTACTTCCGTTATTGGATATGGTATCTCCTAAAGTG
2881 TAAAAAAAATCTGTTACTATATAGTGATAAACCATCTGCTCATCGTAAGTGTAAGGCTTAACAAATAAGTAATACATGCT
2961 ATATTTATTCAAGTGTCTATTGCTTAATTGTTAATTGTGAGCAGATTTATTGAATGCCTATTCTATTTTCTGCAGTTTAC
3041 AATACAATAACTCTTTGAGTAAGTTGAAGTTTAATTGTGCAACAAATTTGTATTAGAGTACAATTTAAAGTGTTTTTCTC
3121 TATAGCCTTTTTTGACTGGGGAAGCAAGGGGTAATGTTAATTAGTACACTTTGTTCTTGTACTAGCTATGTTTCTATAAG
3201 ATATGGTGCCCTGTGTATCCCAGAGATGCTAGAAAACTGTTCTTTGCTCCTATTTGTGGGTTCTGTTTTTGTGGGTTTTT
3281 TTTTTTGAGAAAATGTACACAATAAAACATTCCTTGCTTGTTACTGTGAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acggaggagGUCCUAGGUGUGu 5'
                   |:| :||||||| 
Target 5' agagctgggCGGCGTCCACACc 3'
5 - 26 149.00 -15.10
2
miRNA  3' acGGAGGAGG---UCCU-AGGUGUgu 5'
            || ||| |   || | ||||||  
Target 5' taCCCCCTACAAAAGCACTCCACAgc 3'
942 - 967 136.00 -14.00
3
miRNA  3' acGGAG-GAG-GUCCUAGGUGUgu 5'
            |||| | | || | ||||||  
Target 5' tcCCTCTCACGCA-GCTCCACAgc 3'
54 - 76 135.00 -16.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30466497 11 COSMIC
COSN30502787 14 COSMIC
COSN30608246 16 COSMIC
COSN30152113 50 COSMIC
COSN31527155 56 COSMIC
COSN30112172 64 COSMIC
COSN26678886 65 COSMIC
COSN31527421 73 COSMIC
COSN31505922 82 COSMIC
COSN30137081 85 COSMIC
COSN31516146 124 COSMIC
COSN27662507 206 COSMIC
COSN16913704 650 COSMIC
COSN26563765 765 COSMIC
COSN26576039 823 COSMIC
COSN31535981 865 COSMIC
COSN27194111 1353 COSMIC
COSN25586743 1730 COSMIC
COSN6171844 2129 COSMIC
COSN8986131 2129 COSMIC
COSN31568967 2194 COSMIC
COSN1828179 2275 COSMIC
COSN30539443 2335 COSMIC
COSN8608699 2375 COSMIC
COSN26715334 2384 COSMIC
COSN1828178 2419 COSMIC
COSN31607955 2499 COSMIC
COSN14496750 2733 COSMIC
COSN17983800 3242 COSMIC
COSN1234356 3275 COSMIC
COSN20097876 3275 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1254232998 2 dbSNP
rs1202987508 3 dbSNP
rs550955145 5 dbSNP
rs773614344 12 dbSNP
rs767713101 14 dbSNP
rs571111 15 dbSNP
rs774559467 16 dbSNP
rs1034871472 17 dbSNP
rs144641009 18 dbSNP
rs749418409 26 dbSNP
rs776402054 30 dbSNP
rs770951254 33 dbSNP
rs1474239627 42 dbSNP
rs866741934 56 dbSNP
rs548557683 63 dbSNP
rs886252897 64 dbSNP
rs373265589 67 dbSNP
rs1238861440 70 dbSNP
rs1376959941 71 dbSNP
rs573121870 76 dbSNP
rs777220834 77 dbSNP
rs1049343762 79 dbSNP
rs994941563 80 dbSNP
rs1384489442 83 dbSNP
rs900548187 84 dbSNP
rs994356749 85 dbSNP
rs1333847481 87 dbSNP
rs1352892144 92 dbSNP
rs901447480 107 dbSNP
rs1019226923 108 dbSNP
rs528505024 122 dbSNP
rs889543528 130 dbSNP
rs944701795 137 dbSNP
rs559380261 142 dbSNP
rs912174848 143 dbSNP
rs1377562284 147 dbSNP
rs1343474607 161 dbSNP
rs34823403 174 dbSNP
rs545895581 174 dbSNP
rs183783306 175 dbSNP
rs1305194856 177 dbSNP
rs936443696 179 dbSNP
rs915424039 180 dbSNP
rs1237648670 183 dbSNP
rs564322276 187 dbSNP
rs727030 190 dbSNP
rs1449986835 193 dbSNP
rs79540172 195 dbSNP
rs192022684 199 dbSNP
rs188239554 203 dbSNP
rs1188070983 204 dbSNP
rs1486518930 206 dbSNP
rs1283493612 219 dbSNP
rs1253725945 223 dbSNP
rs1450791560 230 dbSNP
rs992809172 236 dbSNP
rs1353826849 238 dbSNP
rs1300898346 240 dbSNP
rs979796044 245 dbSNP
rs1225982138 246 dbSNP
rs1361900084 248 dbSNP
rs572889001 253 dbSNP
rs971035737 261 dbSNP
rs1325213526 269 dbSNP
rs937377416 284 dbSNP
rs1284109719 286 dbSNP
rs927392053 297 dbSNP
rs1262267281 298 dbSNP
rs1357723314 300 dbSNP
rs1465127414 304 dbSNP
rs1004819567 309 dbSNP
rs1240233439 310 dbSNP
rs1475060147 311 dbSNP
rs950660514 316 dbSNP
rs1296611572 322 dbSNP
rs1427428302 324 dbSNP
rs1468427201 335 dbSNP
rs1399577328 336 dbSNP
rs1361258613 352 dbSNP
rs182758204 354 dbSNP
rs1316726119 355 dbSNP
rs1345087084 356 dbSNP
rs769097891 360 dbSNP
rs1437866552 361 dbSNP
rs1274909705 369 dbSNP
rs1346916941 384 dbSNP
rs995079324 384 dbSNP
rs1221156326 386 dbSNP
rs952846837 391 dbSNP
rs1413046970 399 dbSNP
rs1329459205 403 dbSNP
rs150978386 404 dbSNP
rs1227670827 406 dbSNP
rs1026205479 408 dbSNP
rs972905375 410 dbSNP
rs374999855 417 dbSNP
rs1281933235 420 dbSNP
rs1039082222 421 dbSNP
rs1222303487 424 dbSNP
rs1270968565 426 dbSNP
rs1476085585 431 dbSNP
rs1008877039 448 dbSNP
rs1412928678 462 dbSNP
rs890477111 466 dbSNP
rs576896206 472 dbSNP
rs1406451763 475 dbSNP
rs557505746 475 dbSNP
rs1192500729 476 dbSNP
rs190062596 477 dbSNP
rs889418279 489 dbSNP
rs1243487721 493 dbSNP
rs747380964 500 dbSNP
rs1350692104 518 dbSNP
rs199949059 522 dbSNP
rs143575504 526 dbSNP
rs902271313 529 dbSNP
rs1349601062 531 dbSNP
rs1228687203 535 dbSNP
rs113100557 543 dbSNP
rs1229348711 545 dbSNP
rs566355107 554 dbSNP
rs1276633706 555 dbSNP
rs1218250796 556 dbSNP
rs1341433827 557 dbSNP
rs1252693960 567 dbSNP
rs778806030 567 dbSNP
rs1439761105 568 dbSNP
rs1290834894 573 dbSNP
rs1434452108 576 dbSNP
rs1363440032 581 dbSNP
rs1473295071 584 dbSNP
rs866732949 585 dbSNP
rs552218870 592 dbSNP
rs1424628119 595 dbSNP
rs115114882 598 dbSNP
rs1370710436 608 dbSNP
rs1392633411 617 dbSNP
rs1326379926 626 dbSNP
rs1334827103 627 dbSNP
rs1462900244 628 dbSNP
rs1448435596 633 dbSNP
rs937949546 634 dbSNP
rs1421219602 641 dbSNP
rs114444291 648 dbSNP
rs550749669 649 dbSNP
rs584358 650 dbSNP
rs1194161808 654 dbSNP
rs1421266715 657 dbSNP
rs1443245474 658 dbSNP
rs1185776102 665 dbSNP
rs561979311 686 dbSNP
rs931376512 699 dbSNP
rs918695391 700 dbSNP
rs1189701516 709 dbSNP
rs1246733585 724 dbSNP
rs1463028702 728 dbSNP
rs753505514 729 dbSNP
rs1214876898 735 dbSNP
rs1470168252 736 dbSNP
rs754579043 736 dbSNP
rs542150628 746 dbSNP
rs1414734155 752 dbSNP
rs1338444481 755 dbSNP
rs572850576 756 dbSNP
rs1019750542 758 dbSNP
rs1198471284 761 dbSNP
rs1451649403 763 dbSNP
rs1298167986 773 dbSNP
rs1328148385 774 dbSNP
rs964496455 775 dbSNP
rs559372756 776 dbSNP
rs985639952 796 dbSNP
rs954340071 816 dbSNP
rs1308416945 824 dbSNP
rs1261503633 825 dbSNP
rs185358879 829 dbSNP
rs1000563058 833 dbSNP
rs576866440 837 dbSNP
rs867526077 838 dbSNP
rs1367019314 851 dbSNP
rs1275447085 852 dbSNP
rs890505291 860 dbSNP
rs1020755005 861 dbSNP
rs1398100686 868 dbSNP
rs760199641 869 dbSNP
rs1013418019 871 dbSNP
rs556818649 873 dbSNP
rs1403451387 885 dbSNP
rs1469052446 890 dbSNP
rs894091592 892 dbSNP
rs896285904 894 dbSNP
rs1054967508 895 dbSNP
rs1002503505 898 dbSNP
rs887730769 902 dbSNP
rs547461690 921 dbSNP
rs756822296 941 dbSNP
rs1048856985 944 dbSNP
rs1225445205 946 dbSNP
rs1432178829 947 dbSNP
rs1281559451 955 dbSNP
rs1323134327 957 dbSNP
rs55634772 964 dbSNP
rs1262922676 965 dbSNP
rs753237744 965 dbSNP
rs1195026778 966 dbSNP
rs918665908 968 dbSNP
rs1437260462 969 dbSNP
rs1200980652 973 dbSNP
rs574937120 985 dbSNP
rs1479929201 993 dbSNP
rs148900561 1003 dbSNP
rs1178525750 1010 dbSNP
rs1365378750 1012 dbSNP
rs1451537590 1017 dbSNP
rs1288159423 1019 dbSNP
rs12815 1027 dbSNP
rs1366140549 1029 dbSNP
rs1037046140 1035 dbSNP
rs116017607 1038 dbSNP
rs528837783 1044 dbSNP
rs985657442 1046 dbSNP
rs566066060 1047 dbSNP
rs552132662 1049 dbSNP
rs1315437845 1050 dbSNP
rs767178251 1054 dbSNP
rs538705898 1058 dbSNP
rs1374718286 1067 dbSNP
rs1308481645 1068 dbSNP
rs979503744 1072 dbSNP
rs1447355744 1076 dbSNP
rs1266211405 1077 dbSNP
rs1177491775 1082 dbSNP
rs1252249721 1087 dbSNP
rs1417034985 1115 dbSNP
rs796493600 1119 dbSNP
rs570126964 1122 dbSNP
rs368146452 1125 dbSNP
rs1017399596 1128 dbSNP
rs987225174 1130 dbSNP
rs1161736241 1132 dbSNP
rs1365111382 1139 dbSNP
rs1443031471 1150 dbSNP
rs1300793722 1158 dbSNP
rs954831713 1170 dbSNP
rs1359438241 1174 dbSNP
rs1371480084 1179 dbSNP
rs1391137200 1182 dbSNP
rs181049774 1182 dbSNP
rs562917026 1185 dbSNP
rs777864319 1187 dbSNP
rs960461727 1195 dbSNP
rs1288954093 1199 dbSNP
rs1358020247 1204 dbSNP
rs1204633821 1220 dbSNP
rs1252660794 1229 dbSNP
rs1033500219 1233 dbSNP
rs1178584372 1240 dbSNP
rs530686744 1242 dbSNP
rs868176907 1246 dbSNP
rs1032319004 1248 dbSNP
rs779829481 1250 dbSNP
rs1410552753 1259 dbSNP
rs1172658762 1260 dbSNP
rs887689361 1262 dbSNP
rs1461714697 1265 dbSNP
rs1258533829 1268 dbSNP
rs1385519963 1274 dbSNP
rs1213234914 1277 dbSNP
rs1450919555 1279 dbSNP
rs561889704 1286 dbSNP
rs1314903256 1297 dbSNP
rs1363308863 1304 dbSNP
rs1351623374 1308 dbSNP
rs373947038 1317 dbSNP
rs1049006537 1318 dbSNP
rs867490598 1321 dbSNP
rs1046641726 1334 dbSNP
rs949525581 1338 dbSNP
rs1462445482 1342 dbSNP
rs9795 1343 dbSNP
rs1047917333 1345 dbSNP
rs1475722476 1347 dbSNP
rs1395288519 1349 dbSNP
rs1355812447 1350 dbSNP
rs1188333667 1351 dbSNP
rs1314356557 1352 dbSNP
rs1397688212 1353 dbSNP
rs1417530803 1354 dbSNP
rs375545320 1354 dbSNP
rs1408590950 1361 dbSNP
rs1468528947 1365 dbSNP
rs1336530853 1366 dbSNP
rs1433573745 1366 dbSNP
rs1359354346 1371 dbSNP
rs1158800172 1375 dbSNP
rs1359171286 1386 dbSNP
rs1217502120 1391 dbSNP
rs1454885217 1392 dbSNP
rs1283475428 1394 dbSNP
rs678746 1395 dbSNP
rs1163250977 1398 dbSNP
rs1277710674 1402 dbSNP
rs1447498063 1405 dbSNP
rs1251502301 1410 dbSNP
rs912673945 1411 dbSNP
rs1240289734 1413 dbSNP
rs1050330737 1418 dbSNP
rs1485551077 1421 dbSNP
rs1200270298 1430 dbSNP
rs1431678041 1435 dbSNP
rs1479608362 1436 dbSNP
rs79738157 1442 dbSNP
rs1409263864 1448 dbSNP
rs1402815357 1457 dbSNP
rs1316789233 1459 dbSNP
rs925518053 1463 dbSNP
rs1345144479 1468 dbSNP
rs1418962185 1468 dbSNP
rs682250 1477 dbSNP
rs1487392711 1481 dbSNP
rs576767235 1489 dbSNP
rs74572973 1490 dbSNP
rs1351039884 1495 dbSNP
rs991853764 1497 dbSNP
rs750357214 1500 dbSNP
rs1225270188 1502 dbSNP
rs1282002311 1503 dbSNP
rs1486875868 1504 dbSNP
rs960427422 1512 dbSNP
rs543169769 1514 dbSNP
rs1270790737 1516 dbSNP
rs1335252585 1526 dbSNP
rs981006396 1527 dbSNP
rs1157227965 1528 dbSNP
rs1021059862 1529 dbSNP
rs1425897891 1529 dbSNP
rs1163648287 1531 dbSNP
rs988647851 1533 dbSNP
rs958117048 1536 dbSNP
rs1402557187 1538 dbSNP
rs1322400051 1540 dbSNP
rs1032762875 1541 dbSNP
rs951881946 1545 dbSNP
rs1376047530 1546 dbSNP
rs568179696 1546 dbSNP
rs189846435 1549 dbSNP
rs1013786869 1550 dbSNP
rs1357301749 1556 dbSNP
rs887292739 1558 dbSNP
rs1292311096 1569 dbSNP
rs1439814377 1570 dbSNP
rs1180072591 1573 dbSNP
rs1238011514 1574 dbSNP
rs1047199836 1576 dbSNP
rs1185891144 1578 dbSNP
rs993352752 1583 dbSNP
rs1461322706 1584 dbSNP
rs496471 1585 dbSNP
rs1015534182 1606 dbSNP
rs187596307 1630 dbSNP
rs572395960 1634 dbSNP
rs1867789 1637 dbSNP
rs1049868878 1638 dbSNP
rs932736272 1644 dbSNP
rs542113887 1645 dbSNP
rs147837911 1651 dbSNP
rs556584549 1659 dbSNP
rs1399191941 1665 dbSNP
rs943030441 1673 dbSNP
rs903981972 1677 dbSNP
rs1044301452 1684 dbSNP
rs1380538471 1695 dbSNP
rs945581426 1700 dbSNP
rs914181726 1707 dbSNP
rs536365684 1709 dbSNP
rs1270891786 1713 dbSNP
rs1341713876 1723 dbSNP
rs1265287802 1724 dbSNP
rs1051611077 1734 dbSNP
rs10498156 1746 dbSNP
rs190314748 1754 dbSNP
rs528343781 1755 dbSNP
rs1205991171 1802 dbSNP
rs59159706 1810 dbSNP
rs980509014 1811 dbSNP
rs951907648 1815 dbSNP
rs1186209780 1816 dbSNP
rs1373214795 1822 dbSNP
rs1476112276 1824 dbSNP
rs1027462477 1827 dbSNP
rs1399125809 1833 dbSNP
rs1470091667 1835 dbSNP
rs1317042883 1836 dbSNP
rs552198042 1842 dbSNP
rs1338508397 1850 dbSNP
rs61613189 1857 dbSNP
rs1403781661 1861 dbSNP
rs971902426 1862 dbSNP
rs776628094 1872 dbSNP
rs1018855871 1873 dbSNP
rs1328204651 1875 dbSNP
rs144538185 1876 dbSNP
rs1024957176 1888 dbSNP
rs891093981 1892 dbSNP
rs1440996978 1911 dbSNP
rs1395928147 1919 dbSNP
rs1028744954 1920 dbSNP
rs1483207000 1922 dbSNP
rs1464427217 1935 dbSNP
rs563159790 1936 dbSNP
rs756231835 1941 dbSNP
rs543433206 1960 dbSNP
rs903947496 1961 dbSNP
rs1043882935 1966 dbSNP
rs945568197 1970 dbSNP
rs1026236727 1972 dbSNP
rs184980950 1975 dbSNP
rs757098974 1983 dbSNP
rs1198324666 1986 dbSNP
rs10498155 1988 dbSNP
rs1254861303 2001 dbSNP
rs1387073958 2006 dbSNP
rs1380562431 2022 dbSNP
rs78695292 2026 dbSNP
rs541221583 2035 dbSNP
rs181227146 2042 dbSNP
rs1457168873 2049 dbSNP
rs1311918221 2050 dbSNP
rs1273372829 2054 dbSNP
rs1197182997 2058 dbSNP
rs926288149 2068 dbSNP
rs1349215401 2077 dbSNP
rs1342518619 2111 dbSNP
rs372879349 2119 dbSNP
rs1261906447 2127 dbSNP
rs567555858 2128 dbSNP
rs116752486 2129 dbSNP
rs188700403 2138 dbSNP
rs1159600826 2140 dbSNP
rs1365434489 2143 dbSNP
rs1417839233 2154 dbSNP
rs971866333 2160 dbSNP
rs1306308892 2162 dbSNP
rs961885361 2166 dbSNP
rs1366201305 2177 dbSNP
rs13022532 2178 dbSNP
rs1291954911 2181 dbSNP
rs1335552737 2185 dbSNP
rs140677006 2186 dbSNP
rs533756564 2189 dbSNP
rs567761025 2195 dbSNP
rs953436101 2199 dbSNP
rs1309671912 2205 dbSNP
rs1334500076 2208 dbSNP
rs1240140238 2209 dbSNP
rs775880249 2210 dbSNP
rs1028295993 2212 dbSNP
rs773802879 2216 dbSNP
rs1359459035 2220 dbSNP
rs554312037 2221 dbSNP
rs968157590 2225 dbSNP
rs1393490705 2230 dbSNP
rs1400400576 2232 dbSNP
rs1487976255 2234 dbSNP
rs1022421666 2237 dbSNP
rs1009664301 2238 dbSNP
rs1177546299 2241 dbSNP
rs534771453 2243 dbSNP
rs1437599112 2247 dbSNP
rs1177869649 2250 dbSNP
rs913778190 2262 dbSNP
rs1446481783 2271 dbSNP
rs1052734441 2272 dbSNP
rs1387405490 2274 dbSNP
rs1349497910 2282 dbSNP
rs565898425 2283 dbSNP
rs1396911542 2293 dbSNP
rs936507215 2295 dbSNP
rs1056667051 2297 dbSNP
rs1003771365 2301 dbSNP
rs1446528776 2313 dbSNP
rs1233378247 2319 dbSNP
rs1385664456 2326 dbSNP
rs905473407 2332 dbSNP
rs1320730652 2333 dbSNP
rs1440459310 2335 dbSNP
rs1044719092 2338 dbSNP
rs1255092784 2356 dbSNP
rs1456240910 2357 dbSNP
rs1197810470 2359 dbSNP
rs1243643203 2359 dbSNP
rs772447465 2367 dbSNP
rs552419742 2368 dbSNP
rs1211105063 2369 dbSNP
rs1413244440 2390 dbSNP
rs1349437365 2399 dbSNP
rs532284490 2401 dbSNP
rs1283179898 2402 dbSNP
rs1172733621 2404 dbSNP
rs1421791798 2413 dbSNP
rs183973894 2414 dbSNP
rs1337851180 2416 dbSNP
rs920347157 2430 dbSNP
rs549502124 2432 dbSNP
rs752362593 2434 dbSNP
rs767266243 2438 dbSNP
rs940444601 2439 dbSNP
rs1377736786 2441 dbSNP
rs1214666991 2447 dbSNP
rs147676029 2447 dbSNP
rs1315720364 2449 dbSNP
rs987279276 2453 dbSNP
rs953307958 2455 dbSNP
rs921884369 2468 dbSNP
rs975431244 2474 dbSNP
rs951758590 2475 dbSNP
rs968420855 2486 dbSNP
rs1462589527 2488 dbSNP
rs1022308935 2489 dbSNP
rs1047686 2502 dbSNP
rs1486208911 2506 dbSNP
rs1312525788 2508 dbSNP
rs759132504 2509 dbSNP
rs956790636 2521 dbSNP
rs1296494208 2523 dbSNP
rs150003489 2524 dbSNP
rs1018371937 2525 dbSNP
rs1004145422 2551 dbSNP
rs571128232 2556 dbSNP
rs1430780289 2565 dbSNP
rs1299550113 2566 dbSNP
rs1378969476 2567 dbSNP
rs139330227 2576 dbSNP
rs1399080424 2580 dbSNP
rs191393021 2582 dbSNP
rs1283528038 2585 dbSNP
rs1416834658 2587 dbSNP
rs1045759722 2591 dbSNP
rs995106123 2595 dbSNP
rs1277784662 2597 dbSNP
rs1486487831 2602 dbSNP
rs898793631 2616 dbSNP
rs997185081 2624 dbSNP
rs1036004130 2625 dbSNP
rs1261199732 2638 dbSNP
rs1215323842 2640 dbSNP
rs1200323363 2643 dbSNP
rs551372336 2644 dbSNP
rs1477220685 2647 dbSNP
rs150874825 2661 dbSNP
rs3738958 2666 dbSNP
rs187546555 2667 dbSNP
rs903701562 2672 dbSNP
rs1051586385 2681 dbSNP
rs141498502 2682 dbSNP
rs666438 2683 dbSNP
rs1303334217 2685 dbSNP
rs1292987847 2690 dbSNP
rs185752288 2697 dbSNP
rs918004681 2707 dbSNP
rs992193144 2713 dbSNP
rs979048524 2717 dbSNP
rs1276516341 2725 dbSNP
rs947344528 2728 dbSNP
rs1430153474 2729 dbSNP
rs193046666 2743 dbSNP
rs988169986 2755 dbSNP
rs1450135131 2763 dbSNP
rs1320230376 2770 dbSNP
rs34402844 2770 dbSNP
rs956760927 2771 dbSNP
rs1403472201 2772 dbSNP
rs534310907 2774 dbSNP
rs974369459 2778 dbSNP
rs1035144323 2786 dbSNP
rs1165455528 2788 dbSNP
rs868675083 2795 dbSNP
rs1233884864 2808 dbSNP
rs963257424 2810 dbSNP
rs982292770 2812 dbSNP
rs578164128 2813 dbSNP
rs1380254499 2819 dbSNP
rs1185534278 2823 dbSNP
rs1018403640 2828 dbSNP
rs1023806712 2833 dbSNP
rs1403306849 2836 dbSNP
rs188678138 2837 dbSNP
rs1475471218 2842 dbSNP
rs529512756 2845 dbSNP
rs1448737219 2850 dbSNP
rs995473158 2852 dbSNP
rs899437180 2853 dbSNP
rs538866796 2856 dbSNP
rs1246773430 2857 dbSNP
rs1286083238 2859 dbSNP
rs369938861 2860 dbSNP
rs748834036 2861 dbSNP
rs1273984987 2865 dbSNP
rs1459335505 2866 dbSNP
rs1197183430 2875 dbSNP
rs1238073867 2890 dbSNP
rs1214759177 2891 dbSNP
rs890196071 2901 dbSNP
rs997617969 2911 dbSNP
rs773738214 2913 dbSNP
rs1471526432 2922 dbSNP
rs550051872 2924 dbSNP
rs1031058699 2925 dbSNP
rs1466962819 2927 dbSNP
rs535803419 2934 dbSNP
rs1329106341 2945 dbSNP
rs1399439298 2946 dbSNP
rs1276576400 2958 dbSNP
rs1336093735 2965 dbSNP
rs1338712059 2967 dbSNP
rs1244182704 2970 dbSNP
rs1270953881 2971 dbSNP
rs1000798112 2973 dbSNP
rs4674830 2973 dbSNP
rs931753971 2979 dbSNP
rs375381520 2990 dbSNP
rs1362764706 2994 dbSNP
rs372043678 2996 dbSNP
rs1324884525 2997 dbSNP
rs1044958827 3000 dbSNP
rs1254702211 3009 dbSNP
rs777416804 3018 dbSNP
rs1042910053 3020 dbSNP
rs947275087 3023 dbSNP
rs1056533035 3025 dbSNP
rs1326462329 3028 dbSNP
rs1422566918 3043 dbSNP
rs930026980 3047 dbSNP
rs1174196869 3050 dbSNP
rs1400024048 3052 dbSNP
rs1395499110 3055 dbSNP
rs3187727 3056 dbSNP
rs1397790573 3057 dbSNP
rs1398457275 3058 dbSNP
rs988140163 3062 dbSNP
rs1169330290 3067 dbSNP
rs935350859 3068 dbSNP
rs974446571 3074 dbSNP
rs1254737316 3076 dbSNP
rs1410120937 3085 dbSNP
rs1421194710 3087 dbSNP
rs1199374258 3089 dbSNP
rs1286190315 3090 dbSNP
rs1488985387 3098 dbSNP
rs115196207 3109 dbSNP
rs1262042419 3112 dbSNP
rs1433510596 3118 dbSNP
rs527361457 3133 dbSNP
rs1375842040 3140 dbSNP
rs985623718 3142 dbSNP
rs982563409 3146 dbSNP
rs1159326360 3150 dbSNP
rs1362466849 3151 dbSNP
rs955522053 3154 dbSNP
rs969515929 3162 dbSNP
rs1194760150 3163 dbSNP
rs1246626867 3173 dbSNP
rs748069263 3178 dbSNP
rs1470124548 3179 dbSNP
rs1299715098 3187 dbSNP
rs1024193731 3188 dbSNP
rs1204263231 3196 dbSNP
rs973624894 3203 dbSNP
rs1240303371 3204 dbSNP
rs1312110001 3224 dbSNP
rs1308361602 3239 dbSNP
rs1213861613 3242 dbSNP
rs956627332 3245 dbSNP
rs1488633488 3254 dbSNP
rs963579356 3256 dbSNP
rs1232235391 3263 dbSNP
rs1347196171 3265 dbSNP
rs1015169439 3266 dbSNP
rs1304101188 3269 dbSNP
rs1030670765 3270 dbSNP
rs1374396542 3271 dbSNP
rs200436716 3275 dbSNP
rs759762855 3275 dbSNP
rs1000938546 3276 dbSNP
rs3080024 3276 dbSNP
rs1459699456 3278 dbSNP
rs11449185 3287 dbSNP
rs1292003996 3287 dbSNP
rs370753462 3287 dbSNP
rs386392762 3287 dbSNP
rs386392763 3287 dbSNP
rs551682539 3287 dbSNP
rs550069982 3288 dbSNP
rs1442640492 3289 dbSNP
rs1307976512 3295 dbSNP
rs1355964105 3297 dbSNP
rs1173476985 3298 dbSNP
rs1321946947 3312 dbSNP
rs776849182 3313 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_ControlB_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acggaggagGUCCUAGGugugu 5'
                   |:| :|||     
Target 5' --agcugggCGGCGUCC----- 3'
1 - 15
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_ControlB_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control B
Location of target site ENST00000233055.4 | 3UTR | AGCUGGGCGGCGUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
BRCA -0.922 0.01 -0.900 0.02 5 Click to see details
THCA 0.907 0.05 0.800 0.1 4 Click to see details
LUSC 0.666 0.17 0.800 0.1 4 Click to see details
HNSC -0.421 0.17 -0.714 0.04 7 Click to see details
HNSC -0.421 0.17 -0.714 0.04 7 Click to see details
HNSC -0.421 0.17 -0.714 0.04 7 Click to see details
HNSC -0.421 0.17 -0.714 0.04 7 Click to see details
HNSC -0.421 0.17 -0.714 0.04 7 Click to see details
HNSC -0.421 0.17 -0.714 0.04 7 Click to see details
HNSC -0.421 0.17 -0.714 0.04 7 Click to see details
70 hsa-miR-3911 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT207399 MAT2A methionine adenosyltransferase 2A 2 6
MIRT284537 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT291946 TPM4 tropomyosin 4 2 2
MIRT293609 PVR poliovirus receptor 2 2
MIRT357688 PAIP2 poly(A) binding protein interacting protein 2 2 2
MIRT451607 MEIS3P1 Meis homeobox 3 pseudogene 1 2 2
MIRT452110 IFITM1 interferon induced transmembrane protein 1 2 2
MIRT457804 KLHL25 kelch like family member 25 2 2
MIRT462730 EFNB1 ephrin B1 2 2
MIRT463219 ZNF131 zinc finger protein 131 2 2
MIRT464141 VPS28 VPS28, ESCRT-I subunit 2 2
MIRT467582 SLC7A5 solute carrier family 7 member 5 2 6
MIRT470824 PLXND1 plexin D1 2 2
MIRT474230 LCLAT1 lysocardiolipin acyltransferase 1 2 2
MIRT478989 COLGALT1 collagen beta(1-O)galactosyltransferase 1 2 2
MIRT479462 CDK6 cyclin dependent kinase 6 2 2
MIRT483558 SYT2 synaptotagmin 2 2 2
MIRT484483 SLC9A1 solute carrier family 9 member A1 2 2
MIRT485224 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT490356 DPYSL5 dihydropyrimidinase like 5 2 4
MIRT493177 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 2
MIRT509802 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT511815 HDGF heparin binding growth factor 2 2
MIRT512254 ARPP19 cAMP regulated phosphoprotein 19 2 6
MIRT513025 GPT2 glutamic--pyruvic transaminase 2 2 2
MIRT519640 ZNF772 zinc finger protein 772 2 4
MIRT531178 SIGLEC12 sialic acid binding Ig like lectin 12 (gene/pseudogene) 2 2
MIRT537870 EDA2R ectodysplasin A2 receptor 2 2
MIRT551914 IGLON5 IgLON family member 5 2 2
MIRT558359 DMTF1 cyclin D binding myb like transcription factor 1 2 2
MIRT559771 URGCP-MRPS24 URGCP-MRPS24 readthrough 2 4
MIRT559813 ZNF83 zinc finger protein 83 2 2
MIRT561999 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT565754 SERTAD2 SERTA domain containing 2 2 2
MIRT569423 DCAF8 DDB1 and CUL4 associated factor 8 2 2
MIRT569845 RGS5 regulator of G protein signaling 5 2 2
MIRT606928 CDK15 cyclin dependent kinase 15 2 2
MIRT607616 TMEM130 transmembrane protein 130 2 4
MIRT607629 TRIOBP TRIO and F-actin binding protein 2 2
MIRT607885 SATB1 SATB homeobox 1 2 2
MIRT607942 SSX2 SSX family member 2 2 4
MIRT608017 CARNS1 carnosine synthase 1 2 4
MIRT608036 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT608063 SSX2B SSX family member 2B 2 4
MIRT608558 SBK1 SH3 domain binding kinase 1 2 6
MIRT608915 NCDN neurochondrin 2 6
MIRT615876 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 4
MIRT618023 ELFN1 extracellular leucine rich repeat and fibronectin type III domain containing 1 2 2
MIRT620505 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT628101 IL1RAPL1 interleukin 1 receptor accessory protein like 1 2 2
MIRT628700 ZNF548 zinc finger protein 548 2 2
MIRT630658 POU2F1 POU class 2 homeobox 1 2 2
MIRT643508 ZNF28 zinc finger protein 28 2 2
MIRT646379 SLC22A6 solute carrier family 22 member 6 2 2
MIRT660041 C15orf61 chromosome 15 open reading frame 61 2 2
MIRT687700 KRR1 KRR1, small subunit processome component homolog 2 2
MIRT688858 CAMKK2 calcium/calmodulin dependent protein kinase kinase 2 2 2
MIRT690443 REPIN1 replication initiator 1 2 2
MIRT690456 ZNF33A zinc finger protein 33A 2 2
MIRT693796 RHOG ras homolog family member G 2 2
MIRT694274 ZNF529 zinc finger protein 529 2 4
MIRT697697 WAC WW domain containing adaptor with coiled-coil 2 2
MIRT700242 RCC2 regulator of chromosome condensation 2 2 2
MIRT701836 MRPL37 mitochondrial ribosomal protein L37 2 2
MIRT704255 DHCR24 24-dehydrocholesterol reductase 2 2
MIRT707203 SDK2 sidekick cell adhesion molecule 2 2 2
MIRT710365 CREB5 cAMP responsive element binding protein 5 2 2
MIRT711943 WDFY1 WD repeat and FYVE domain containing 1 2 2
MIRT715496 MAZ MYC associated zinc finger protein 2 2
MIRT719250 MS4A1 membrane spanning 4-domains A1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3911 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3911 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-3911 Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-3911 Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-3911 Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-3911 Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-mir-3911 Vincristine 5978 approved resistant cell line (W1)
hsa-mir-3911 Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-miR-3911 Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)
hsa-miR-3911 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3911 Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-3911 Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-3911 Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-3911 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3911 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-3911 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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