pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SCOC   
Synonyms HRIHFB2072, SCOCO, UNC-69
Description short coiled-coil protein
Transcript NM_001153446   
Other Transcripts NM_001153484 , NM_001153552 , NM_001153585 , NM_001153635 , NM_001153663 , NM_001153690 , NM_032547   
Expression
Putative miRNA Targets on SCOC
3'UTR of SCOC
(miRNA target sites are highlighted)
>SCOC|NM_001153446|3'UTR
   1 GGGATTGACACCCTTCTGTTTTATGGAATTGCTGCTGATCATTTTTTCTTTAAAACTTGGATAGATTCCAAAAGTTACAG
  81 TACCTTTGTGGCTTCATTGAATATTTATGAAGATAATGTCAGATGTAGACAAAAATAACACAATAACAGGAGACTTCCAT
 161 AAGTTTGTGTATTATGTTAGTCTATGAAAACGTGCAAATGTATTGTAGAGACTTTATGATTAGAATTGCATATATTTATG
 241 AAACTTAAAGATGAATGTTTTATTGAATTTGTAGGTTTAGCACTGTCTTTTATTATAGGATTAGTAAGATATACAAGAAA
 321 ATAACCACCGTGTTGTGAAAAAGTGACCAAAATCATGTACTAAATGCACAGCTTTATGTACCCTGTCCACCATCTTGTGC
 401 CTCTTCTCCATTTGCCTCTTCCTTCCTATTTCCCTTCCGCTAAGGAAAAAAATTGGTGTCACATTTGTAAAAGTAATTTT
 481 AATAGTTAATCATCTCTGAGAGTAACCTGTATTTTAATTGTTGAAACTTAACCAAAATAAGATACTGTCTCAGCTAGGGC
 561 TTGTCATTTGTGTATTTAGTGTTAAGATAGGAATGCTAGTGTCTCTTTAATTAATTGGAAATAGATGGAGGCTAAAAATG
 641 AAGGTTTTTCTTTGAAACTGAATTAACTTGGGAATATTTGTTGTTAAAAACTTCTTTTTGCCCAAAATAACTCATTTTGT
 721 ATTATCTGAAAATATATAATTTCTGGTCATGTGTATGTTAAAATAGAAAATTTTGAGGAAAAATGGAAATAGGGTGGAAA
 801 AGTACTCGGTAAACAGTAGTAACCAAATATTTTCACTCCAGATTTGTGTTTTCTCTGGCACAGAGTAGATCTTTTGGGAA
 881 ATATATATGAAAGTGGATTAAGTTTGACTACCCTTATGTTAGCCACATCTGGATGAGAACAGTTACAAAGAGTTTGGTCT
 961 CTAAGTTGATTTGTACCCAGTGGGTCAACTTCTGCAAAATTCCGTAATGGTGTATTAGTATTAGAATAGTGAATAAAATG
1041 GGAAAGTTATACATGTATACTTATTATCTTGCTCAGTATTTTATCTCACTTGTTCTAGAATTTTCTGTAAACCCTGCTAC
1121 TGGGTTTGAAGAGTTTTAGTCATCCTTTAACAATTTTTAAAAATTTAGCTTCTAGATTCCATTTGGTAAGGAAATCAATA
1201 TTGGAAGTATTGCTAAAATCTTATAATATGAAAAGAGATCCACTAATGTAGCTTAAGGTTATTAGATTTGGGCTTTTAAT
1281 CATGGAATAATCTTATGTATTGGTGTAAGAGTTGATGAATGACTTTAGCTGTGTGAATATATAATAGTCAAACTGCAAAC
1361 ATTTTGCATCCCTTTTGTGACCTAATTTACAGACATTTAAATTGTGTTGCAGTTCTGCTTTGCCGTTTAATAAAAAGCTA
1441 TTTCAGAGGTTGAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aggACCUACGUUUAAAau 5'
             ||||| :||:|||  
Target 5' aagTGGAT-TAAGTTTga 3'
891 - 907 122.00 -6.40
2
miRNA  3' agGACCUACG---UUUAAAAu 5'
            ||||:| :   :|:|||| 
Target 5' taCTGGGTTTGAAGAGTTTTa 3'
1118 - 1138 120.00 -10.20
3
miRNA  3' agGACC----UACGUUUAAAAu 5'
            ||||    : |:|:|| || 
Target 5' ctCTGGCACAGAGTAGATCTTt 3'
853 - 874 102.00 -5.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30736241 6 COSMIC
COSN30513160 37 COSMIC
COSN18729151 57 COSMIC
COSN30113998 65 COSMIC
COSN30101495 76 COSMIC
COSN31569586 100 COSMIC
COSN30140684 192 COSMIC
COSN28186758 199 COSMIC
COSN31538688 229 COSMIC
COSN31544681 372 COSMIC
COSN26270323 435 COSMIC
COSN22590052 662 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs764771050 3 dbSNP
rs1017458012 5 dbSNP
rs1383196279 8 dbSNP
rs1239192810 9 dbSNP
rs377123717 10 dbSNP
rs762652833 12 dbSNP
rs1216482240 17 dbSNP
rs766013073 19 dbSNP
rs774866522 21 dbSNP
rs1185589603 22 dbSNP
rs370383394 27 dbSNP
rs1012590035 29 dbSNP
rs1022603417 41 dbSNP
rs748710122 42 dbSNP
rs1164608982 43 dbSNP
rs1473132027 49 dbSNP
rs358314 57 dbSNP
rs1190114877 59 dbSNP
rs1180242889 62 dbSNP
rs1000152837 71 dbSNP
rs1392351174 72 dbSNP
rs1421275438 75 dbSNP
rs1251665227 76 dbSNP
rs1212727916 94 dbSNP
rs1029630604 96 dbSNP
rs1272036433 97 dbSNP
rs1031569911 98 dbSNP
rs1466857260 101 dbSNP
rs181687143 102 dbSNP
rs977647900 103 dbSNP
rs1349284998 108 dbSNP
rs1258914068 116 dbSNP
rs1392037578 119 dbSNP
rs566802585 124 dbSNP
rs527665705 126 dbSNP
rs1407620272 127 dbSNP
rs1031858895 131 dbSNP
rs747715744 134 dbSNP
rs1316298568 142 dbSNP
rs768030961 144 dbSNP
rs1406061486 147 dbSNP
rs1384290784 154 dbSNP
rs546525432 159 dbSNP
rs1157391540 160 dbSNP
rs1344757900 161 dbSNP
rs957556562 167 dbSNP
rs1193388845 173 dbSNP
rs1452900783 173 dbSNP
rs990329626 185 dbSNP
rs1058648 191 dbSNP
rs1300118435 192 dbSNP
rs1380243220 193 dbSNP
rs1245015441 196 dbSNP
rs1279445485 199 dbSNP
rs1231808125 205 dbSNP
rs574532022 218 dbSNP
rs1305931562 227 dbSNP
rs1437433114 231 dbSNP
rs1325972746 235 dbSNP
rs1358354113 241 dbSNP
rs1222069206 243 dbSNP
rs1361750122 245 dbSNP
rs1173489160 250 dbSNP
rs368997368 256 dbSNP
rs976584216 257 dbSNP
rs1433270757 258 dbSNP
rs141135672 266 dbSNP
rs1172840723 270 dbSNP
rs186076447 272 dbSNP
rs1239917178 275 dbSNP
rs1194709166 276 dbSNP
rs13110536 283 dbSNP
rs1256751042 285 dbSNP
rs948462165 285 dbSNP
rs1208585049 286 dbSNP
rs986104456 300 dbSNP
rs1464966872 304 dbSNP
rs1210152350 305 dbSNP
rs1280746833 309 dbSNP
rs535446810 309 dbSNP
rs111526871 312 dbSNP
rs13110725 314 dbSNP
rs1268581312 315 dbSNP
rs1183342756 319 dbSNP
rs541786209 321 dbSNP
rs1312857654 322 dbSNP
rs146944540 330 dbSNP
rs752216126 331 dbSNP
rs941908204 333 dbSNP
rs1407280041 338 dbSNP
rs756458739 355 dbSNP
rs1322762065 360 dbSNP
rs1057260374 361 dbSNP
rs1416500628 363 dbSNP
rs1185770962 368 dbSNP
rs895575793 375 dbSNP
rs1404145070 377 dbSNP
rs1452254558 381 dbSNP
rs568939827 386 dbSNP
rs1203576196 389 dbSNP
rs1435798846 398 dbSNP
rs1271187485 409 dbSNP
rs996903648 417 dbSNP
rs1318742232 418 dbSNP
rs1030096149 426 dbSNP
rs891105844 427 dbSNP
rs1357927596 429 dbSNP
rs998845801 433 dbSNP
rs879734616 435 dbSNP
rs1465792857 439 dbSNP
rs553618956 439 dbSNP
rs753866996 440 dbSNP
rs1162159758 446 dbSNP
rs1475869586 446 dbSNP
rs904213185 448 dbSNP
rs999852101 449 dbSNP
rs1176513277 451 dbSNP
rs1468431374 452 dbSNP
rs1234361807 464 dbSNP
rs1260758149 465 dbSNP
rs1322381467 475 dbSNP
rs1200746376 496 dbSNP
rs990729862 507 dbSNP
rs1458373102 517 dbSNP
rs1032020718 533 dbSNP
rs891688813 538 dbSNP
rs1211900908 544 dbSNP
rs1323534454 547 dbSNP
rs1444508962 565 dbSNP
rs970229428 571 dbSNP
rs1223691506 578 dbSNP
rs1371686517 579 dbSNP
rs981184708 585 dbSNP
rs1447143849 592 dbSNP
rs566815721 597 dbSNP
rs1323399427 599 dbSNP
rs928374558 600 dbSNP
rs1180229553 604 dbSNP
rs1158342003 607 dbSNP
rs1251769230 615 dbSNP
rs1409964309 616 dbSNP
rs928997015 626 dbSNP
rs998430900 632 dbSNP
rs1473228433 634 dbSNP
rs1252639343 650 dbSNP
rs1191927686 654 dbSNP
rs1489532470 656 dbSNP
rs983077592 659 dbSNP
rs1215792095 660 dbSNP
rs1029465426 665 dbSNP
rs909168100 672 dbSNP
rs953874504 673 dbSNP
rs941924345 675 dbSNP
rs1300837724 676 dbSNP
rs539199257 681 dbSNP
rs1367774158 687 dbSNP
rs986220554 692 dbSNP
rs1427968692 693 dbSNP
rs1017628306 695 dbSNP
rs963359364 706 dbSNP
rs1159134176 736 dbSNP
rs557831481 737 dbSNP
rs1393011986 749 dbSNP
rs921766014 759 dbSNP
rs367618041 763 dbSNP
rs1404025754 772 dbSNP
rs1435127077 779 dbSNP
rs973403917 803 dbSNP
rs183926598 808 dbSNP
rs1327977729 809 dbSNP
rs1351005095 820 dbSNP
rs1266015446 827 dbSNP
rs929539362 828 dbSNP
rs1051220444 843 dbSNP
rs1278625767 846 dbSNP
rs993479087 852 dbSNP
rs1235031247 857 dbSNP
rs1312423223 858 dbSNP
rs777591477 864 dbSNP
rs1411645304 869 dbSNP
rs879916199 874 dbSNP
rs917447022 885 dbSNP
rs138058511 886 dbSNP
rs948863313 896 dbSNP
rs1044202651 910 dbSNP
rs998888416 912 dbSNP
rs1304358362 918 dbSNP
rs1378433592 920 dbSNP
rs1169962505 928 dbSNP
rs1053071690 935 dbSNP
rs1257420803 936 dbSNP
rs904239207 938 dbSNP
rs1195085888 939 dbSNP
rs371715575 947 dbSNP
rs1011806489 953 dbSNP
rs1202549253 953 dbSNP
rs751457195 954 dbSNP
rs1194410194 956 dbSNP
rs1274437763 962 dbSNP
rs1052762679 977 dbSNP
rs1483662036 980 dbSNP
rs1185060662 983 dbSNP
rs1319433268 984 dbSNP
rs1266787086 990 dbSNP
rs1232664793 995 dbSNP
rs891718892 1001 dbSNP
rs1023567388 1004 dbSNP
rs998140658 1005 dbSNP
rs1029513731 1010 dbSNP
rs187203816 1011 dbSNP
rs1460702358 1018 dbSNP
rs1006647122 1021 dbSNP
rs763029871 1024 dbSNP
rs1371007961 1027 dbSNP
rs1464237747 1043 dbSNP
rs757156923 1051 dbSNP
rs143198242 1052 dbSNP
rs1460924366 1054 dbSNP
rs745650549 1056 dbSNP
rs150464626 1060 dbSNP
rs533572185 1061 dbSNP
rs974659822 1063 dbSNP
rs576172885 1065 dbSNP
rs1458807091 1070 dbSNP
rs1364353175 1076 dbSNP
rs1258242255 1078 dbSNP
rs190866957 1084 dbSNP
rs560620812 1086 dbSNP
rs1324302314 1090 dbSNP
rs1245401013 1096 dbSNP
rs779694528 1108 dbSNP
rs1334991947 1113 dbSNP
rs933194343 1114 dbSNP
rs917497831 1143 dbSNP
rs1379400032 1154 dbSNP
rs948873180 1159 dbSNP
rs1388637001 1171 dbSNP
rs980225571 1199 dbSNP
rs934692110 1201 dbSNP
rs1363640515 1204 dbSNP
rs925710455 1207 dbSNP
rs1343333101 1208 dbSNP
rs1360452453 1211 dbSNP
rs1238444415 1218 dbSNP
rs1192565890 1224 dbSNP
rs1466789869 1229 dbSNP
rs1207853441 1230 dbSNP
rs773656752 1240 dbSNP
rs1268804390 1244 dbSNP
rs1210431631 1247 dbSNP
rs1349885594 1259 dbSNP
rs1290253148 1265 dbSNP
rs1242089930 1270 dbSNP
rs1354089428 1274 dbSNP
rs1053126291 1278 dbSNP
rs1329482328 1280 dbSNP
rs1325591691 1283 dbSNP
rs1208155112 1284 dbSNP
rs935733307 1288 dbSNP
rs1296848705 1298 dbSNP
rs1210486423 1319 dbSNP
rs1381289316 1324 dbSNP
rs1172670482 1327 dbSNP
rs1053265428 1332 dbSNP
rs138314431 1341 dbSNP
rs1378919225 1354 dbSNP
rs866982163 1361 dbSNP
rs1445875949 1365 dbSNP
rs1260967440 1369 dbSNP
rs1390498714 1371 dbSNP
rs1279332237 1375 dbSNP
rs867648691 1392 dbSNP
rs1050977954 1403 dbSNP
rs35390201 1409 dbSNP
rs906106026 1418 dbSNP
rs1276766833 1424 dbSNP
rs1003078138 1425 dbSNP
rs548936020 1426 dbSNP
rs182687343 1431 dbSNP
rs1402365899 1437 dbSNP
rs889662707 1439 dbSNP
rs1349199494 1440 dbSNP
rs1361650060 1447 dbSNP
rs1006699385 1450 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_ControlB_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_032547 | 3UTR | UGUAAAAGUAAUUUUAAUAGUUAAUCAUCUCUGAGAGUAACCUGUAUUUUAAUUGUUGAAACUUAACCAAAAUAAGAUACU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_032547 | 3UTR | UUGUAAAAGUAAUUUUAAUAGUUAAUCAUCUCUGAGAGUAACCUGUAUUUUAAUUGUUGAAACUUAACCAAAAUAAGAUACU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_032547 | 3UTR | AAGUAAUUUUAAUAGUUAAUCAUCUCUGAGAGUAACCUGUAUUUUAAUUGUUGAAACUUAACCAAAAUAAGAUACU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_032547 | 3UTR | UAAAAGUAAUUUUAAUAGUUAAUCAUCUCUGAGAGUAACCUGUAUUUUAAUUGUUGAAACUUAACCAAAAUAAGAUACU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_032547 | 3UTR | UAAAAGUAAUUUUAAUAGUUAAUCAUCUCUGAGAGUAACCUGUAUUUUAAUUGUUGAAACUUAACCAAAAUAAGAUACU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_032547 | 3UTR | UAAAAGUAAUUUUAAUAGUUAAUCAUCUCUGAGAGUAACCUGUAUUUUAAUUGUUGAAACUUAACCAAAAUAAGAUACU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset Chi_ControlB_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control B
Location of target site ENST00000608372.1 | 3UTR | UUUUGAGGAAAAAUGGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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