pre-miRNA Information
pre-miRNA hsa-mir-3120   
Genomic Coordinates chr1: 172138808 - 172138888
Description Homo sapiens miR-3120 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3120-5p
Sequence 13| CCUGUCUGUGCCUGCUGUACA |33
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 19 1 + 172138838 26449202, 27587585 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN26637643 8 COSMIC
COSN31603497 11 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs750386761 8 dbSNP
rs760725207 9 dbSNP
rs766486759 10 dbSNP
rs754055278 12 dbSNP
rs755288536 19 dbSNP
rs754726014 21 dbSNP
Putative Targets

Gene Information
Gene Symbol RPF2   
Synonyms BXDC1, bA397G5.4
Description ribosome production factor 2 homolog
Transcript NM_032194   
Expression
Putative miRNA Targets on RPF2
3'UTR of RPF2
(miRNA target sites are highlighted)
>RPF2|NM_032194|3'UTR
   1 TGGAACTTAGCCAGCCACTACTGTTTCATTGTGTTCTACTTAAGAGAATTATCAAGCGTCAATCCATTCAGAGTTTCTTA
  81 TAAGATCTTATTATATATTTTTATAACATGATAATTTTACGATATATTATTATGAACAGTAATATACTAGTATTAAGTGT
 161 AAAGTAAGCCTTTTATTTGAGACATTACACCCTGGTGTGCCATTTTCTCTTGTGATATCCCCTGCCCTCCACAAATTCTT
 241 CTTTCTCATTGGGTGGATGGATGGGTGAGGAGGGATCTCCATAACCATTGGGATTTTTTTGAATTTCTGGCCTTAGCTAA
 321 AGAAAGCCACAGAAAGCCGGACCCGCAGGAGCTGTGTAAACAATCTCAGTATGAATTACCTGGAAAGTTAACCTCCTCTC
 401 CCAACATGGATCTACATTCTGATTTTTATTTTCTACTTTTATTTTGCCTGAAATCCTACTCGTTGACATTTGAGATTTTA
 481 AGCTTTGTGGCTGAAAATATATAGATCTCTGAGAGGGATGTCTGCTATCTGATTATTGATAAATTACACTACTGTTGATT
 561 GTTTTAAGAGACTCTACTACTAAGTAGAGCCCACCCCGCTTCTCTGAGACGAAACCTGTGTTTTTTGGTTGGTTTGTTTT
 641 TAAGAGATGGGGTCTTGTTCTGTCACCTAGGGTGGAGTGCAGTGGCACAATCACAGCTCACTGCAGCCCTGAACTCCTGG
 721 GCTCAAGTAATCCTCCTGCCTGAGCCTCTTACGTAGCTGGGATTACAGGCATGAGCCACTGAGCCCTACTTTTTTTTTTT
 801 AAAGCAATGAGGTCTTGCTGTGTTGCCCAGGCTGGACTCAAATTCCTGGGCTCAAGTGATCCTCCCACTTCACCTTCCTG
 881 AGCAGCCGGAACTACAGATGTTGGTCCACTGCACCTGGCAGAAAAGAAGTTTTGATAGGGGCAGAAATGAAAAAGGAGAA
 961 AACAGGTGAGTTTTAAGGTGCAGGGCACTTTAGGGTACTGGGTAGCCCTAGGTAGCTAAAGGTTGCATGAAGGCCCTGGG
1041 CGTTTGCAGATGGTGTAGAAGCCAGCCAAAGCCTAACTACTTGTTTTGAAAGTTTCTTGAAGACAGGCCTTGTGCCTAGG
1121 AAAACAGAAGCTTTCTTCTTCCTTCTACTAGTATTGCATACTTGTTTTTCTGGAATAGGGTGTTAAGTTCCTTGATTCAG
1201 TCCTTGACAAGGAATCTCCTTTATACAAGTGCCAGTAATGTTGTAAAGGTACAGACATACGCAAATCATAATTTGTTACA
1281 TGAAGTACCAGTGCTTTCTTTTTTGTTGTTTTTTGAGACAGAGTCTCGCTCTGTCGCTCAGGCTGGAGTGCAGTGGCGCG
1361 ATTTCAGTTCACTGCAACCTCCACCTCCCAGGTTCAAGCATTCTTCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGC
1441 ACCCACCACCACGCCTGGCTGATTTTTTGTAGAGACAGGGTTTCACTTCAATTCCATGTTAGAGAGCTCCGTGCCTGTGT
1521 ATACATGCCTTTATGTAAGCTTGCTCAGCTACAGATCAACAATGCTGGCACTAAGCAAAAGTTCGAGCCTCAGCTTTACC
1601 TTCTACCCTTTCCCTTCTCTTTTGAATCCATTCCTTAGCTTTCCCTAGTCCTCTCCGGATAGCTGTTACTCTCCTCTTGC
1681 CAGAAAAATGAAGGAGCTGGTATCATTTATACTTTTTGTTTGATTATACGTTTAACCAAAGACCATACAGTCTCGTACCT
1761 GAATCAGACATTTGCACTTTATATCTAAATGAGAAGAAGGGGCTCAGATAAGTCGTTTGCTGCCATCTGGAGGTAGATGG
1841 ACAATAGCTGAGAAGGGGAGCCATGAAAAGAACATCAGGAGTGATGGACGCATAGTCCTTCCCCAAAGCCTCGCTCATCA
1921 CTGGTAGGAGGCAAAGCAGTGGGTCCTCCTCACCAGCCGCTTACGGGACCCTGCCATGCCTGGACCCCTCTATCAGGAAG
2001 ACCTACCCCAGCACTACTGGAAAATCAGCCAATCTTAACCCAAAGATGGCCATGATTTCTGTATGTGAGACGTCTTAAGG
2081 GTGTTTTTGTTTGTTTTAATCAGCCCTCTTGTTTGAGATTTGGCAATACATTTCTGTTTTCTAGGTAATTTCTGTGTCTG
2161 ATGGTAGAGGATCTAATAAGTATTGGAATGCTTCCTATTTGCTGATAGAAGTACCAAATAGTATTATTGAAGTCTAACAA
2241 AGACTTTTTGTTGAGAACACCTTGTAGTGTTGTACTATCTGGAACTCTTGAGCTGCCATTTATATCACTTTTTGTGGAGA
2321 GCACATCTTGATTTTCAGTTGTCCTTACTTTAGAATACAACACACATAAATTGGAGACTATGTATTCATTTCAATGGAGG
2401 TGGTAAATTGCCTGTTTTAAGTTTTACTTAATGTTGGGTTTTGGTAGATGAGGAAAGCATTTTGGTTATTTGTTTTGTTT
2481 TAAATACCAAATTTCTTATATTTTTTCTGGAATATTAATACTATTACCAAGCTATTATTTCATGGAATTTGGGTTTCTTT
2561 TTTTTTGTTTTTTTAAAATTAAGTGCTGTTTGTTTTCTTGGTTATTGAACATAATCCAAAGTAGAGATGTTATTACTCAA
2641 TTCAAGAAAAGAAAGGGCTAATAAAACTTAACTTCAAGTCAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acAUGUCGUCCGUGUCUGUcc 5'
            |::|  |||:|||||||  
Target 5' gtTGTA-AAGGTACAGACAta 3'
1240 - 1259 142.00 -17.50
2
miRNA  3' acAUGUC-GUCCGUGUCUGUCc 5'
            || ||  || |||||| || 
Target 5' gcTAAAGAAAGCCACAGAAAGc 3'
316 - 337 131.00 -8.70
3
miRNA  3' acAUGUC-GUCCGU-------GUCUGUcc 5'
            ||||| |  |:|       ||||||  
Target 5' caTACAGTCTCGTACCTGAATCAGACAtt 3'
1744 - 1772 127.00 -9.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN28201772 9 COSMIC
COSN28755872 11 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs753984892 1 dbSNP
rs757332134 2 dbSNP
rs746641749 3 dbSNP
rs750665646 4 dbSNP
rs770520918 4 dbSNP
rs780508891 5 dbSNP
rs747316349 6 dbSNP
rs781764275 7 dbSNP
rs748602874 8 dbSNP
rs769446754 9 dbSNP
rs770464596 10 dbSNP
rs759245099 11 dbSNP
rs776032814 11 dbSNP
rs1197648306 15 dbSNP
rs370901999 16 dbSNP
rs775418739 17 dbSNP
rs1022399721 21 dbSNP
rs796239134 21 dbSNP
rs1044387 22 dbSNP
rs1044388 24 dbSNP
rs1324135208 26 dbSNP
rs750471844 29 dbSNP
rs1269245364 30 dbSNP
rs1031152618 32 dbSNP
rs758698420 33 dbSNP
rs759015128 37 dbSNP
rs1219455913 38 dbSNP
rs960943501 39 dbSNP
rs992404940 47 dbSNP
rs188461842 57 dbSNP
rs980230953 58 dbSNP
rs1044389 59 dbSNP
rs532316758 61 dbSNP
rs1285444506 63 dbSNP
rs1388245880 68 dbSNP
rs767631360 70 dbSNP
rs899824471 74 dbSNP
rs1297434620 80 dbSNP
rs1442811122 91 dbSNP
rs1047590216 92 dbSNP
rs1173632032 97 dbSNP
rs1468841554 102 dbSNP
rs1381798265 104 dbSNP
rs552403831 107 dbSNP
rs1159668248 108 dbSNP
rs944571127 109 dbSNP
rs1027417238 112 dbSNP
rs147058039 121 dbSNP
rs983299942 122 dbSNP
rs1459477361 127 dbSNP
rs1295816253 156 dbSNP
rs774882337 160 dbSNP
rs1461844788 162 dbSNP
rs1257940712 170 dbSNP
rs1237116867 172 dbSNP
rs537641746 176 dbSNP
rs1306010129 179 dbSNP
rs1044148217 185 dbSNP
rs960232480 187 dbSNP
rs1329538064 192 dbSNP
rs1334629551 195 dbSNP
rs1451221139 197 dbSNP
rs993069669 203 dbSNP
rs916129884 213 dbSNP
rs1406131553 219 dbSNP
rs903919753 223 dbSNP
rs948987202 224 dbSNP
rs1000058466 226 dbSNP
rs191536549 227 dbSNP
rs1160204994 236 dbSNP
rs1441943821 236 dbSNP
rs1251518785 243 dbSNP
rs373524862 244 dbSNP
rs980441647 249 dbSNP
rs1031121471 250 dbSNP
rs924955722 253 dbSNP
rs896667631 271 dbSNP
rs936423792 277 dbSNP
rs1023854892 280 dbSNP
rs979773585 290 dbSNP
rs1027770358 303 dbSNP
rs555097785 311 dbSNP
rs1052162334 319 dbSNP
rs1312695432 328 dbSNP
rs1246822592 339 dbSNP
rs138419581 340 dbSNP
rs183916421 345 dbSNP
rs576614022 346 dbSNP
rs397886707 348 dbSNP
rs1380030655 350 dbSNP
rs907668684 352 dbSNP
rs187106213 355 dbSNP
rs1421863918 358 dbSNP
rs61153470 362 dbSNP
rs975970920 369 dbSNP
rs1370770837 375 dbSNP
rs921860777 387 dbSNP
rs1191035093 393 dbSNP
rs1428013108 394 dbSNP
rs1262641661 395 dbSNP
rs1026972647 396 dbSNP
rs761579417 402 dbSNP
rs1004297757 407 dbSNP
rs76565923 410 dbSNP
rs1221552718 417 dbSNP
rs1356876691 418 dbSNP
rs1015718738 423 dbSNP
rs1167467076 434 dbSNP
rs397715841 436 dbSNP
rs60209136 436 dbSNP
rs71679115 437 dbSNP
rs1343318045 441 dbSNP
rs201298364 442 dbSNP
rs1405942322 461 dbSNP
rs935385787 462 dbSNP
rs960117989 463 dbSNP
rs559212692 466 dbSNP
rs1373690739 468 dbSNP
rs774402265 469 dbSNP
rs896629709 479 dbSNP
rs1268536735 488 dbSNP
rs1168704030 497 dbSNP
rs1452016509 500 dbSNP
rs970308707 502 dbSNP
rs1402714256 510 dbSNP
rs1447724112 521 dbSNP
rs759854900 522 dbSNP
rs979454681 524 dbSNP
rs1302493575 528 dbSNP
rs1376652056 545 dbSNP
rs1282302288 551 dbSNP
rs1437599640 555 dbSNP
rs1024247517 556 dbSNP
rs924956736 559 dbSNP
rs905439613 560 dbSNP
rs1401671139 562 dbSNP
rs957984880 569 dbSNP
rs1027286497 579 dbSNP
rs1216247062 580 dbSNP
rs1177474279 582 dbSNP
rs1479147183 584 dbSNP
rs559284372 598 dbSNP
rs767657618 599 dbSNP
rs987842563 601 dbSNP
rs1437091761 603 dbSNP
rs913620301 608 dbSNP
rs75831711 611 dbSNP
rs1040826551 612 dbSNP
rs1459625481 613 dbSNP
rs1262085789 621 dbSNP
rs1014697155 627 dbSNP
rs965816307 628 dbSNP
rs1278083051 629 dbSNP
rs1235405689 632 dbSNP
rs1426252212 633 dbSNP
rs760844967 636 dbSNP
rs1312162248 641 dbSNP
rs932566954 651 dbSNP
rs1450506770 653 dbSNP
rs1416754129 660 dbSNP
rs368819401 662 dbSNP
rs1048829874 663 dbSNP
rs1257478443 681 dbSNP
rs1477815278 691 dbSNP
rs1416325356 695 dbSNP
rs931910945 703 dbSNP
rs888443811 719 dbSNP
rs541343933 722 dbSNP
rs1425787826 726 dbSNP
rs3851221 738 dbSNP
rs935346481 739 dbSNP
rs374913238 753 dbSNP
rs1052413635 754 dbSNP
rs1241927639 762 dbSNP
rs917981776 766 dbSNP
rs949510952 768 dbSNP
rs1045226021 773 dbSNP
rs1204897608 779 dbSNP
rs1037035460 780 dbSNP
rs113875773 790 dbSNP
rs1244356620 790 dbSNP
rs397945985 790 dbSNP
rs895878568 792 dbSNP
rs1014362324 798 dbSNP
rs1357689644 801 dbSNP
rs1023122769 802 dbSNP
rs1450375579 803 dbSNP
rs1323721821 821 dbSNP
rs905365186 826 dbSNP
rs1317960432 839 dbSNP
rs1418829893 841 dbSNP
rs1360883502 842 dbSNP
rs1303278615 847 dbSNP
rs1339738423 851 dbSNP
rs1422602709 862 dbSNP
rs143989415 865 dbSNP
rs1181927958 873 dbSNP
rs1473522804 887 dbSNP
rs191261683 888 dbSNP
rs1033713741 889 dbSNP
rs1191977584 890 dbSNP
rs956299009 895 dbSNP
rs1288526596 896 dbSNP
rs1280021499 899 dbSNP
rs987728209 901 dbSNP
rs1220725660 904 dbSNP
rs995732466 904 dbSNP
rs754455090 912 dbSNP
rs1230077912 914 dbSNP
rs1337573490 915 dbSNP
rs1269701134 920 dbSNP
rs1049138960 921 dbSNP
rs1342620250 924 dbSNP
rs1340553557 932 dbSNP
rs1218182961 933 dbSNP
rs1299806361 934 dbSNP
rs1402937331 937 dbSNP
rs1349210112 949 dbSNP
rs1165449856 954 dbSNP
rs1276032414 955 dbSNP
rs1407045896 957 dbSNP
rs530150294 967 dbSNP
rs1004539744 975 dbSNP
rs184502850 979 dbSNP
rs1264966440 986 dbSNP
rs1281426344 987 dbSNP
rs965783562 992 dbSNP
rs545124488 993 dbSNP
rs1224373180 1002 dbSNP
rs1272302982 1003 dbSNP
rs1028793285 1006 dbSNP
rs1219403920 1006 dbSNP
rs1281673871 1007 dbSNP
rs1221435030 1012 dbSNP
rs1192083533 1018 dbSNP
rs1266007502 1024 dbSNP
rs1293919556 1030 dbSNP
rs976931319 1042 dbSNP
rs75844616 1043 dbSNP
rs3908911 1046 dbSNP
rs925178138 1067 dbSNP
rs750773052 1068 dbSNP
rs1173859014 1069 dbSNP
rs1432265185 1072 dbSNP
rs1426248455 1078 dbSNP
rs1435188261 1080 dbSNP
rs1479943702 1082 dbSNP
rs1238167217 1088 dbSNP
rs1199328319 1090 dbSNP
rs147310274 1092 dbSNP
rs1177070461 1093 dbSNP
rs190460044 1098 dbSNP
rs1417666221 1099 dbSNP
rs1203218122 1100 dbSNP
rs1299907656 1102 dbSNP
rs1313011049 1103 dbSNP
rs1301637071 1104 dbSNP
rs988098405 1108 dbSNP
rs917947555 1112 dbSNP
rs1361135232 1113 dbSNP
rs138897816 1123 dbSNP
rs1435124377 1126 dbSNP
rs1272632784 1127 dbSNP
rs1369121779 1134 dbSNP
rs909749686 1135 dbSNP
rs926786937 1137 dbSNP
rs1359382761 1143 dbSNP
rs1178676724 1148 dbSNP
rs931487759 1152 dbSNP
rs182219629 1158 dbSNP
rs1037004305 1160 dbSNP
rs1288749429 1170 dbSNP
rs1241291630 1171 dbSNP
rs371022111 1173 dbSNP
rs887341055 1174 dbSNP
rs1258046653 1181 dbSNP
rs115296898 1196 dbSNP
rs1014331238 1197 dbSNP
rs1036022630 1199 dbSNP
rs901518101 1200 dbSNP
rs1312190837 1213 dbSNP
rs1395007555 1214 dbSNP
rs185154744 1220 dbSNP
rs906026256 1223 dbSNP
rs1451221661 1226 dbSNP
rs373700377 1230 dbSNP
rs1191952433 1236 dbSNP
rs59695416 1238 dbSNP
rs778730654 1239 dbSNP
rs1437556115 1246 dbSNP
rs1160306089 1249 dbSNP
rs1186914305 1251 dbSNP
rs1424522699 1259 dbSNP
rs1258492395 1260 dbSNP
rs553827448 1261 dbSNP
rs376079976 1262 dbSNP
rs1262127688 1267 dbSNP
rs1321509237 1272 dbSNP
rs748121259 1273 dbSNP
rs1263667519 1281 dbSNP
rs74295741 1285 dbSNP
rs769456726 1291 dbSNP
rs1321756769 1292 dbSNP
rs539400457 1299 dbSNP
rs9400457 1300 dbSNP
rs917875461 1318 dbSNP
rs576027637 1321 dbSNP
rs772273877 1324 dbSNP
rs965053817 1328 dbSNP
rs976520345 1329 dbSNP
rs1028453594 1331 dbSNP
rs1168440552 1332 dbSNP
rs1477577747 1334 dbSNP
rs926689267 1336 dbSNP
rs544883378 1337 dbSNP
rs189018441 1338 dbSNP
rs1265043744 1340 dbSNP
rs909728280 1341 dbSNP
rs1209118495 1358 dbSNP
rs181693475 1359 dbSNP
rs149418822 1360 dbSNP
rs940222216 1361 dbSNP
rs185695566 1368 dbSNP
rs1278498710 1369 dbSNP
rs1214451834 1372 dbSNP
rs901485732 1374 dbSNP
rs1329669210 1376 dbSNP
rs1237795954 1377 dbSNP
rs1323334265 1379 dbSNP
rs1456654819 1380 dbSNP
rs1180756984 1382 dbSNP
rs950067031 1385 dbSNP
rs1233174302 1391 dbSNP
rs764090563 1396 dbSNP
rs117903329 1397 dbSNP
rs1465217244 1399 dbSNP
rs1424569509 1400 dbSNP
rs1173047502 1401 dbSNP
rs1415931520 1417 dbSNP
rs888857390 1419 dbSNP
rs905904699 1420 dbSNP
rs1197912981 1421 dbSNP
rs1405417301 1422 dbSNP
rs1269449080 1436 dbSNP
rs1196184183 1441 dbSNP
rs1169428161 1442 dbSNP
rs1258179507 1447 dbSNP
rs1397660599 1448 dbSNP
rs1448461633 1453 dbSNP
rs113591694 1454 dbSNP
rs545770600 1462 dbSNP
rs1055004753 1465 dbSNP
rs1032101401 1477 dbSNP
rs892302614 1478 dbSNP
rs1447792366 1480 dbSNP
rs1401066670 1488 dbSNP
rs1333465336 1490 dbSNP
rs1009414875 1492 dbSNP
rs1401850575 1492 dbSNP
rs1171770611 1502 dbSNP
rs764338034 1503 dbSNP
rs1010441717 1511 dbSNP
rs757114726 1512 dbSNP
rs562515991 1514 dbSNP
rs1233962921 1518 dbSNP
rs1257437183 1525 dbSNP
rs531517873 1527 dbSNP
rs1316147853 1528 dbSNP
rs1200714535 1534 dbSNP
rs1440328444 1536 dbSNP
rs1033726075 1541 dbSNP
rs1273996533 1550 dbSNP
rs1441605824 1552 dbSNP
rs1284356961 1555 dbSNP
rs548033931 1556 dbSNP
rs561780881 1560 dbSNP
rs1311551945 1561 dbSNP
rs1445984738 1563 dbSNP
rs984214576 1570 dbSNP
rs1416409872 1571 dbSNP
rs1376998033 1573 dbSNP
rs1156627736 1582 dbSNP
rs953898470 1585 dbSNP
rs908672999 1586 dbSNP
rs983914486 1590 dbSNP
rs1159914642 1601 dbSNP
rs1016760087 1608 dbSNP
rs1236421548 1611 dbSNP
rs961239627 1615 dbSNP
rs1443803924 1619 dbSNP
rs765691859 1620 dbSNP
rs976974793 1620 dbSNP
rs115701835 1625 dbSNP
rs1170888426 1630 dbSNP
rs1401116648 1633 dbSNP
rs1355035217 1644 dbSNP
rs369545270 1648 dbSNP
rs758703034 1651 dbSNP
rs570503183 1652 dbSNP
rs9400458 1653 dbSNP
rs980489483 1657 dbSNP
rs927331375 1658 dbSNP
rs1338718024 1660 dbSNP
rs1296108256 1661 dbSNP
rs1399225835 1665 dbSNP
rs936073251 1671 dbSNP
rs1342649334 1672 dbSNP
rs1403560950 1673 dbSNP
rs1053486160 1677 dbSNP
rs765999239 1685 dbSNP
rs375465373 1687 dbSNP
rs1054507859 1692 dbSNP
rs1009341406 1700 dbSNP
rs1421097515 1701 dbSNP
rs1193369847 1702 dbSNP
rs1278152064 1713 dbSNP
rs891953992 1717 dbSNP
rs1488846292 1721 dbSNP
rs1265835337 1726 dbSNP
rs1219942151 1730 dbSNP
rs148603510 1731 dbSNP
rs1024789524 1739 dbSNP
rs1040521945 1749 dbSNP
rs549816391 1750 dbSNP
rs996454304 1752 dbSNP
rs1316275471 1755 dbSNP
rs79935185 1756 dbSNP
rs570132628 1762 dbSNP
rs1005711593 1768 dbSNP
rs7773288 1770 dbSNP
rs574976303 1771 dbSNP
rs1434132533 1775 dbSNP
rs755818403 1776 dbSNP
rs961124711 1777 dbSNP
rs1323630819 1780 dbSNP
rs993964923 1786 dbSNP
rs1215760487 1791 dbSNP
rs1462606316 1792 dbSNP
rs1397638377 1796 dbSNP
rs1024165154 1797 dbSNP
rs1169468319 1798 dbSNP
rs971693778 1802 dbSNP
rs1477955522 1807 dbSNP
rs1422022447 1811 dbSNP
rs1189844041 1812 dbSNP
rs984183319 1815 dbSNP
rs534391937 1816 dbSNP
rs1215608644 1826 dbSNP
rs1456531954 1839 dbSNP
rs1257535761 1843 dbSNP
rs1199445592 1844 dbSNP
rs927282019 1845 dbSNP
rs961476036 1846 dbSNP
rs79839475 1848 dbSNP
rs1478504519 1851 dbSNP
rs976914182 1861 dbSNP
rs1443055876 1868 dbSNP
rs577290773 1879 dbSNP
rs559039642 1882 dbSNP
rs1465757482 1885 dbSNP
rs913277709 1886 dbSNP
rs954404360 1886 dbSNP
rs946153012 1890 dbSNP
rs1040490971 1891 dbSNP
rs923492107 1893 dbSNP
rs190410261 1902 dbSNP
rs1050739966 1913 dbSNP
rs936353861 1923 dbSNP
rs180703278 1924 dbSNP
rs1298097666 1926 dbSNP
rs562554064 1933 dbSNP
rs889442834 1943 dbSNP
rs1005185242 1945 dbSNP
rs1359225241 1947 dbSNP
rs1038044284 1952 dbSNP
rs748769119 1959 dbSNP
rs993933698 1960 dbSNP
rs1207721666 1961 dbSNP
rs913636618 1965 dbSNP
rs1279096381 1968 dbSNP
rs1236327263 1970 dbSNP
rs867583612 1972 dbSNP
rs1307890419 1973 dbSNP
rs1046207516 1976 dbSNP
rs1231257872 1977 dbSNP
rs576022337 1979 dbSNP
rs1276865322 1981 dbSNP
rs1001849143 1988 dbSNP
rs1446872113 1990 dbSNP
rs1360059171 1991 dbSNP
rs1348269071 1992 dbSNP
rs1239221407 1996 dbSNP
rs879430189 1997 dbSNP
rs1380290824 1999 dbSNP
rs1002493953 2007 dbSNP
rs1159310803 2008 dbSNP
rs541760968 2009 dbSNP
rs1283760869 2019 dbSNP
rs1254207755 2031 dbSNP
rs1034234713 2033 dbSNP
rs561997484 2043 dbSNP
rs1265973489 2055 dbSNP
rs1257880268 2059 dbSNP
rs1212839399 2065 dbSNP
rs1351401573 2072 dbSNP
rs888418033 2073 dbSNP
rs1239096068 2074 dbSNP
rs990086208 2078 dbSNP
rs1318153868 2082 dbSNP
rs1309979529 2084 dbSNP
rs913248290 2086 dbSNP
rs1227321266 2108 dbSNP
rs1200485738 2115 dbSNP
rs1379531911 2120 dbSNP
rs1395354832 2125 dbSNP
rs866223279 2131 dbSNP
rs1454955026 2136 dbSNP
rs1398597211 2141 dbSNP
rs1005543823 2142 dbSNP
rs777579247 2148 dbSNP
rs1299301716 2149 dbSNP
rs1455827311 2152 dbSNP
rs1408070687 2155 dbSNP
rs1366736640 2164 dbSNP
rs1164176482 2179 dbSNP
rs1424609339 2181 dbSNP
rs768206305 2182 dbSNP
rs1015640353 2184 dbSNP
rs967421347 2195 dbSNP
rs779376734 2198 dbSNP
rs923432759 2199 dbSNP
rs1263164496 2202 dbSNP
rs932204153 2203 dbSNP
rs1243508805 2208 dbSNP
rs1335054583 2212 dbSNP
rs146211586 2218 dbSNP
rs1216446778 2219 dbSNP
rs1340242017 2219 dbSNP
rs954254870 2224 dbSNP
rs986087140 2225 dbSNP
rs547590719 2226 dbSNP
rs909426820 2228 dbSNP
rs1293000758 2240 dbSNP
rs1458518968 2243 dbSNP
rs1396916976 2245 dbSNP
rs371362891 2245 dbSNP
rs540884861 2245 dbSNP
rs942280200 2259 dbSNP
rs374614274 2262 dbSNP
rs1038016080 2265 dbSNP
rs1306734342 2268 dbSNP
rs749057250 2271 dbSNP
rs1430228576 2278 dbSNP
rs929694008 2293 dbSNP
rs1045516721 2296 dbSNP
rs906953043 2297 dbSNP
rs139241167 2299 dbSNP
rs1034612992 2305 dbSNP
rs893024847 2315 dbSNP
rs1353614154 2318 dbSNP
rs1162676229 2319 dbSNP
rs913605371 2323 dbSNP
rs1196304525 2324 dbSNP
rs1316928137 2326 dbSNP
rs945094771 2328 dbSNP
rs1329832855 2348 dbSNP
rs1301229619 2356 dbSNP
rs1253230560 2359 dbSNP
rs1442323587 2364 dbSNP
rs1373223658 2365 dbSNP
rs1457084255 2370 dbSNP
rs1176413405 2371 dbSNP
rs1236664940 2373 dbSNP
rs1401375516 2379 dbSNP
rs1465234867 2379 dbSNP
rs758163410 2379 dbSNP
rs1011477022 2380 dbSNP
rs372539304 2382 dbSNP
rs1160408589 2397 dbSNP
rs1198028665 2404 dbSNP
rs1020222805 2411 dbSNP
rs553384011 2412 dbSNP
rs386704834 2413 dbSNP
rs78064710 2414 dbSNP
rs144045995 2415 dbSNP
rs1395478412 2426 dbSNP
rs1055398161 2435 dbSNP
rs1343258296 2448 dbSNP
rs1255793116 2449 dbSNP
rs535434134 2453 dbSNP
rs548635285 2458 dbSNP
rs1391806008 2459 dbSNP
rs376018141 2461 dbSNP
rs1446199630 2466 dbSNP
rs1331089389 2469 dbSNP
rs909386671 2469 dbSNP
rs1326834053 2473 dbSNP
rs942248908 2483 dbSNP
rs1394536231 2489 dbSNP
rs1311877710 2493 dbSNP
rs1399725264 2496 dbSNP
rs1172790884 2497 dbSNP
rs1036997907 2499 dbSNP
rs1156279528 2500 dbSNP
rs1232980049 2501 dbSNP
rs1438579378 2501 dbSNP
rs150971389 2531 dbSNP
rs1246332043 2532 dbSNP
rs1255827655 2533 dbSNP
rs918256023 2544 dbSNP
rs1273209832 2556 dbSNP
rs1240103115 2558 dbSNP
rs1284557277 2558 dbSNP
rs897158911 2558 dbSNP
rs929592592 2559 dbSNP
rs1281366390 2566 dbSNP
rs1242800872 2567 dbSNP
rs1312036255 2568 dbSNP
rs998247191 2568 dbSNP
rs534201714 2576 dbSNP
rs1045811254 2584 dbSNP
rs906925659 2587 dbSNP
rs937100249 2589 dbSNP
rs185968307 2599 dbSNP
rs1408002217 2601 dbSNP
rs1007038788 2607 dbSNP
rs1471602500 2608 dbSNP
rs1367585077 2610 dbSNP
rs1189058183 2614 dbSNP
rs1033636574 2620 dbSNP
rs892994803 2634 dbSNP
rs776810843 2635 dbSNP
rs1178182860 2637 dbSNP
rs1020193313 2639 dbSNP
rs1448091017 2652 dbSNP
rs1286427759 2655 dbSNP
rs1208200263 2657 dbSNP
rs1355877469 2663 dbSNP
rs1294175711 2665 dbSNP
rs10434875 2667 dbSNP
rs1357071015 2668 dbSNP
rs78862351 2677 dbSNP
rs1429858421 2682 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_ControlA_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acaugucguccgugUCUGUCc 5'
                        |||||| 
Target 5' --uguuguuuuuugAGACAG- 3'
1 - 18
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_ControlA_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control A
Location of target site ENST00000441448.2 | 3UTR | UGUUGUUUUUUGAGACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-3120-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT096972 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT442624 LOX lysyl oxidase 2 2
MIRT473438 MDM4 MDM4, p53 regulator 2 2
MIRT490011 KIFC2 kinesin family member C2 2 2
MIRT496449 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496752 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT497721 CYP1A1 cytochrome P450 family 1 subfamily A member 1 2 2
MIRT498287 PADI3 peptidyl arginine deiminase 3 2 2
MIRT503195 ACVR1B activin A receptor type 1B 2 4
MIRT504760 TEP1 telomerase associated protein 1 2 4
MIRT517810 UGDH UDP-glucose 6-dehydrogenase 2 6
MIRT519686 ZNF622 zinc finger protein 622 2 4
MIRT520263 URGCP upregulator of cell proliferation 2 2
MIRT523051 ICMT isoprenylcysteine carboxyl methyltransferase 2 2
MIRT525601 OLR1 oxidized low density lipoprotein receptor 1 2 4
MIRT526995 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT528699 TRAF3IP2 TRAF3 interacting protein 2 2 4
MIRT533142 WNT10A Wnt family member 10A 2 2
MIRT537618 ERI1 exoribonuclease 1 2 2
MIRT539707 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT539752 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT539808 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT539941 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT540424 FAM83F family with sequence similarity 83 member F 2 2
MIRT540509 CXCL10 C-X-C motif chemokine ligand 10 2 2
MIRT540720 GUF1 GUF1 homolog, GTPase 2 2
MIRT541630 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT542286 POLR3K RNA polymerase III subunit K 2 2
MIRT542456 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT542550 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT542771 PPAP2B phospholipid phosphatase 3 2 2
MIRT550085 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT551458 CARKD NAD(P)HX dehydratase 2 2
MIRT555622 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT569136 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT572328 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT574607 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT575583 Mcm8 minichromosome maintenance 8 homologous recombination repair factor 2 4
MIRT576125 Hrk harakiri, BCL2 interacting protein (contains only BH3 domain) 2 5
MIRT576657 Fam216a family with sequence similarity 216, member A 2 2
MIRT607222 ACSM2A acyl-CoA synthetase medium chain family member 2A 2 4
MIRT607292 CD300E CD300e molecule 2 6
MIRT607746 ANGPT4 angiopoietin 4 2 2
MIRT607905 SPRYD4 SPRY domain containing 4 2 2
MIRT608159 HRK harakiri, BCL2 interacting protein 2 7
MIRT608657 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT609115 ZNF703 zinc finger protein 703 2 6
MIRT610231 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT610870 NUDCD3 NudC domain containing 3 2 2
MIRT611217 MC2R melanocortin 2 receptor 2 2
MIRT614858 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT616966 LMX1A LIM homeobox transcription factor 1 alpha 2 2
MIRT617258 GLIPR1L2 GLI pathogenesis related 1 like 2 2 2
MIRT618009 SLC9A3R2 SLC9A3 regulator 2 2 2
MIRT619067 BSND barttin CLCNK type accessory beta subunit 2 4
MIRT619295 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT619348 GINM1 glycoprotein integral membrane 1 2 2
MIRT619362 CFHR5 complement factor H related 5 2 2
MIRT619541 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT619782 NRIP2 nuclear receptor interacting protein 2 2 2
MIRT619994 NPAP1 nuclear pore associated protein 1 2 2
MIRT621030 CDC14B cell division cycle 14B 2 2
MIRT622033 STAT5A signal transducer and activator of transcription 5A 2 2
MIRT622728 PITPNM3 PITPNM family member 3 2 2
MIRT623144 NAV2 neuron navigator 2 2 2
MIRT623600 IPO9 importin 9 2 2
MIRT624608 B3GALT5 beta-1,3-galactosyltransferase 5 2 2
MIRT624905 CTCFL CCCTC-binding factor like 2 2
MIRT625030 SPC24 SPC24, NDC80 kinetochore complex component 2 2
MIRT625688 MCM8 minichromosome maintenance 8 homologous recombination repair factor 2 5
MIRT626531 EMCN endomucin 2 2
MIRT627204 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT628033 LSAMP limbic system-associated membrane protein 2 2
MIRT628203 FREM2 FRAS1 related extracellular matrix protein 2 2 2
MIRT631012 LINS lines homolog 1 2 2
MIRT633195 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 2
MIRT633890 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT634023 MOB4 MOB family member 4, phocein 2 2
MIRT634416 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 2 2
MIRT636866 ARSE arylsulfatase E (chondrodysplasia punctata 1) 2 2
MIRT642527 ANKRD9 ankyrin repeat domain 9 2 2
MIRT645408 FAM110A family with sequence similarity 110 member A 2 2
MIRT645635 SYTL4 synaptotagmin like 4 2 2
MIRT646013 TNFAIP8L2 TNF alpha induced protein 8 like 2 2 2
MIRT646686 ASGR2 asialoglycoprotein receptor 2 2 2
MIRT652838 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT655156 PHF21B PHD finger protein 21B 2 2
MIRT658491 EXOC7 exocyst complex component 7 2 2
MIRT659398 CORO2A coronin 2A 2 2
MIRT666825 PRCP prolylcarboxypeptidase 2 2
MIRT666866 POU2F2 POU class 2 homeobox 2 2 2
MIRT668224 GABRA1 gamma-aminobutyric acid type A receptor alpha1 subunit 2 2
MIRT673288 PDE3A phosphodiesterase 3A 2 2
MIRT673878 KLF2 Kruppel like factor 2 2 2
MIRT681721 KCNE4 potassium voltage-gated channel subfamily E regulatory subunit 4 2 2
MIRT682406 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT684109 MCM10 minichromosome maintenance 10 replication initiation factor 2 2
MIRT684423 TUFT1 tuftelin 1 2 2
MIRT684684 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT686638 TMEM184C transmembrane protein 184C 2 2
MIRT689457 NXN nucleoredoxin 2 2
MIRT689627 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT690773 PLA2G2C phospholipase A2 group IIC 2 2
MIRT690822 SGSM2 small G protein signaling modulator 2 2 2
MIRT693669 MXRA7 matrix remodeling associated 7 2 2
MIRT695553 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT695872 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT698160 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT699933 RUFY2 RUN and FYVE domain containing 2 2 2
MIRT708639 UBE2W ubiquitin conjugating enzyme E2 W 2 2
MIRT710816 RAB11FIP4 RAB11 family interacting protein 4 2 2
MIRT711242 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT711542 MSH3 mutS homolog 3 2 2
MIRT711749 DTX1 deltex E3 ubiquitin ligase 1 2 2
MIRT712303 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT712922 RPF2 ribosome production factor 2 homolog 2 2
MIRT714027 SYDE2 synapse defective Rho GTPase homolog 2 2 2
MIRT714768 TERF1 telomeric repeat binding factor 1 2 2
MIRT714844 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 2 2
MIRT715223 NPVF neuropeptide VF precursor 2 2
MIRT716110 GMPS guanine monophosphate synthase 2 2
MIRT716174 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT716383 C6orf223 chromosome 6 open reading frame 223 2 2
MIRT716527 KSR2 kinase suppressor of ras 2 2 2
MIRT716962 P2RY6 pyrimidinergic receptor P2Y6 2 2
MIRT717605 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT717696 PTGS1 prostaglandin-endoperoxide synthase 1 2 2
MIRT721360 ENTHD1 ENTH domain containing 1 2 2
MIRT721381 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT721935 RASSF2 Ras association domain family member 2 2 2
MIRT722094 SUSD1 sushi domain containing 1 2 2
MIRT722837 C17orf102 chromosome 17 open reading frame 102 2 2
MIRT722990 TOR1A torsin family 1 member A 2 2
MIRT724174 ABCF2 ATP binding cassette subfamily F member 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3120-5p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-3120-5p Prednisone/Azathioprine/Methotrexate/Cyclophosphamide/Mycophenolate mofetil sensitive tissue (myasthenia gravis)
hsa-miR-3120-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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