pre-miRNA Information
pre-miRNA hsa-mir-4747   
Genomic Coordinates chr19: 4932687 - 4932740
Description Homo sapiens miR-4747 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4747-5p
Sequence 1| AGGGAAGGAGGCUUGGUCUUAG |22
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs560927363 4 dbSNP
rs1471226927 10 dbSNP
rs763137545 12 dbSNP
rs767337154 15 dbSNP
rs775298039 16 dbSNP
rs760472311 19 dbSNP
rs1207950315 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TMBIM4   
Synonyms CGI-119, GAAP, LFG4, S1R, ZPRO
Description transmembrane BAX inhibitor motif containing 4
Transcript NM_016056   
Expression
Putative miRNA Targets on TMBIM4
3'UTR of TMBIM4
(miRNA target sites are highlighted)
>TMBIM4|NM_016056|3'UTR
   1 TTAAAAGTATCTCAGCTCAACTGAAGAACAACAAAAAAAATTTAACGAGAAAAAAGGATTAAAGTAATTGGAAGCAGTAT
  81 ATAGAAACTGTTTCATTAAGTAATAAAGTTTGAAACAATGATTAAATACTGTTACAATCTTTATTTGTATCATATGTAAT
 161 TTTGAGAGCTTTAAAATCTTACTATTCTTTATGATACCTCATTTCTAAATCCTTGATTTAGGATCTCAGTTAAGAGCTAT
 241 CAAAATTCTATTAAAAATGCTTTTCTGGCTGGGCACAGTGGCTCACGCCTGTAATCCCACCACTTTGGGAGACCGAGGCA
 321 GGTGGATCACGAGGTCAAGAGGTTGAGACCATCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTA
 401 GCTGGATGTGGTGGCACACACCTGTAGTCCCAGCTAGTCAAGAGGCTGAGGCCAGAGAATCGCTTGAACCTGGGAGGTGG
 481 AGGTTGCATTGAGCCAAGATCACGCCACTGCATTCCAGCCTGGTGACAGAGCGAGACTCAGTCTCAAAAAAAAAAAAAAA
 561 ATTTTTCTTCCTAAATTAGCCACGCATAGCGGTTCGTTTGCAATTCAAAAATAATTTTATGAGTAGATAAGAATATCAGT
 641 TTACCGTTGTCTAGTGATTTTATCTAAATTTTCCCTGAATTATTAAGTAATATTGATTTGGCTTTGATTCTGAAGTAGTA
 721 GAGTCTTTACCATTATAAACTGTAAATCTCTTTTTGCTTAAAAGGAAAAAAATGTAAAAGATAAATTCCACAGAGAATTA
 801 TTCAGTATTACATTAAAATGTTAATGACTTTTTATTTTAAATTGTACTAACATTAAAAGTTGGCCTGAAAGTCAGATATT
 881 ATGACAAAATTTGACATTAATTGTTTTTAAAGTATAGATTTCATTTGAAATTATAGAATGGTAATGTGGTTAGAGGACAC
 961 CAAAGATACTGGGTCATCAGCCATTAAGTATATCTATTTCAAAATTAAAATATTTGGGAAGTATAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaUUCUGGUUCGGAGGAAGGGa 5'
            || |  || ::|:|||||: 
Target 5' aaAAAAAAAATTTTTCTTCCTa 3'
552 - 573 128.00 -8.30
2
miRNA  3' gaUUCUGGUUCG--GA-GGAAGGga 5'
            ||||:|| ||  || | ||||  
Target 5' ccAAGATCACGCCACTGCATTCCag 3'
494 - 518 118.00 -14.60
3
miRNA  3' gauuCUGGUUCGGA---GGAAGGGa 5'
              ||::   :||   ::||||| 
Target 5' tagtGATTTTATCTAAATTTTCCCt 3'
652 - 676 110.00 -10.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31610287 35 COSMIC
COSN30112294 37 COSMIC
COSN26998758 41 COSMIC
COSN28839743 41 COSMIC
COSN13413177 82 COSMIC
COSN20109792 117 COSMIC
COSN29541533 293 COSMIC
COSN20195234 562 COSMIC
COSN16590035 614 COSMIC
COSN5950119 1341 COSMIC
COSN24490406 1539 COSMIC
COSN29973020 1727 COSMIC
COSN1581306 1802 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs752145390 12 dbSNP
rs200897048 18 dbSNP
rs763142045 21 dbSNP
rs773403018 26 dbSNP
rs1466618924 29 dbSNP
rs1373000698 32 dbSNP
rs1192195352 33 dbSNP
rs1015522188 37 dbSNP
rs765232045 39 dbSNP
rs956311396 40 dbSNP
rs1289775339 41 dbSNP
rs759325116 41 dbSNP
rs774069265 41 dbSNP
rs1187716883 42 dbSNP
rs1441424076 43 dbSNP
rs1185629 46 dbSNP
rs746764006 47 dbSNP
rs1345187148 49 dbSNP
rs1467778418 56 dbSNP
rs904205884 82 dbSNP
rs556938633 85 dbSNP
rs1218911520 89 dbSNP
rs1017881272 90 dbSNP
rs1276463330 92 dbSNP
rs1460569368 93 dbSNP
rs1169837778 99 dbSNP
rs1009549333 100 dbSNP
rs537040924 109 dbSNP
rs1353644025 118 dbSNP
rs1323572416 119 dbSNP
rs1329230503 119 dbSNP
rs199993768 119 dbSNP
rs35450292 120 dbSNP
rs755620387 120 dbSNP
rs1387268313 123 dbSNP
rs954443473 124 dbSNP
rs1324142630 135 dbSNP
rs11176054 137 dbSNP
rs548289707 149 dbSNP
rs528139523 151 dbSNP
rs1211440674 152 dbSNP
rs1049706853 155 dbSNP
rs1489704911 162 dbSNP
rs1426815531 165 dbSNP
rs931935116 173 dbSNP
rs1427290349 174 dbSNP
rs1195348761 187 dbSNP
rs1424438435 201 dbSNP
rs898915254 216 dbSNP
rs538530142 218 dbSNP
rs1037390414 220 dbSNP
rs1002006016 225 dbSNP
rs973457202 243 dbSNP
rs745891395 250 dbSNP
rs1288105976 253 dbSNP
rs1382633806 254 dbSNP
rs905022945 256 dbSNP
rs1399326252 263 dbSNP
rs1046323067 264 dbSNP
rs949323865 273 dbSNP
rs1278200730 276 dbSNP
rs1459465228 281 dbSNP
rs1354345347 284 dbSNP
rs565788176 286 dbSNP
rs1258841726 296 dbSNP
rs1209497001 298 dbSNP
rs1310720404 301 dbSNP
rs552038245 314 dbSNP
rs774607939 315 dbSNP
rs960270867 320 dbSNP
rs1219527659 324 dbSNP
rs776687558 326 dbSNP
rs1263985899 327 dbSNP
rs1219964103 329 dbSNP
rs934640167 331 dbSNP
rs1375910836 334 dbSNP
rs1306782592 342 dbSNP
rs34948255 348 dbSNP
rs1448963493 359 dbSNP
rs1420241107 364 dbSNP
rs926042482 366 dbSNP
rs11833265 369 dbSNP
rs964902940 373 dbSNP
rs910704625 374 dbSNP
rs745870582 375 dbSNP
rs987776210 376 dbSNP
rs1298795705 377 dbSNP
rs1374298631 382 dbSNP
rs1412423371 383 dbSNP
rs955138001 406 dbSNP
rs563231104 414 dbSNP
rs1026528609 437 dbSNP
rs1306735178 450 dbSNP
rs1315569072 453 dbSNP
rs1242929459 461 dbSNP
rs1287415487 463 dbSNP
rs972161448 477 dbSNP
rs962988917 483 dbSNP
rs1015997855 486 dbSNP
rs1177124940 489 dbSNP
rs1001892909 503 dbSNP
rs113174307 504 dbSNP
rs1025219440 505 dbSNP
rs747232073 507 dbSNP
rs1239302575 510 dbSNP
rs1181725128 512 dbSNP
rs892377961 518 dbSNP
rs1482319048 519 dbSNP
rs1052338012 520 dbSNP
rs1049633082 522 dbSNP
rs1257792136 531 dbSNP
rs1449411480 532 dbSNP
rs934671624 533 dbSNP
rs1211150925 535 dbSNP
rs1347723808 540 dbSNP
rs1232749155 541 dbSNP
rs1353223129 544 dbSNP
rs80102817 545 dbSNP
rs76533092 547 dbSNP
rs904510237 550 dbSNP
rs1043186426 555 dbSNP
rs1242039470 560 dbSNP
rs530024460 561 dbSNP
rs1400523266 562 dbSNP
rs1459280594 562 dbSNP
rs764367680 562 dbSNP
rs910606748 562 dbSNP
rs898444343 565 dbSNP
rs1037688133 567 dbSNP
rs988048314 583 dbSNP
rs1380737140 585 dbSNP
rs907945412 585 dbSNP
rs778038158 590 dbSNP
rs1168755 591 dbSNP
rs560914774 595 dbSNP
rs202033751 596 dbSNP
rs927486129 598 dbSNP
rs371265949 607 dbSNP
rs550734092 624 dbSNP
rs541439714 626 dbSNP
rs1433734093 632 dbSNP
rs1399055291 634 dbSNP
rs968927230 641 dbSNP
rs572403324 642 dbSNP
rs1358225399 645 dbSNP
rs963040340 646 dbSNP
rs1199510009 647 dbSNP
rs1421913884 649 dbSNP
rs1381232768 658 dbSNP
rs1164727014 662 dbSNP
rs1247178932 663 dbSNP
rs1475056576 677 dbSNP
rs988433940 682 dbSNP
rs1402418206 685 dbSNP
rs1422562894 693 dbSNP
rs753370882 695 dbSNP
rs1015880057 697 dbSNP
rs1394173359 699 dbSNP
rs1403989281 716 dbSNP
rs1019747404 729 dbSNP
rs1007978677 731 dbSNP
rs1430659299 733 dbSNP
rs1268422023 736 dbSNP
rs1342523022 737 dbSNP
rs1219456064 742 dbSNP
rs1258404423 752 dbSNP
rs953985230 756 dbSNP
rs1333005758 765 dbSNP
rs1290350294 773 dbSNP
rs980521571 773 dbSNP
rs969115858 774 dbSNP
rs1261322992 790 dbSNP
rs1024685650 795 dbSNP
rs1488358479 802 dbSNP
rs1186738015 805 dbSNP
rs1415153337 811 dbSNP
rs995364023 812 dbSNP
rs1165305329 817 dbSNP
rs898413179 825 dbSNP
rs1414980842 826 dbSNP
rs1218986815 827 dbSNP
rs1036986923 828 dbSNP
rs1362507043 834 dbSNP
rs768403927 834 dbSNP
rs1013853334 847 dbSNP
rs1338869561 850 dbSNP
rs1264588882 852 dbSNP
rs892270303 857 dbSNP
rs1031364724 903 dbSNP
rs575206976 903 dbSNP
rs1221980313 907 dbSNP
rs10878384 908 dbSNP
rs1488592632 912 dbSNP
rs1209462522 917 dbSNP
rs1312894061 926 dbSNP
rs904562420 934 dbSNP
rs1443717971 935 dbSNP
rs1168754 941 dbSNP
rs186189044 947 dbSNP
rs927409202 950 dbSNP
rs796528860 951 dbSNP
rs1173017167 953 dbSNP
rs889219035 954 dbSNP
rs1397995004 972 dbSNP
rs868138345 974 dbSNP
rs866035979 975 dbSNP
rs1044521604 994 dbSNP
rs947593601 1010 dbSNP
rs1293274342 1014 dbSNP
rs1456903091 1016 dbSNP
rs1370692786 1017 dbSNP
rs1311208219 1018 dbSNP
rs145263844 1032 dbSNP
rs1233478114 1036 dbSNP
rs933516243 1069 dbSNP
rs181698637 1071 dbSNP
rs1200646325 1084 dbSNP
rs111316825 1086 dbSNP
rs986901938 1088 dbSNP
rs35848804 1096 dbSNP
rs1488726218 1097 dbSNP
rs1177099577 1100 dbSNP
rs1266457735 1106 dbSNP
rs1207838452 1107 dbSNP
rs1440845311 1110 dbSNP
rs1193625686 1112 dbSNP
rs953803572 1117 dbSNP
rs1467681534 1124 dbSNP
rs1028116730 1125 dbSNP
rs758092796 1134 dbSNP
rs1464271226 1154 dbSNP
rs962546784 1160 dbSNP
rs1377450975 1162 dbSNP
rs1440063061 1165 dbSNP
rs149997921 1173 dbSNP
rs942278034 1185 dbSNP
rs1015483132 1189 dbSNP
rs909432912 1192 dbSNP
rs980405400 1197 dbSNP
rs1200218413 1198 dbSNP
rs528707952 1200 dbSNP
rs917671969 1201 dbSNP
rs757747830 1207 dbSNP
rs559938341 1211 dbSNP
rs1435443475 1214 dbSNP
rs1030830788 1216 dbSNP
rs534612356 1217 dbSNP
rs1476961513 1230 dbSNP
rs1173164098 1262 dbSNP
rs1044494279 1282 dbSNP
rs1460694000 1290 dbSNP
rs565597038 1290 dbSNP
rs1018181068 1293 dbSNP
rs1392722838 1294 dbSNP
rs200491103 1304 dbSNP
rs35243693 1306 dbSNP
rs72167756 1306 dbSNP
rs777605381 1306 dbSNP
rs889112005 1311 dbSNP
rs893308210 1313 dbSNP
rs1327202949 1316 dbSNP
rs775719943 1335 dbSNP
rs1278492317 1337 dbSNP
rs1052307210 1347 dbSNP
rs1244454683 1349 dbSNP
rs1172866087 1350 dbSNP
rs1489713246 1352 dbSNP
rs1475902013 1354 dbSNP
rs1262551373 1357 dbSNP
rs1377269386 1366 dbSNP
rs532659064 1376 dbSNP
rs1196074952 1392 dbSNP
rs1424545903 1395 dbSNP
rs1475012015 1398 dbSNP
rs552287264 1407 dbSNP
rs1370043224 1408 dbSNP
rs1267734945 1409 dbSNP
rs1288269040 1411 dbSNP
rs1358042582 1413 dbSNP
rs1401254506 1414 dbSNP
rs1036495581 1428 dbSNP
rs942162015 1433 dbSNP
rs909485071 1435 dbSNP
rs532202235 1445 dbSNP
rs189419140 1446 dbSNP
rs986481107 1453 dbSNP
rs947751786 1455 dbSNP
rs917571699 1459 dbSNP
rs932339431 1468 dbSNP
rs1285978038 1475 dbSNP
rs1456366380 1476 dbSNP
rs1352180850 1482 dbSNP
rs1218812176 1488 dbSNP
rs1264004906 1491 dbSNP
rs1180401639 1500 dbSNP
rs1259508035 1502 dbSNP
rs1424221706 1508 dbSNP
rs139575428 1518 dbSNP
rs1378350152 1535 dbSNP
rs1421453668 1537 dbSNP
rs1158648720 1538 dbSNP
rs1343602507 1542 dbSNP
rs1374387383 1543 dbSNP
rs373647922 1546 dbSNP
rs920982741 1547 dbSNP
rs1253892053 1552 dbSNP
rs923646972 1553 dbSNP
rs973823374 1556 dbSNP
rs1243038157 1558 dbSNP
rs979278975 1563 dbSNP
rs967845049 1565 dbSNP
rs59245729 1568 dbSNP
rs1015441613 1569 dbSNP
rs1208245797 1573 dbSNP
rs1446744168 1587 dbSNP
rs1375320159 1591 dbSNP
rs1483712324 1593 dbSNP
rs1177713674 1595 dbSNP
rs779694074 1598 dbSNP
rs960636620 1606 dbSNP
rs529911672 1611 dbSNP
rs1179241592 1619 dbSNP
rs953544985 1620 dbSNP
rs34346717 1627 dbSNP
rs1412297195 1638 dbSNP
rs1030325460 1644 dbSNP
rs1333513302 1645 dbSNP
rs145997963 1646 dbSNP
rs1002866260 1654 dbSNP
rs1331091701 1656 dbSNP
rs1401498748 1679 dbSNP
rs547435548 1682 dbSNP
rs1449628865 1683 dbSNP
rs34557475 1684 dbSNP
rs1367558249 1689 dbSNP
rs1217502584 1695 dbSNP
rs1303514189 1701 dbSNP
rs34645929 1708 dbSNP
rs185092828 1709 dbSNP
rs1255900581 1711 dbSNP
rs34755483 1721 dbSNP
rs887934000 1722 dbSNP
rs934864562 1723 dbSNP
rs891370626 1727 dbSNP
rs1437816748 1730 dbSNP
rs1239957915 1731 dbSNP
rs1182356457 1734 dbSNP
rs1045313572 1737 dbSNP
rs142687861 1770 dbSNP
rs115441226 1775 dbSNP
rs1398522600 1782 dbSNP
rs920951564 1785 dbSNP
rs1038099585 1786 dbSNP
rs1349748813 1786 dbSNP
rs917606793 1788 dbSNP
rs1434948432 1789 dbSNP
rs1281574234 1791 dbSNP
rs139392179 1801 dbSNP
rs180674804 1804 dbSNP
rs923698914 1806 dbSNP
rs1276586737 1808 dbSNP
rs960854507 1814 dbSNP
rs1218960608 1815 dbSNP
rs1288886377 1815 dbSNP
rs1449791066 1818 dbSNP
rs1312103239 1823 dbSNP
rs927869561 1829 dbSNP
rs980658829 1830 dbSNP
rs1425270847 1835 dbSNP
rs200307176 1836 dbSNP
rs189203506 1843 dbSNP
rs879028582 1847 dbSNP
rs1339964904 1849 dbSNP
rs1332244291 1852 dbSNP
rs1398046351 1853 dbSNP
rs1376280388 1854 dbSNP
rs1158217710 1855 dbSNP
rs534311286 1856 dbSNP
rs1417641415 1857 dbSNP
rs1381896450 1858 dbSNP
rs373417782 1863 dbSNP
rs1472414104 1864 dbSNP
rs59771071 1864 dbSNP
rs879056358 1864 dbSNP
rs1428174981 1865 dbSNP
rs1189017571 1866 dbSNP
rs1400912442 1867 dbSNP
rs1485827009 1867 dbSNP
rs1325518619 1868 dbSNP
rs1251964182 1869 dbSNP
rs1320920505 1869 dbSNP
rs1437022769 1870 dbSNP
rs1283367199 1871 dbSNP
rs1354057743 1872 dbSNP
rs1229931624 1873 dbSNP
rs1352930022 1873 dbSNP
rs1262035062 1874 dbSNP
rs1213919386 1875 dbSNP
rs1264707424 1877 dbSNP
rs1487527918 1879 dbSNP
rs1288534239 1880 dbSNP
rs1224871585 1881 dbSNP
rs1356222819 1882 dbSNP
rs1282559399 1883 dbSNP
rs1247106725 1884 dbSNP
rs1237238054 1888 dbSNP
rs1156929097 1889 dbSNP
rs1165392391 1889 dbSNP
rs1315491517 1889 dbSNP
rs1333805382 1889 dbSNP
rs1335831500 1889 dbSNP
rs1338960670 1889 dbSNP
rs1362600215 1889 dbSNP
rs1386350734 1889 dbSNP
rs1401484038 1889 dbSNP
rs1419639188 1889 dbSNP
rs1449898064 1889 dbSNP
rs1472036944 1889 dbSNP
rs370296260 1889 dbSNP
rs1172092929 1890 dbSNP
rs375649053 1890 dbSNP
rs1356100237 1891 dbSNP
rs1416391403 1891 dbSNP
rs1399341036 1892 dbSNP
rs1444446551 1893 dbSNP
rs373440455 1894 dbSNP
rs1398330721 1895 dbSNP
rs1362275722 1902 dbSNP
rs1389306532 1912 dbSNP
rs1318693174 1919 dbSNP
rs1264120123 1920 dbSNP
rs1457632759 1928 dbSNP
rs1404763437 1935 dbSNP
rs1240521753 1948 dbSNP
rs1420221080 1949 dbSNP
rs1411514513 1958 dbSNP
rs1198174309 1971 dbSNP
rs1376064244 1973 dbSNP
rs1479119541 1986 dbSNP
rs1177478301 1987 dbSNP
rs1422614302 1989 dbSNP
rs1463828122 1996 dbSNP
rs868466881 2000 dbSNP
rs1397050644 2002 dbSNP
rs1386145523 2006 dbSNP
rs1321007384 2028 dbSNP
rs1332368918 2036 dbSNP
rs1223713354 2045 dbSNP
rs1164865682 2048 dbSNP
rs1217125068 2072 dbSNP
rs1253456276 2073 dbSNP
rs1475250993 2075 dbSNP
rs1481246255 2079 dbSNP
rs1422235856 2084 dbSNP
rs1191088061 2089 dbSNP
rs1478584796 2090 dbSNP
rs1200266670 2092 dbSNP
rs1262682127 2093 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B HITS-CLIP data was present in Chi_ControlA_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gauucugguucggagGAAGGga 5'
                         || ||  
Target 5' -cccagaugggguggCUGCC-- 3'
1 - 19
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000398033.4 | 3UTR | UUCCCAGACGGGGUGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset Chi_ControlA_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control A
Location of target site ENST00000398033.4 | 3UTR | CCCAGAUGGGGUGGCUGCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
215 hsa-miR-4747-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061689 BTG2 BTG anti-proliferation factor 2 2 2
MIRT062834 BCL7A BCL tumor suppressor 7A 2 2
MIRT079371 CCDC137 coiled-coil domain containing 137 2 2
MIRT081190 MIDN midnolin 2 4
MIRT081724 ZNF507 zinc finger protein 507 2 2
MIRT110565 ZMYND11 zinc finger MYND-type containing 11 2 2
MIRT133724 SKI SKI proto-oncogene 2 4
MIRT146689 MINK1 misshapen like kinase 1 2 2
MIRT150676 SLC27A1 solute carrier family 27 member 1 2 2
MIRT159196 NRBP1 nuclear receptor binding protein 1 2 2
MIRT180865 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT190659 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT196111 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT232390 SP1 Sp1 transcription factor 2 2
MIRT331070 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT338632 SHMT2 serine hydroxymethyltransferase 2 2 2
MIRT407441 CTDSP1 CTD small phosphatase 1 2 2
MIRT444276 NKX6-1 NK6 homeobox 1 2 2
MIRT444834 PDE6D phosphodiesterase 6D 2 2
MIRT445452 EXT1 exostosin glycosyltransferase 1 2 2
MIRT445644 NPY4R neuropeptide Y receptor Y4 2 2
MIRT446157 RPL12 ribosomal protein L12 2 2
MIRT446608 HIP1 huntingtin interacting protein 1 2 2
MIRT447108 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT449314 MRO maestro 2 2
MIRT450305 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT451245 ZNF444 zinc finger protein 444 2 2
MIRT451714 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT451908 ILK integrin linked kinase 2 2
MIRT452183 KIAA1456 KIAA1456 2 2
MIRT452610 REPIN1 replication initiator 1 2 2
MIRT453422 GLG1 golgi glycoprotein 1 2 2
MIRT454006 ALKBH5 alkB homolog 5, RNA demethylase 2 2
MIRT455072 ARHGAP39 Rho GTPase activating protein 39 2 2
MIRT455319 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT455357 KDM5C lysine demethylase 5C 2 2
MIRT455589 TAF12 TATA-box binding protein associated factor 12 2 2
MIRT455711 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT455860 TMEM254 transmembrane protein 254 2 2
MIRT455919 RAPGEF1 Rap guanine nucleotide exchange factor 1 2 2
MIRT455946 CYP4A22 cytochrome P450 family 4 subfamily A member 22 2 2
MIRT456935 LRP10 LDL receptor related protein 10 2 2
MIRT457223 AP3D1 adaptor related protein complex 3 delta 1 subunit 2 2
MIRT457431 NOL10 nucleolar protein 10 2 2
MIRT457470 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457907 ZNF212 zinc finger protein 212 2 2
MIRT458046 TSEN54 tRNA splicing endonuclease subunit 54 2 2
MIRT458073 RNLS renalase, FAD dependent amine oxidase 2 2
MIRT458234 NXPH3 neurexophilin 3 2 2
MIRT458307 TNFAIP8L3 TNF alpha induced protein 8 like 3 2 2
MIRT458378 ITM2C integral membrane protein 2C 2 2
MIRT458967 ZNF436 zinc finger protein 436 2 2
MIRT459099 CYP4A11 cytochrome P450 family 4 subfamily A member 11 2 2
MIRT459446 TMEM37 transmembrane protein 37 2 2
MIRT459671 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT460727 ASXL3 additional sex combs like 3, transcriptional regulator 2 2
MIRT460744 SRP14 signal recognition particle 14 2 2
MIRT461531 C14orf1 ergosterol biosynthesis 28 homolog 2 2
MIRT461752 DDX11 DEAD/H-box helicase 11 2 2
MIRT461837 F2RL3 F2R like thrombin or trypsin receptor 3 2 2
MIRT462019 RIF1 replication timing regulatory factor 1 2 2
MIRT462631 PHF5A PHD finger protein 5A 2 2
MIRT462772 ZNF8 zinc finger protein 8 2 2
MIRT463032 ZNF689 zinc finger protein 689 2 2
MIRT463886 WNT7B Wnt family member 7B 2 2
MIRT463995 WDTC1 WD and tetratricopeptide repeats 1 2 2
MIRT464371 URM1 ubiquitin related modifier 1 2 2
MIRT465342 TPM3 tropomyosin 3 2 4
MIRT465515 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465602 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT465697 TNPO2 transportin 2 2 10
MIRT466988 SSRP1 structure specific recognition protein 1 2 4
MIRT467630 SLC7A5 solute carrier family 7 member 5 2 2
MIRT468132 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT468322 SF3B3 splicing factor 3b subunit 3 2 2
MIRT468502 SESN2 sestrin 2 2 2
MIRT468881 RREB1 ras responsive element binding protein 1 2 2
MIRT469322 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT469562 RARA retinoic acid receptor alpha 2 2
MIRT469898 PTRF caveolae associated protein 1 2 2
MIRT470045 PTGFRN prostaglandin F2 receptor inhibitor 2 2
MIRT470068 PTGES2 prostaglandin E synthase 2 2 2
MIRT470238 PRRC2A proline rich coiled-coil 2A 2 2
MIRT470390 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT470500 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT470689 POLR2D RNA polymerase II subunit D 2 2
MIRT470704 POGK pogo transposable element derived with KRAB domain 2 2
MIRT471083 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472482 NACC2 NACC family member 2 2 2
MIRT473583 MAT2A methionine adenosyltransferase 2A 2 2
MIRT474554 KLHDC3 kelch domain containing 3 2 2
MIRT474651 KLF13 Kruppel like factor 13 2 2
MIRT474843 KHSRP KH-type splicing regulatory protein 2 2
MIRT474934 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475573 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT476045 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT476080 GRB2 growth factor receptor bound protein 2 2 2
MIRT476440 GBA2 glucosylceramidase beta 2 2 2
MIRT476764 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT478785 CRTC2 CREB regulated transcription coactivator 2 2 2
MIRT479287 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT479505 CDH6 cadherin 6 2 2
MIRT479732 CCND1 cyclin D1 2 6
MIRT480352 C5orf24 chromosome 5 open reading frame 24 2 2
MIRT480407 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT480859 BHLHB9 basic helix-loop-helix family member b9 2 2
MIRT481445 ARRB2 arrestin beta 2 2 2
MIRT481732 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT481824 AP2M1 adaptor related protein complex 2 mu 1 subunit 2 2
MIRT482566 ABHD2 abhydrolase domain containing 2 2 2
MIRT482607 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483144 SYCE1L synaptonemal complex central element protein 1 like 2 2
MIRT483214 APOA1 apolipoprotein A1 2 6
MIRT483878 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT483917 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 2 2
MIRT483939 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484420 SNX19 sorting nexin 19 2 2
MIRT484489 SLC9A1 solute carrier family 9 member A1 2 2
MIRT484612 SIX3 SIX homeobox 3 2 6
MIRT484705 RNF11 ring finger protein 11 2 2
MIRT485107 SHISA6 shisa family member 6 2 2
MIRT485354 MYO1C myosin IC 2 4
MIRT485609 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT487311 GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein 2 2
MIRT487417 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT487695 CDK14 cyclin dependent kinase 14 2 2
MIRT487791 GPR20 G protein-coupled receptor 20 2 4
MIRT488042 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT488058 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT488237 DNLZ DNL-type zinc finger 2 4
MIRT488764 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT489401 TUBB2A tubulin beta 2A class IIa 2 2
MIRT489777 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT490099 FN3K fructosamine 3 kinase 2 2
MIRT490290 ISL2 ISL LIM homeobox 2 2 2
MIRT490378 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT491329 GFER growth factor, augmenter of liver regeneration 2 2
MIRT491435 MSX2 msh homeobox 2 2 2
MIRT491769 ZNF385A zinc finger protein 385A 2 2
MIRT491922 WNK2 WNK lysine deficient protein kinase 2 2 2
MIRT491983 UNK unkempt family zinc finger 2 2
MIRT492228 SLC48A1 solute carrier family 48 member 1 2 2
MIRT492404 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT492767 PDGFB platelet derived growth factor subunit B 2 2
MIRT492966 NCS1 neuronal calcium sensor 1 2 2
MIRT493295 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT493650 HDLBP high density lipoprotein binding protein 2 2
MIRT493913 FAM127B retrotransposon Gag like 8A 2 4
MIRT495601 NKX2-5 NK2 homeobox 5 2 2
MIRT496875 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT498514 MYH14 myosin heavy chain 14 2 2
MIRT499178 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT502143 KIF5B kinesin family member 5B 2 8
MIRT502692 CSNK1G1 casein kinase 1 gamma 1 2 4
MIRT508460 HOXB6 homeobox B6 2 4
MIRT510430 ZNF207 zinc finger protein 207 2 6
MIRT511837 GPATCH8 G-patch domain containing 8 2 4
MIRT512368 CPM carboxypeptidase M 2 2
MIRT512506 BTBD19 BTB domain containing 19 2 2
MIRT513065 ANKRD45 ankyrin repeat domain 45 2 2
MIRT513267 SCUBE1 signal peptide, CUB domain and EGF like domain containing 1 2 4
MIRT513575 EVX1 even-skipped homeobox 1 2 2
MIRT515051 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515790 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT521657 PRKD3 protein kinase D3 2 2
MIRT522679 LUZP1 leucine zipper protein 1 2 6
MIRT528845 RAB32 RAB32, member RAS oncogene family 2 2
MIRT533569 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT543738 DHCR7 7-dehydrocholesterol reductase 2 2
MIRT544295 TSPYL1 TSPY like 1 2 2
MIRT544857 MYH2 myosin heavy chain 2 2 4
MIRT557323 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT560522 TMEM98 transmembrane protein 98 2 2
MIRT561565 SLC6A9 solute carrier family 6 member 9 2 2
MIRT562374 ERI2 ERI1 exoribonuclease family member 2 2 2
MIRT565780 SEMA6D semaphorin 6D 2 2
MIRT569548 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT569944 PRRT2 proline rich transmembrane protein 2 2 2
MIRT570016 COL1A2 collagen type I alpha 2 chain 2 2
MIRT572163 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT572322 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT573495 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT574139 MARVELD1 MARVEL domain containing 1 2 2
MIRT609449 CCDC149 coiled-coil domain containing 149 2 2
MIRT610619 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT623355 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT629854 ACOX1 acyl-CoA oxidase 1 2 2
MIRT630516 CDC73 cell division cycle 73 2 2
MIRT632535 PSMB2 proteasome subunit beta 2 2 2
MIRT633975 SLC35E2 solute carrier family 35 member E2 2 2
MIRT636408 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT641722 LTBR lymphotoxin beta receptor 2 2
MIRT642661 RGS6 regulator of G protein signaling 6 2 2
MIRT649649 MAST3 microtubule associated serine/threonine kinase 3 2 2
MIRT650367 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT651355 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT664840 HUS1 HUS1 checkpoint clamp component 2 2
MIRT667322 MYH9 myosin heavy chain 9 2 2
MIRT670680 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT674922 TRPM6 transient receptor potential cation channel subfamily M member 6 2 2
MIRT675919 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT676493 GJD3 gap junction protein delta 3 2 2
MIRT680162 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT688008 GSN gelsolin 2 2
MIRT688997 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT700337 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT701344 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT703519 FKBP15 FK506 binding protein 15 2 2
MIRT703901 EPT1 selenoprotein I 2 2
MIRT705565 ARHGEF18 Rho/Rac guanine nucleotide exchange factor 18 2 2
MIRT709709 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT713108 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT718426 ZNF85 zinc finger protein 85 2 2
MIRT719236 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719326 STAC SH3 and cysteine rich domain 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4747 Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4747-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-4747-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4747-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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