pre-miRNA Information
pre-miRNA hsa-mir-3192   
Genomic Coordinates chr20: 18470615 - 18470691
Description Homo sapiens miR-3192 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3192-5p
Sequence 10| UCUGGGAGGUUGUAGCAGUGGAA |32
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs906254403 3 dbSNP
rs554130490 4 dbSNP
rs773140898 6 dbSNP
rs376614009 11 dbSNP
rs899297329 12 dbSNP
rs1330418015 18 dbSNP
rs1402597660 21 dbSNP
rs995052311 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TMBIM4   
Synonyms CGI-119, GAAP, LFG4, S1R, ZPRO
Description transmembrane BAX inhibitor motif containing 4
Transcript NM_016056   
Expression
Putative miRNA Targets on TMBIM4
3'UTR of TMBIM4
(miRNA target sites are highlighted)
>TMBIM4|NM_016056|3'UTR
   1 TTAAAAGTATCTCAGCTCAACTGAAGAACAACAAAAAAAATTTAACGAGAAAAAAGGATTAAAGTAATTGGAAGCAGTAT
  81 ATAGAAACTGTTTCATTAAGTAATAAAGTTTGAAACAATGATTAAATACTGTTACAATCTTTATTTGTATCATATGTAAT
 161 TTTGAGAGCTTTAAAATCTTACTATTCTTTATGATACCTCATTTCTAAATCCTTGATTTAGGATCTCAGTTAAGAGCTAT
 241 CAAAATTCTATTAAAAATGCTTTTCTGGCTGGGCACAGTGGCTCACGCCTGTAATCCCACCACTTTGGGAGACCGAGGCA
 321 GGTGGATCACGAGGTCAAGAGGTTGAGACCATCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTA
 401 GCTGGATGTGGTGGCACACACCTGTAGTCCCAGCTAGTCAAGAGGCTGAGGCCAGAGAATCGCTTGAACCTGGGAGGTGG
 481 AGGTTGCATTGAGCCAAGATCACGCCACTGCATTCCAGCCTGGTGACAGAGCGAGACTCAGTCTCAAAAAAAAAAAAAAA
 561 ATTTTTCTTCCTAAATTAGCCACGCATAGCGGTTCGTTTGCAATTCAAAAATAATTTTATGAGTAGATAAGAATATCAGT
 641 TTACCGTTGTCTAGTGATTTTATCTAAATTTTCCCTGAATTATTAAGTAATATTGATTTGGCTTTGATTCTGAAGTAGTA
 721 GAGTCTTTACCATTATAAACTGTAAATCTCTTTTTGCTTAAAAGGAAAAAAATGTAAAAGATAAATTCCACAGAGAATTA
 801 TTCAGTATTACATTAAAATGTTAATGACTTTTTATTTTAAATTGTACTAACATTAAAAGTTGGCCTGAAAGTCAGATATT
 881 ATGACAAAATTTGACATTAATTGTTTTTAAAGTATAGATTTCATTTGAAATTATAGAATGGTAATGTGGTTAGAGGACAC
 961 CAAAGATACTGGGTCATCAGCCATTAAGTATATCTATTTCAAAATTAAAATATTTGGGAAGTATAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aagGUGACGAUGUUGGAGGGUCu 5'
             |||  ||::|:  |||||| 
Target 5' gcaCACACCTGTAG--TCCCAGc 3'
414 - 434 131.00 -14.50
2
miRNA  3' aaGGUGACGAUGUUGGAGGGUCu 5'
            :||| || || :| |:|||| 
Target 5' gaTCAC-GCCACTGCATTCCAGc 3'
498 - 519 120.00 -17.20
3
miRNA  3' aaGGUGACGAUGUUGGAGGGUcu 5'
            :|||  ||::||  |||||  
Target 5' gcTCACGCCTGTAA--TCCCAcc 3'
281 - 301 116.00 -13.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31610287 35 COSMIC
COSN30112294 37 COSMIC
COSN26998758 41 COSMIC
COSN28839743 41 COSMIC
COSN13413177 82 COSMIC
COSN20109792 117 COSMIC
COSN29541533 293 COSMIC
COSN20195234 562 COSMIC
COSN16590035 614 COSMIC
COSN5950119 1341 COSMIC
COSN24490406 1539 COSMIC
COSN29973020 1727 COSMIC
COSN1581306 1802 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs752145390 12 dbSNP
rs200897048 18 dbSNP
rs763142045 21 dbSNP
rs773403018 26 dbSNP
rs1466618924 29 dbSNP
rs1373000698 32 dbSNP
rs1192195352 33 dbSNP
rs1015522188 37 dbSNP
rs765232045 39 dbSNP
rs956311396 40 dbSNP
rs1289775339 41 dbSNP
rs759325116 41 dbSNP
rs774069265 41 dbSNP
rs1187716883 42 dbSNP
rs1441424076 43 dbSNP
rs1185629 46 dbSNP
rs746764006 47 dbSNP
rs1345187148 49 dbSNP
rs1467778418 56 dbSNP
rs904205884 82 dbSNP
rs556938633 85 dbSNP
rs1218911520 89 dbSNP
rs1017881272 90 dbSNP
rs1276463330 92 dbSNP
rs1460569368 93 dbSNP
rs1169837778 99 dbSNP
rs1009549333 100 dbSNP
rs537040924 109 dbSNP
rs1353644025 118 dbSNP
rs1323572416 119 dbSNP
rs1329230503 119 dbSNP
rs199993768 119 dbSNP
rs35450292 120 dbSNP
rs755620387 120 dbSNP
rs1387268313 123 dbSNP
rs954443473 124 dbSNP
rs1324142630 135 dbSNP
rs11176054 137 dbSNP
rs548289707 149 dbSNP
rs528139523 151 dbSNP
rs1211440674 152 dbSNP
rs1049706853 155 dbSNP
rs1489704911 162 dbSNP
rs1426815531 165 dbSNP
rs931935116 173 dbSNP
rs1427290349 174 dbSNP
rs1195348761 187 dbSNP
rs1424438435 201 dbSNP
rs898915254 216 dbSNP
rs538530142 218 dbSNP
rs1037390414 220 dbSNP
rs1002006016 225 dbSNP
rs973457202 243 dbSNP
rs745891395 250 dbSNP
rs1288105976 253 dbSNP
rs1382633806 254 dbSNP
rs905022945 256 dbSNP
rs1399326252 263 dbSNP
rs1046323067 264 dbSNP
rs949323865 273 dbSNP
rs1278200730 276 dbSNP
rs1459465228 281 dbSNP
rs1354345347 284 dbSNP
rs565788176 286 dbSNP
rs1258841726 296 dbSNP
rs1209497001 298 dbSNP
rs1310720404 301 dbSNP
rs552038245 314 dbSNP
rs774607939 315 dbSNP
rs960270867 320 dbSNP
rs1219527659 324 dbSNP
rs776687558 326 dbSNP
rs1263985899 327 dbSNP
rs1219964103 329 dbSNP
rs934640167 331 dbSNP
rs1375910836 334 dbSNP
rs1306782592 342 dbSNP
rs34948255 348 dbSNP
rs1448963493 359 dbSNP
rs1420241107 364 dbSNP
rs926042482 366 dbSNP
rs11833265 369 dbSNP
rs964902940 373 dbSNP
rs910704625 374 dbSNP
rs745870582 375 dbSNP
rs987776210 376 dbSNP
rs1298795705 377 dbSNP
rs1374298631 382 dbSNP
rs1412423371 383 dbSNP
rs955138001 406 dbSNP
rs563231104 414 dbSNP
rs1026528609 437 dbSNP
rs1306735178 450 dbSNP
rs1315569072 453 dbSNP
rs1242929459 461 dbSNP
rs1287415487 463 dbSNP
rs972161448 477 dbSNP
rs962988917 483 dbSNP
rs1015997855 486 dbSNP
rs1177124940 489 dbSNP
rs1001892909 503 dbSNP
rs113174307 504 dbSNP
rs1025219440 505 dbSNP
rs747232073 507 dbSNP
rs1239302575 510 dbSNP
rs1181725128 512 dbSNP
rs892377961 518 dbSNP
rs1482319048 519 dbSNP
rs1052338012 520 dbSNP
rs1049633082 522 dbSNP
rs1257792136 531 dbSNP
rs1449411480 532 dbSNP
rs934671624 533 dbSNP
rs1211150925 535 dbSNP
rs1347723808 540 dbSNP
rs1232749155 541 dbSNP
rs1353223129 544 dbSNP
rs80102817 545 dbSNP
rs76533092 547 dbSNP
rs904510237 550 dbSNP
rs1043186426 555 dbSNP
rs1242039470 560 dbSNP
rs530024460 561 dbSNP
rs1400523266 562 dbSNP
rs1459280594 562 dbSNP
rs764367680 562 dbSNP
rs910606748 562 dbSNP
rs898444343 565 dbSNP
rs1037688133 567 dbSNP
rs988048314 583 dbSNP
rs1380737140 585 dbSNP
rs907945412 585 dbSNP
rs778038158 590 dbSNP
rs1168755 591 dbSNP
rs560914774 595 dbSNP
rs202033751 596 dbSNP
rs927486129 598 dbSNP
rs371265949 607 dbSNP
rs550734092 624 dbSNP
rs541439714 626 dbSNP
rs1433734093 632 dbSNP
rs1399055291 634 dbSNP
rs968927230 641 dbSNP
rs572403324 642 dbSNP
rs1358225399 645 dbSNP
rs963040340 646 dbSNP
rs1199510009 647 dbSNP
rs1421913884 649 dbSNP
rs1381232768 658 dbSNP
rs1164727014 662 dbSNP
rs1247178932 663 dbSNP
rs1475056576 677 dbSNP
rs988433940 682 dbSNP
rs1402418206 685 dbSNP
rs1422562894 693 dbSNP
rs753370882 695 dbSNP
rs1015880057 697 dbSNP
rs1394173359 699 dbSNP
rs1403989281 716 dbSNP
rs1019747404 729 dbSNP
rs1007978677 731 dbSNP
rs1430659299 733 dbSNP
rs1268422023 736 dbSNP
rs1342523022 737 dbSNP
rs1219456064 742 dbSNP
rs1258404423 752 dbSNP
rs953985230 756 dbSNP
rs1333005758 765 dbSNP
rs1290350294 773 dbSNP
rs980521571 773 dbSNP
rs969115858 774 dbSNP
rs1261322992 790 dbSNP
rs1024685650 795 dbSNP
rs1488358479 802 dbSNP
rs1186738015 805 dbSNP
rs1415153337 811 dbSNP
rs995364023 812 dbSNP
rs1165305329 817 dbSNP
rs898413179 825 dbSNP
rs1414980842 826 dbSNP
rs1218986815 827 dbSNP
rs1036986923 828 dbSNP
rs1362507043 834 dbSNP
rs768403927 834 dbSNP
rs1013853334 847 dbSNP
rs1338869561 850 dbSNP
rs1264588882 852 dbSNP
rs892270303 857 dbSNP
rs1031364724 903 dbSNP
rs575206976 903 dbSNP
rs1221980313 907 dbSNP
rs10878384 908 dbSNP
rs1488592632 912 dbSNP
rs1209462522 917 dbSNP
rs1312894061 926 dbSNP
rs904562420 934 dbSNP
rs1443717971 935 dbSNP
rs1168754 941 dbSNP
rs186189044 947 dbSNP
rs927409202 950 dbSNP
rs796528860 951 dbSNP
rs1173017167 953 dbSNP
rs889219035 954 dbSNP
rs1397995004 972 dbSNP
rs868138345 974 dbSNP
rs866035979 975 dbSNP
rs1044521604 994 dbSNP
rs947593601 1010 dbSNP
rs1293274342 1014 dbSNP
rs1456903091 1016 dbSNP
rs1370692786 1017 dbSNP
rs1311208219 1018 dbSNP
rs145263844 1032 dbSNP
rs1233478114 1036 dbSNP
rs933516243 1069 dbSNP
rs181698637 1071 dbSNP
rs1200646325 1084 dbSNP
rs111316825 1086 dbSNP
rs986901938 1088 dbSNP
rs35848804 1096 dbSNP
rs1488726218 1097 dbSNP
rs1177099577 1100 dbSNP
rs1266457735 1106 dbSNP
rs1207838452 1107 dbSNP
rs1440845311 1110 dbSNP
rs1193625686 1112 dbSNP
rs953803572 1117 dbSNP
rs1467681534 1124 dbSNP
rs1028116730 1125 dbSNP
rs758092796 1134 dbSNP
rs1464271226 1154 dbSNP
rs962546784 1160 dbSNP
rs1377450975 1162 dbSNP
rs1440063061 1165 dbSNP
rs149997921 1173 dbSNP
rs942278034 1185 dbSNP
rs1015483132 1189 dbSNP
rs909432912 1192 dbSNP
rs980405400 1197 dbSNP
rs1200218413 1198 dbSNP
rs528707952 1200 dbSNP
rs917671969 1201 dbSNP
rs757747830 1207 dbSNP
rs559938341 1211 dbSNP
rs1435443475 1214 dbSNP
rs1030830788 1216 dbSNP
rs534612356 1217 dbSNP
rs1476961513 1230 dbSNP
rs1173164098 1262 dbSNP
rs1044494279 1282 dbSNP
rs1460694000 1290 dbSNP
rs565597038 1290 dbSNP
rs1018181068 1293 dbSNP
rs1392722838 1294 dbSNP
rs200491103 1304 dbSNP
rs35243693 1306 dbSNP
rs72167756 1306 dbSNP
rs777605381 1306 dbSNP
rs889112005 1311 dbSNP
rs893308210 1313 dbSNP
rs1327202949 1316 dbSNP
rs775719943 1335 dbSNP
rs1278492317 1337 dbSNP
rs1052307210 1347 dbSNP
rs1244454683 1349 dbSNP
rs1172866087 1350 dbSNP
rs1489713246 1352 dbSNP
rs1475902013 1354 dbSNP
rs1262551373 1357 dbSNP
rs1377269386 1366 dbSNP
rs532659064 1376 dbSNP
rs1196074952 1392 dbSNP
rs1424545903 1395 dbSNP
rs1475012015 1398 dbSNP
rs552287264 1407 dbSNP
rs1370043224 1408 dbSNP
rs1267734945 1409 dbSNP
rs1288269040 1411 dbSNP
rs1358042582 1413 dbSNP
rs1401254506 1414 dbSNP
rs1036495581 1428 dbSNP
rs942162015 1433 dbSNP
rs909485071 1435 dbSNP
rs532202235 1445 dbSNP
rs189419140 1446 dbSNP
rs986481107 1453 dbSNP
rs947751786 1455 dbSNP
rs917571699 1459 dbSNP
rs932339431 1468 dbSNP
rs1285978038 1475 dbSNP
rs1456366380 1476 dbSNP
rs1352180850 1482 dbSNP
rs1218812176 1488 dbSNP
rs1264004906 1491 dbSNP
rs1180401639 1500 dbSNP
rs1259508035 1502 dbSNP
rs1424221706 1508 dbSNP
rs139575428 1518 dbSNP
rs1378350152 1535 dbSNP
rs1421453668 1537 dbSNP
rs1158648720 1538 dbSNP
rs1343602507 1542 dbSNP
rs1374387383 1543 dbSNP
rs373647922 1546 dbSNP
rs920982741 1547 dbSNP
rs1253892053 1552 dbSNP
rs923646972 1553 dbSNP
rs973823374 1556 dbSNP
rs1243038157 1558 dbSNP
rs979278975 1563 dbSNP
rs967845049 1565 dbSNP
rs59245729 1568 dbSNP
rs1015441613 1569 dbSNP
rs1208245797 1573 dbSNP
rs1446744168 1587 dbSNP
rs1375320159 1591 dbSNP
rs1483712324 1593 dbSNP
rs1177713674 1595 dbSNP
rs779694074 1598 dbSNP
rs960636620 1606 dbSNP
rs529911672 1611 dbSNP
rs1179241592 1619 dbSNP
rs953544985 1620 dbSNP
rs34346717 1627 dbSNP
rs1412297195 1638 dbSNP
rs1030325460 1644 dbSNP
rs1333513302 1645 dbSNP
rs145997963 1646 dbSNP
rs1002866260 1654 dbSNP
rs1331091701 1656 dbSNP
rs1401498748 1679 dbSNP
rs547435548 1682 dbSNP
rs1449628865 1683 dbSNP
rs34557475 1684 dbSNP
rs1367558249 1689 dbSNP
rs1217502584 1695 dbSNP
rs1303514189 1701 dbSNP
rs34645929 1708 dbSNP
rs185092828 1709 dbSNP
rs1255900581 1711 dbSNP
rs34755483 1721 dbSNP
rs887934000 1722 dbSNP
rs934864562 1723 dbSNP
rs891370626 1727 dbSNP
rs1437816748 1730 dbSNP
rs1239957915 1731 dbSNP
rs1182356457 1734 dbSNP
rs1045313572 1737 dbSNP
rs142687861 1770 dbSNP
rs115441226 1775 dbSNP
rs1398522600 1782 dbSNP
rs920951564 1785 dbSNP
rs1038099585 1786 dbSNP
rs1349748813 1786 dbSNP
rs917606793 1788 dbSNP
rs1434948432 1789 dbSNP
rs1281574234 1791 dbSNP
rs139392179 1801 dbSNP
rs180674804 1804 dbSNP
rs923698914 1806 dbSNP
rs1276586737 1808 dbSNP
rs960854507 1814 dbSNP
rs1218960608 1815 dbSNP
rs1288886377 1815 dbSNP
rs1449791066 1818 dbSNP
rs1312103239 1823 dbSNP
rs927869561 1829 dbSNP
rs980658829 1830 dbSNP
rs1425270847 1835 dbSNP
rs200307176 1836 dbSNP
rs189203506 1843 dbSNP
rs879028582 1847 dbSNP
rs1339964904 1849 dbSNP
rs1332244291 1852 dbSNP
rs1398046351 1853 dbSNP
rs1376280388 1854 dbSNP
rs1158217710 1855 dbSNP
rs534311286 1856 dbSNP
rs1417641415 1857 dbSNP
rs1381896450 1858 dbSNP
rs373417782 1863 dbSNP
rs1472414104 1864 dbSNP
rs59771071 1864 dbSNP
rs879056358 1864 dbSNP
rs1428174981 1865 dbSNP
rs1189017571 1866 dbSNP
rs1400912442 1867 dbSNP
rs1485827009 1867 dbSNP
rs1325518619 1868 dbSNP
rs1251964182 1869 dbSNP
rs1320920505 1869 dbSNP
rs1437022769 1870 dbSNP
rs1283367199 1871 dbSNP
rs1354057743 1872 dbSNP
rs1229931624 1873 dbSNP
rs1352930022 1873 dbSNP
rs1262035062 1874 dbSNP
rs1213919386 1875 dbSNP
rs1264707424 1877 dbSNP
rs1487527918 1879 dbSNP
rs1288534239 1880 dbSNP
rs1224871585 1881 dbSNP
rs1356222819 1882 dbSNP
rs1282559399 1883 dbSNP
rs1247106725 1884 dbSNP
rs1237238054 1888 dbSNP
rs1156929097 1889 dbSNP
rs1165392391 1889 dbSNP
rs1315491517 1889 dbSNP
rs1333805382 1889 dbSNP
rs1335831500 1889 dbSNP
rs1338960670 1889 dbSNP
rs1362600215 1889 dbSNP
rs1386350734 1889 dbSNP
rs1401484038 1889 dbSNP
rs1419639188 1889 dbSNP
rs1449898064 1889 dbSNP
rs1472036944 1889 dbSNP
rs370296260 1889 dbSNP
rs1172092929 1890 dbSNP
rs375649053 1890 dbSNP
rs1356100237 1891 dbSNP
rs1416391403 1891 dbSNP
rs1399341036 1892 dbSNP
rs1444446551 1893 dbSNP
rs373440455 1894 dbSNP
rs1398330721 1895 dbSNP
rs1362275722 1902 dbSNP
rs1389306532 1912 dbSNP
rs1318693174 1919 dbSNP
rs1264120123 1920 dbSNP
rs1457632759 1928 dbSNP
rs1404763437 1935 dbSNP
rs1240521753 1948 dbSNP
rs1420221080 1949 dbSNP
rs1411514513 1958 dbSNP
rs1198174309 1971 dbSNP
rs1376064244 1973 dbSNP
rs1479119541 1986 dbSNP
rs1177478301 1987 dbSNP
rs1422614302 1989 dbSNP
rs1463828122 1996 dbSNP
rs868466881 2000 dbSNP
rs1397050644 2002 dbSNP
rs1386145523 2006 dbSNP
rs1321007384 2028 dbSNP
rs1332368918 2036 dbSNP
rs1223713354 2045 dbSNP
rs1164865682 2048 dbSNP
rs1217125068 2072 dbSNP
rs1253456276 2073 dbSNP
rs1475250993 2075 dbSNP
rs1481246255 2079 dbSNP
rs1422235856 2084 dbSNP
rs1191088061 2089 dbSNP
rs1478584796 2090 dbSNP
rs1200266670 2092 dbSNP
rs1262682127 2093 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124B_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + B HITS-CLIP data was present in Chi_ControlA_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' aaggugacgauguuggaGGGUCu 5'
                           ||||| 
Target 5' -----------------CCCAGa 3'
1 - 6
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_124B_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + B
Location of target site ENST00000398033.4 | 3UTR | UUCCCAGACGGGGUGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset Chi_ControlA_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control A
Location of target site ENST00000398033.4 | 3UTR | CCCAGAUGGGGUGGCUGCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
HNSC 0.614 0.29 0.500 0.33 3 Click to see details
HNSC 0.614 0.29 0.500 0.33 3 Click to see details
HNSC 0.614 0.29 0.500 0.33 3 Click to see details
HNSC 0.614 0.29 0.500 0.33 3 Click to see details
HNSC 0.614 0.29 0.500 0.33 3 Click to see details
HNSC 0.614 0.29 0.500 0.33 3 Click to see details
HNSC 0.614 0.29 0.500 0.33 3 Click to see details
HNSC 0.614 0.29 0.500 0.33 3 Click to see details
HNSC 0.614 0.29 0.500 0.33 3 Click to see details
167 hsa-miR-3192-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT058548 CTTNBP2NL CTTNBP2 N-terminal like 2 2
MIRT139892 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT207395 MAT2A methionine adenosyltransferase 2A 2 6
MIRT294640 ZNF548 zinc finger protein 548 2 2
MIRT324251 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT441475 BEST3 bestrophin 3 2 2
MIRT445233 SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 2 2
MIRT446763 ZNF491 zinc finger protein 491 2 2
MIRT451003 EPS15L1 epidermal growth factor receptor pathway substrate 15 like 1 2 2
MIRT452436 QDPR quinoid dihydropteridine reductase 2 2
MIRT452582 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452950 DISC1 disrupted in schizophrenia 1 2 2
MIRT453309 ZNF394 zinc finger protein 394 2 2
MIRT453810 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT454101 TMEM209 transmembrane protein 209 2 2
MIRT456228 LIX1L limb and CNS expressed 1 like 2 4
MIRT456738 TMEM239 transmembrane protein 239 2 2
MIRT456806 SIGLEC14 sialic acid binding Ig like lectin 14 2 4
MIRT457499 SLC35F6 solute carrier family 35 member F6 2 2
MIRT458037 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT459041 ZNF490 zinc finger protein 490 2 2
MIRT459135 FADS6 fatty acid desaturase 6 2 2
MIRT460126 CXCL16 C-X-C motif chemokine ligand 16 2 2
MIRT460506 FAM105A family with sequence similarity 105 member A 2 6
MIRT460944 NOA1 nitric oxide associated 1 2 4
MIRT461101 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT462641 PHF5A PHD finger protein 5A 2 2
MIRT463584 ZBTB38 zinc finger and BTB domain containing 38 2 2
MIRT466567 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT467090 SRRD SRR1 domain containing 2 2
MIRT471093 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472596 NACC1 nucleus accumbens associated 1 2 2
MIRT473084 MORN4 MORN repeat containing 4 2 2
MIRT475977 GTPBP2 GTP binding protein 2 2 2
MIRT477054 FAM210A family with sequence similarity 210 member A 2 2
MIRT478303 DDX19A DEAD-box helicase 19A 2 4
MIRT478489 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478500 CYP1B1 cytochrome P450 family 1 subfamily B member 1 2 2
MIRT478858 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479096 CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4 2 2
MIRT479180 CLSPN claspin 2 2
MIRT479215 CLCC1 chloride channel CLIC like 1 2 2
MIRT481176 AVL9 AVL9 cell migration associated 2 6
MIRT483032 KHSRP KH-type splicing regulatory protein 2 4
MIRT485150 RASL10B RAS like family 10 member B 2 2
MIRT486104 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486319 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT489443 IFNLR1 interferon lambda receptor 1 2 2
MIRT489585 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489702 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490184 TMEM63C transmembrane protein 63C 2 2
MIRT491211 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491276 DHX40 DEAH-box helicase 40 2 2
MIRT495162 CNGA2 cyclic nucleotide gated channel alpha 2 2 4
MIRT495222 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT496820 CHRNB2 cholinergic receptor nicotinic beta 2 subunit 2 2
MIRT498602 KRT8 keratin 8 2 2
MIRT500003 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT502065 KRAS KRAS proto-oncogene, GTPase 2 2
MIRT508197 SLC35E1 solute carrier family 35 member E1 2 2
MIRT508477 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT509635 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT511039 NRF1 nuclear respiratory factor 1 2 2
MIRT516684 ZNF860 zinc finger protein 860 2 4
MIRT518394 ZNF250 zinc finger protein 250 2 2
MIRT518907 CDC14B cell division cycle 14B 2 2
MIRT520502 TRAM2 translocation associated membrane protein 2 2 6
MIRT521459 RAD51 RAD51 recombinase 2 2
MIRT522354 NCKIPSD NCK interacting protein with SH3 domain 2 4
MIRT522594 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT523267 HIST1H2AE histone cluster 1 H2A family member e 2 2
MIRT523532 GLUL glutamate-ammonia ligase 2 4
MIRT524186 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT526842 PHC1 polyhomeotic homolog 1 2 2
MIRT528729 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT540695 BMP3 bone morphogenetic protein 3 2 2
MIRT544483 TRIM4 tripartite motif containing 4 2 2
MIRT551566 LETM1 leucine zipper and EF-hand containing transmembrane protein 1 2 2
MIRT563619 ZNF277 zinc finger protein 277 2 2
MIRT564467 SLC35E2 solute carrier family 35 member E2 2 2
MIRT565031 VAV2 vav guanine nucleotide exchange factor 2 2 2
MIRT570294 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT572932 VDAC2 voltage dependent anion channel 2 2 2
MIRT573501 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573675 HES6 hes family bHLH transcription factor 6 2 2
MIRT609619 TRPC4AP transient receptor potential cation channel subfamily C member 4 associated protein 2 2
MIRT611966 PKD1 polycystin 1, transient receptor potential channel interacting 2 2
MIRT613930 HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 2 2
MIRT617733 ATCAY ATCAY, caytaxin 2 4
MIRT618878 MBL2 mannose binding lectin 2 2 2
MIRT627590 SHROOM3 shroom family member 3 2 2
MIRT628516 ZNF878 zinc finger protein 878 2 2
MIRT633964 GRWD1 glutamate rich WD repeat containing 1 2 2
MIRT634530 NEGR1 neuronal growth regulator 1 2 2
MIRT635455 APOLD1 apolipoprotein L domain containing 1 2 2
MIRT636412 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT639672 PPEF2 protein phosphatase with EF-hand domain 2 2 6
MIRT642667 RGS6 regulator of G protein signaling 6 2 2
MIRT644080 A4GALT alpha 1,4-galactosyltransferase (P blood group) 2 2
MIRT647318 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT647942 RNF152 ring finger protein 152 2 2
MIRT648687 AP1M1 adaptor related protein complex 1 mu 1 subunit 2 2
MIRT648817 ZNF689 zinc finger protein 689 2 2
MIRT650347 TREM1 triggering receptor expressed on myeloid cells 1 2 2
MIRT650374 MOCS3 molybdenum cofactor synthesis 3 2 4
MIRT655935 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT663778 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT664297 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT665842 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT668929 COL9A2 collagen type IX alpha 2 chain 2 2
MIRT669673 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669907 KIAA0754 KIAA0754 2 4
MIRT670248 TRIM13 tripartite motif containing 13 2 2
MIRT670368 ULBP3 UL16 binding protein 3 2 4
MIRT670642 BVES blood vessel epicardial substance 2 2
MIRT670749 HOOK3 hook microtubule tethering protein 3 2 2
MIRT671184 ZNF891 zinc finger protein 891 2 2
MIRT673946 ZNF500 zinc finger protein 500 2 2
MIRT674682 PLCE1 phospholipase C epsilon 1 2 2
MIRT677912 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678876 FAM118A family with sequence similarity 118 member A 2 2
MIRT679528 RAB36 RAB36, member RAS oncogene family 2 2
MIRT680589 ZNF573 zinc finger protein 573 2 2
MIRT680650 KIAA1456 KIAA1456 2 2
MIRT681149 INTS7 integrator complex subunit 7 2 2
MIRT681177 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681234 DUSP19 dual specificity phosphatase 19 2 2
MIRT681626 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681643 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT681926 KAT7 lysine acetyltransferase 7 2 2
MIRT682050 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT682156 SMS spermine synthase 2 2
MIRT683555 HAVCR1 hepatitis A virus cellular receptor 1 2 2
MIRT684304 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT684458 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT685986 CCDC77 coiled-coil domain containing 77 2 2
MIRT686782 AZF1 azoospermia factor 1 2 2
MIRT687329 OSMR oncostatin M receptor 2 2
MIRT687629 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT688792 CCNB1 cyclin B1 2 2
MIRT689756 PRR13 proline rich 13 2 2
MIRT690823 SGSM2 small G protein signaling modulator 2 2 2
MIRT691310 ZNF681 zinc finger protein 681 2 2
MIRT692676 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT693508 MOB3A MOB kinase activator 3A 2 2
MIRT694657 C14orf119 chromosome 14 open reading frame 119 2 2
MIRT694889 ZNF417 zinc finger protein 417 2 2
MIRT695740 ZNF117 zinc finger protein 117 2 2
MIRT697101 GPKOW G-patch domain and KOW motifs 2 2
MIRT698968 SPAST spastin 2 2
MIRT700379 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT703930 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT706234 SYT15 synaptotagmin 15 2 2
MIRT706494 SEPT6 septin 6 2 2
MIRT710451 BTNL3 butyrophilin like 3 2 2
MIRT711684 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT711997 F9 coagulation factor IX 2 2
MIRT712727 NCAPG2 non-SMC condensin II complex subunit G2 2 2
MIRT713111 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT713156 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT713440 AJAP1 adherens junctions associated protein 1 2 2
MIRT713830 NUP98 nucleoporin 98 2 2
MIRT714979 RAB21 RAB21, member RAS oncogene family 2 2
MIRT717411 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT718433 ZNF85 zinc finger protein 85 2 2
MIRT720575 SDHAF2 succinate dehydrogenase complex assembly factor 2 2 2
MIRT725098 TMEM120B transmembrane protein 120B 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3192 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3192 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-3192 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3192-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-3192-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-3192-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-3192-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-3192-5p Platinum 23939 resistant tissue
hsa-miR-3192-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3192-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-3192-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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