pre-miRNA Information
pre-miRNA hsa-mir-6819   
Genomic Coordinates chr22: 36286847 - 36286907
Description Homo sapiens miR-6819 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6819-3p
Sequence 41| AAGCCUCUGUCCCCACCCCAG |61
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1279530967 2 dbSNP
rs967579979 3 dbSNP
rs776891214 4 dbSNP
rs771166635 8 dbSNP
rs747037324 9 dbSNP
rs879248090 11 dbSNP
rs1485325191 12 dbSNP
rs778157316 16 dbSNP
Putative Targets

Gene Information
Gene Symbol MOB3A   
Synonyms MOB-LAK, MOB1C, MOBKL2A, moblak
Description MOB kinase activator 3A
Transcript NM_130807   
Expression
Putative miRNA Targets on MOB3A
3'UTR of MOB3A
(miRNA target sites are highlighted)
>MOB3A|NM_130807|3'UTR
   1 GAGCCCCGCGGGTCTCCCGGTGCCCGAACCGCCGCTGGGGCCTCGGAGACTTGGAGGAGGACGCTCTGGAACCATCATCC
  81 CGCTTCTCTCCGGCCTGAGCATCTCAGGGAGACCAGGGGCCGAGCCGCTGAGCAGGTGTTGGTCCTCAGGAGCTCCAACC
 161 CCGGACGGCAGATGCCTTCCTCAGTCTCGAGCCTCAGTCTCCCGTCTGGGACTAAAACGTGAACTCTGTAATTCTATGTG
 241 TTACTAGCAACCGGAAAAGCCCACTGTGTTTTTAAACCACTTCCACTTTCCAGGAGGCTGGATGGCTTCCAGGGTCACTC
 321 CTTGCCCTGGGTGGCTCCCAGGCTCCTGGAACTTCTGCCTCCACCTCGCTGGGGAGCCCCCAGGGCTGCTGTGGCCACAG
 401 CCCTGCCTGGGCCTGTCTCTCAAGGGCACCCAGCTTGCTCGGCCTCCTACATGTCTCCCGTTGGGGAGGCAAGAGGCTGA
 481 GGGGCTTCCGAGCCCCTGAGAGCGGACATCTCCTCCCGCAGGCCTTTACTCCGCACTCCCCACTGGCAGCCGCTGGTGTC
 561 TCTTCACACAGAGGCACAACCTGGACCCAGGCAGCCTCTTTCCTCCCTCCCCAATCTCTTCCATTTTTCTACAGATTTTT
 641 TTTTTTTTGGTCATACTAGAGACAGGGGTCTCGCTGAACTCCTGGCCTCCAGTGATCCTCCATCCTCGGCCTCCCAAAGT
 721 GCTGGAATCACAGGGGTGAGCCACCGCACCCAGCCCTCTCTCTTCCTCAATGCACTCTGCTTCTTCCGTTCTTCCGAAAC
 801 ATTCAGCTGACTGTATCCAGGGCTTCCTGGACTCCTGGGACCCCACGTCCTGCACCCCGGCTTCTGACTCATTTCCTAAG
 881 GGCCCCTTTGTGTATCATAAAGGGTTTGATTTTTATAGTCACATTTACAACCATCTTGAGATTTTTATTTTTTTTGAACG
 961 GAGTCTCCCACTGTCGCCCAGACTGGAGTCCAGTGGCACAATCTCGGCTCACTGCATCCTCCACCTCCTGGGTTCAAGTG
1041 ATTCTCCTGCTTCAGCCTCCCAAGTAGCTGGGATTACAGGTGTGCGCCACCACGCCCAGGAAATTATTGTAGTTTTAGTA
1121 GAGACAAGATTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACTTCAGGTGATCCGCCTACCTTGGCCTCCAAAAG
1201 TGCTGGGATTACAGGCATGAGCTACTGCACCCGGCCTAACCAGGCTGGAGTGCAGTGGTGGGATCTCGGCTCACTGCAAG
1281 CTCCGCCTCCCAGATTCACGCCATTCTCCTGCCTCAGCCTCCCCAGCAGCTGGGACTACAGGCACCCACCGTCACACCCG
1361 GCTAATTTTTTTGTATTTTAGTAGAGACAGGGTTTCACCGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTTGTGATCC
1441 ACCAGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCCGGCCAAGAATTTTTTTATCGATAACAT
1521 AGTGAGCTCTCTGCCTCTTCGGAACGATGTCCACTTTGCTTATGATCAACCCAAGCAGGACTCTTCTCTCCCTGGACGCC
1601 TCTCCCCTGGTCTGGAATCTTCCAGTTCTGCCAGAATTGGCCTTTCCCAGATGCTGCAAACTTCCAGTTGAACCCCTTTT
1681 TCTGTGTGGCCCCTGGGGCTGCGAGACCAAAATCCATGAGTTCTGTGTACCCTAGACCTTTGGAAGGTGAGAGCAGGGCC
1761 CTGAGAAAAGGCAGCCACCTCCTCTCCCTGGCTGAACCCCTGCCACCCTACTCCTCACCAGAATTGTCAGTGGCCTTTCA
1841 CCACAGTGGTCCTTCCTGCCTGAGCCCTGCACTGTCCCAGACCACACAGAAGTCTGGTCACCTCTGGGCGCCTGGGATGG
1921 TCACCGAAGAGAAGCACGCTGTCCCCGTCTCTCCTGGCTTCTGCCAGAAAATCGAACAAGTGCAATTAACACACTGTTAC
2001 TGCCGAAGCCTGAAACTCCCAGGACTTGTCCTTGATCCTTCCAGAAACCACCAGGTCCGGCACTTGGAGCCCCCCGGAGA
2081 GGGACCTCCCAGCCGAGCCCTCAAAGAACTCCATGAAATCAGGAACTGCTTGATGAAATGTATCTCCTTGTACCTGGAAG
2161 ATGAAGCCCAAACACCCACACCTCTGTCTCCCCCAGGGCTCGGGATGTCTCCAGCAGCCCGGCCACGCAGCTTCCCAGGT
2241 GGGCTCGGGGAGGTGGGAGCAGGGACCATCTCTGTCCCCTCCACCCTCACTCCATCCACCTCGGAGACCACCCTCCCCCA
2321 GCCAGATACGGAATAAAACTACAGACGCAGACGTCGGAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaccCCACCCCU--G-UCUCCGAa 5'
              | ||||||  | ||||||| 
Target 5' tcccGTTGGGGAGGCAAGAGGCTg 3'
456 - 479 159.00 -22.80
2
miRNA  3' gaccccaccccUGUCUCCGaa 5'
                     ||||||||  
Target 5' tgtctcttcacACAGAGGCac 3'
557 - 577 130.00 -11.50
3
miRNA  3' gaccccaccccugUCUCCGAa 5'
                       :|||||| 
Target 5' cttccactttccaGGAGGCTg 3'
280 - 300 124.00 -8.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31612893 6 COSMIC
COSN26984849 18 COSMIC
COSN30517269 18 COSMIC
COSN31514457 19 COSMIC
COSN13791696 26 COSMIC
COSN30507587 36 COSMIC
COSN28576721 40 COSMIC
COSN26984853 45 COSMIC
COSN26671034 72 COSMIC
COSN26984852 72 COSMIC
COSN16131427 76 COSMIC
COSN13791692 122 COSMIC
COSN13791691 126 COSMIC
COSN30150738 135 COSMIC
COSN30109535 136 COSMIC
COSN30466643 164 COSMIC
COSN31506953 182 COSMIC
COSN31537066 192 COSMIC
COSN31609380 234 COSMIC
COSN8257193 532 COSMIC
COSN25235865 1006 COSMIC
COSN26881247 1124 COSMIC
COSN25167756 1502 COSMIC
COSN59097 2111 COSMIC
COSN29387662 2238 COSMIC
COSN22402920 2246 COSMIC
COSN14550572 2247 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1378304342 1 dbSNP
rs373445365 3 dbSNP
rs369446517 7 dbSNP
rs775684733 8 dbSNP
rs771868773 9 dbSNP
rs199578809 10 dbSNP
rs774116448 11 dbSNP
rs770729492 18 dbSNP
rs373522907 19 dbSNP
rs1382106784 20 dbSNP
rs777326092 21 dbSNP
rs755605847 23 dbSNP
rs780795210 25 dbSNP
rs368335071 26 dbSNP
rs1188474944 30 dbSNP
rs201344352 31 dbSNP
rs375222150 33 dbSNP
rs560485012 34 dbSNP
rs368995913 35 dbSNP
rs927188621 39 dbSNP
rs2286364 40 dbSNP
rs193283677 44 dbSNP
rs138583524 45 dbSNP
rs774906291 47 dbSNP
rs767639622 49 dbSNP
rs1241004664 58 dbSNP
rs373455207 59 dbSNP
rs1443840321 60 dbSNP
rs887656907 62 dbSNP
rs150549861 63 dbSNP
rs1398893911 64 dbSNP
rs1012180410 65 dbSNP
rs1345299467 71 dbSNP
rs1458456683 72 dbSNP
rs965025835 74 dbSNP
rs896505805 81 dbSNP
rs1006436914 82 dbSNP
rs1223738936 83 dbSNP
rs1056463719 91 dbSNP
rs774576002 92 dbSNP
rs924132766 93 dbSNP
rs1044316030 94 dbSNP
rs993933954 97 dbSNP
rs1461942972 98 dbSNP
rs1297367681 114 dbSNP
rs1239008639 121 dbSNP
rs946911159 122 dbSNP
rs1056827033 126 dbSNP
rs911423623 127 dbSNP
rs1162728946 130 dbSNP
rs1473322456 147 dbSNP
rs577341609 159 dbSNP
rs1414660845 162 dbSNP
rs557449339 163 dbSNP
rs1324474640 164 dbSNP
rs776336838 166 dbSNP
rs111744616 167 dbSNP
rs1442075684 169 dbSNP
rs1299293040 173 dbSNP
rs141791372 174 dbSNP
rs148051183 175 dbSNP
rs553347897 180 dbSNP
rs1044707184 181 dbSNP
rs1221184234 183 dbSNP
rs1280432212 188 dbSNP
rs535422301 203 dbSNP
rs962141586 204 dbSNP
rs568353329 218 dbSNP
rs749329827 219 dbSNP
rs1052866635 226 dbSNP
rs1196579389 227 dbSNP
rs934776418 230 dbSNP
rs1262851428 234 dbSNP
rs1006428096 236 dbSNP
rs1174008397 252 dbSNP
rs951932358 253 dbSNP
rs777973138 259 dbSNP
rs1485988106 260 dbSNP
rs768461107 263 dbSNP
rs1302581271 268 dbSNP
rs910522264 297 dbSNP
rs1438843191 300 dbSNP
rs569679193 303 dbSNP
rs147041458 306 dbSNP
rs952248234 340 dbSNP
rs1213709875 343 dbSNP
rs1275109674 344 dbSNP
rs375605317 348 dbSNP
rs1320548971 363 dbSNP
rs531555105 365 dbSNP
rs570625961 367 dbSNP
rs993654780 368 dbSNP
rs999605885 378 dbSNP
rs1239935585 384 dbSNP
rs1474884899 385 dbSNP
rs1187419316 388 dbSNP
rs552733689 391 dbSNP
rs1043818098 395 dbSNP
rs1423252333 400 dbSNP
rs1163559616 405 dbSNP
rs1366256091 410 dbSNP
rs1407221702 431 dbSNP
rs1326018576 437 dbSNP
rs1316049261 440 dbSNP
rs946849351 441 dbSNP
rs1298013397 442 dbSNP
rs527784022 447 dbSNP
rs911405388 452 dbSNP
rs560512520 459 dbSNP
rs746988166 460 dbSNP
rs547416334 461 dbSNP
rs1356969072 464 dbSNP
rs905533951 467 dbSNP
rs1163139905 485 dbSNP
rs976120344 489 dbSNP
rs778038125 490 dbSNP
rs1395229727 493 dbSNP
rs1022606026 494 dbSNP
rs141520589 503 dbSNP
rs984571158 504 dbSNP
rs75333342 508 dbSNP
rs563220488 517 dbSNP
rs990697335 518 dbSNP
rs112760145 530 dbSNP
rs577060356 532 dbSNP
rs1034905175 533 dbSNP
rs1450267553 538 dbSNP
rs558703091 539 dbSNP
rs1189028401 540 dbSNP
rs545537549 543 dbSNP
rs111927578 551 dbSNP
rs1246939044 552 dbSNP
rs1277233511 563 dbSNP
rs1349388695 564 dbSNP
rs1253064663 581 dbSNP
rs910563807 592 dbSNP
rs902529167 607 dbSNP
rs1203376952 609 dbSNP
rs1456358967 610 dbSNP
rs1257331904 611 dbSNP
rs77496865 614 dbSNP
rs1363282788 621 dbSNP
rs1472992881 622 dbSNP
rs72981482 622 dbSNP
rs375609822 623 dbSNP
rs1298931518 624 dbSNP
rs1218813036 630 dbSNP
rs1469502274 634 dbSNP
rs79532669 648 dbSNP
rs1334652336 649 dbSNP
rs1491308905 649 dbSNP
rs770816636 649 dbSNP
rs201718212 650 dbSNP
rs745335887 650 dbSNP
rs77651236 650 dbSNP
rs200609892 651 dbSNP
rs1372077788 666 dbSNP
rs1222559820 672 dbSNP
rs1049961144 697 dbSNP
rs550072191 704 dbSNP
rs934223737 707 dbSNP
rs1035161715 711 dbSNP
rs1250522750 733 dbSNP
rs372903877 735 dbSNP
rs763709170 740 dbSNP
rs756581208 741 dbSNP
rs1463982853 745 dbSNP
rs753234342 746 dbSNP
rs1020019504 747 dbSNP
rs4404194 748 dbSNP
rs537728298 752 dbSNP
rs984927394 754 dbSNP
rs930432137 756 dbSNP
rs916405053 763 dbSNP
rs1343145445 764 dbSNP
rs1249250237 768 dbSNP
rs114972100 770 dbSNP
rs1301614635 773 dbSNP
rs1481585797 774 dbSNP
rs1254016722 778 dbSNP
rs117685982 787 dbSNP
rs960533569 788 dbSNP
rs774562326 791 dbSNP
rs4476281 795 dbSNP
rs1031550927 796 dbSNP
rs189071599 796 dbSNP
rs1022319721 804 dbSNP
rs566976772 812 dbSNP
rs530285002 820 dbSNP
rs889908445 826 dbSNP
rs767031736 832 dbSNP
rs1190702564 838 dbSNP
rs1389357905 843 dbSNP
rs1307810826 846 dbSNP
rs1028413131 847 dbSNP
rs1377714005 855 dbSNP
rs998330623 856 dbSNP
rs901354546 858 dbSNP
rs1037674953 859 dbSNP
rs1293613199 864 dbSNP
rs1369215214 868 dbSNP
rs763289113 878 dbSNP
rs1377673665 880 dbSNP
rs1295264652 884 dbSNP
rs940307425 885 dbSNP
rs530126084 886 dbSNP
rs886099944 890 dbSNP
rs1175087473 891 dbSNP
rs367707545 897 dbSNP
rs1313635610 899 dbSNP
rs1049127096 917 dbSNP
rs146526034 930 dbSNP
rs1267322548 952 dbSNP
rs916295251 959 dbSNP
rs118088704 960 dbSNP
rs373099729 961 dbSNP
rs1186934394 968 dbSNP
rs142587908 971 dbSNP
rs1485849297 975 dbSNP
rs927849942 976 dbSNP
rs1351155523 980 dbSNP
rs1259359144 996 dbSNP
rs1214650601 1000 dbSNP
rs919221358 1001 dbSNP
rs978396452 1005 dbSNP
rs1437635471 1006 dbSNP
rs1261382150 1008 dbSNP
rs939591097 1010 dbSNP
rs565176785 1012 dbSNP
rs1314906294 1020 dbSNP
rs928145893 1022 dbSNP
rs184691618 1028 dbSNP
rs1466426866 1029 dbSNP
rs1241066544 1035 dbSNP
rs573052429 1041 dbSNP
rs1482867749 1049 dbSNP
rs1182423952 1051 dbSNP
rs1415314644 1055 dbSNP
rs915219803 1068 dbSNP
rs560214120 1071 dbSNP
rs970245620 1076 dbSNP
rs111910957 1085 dbSNP
rs989818049 1086 dbSNP
rs145355850 1093 dbSNP
rs555884161 1094 dbSNP
rs1358991741 1099 dbSNP
rs1397737524 1108 dbSNP
rs150025771 1109 dbSNP
rs1031267581 1111 dbSNP
rs577220159 1120 dbSNP
rs998745167 1128 dbSNP
rs1409215038 1138 dbSNP
rs1289082963 1147 dbSNP
rs1331427669 1160 dbSNP
rs1221956398 1165 dbSNP
rs1158608546 1169 dbSNP
rs1276213748 1175 dbSNP
rs1311448392 1179 dbSNP
rs560381159 1180 dbSNP
rs558843056 1185 dbSNP
rs1479622793 1186 dbSNP
rs1180763902 1188 dbSNP
rs1019224837 1199 dbSNP
rs1007387165 1201 dbSNP
rs1164081931 1212 dbSNP
rs1475501793 1213 dbSNP
rs889240501 1215 dbSNP
rs1415473122 1225 dbSNP
rs1049177655 1226 dbSNP
rs1259337583 1232 dbSNP
rs545462107 1233 dbSNP
rs1353209100 1247 dbSNP
rs965517311 1248 dbSNP
rs534001225 1256 dbSNP
rs1004861710 1261 dbSNP
rs566638844 1267 dbSNP
rs897842655 1268 dbSNP
rs1274553157 1269 dbSNP
rs567946347 1272 dbSNP
rs548700504 1273 dbSNP
rs536329307 1277 dbSNP
rs1339925490 1279 dbSNP
rs994441653 1284 dbSNP
rs1337662535 1285 dbSNP
rs1196835827 1290 dbSNP
rs1276699018 1296 dbSNP
rs1245705437 1299 dbSNP
rs1218454146 1300 dbSNP
rs1478160353 1304 dbSNP
rs928229014 1311 dbSNP
rs569278176 1313 dbSNP
rs1417854396 1320 dbSNP
rs1318517435 1326 dbSNP
rs894829099 1327 dbSNP
rs1169843870 1330 dbSNP
rs948247398 1336 dbSNP
rs1422750796 1344 dbSNP
rs1322983766 1347 dbSNP
rs1054790606 1350 dbSNP
rs746898172 1351 dbSNP
rs1276359517 1355 dbSNP
rs8102231 1356 dbSNP
rs1298329069 1358 dbSNP
rs924301854 1359 dbSNP
rs532330282 1360 dbSNP
rs140621205 1361 dbSNP
rs1223370875 1364 dbSNP
rs151319111 1365 dbSNP
rs191645883 1367 dbSNP
rs1189615890 1373 dbSNP
rs953201424 1373 dbSNP
rs1443346810 1386 dbSNP
rs1027460573 1391 dbSNP
rs866301341 1396 dbSNP
rs187189029 1399 dbSNP
rs976828391 1400 dbSNP
rs1256770164 1407 dbSNP
rs1316576552 1416 dbSNP
rs965522720 1430 dbSNP
rs1434006397 1433 dbSNP
rs1320998703 1438 dbSNP
rs1016100233 1439 dbSNP
rs1242558157 1441 dbSNP
rs1004342474 1442 dbSNP
rs1356505338 1444 dbSNP
rs1229670972 1450 dbSNP
rs1265777864 1455 dbSNP
rs1464171723 1473 dbSNP
rs1209693367 1477 dbSNP
rs953014039 1478 dbSNP
rs112716650 1480 dbSNP
rs1272295483 1487 dbSNP
rs1013151686 1492 dbSNP
rs1003542458 1493 dbSNP
rs111384574 1494 dbSNP
rs1054759883 1497 dbSNP
rs1003239919 1498 dbSNP
rs906248739 1500 dbSNP
rs1159576222 1501 dbSNP
rs1390613946 1502 dbSNP
rs1329059461 1505 dbSNP
rs1302025053 1508 dbSNP
rs1042534497 1510 dbSNP
rs948273243 1510 dbSNP
rs945201724 1512 dbSNP
rs1327996405 1513 dbSNP
rs1228667772 1519 dbSNP
rs893658858 1520 dbSNP
rs1053684501 1522 dbSNP
rs1441067962 1523 dbSNP
rs1257400714 1526 dbSNP
rs1053860727 1527 dbSNP
rs1180048409 1529 dbSNP
rs777107280 1531 dbSNP
rs1184674028 1533 dbSNP
rs1365318443 1534 dbSNP
rs921257258 1537 dbSNP
rs924359088 1540 dbSNP
rs562564010 1541 dbSNP
rs1402763909 1543 dbSNP
rs115821202 1545 dbSNP
rs908599132 1546 dbSNP
rs576881348 1548 dbSNP
rs558908368 1549 dbSNP
rs1410038703 1551 dbSNP
rs1289905946 1559 dbSNP
rs1169493343 1562 dbSNP
rs1477162362 1571 dbSNP
rs1801652 1573 dbSNP
rs1232923228 1574 dbSNP
rs1256979916 1579 dbSNP
rs952898551 1588 dbSNP
rs565806804 1590 dbSNP
rs1347706424 1594 dbSNP
rs115172384 1597 dbSNP
rs991700202 1598 dbSNP
rs553458581 1603 dbSNP
rs958982249 1604 dbSNP
rs573024171 1605 dbSNP
rs1265461350 1608 dbSNP
rs1432843082 1610 dbSNP
rs1194315261 1624 dbSNP
rs1378025279 1624 dbSNP
rs1455607434 1625 dbSNP
rs1455513080 1628 dbSNP
rs973225032 1630 dbSNP
rs1236469679 1636 dbSNP
rs1429756038 1642 dbSNP
rs962159202 1643 dbSNP
rs1015011303 1644 dbSNP
rs1004001509 1645 dbSNP
rs906546718 1654 dbSNP
rs116204589 1659 dbSNP
rs1012521772 1661 dbSNP
rs367874835 1663 dbSNP
rs72981474 1664 dbSNP
rs1345264739 1668 dbSNP
rs1207317680 1673 dbSNP
rs1263786683 1677 dbSNP
rs1009754293 1680 dbSNP
rs1488260894 1684 dbSNP
rs935501968 1686 dbSNP
rs902651253 1689 dbSNP
rs1469702310 1693 dbSNP
rs1186452949 1694 dbSNP
rs1279100296 1699 dbSNP
rs557378084 1702 dbSNP
rs768015995 1703 dbSNP
rs1366250937 1707 dbSNP
rs10420854 1708 dbSNP
rs571271517 1709 dbSNP
rs1433271896 1711 dbSNP
rs944426476 1715 dbSNP
rs1366501648 1723 dbSNP
rs546923216 1725 dbSNP
rs1231303103 1726 dbSNP
rs1310635991 1728 dbSNP
rs1372454981 1732 dbSNP
rs528737916 1750 dbSNP
rs755543980 1751 dbSNP
rs899709706 1755 dbSNP
rs1277275892 1756 dbSNP
rs1441378749 1758 dbSNP
rs1206538294 1762 dbSNP
rs1040999135 1765 dbSNP
rs139078887 1766 dbSNP
rs1188264620 1779 dbSNP
rs1253451146 1784 dbSNP
rs908567535 1788 dbSNP
rs1330607750 1801 dbSNP
rs982869726 1802 dbSNP
rs1164871586 1811 dbSNP
rs372371476 1813 dbSNP
rs931920280 1814 dbSNP
rs1158843958 1817 dbSNP
rs1389903567 1818 dbSNP
rs931430388 1826 dbSNP
rs920086523 1827 dbSNP
rs1396622061 1828 dbSNP
rs991584326 1836 dbSNP
rs373210187 1842 dbSNP
rs1329685024 1854 dbSNP
rs1217861597 1864 dbSNP
rs1378495989 1867 dbSNP
rs961880184 1873 dbSNP
rs531087107 1876 dbSNP
rs1470780000 1884 dbSNP
rs1471390951 1885 dbSNP
rs1181084746 1891 dbSNP
rs1035880850 1892 dbSNP
rs982129541 1899 dbSNP
rs970400572 1901 dbSNP
rs1485523875 1902 dbSNP
rs1021077639 1909 dbSNP
rs143272659 1910 dbSNP
rs893524304 1912 dbSNP
rs1032095227 1917 dbSNP
rs34418412 1917 dbSNP
rs1314797120 1919 dbSNP
rs1012196994 1923 dbSNP
rs1032559957 1925 dbSNP
rs1222751701 1926 dbSNP
rs1225203973 1934 dbSNP
rs996656550 1937 dbSNP
rs182169831 1938 dbSNP
rs1210784049 1946 dbSNP
rs532181778 1947 dbSNP
rs564854788 1949 dbSNP
rs902694078 1949 dbSNP
rs1281163655 1950 dbSNP
rs1041587331 1951 dbSNP
rs944496374 1954 dbSNP
rs1189804492 1955 dbSNP
rs192250704 1956 dbSNP
rs899678537 1958 dbSNP
rs1040956874 1962 dbSNP
rs1008586413 1963 dbSNP
rs1176149337 1971 dbSNP
rs35053596 1972 dbSNP
rs1050137729 1973 dbSNP
rs887114969 1974 dbSNP
rs1047540838 1977 dbSNP
rs931339958 1983 dbSNP
rs573042772 1985 dbSNP
rs554805850 1993 dbSNP
rs773509427 1994 dbSNP
rs973328485 1995 dbSNP
rs115629296 1998 dbSNP
rs1410293513 1999 dbSNP
rs1161903786 2000 dbSNP
rs1339987593 2002 dbSNP
rs575366828 2004 dbSNP
rs928830638 2005 dbSNP
rs1439164599 2008 dbSNP
rs1218992766 2013 dbSNP
rs557050116 2019 dbSNP
rs981713731 2020 dbSNP
rs1489051969 2021 dbSNP
rs968068518 2025 dbSNP
rs913491537 2028 dbSNP
rs765354073 2049 dbSNP
rs368922419 2051 dbSNP
rs988172511 2058 dbSNP
rs958040564 2059 dbSNP
rs570931010 2061 dbSNP
rs1032064422 2069 dbSNP
rs538731175 2070 dbSNP
rs1240054066 2071 dbSNP
rs571335121 2072 dbSNP
rs1327695094 2075 dbSNP
rs148627276 2076 dbSNP
rs534976690 2085 dbSNP
rs1019809921 2086 dbSNP
rs1340937768 2088 dbSNP
rs1019907259 2089 dbSNP
rs144052732 2094 dbSNP
rs886991535 2095 dbSNP
rs149502504 2097 dbSNP
rs995443199 2099 dbSNP
rs898515706 2104 dbSNP
rs1293644964 2106 dbSNP
rs1234957515 2120 dbSNP
rs1055787051 2140 dbSNP
rs898848064 2146 dbSNP
rs13597 2163 dbSNP
rs531532773 2170 dbSNP
rs1801649 2173 dbSNP
rs1288468664 2175 dbSNP
rs1037351330 2193 dbSNP
rs1463238246 2196 dbSNP
rs1166790029 2198 dbSNP
rs367657690 2199 dbSNP
rs907774162 2201 dbSNP
rs187976104 2202 dbSNP
rs1283117466 2209 dbSNP
rs1355657239 2215 dbSNP
rs147426564 2217 dbSNP
rs913450221 2220 dbSNP
rs958092677 2221 dbSNP
rs1206094178 2222 dbSNP
rs1286887027 2224 dbSNP
rs1441213357 2226 dbSNP
rs532244453 2227 dbSNP
rs1186880612 2229 dbSNP
rs1258369732 2230 dbSNP
rs1173918661 2231 dbSNP
rs1180364630 2234 dbSNP
rs1167525052 2235 dbSNP
rs1477020473 2238 dbSNP
rs1456450390 2239 dbSNP
rs1158949889 2241 dbSNP
rs1386989686 2244 dbSNP
rs143041620 2246 dbSNP
rs1185508940 2247 dbSNP
rs1475545906 2250 dbSNP
rs1243333380 2252 dbSNP
rs116432430 2263 dbSNP
rs1467958214 2272 dbSNP
rs1240147079 2287 dbSNP
rs924967248 2290 dbSNP
rs1343452830 2296 dbSNP
rs1200437751 2302 dbSNP
rs1273680314 2303 dbSNP
rs975159646 2306 dbSNP
rs963824048 2313 dbSNP
rs10421895 2314 dbSNP
rs199737894 2315 dbSNP
rs778629788 2315 dbSNP
rs1008444961 2316 dbSNP
rs1215367323 2317 dbSNP
rs1008438754 2319 dbSNP
rs954367279 2320 dbSNP
rs1364431044 2323 dbSNP
rs1301302164 2328 dbSNP
rs1435975542 2329 dbSNP
rs951265577 2329 dbSNP
rs561046760 2330 dbSNP
rs1328472386 2342 dbSNP
rs1329773251 2345 dbSNP
rs374241746 2346 dbSNP
rs1354253066 2347 dbSNP
rs544349587 2352 dbSNP
rs898499352 2353 dbSNP
rs1410180086 2355 dbSNP
rs1034345627 2356 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_ControlA_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gaccccACCCCU--G-UCUCCGAa 5'
                ||||||  | ||||||| 
Target 5' ------UGGGGAGGCAAGAGGCUg 3'
1 - 18
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_ControlA_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control A
Location of target site ENST00000357066.3 | 3UTR | UGGGGAGGCAAGAGGCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
108 hsa-miR-6819-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT358318 PANK3 pantothenate kinase 3 2 2
MIRT454719 UBQLNL ubiquilin like 2 2
MIRT471362 PEG10 paternally expressed 10 2 2
MIRT478101 DLG5 discs large MAGUK scaffold protein 5 2 4
MIRT495554 GOLGA6L4 golgin A6 family-like 4 2 2
MIRT495587 GOLGA6L10 golgin A6 family-like 10 2 2
MIRT508315 RPL18 ribosomal protein L18 2 4
MIRT529183 ADAM33 ADAM metallopeptidase domain 33 2 2
MIRT532035 FHDC1 FH2 domain containing 1 2 2
MIRT545131 ANXA5 annexin A5 2 2
MIRT567288 HNRNPL heterogeneous nuclear ribonucleoprotein L 2 2
MIRT568094 CEBPG CCAAT/enhancer binding protein gamma 2 2
MIRT573291 DLX4 distal-less homeobox 4 2 2
MIRT575169 Fam120c family with sequence similarity 120, member C 2 2
MIRT609495 DNASE1L3 deoxyribonuclease 1 like 3 2 2
MIRT611264 EHD3 EH domain containing 3 2 2
MIRT613580 POC5 POC5 centriolar protein 2 2
MIRT616520 C9orf170 chromosome 9 open reading frame 170 2 2
MIRT617098 ZNF667 zinc finger protein 667 2 2
MIRT618268 DDX51 DEAD-box helicase 51 2 2
MIRT618294 ZNF682 zinc finger protein 682 2 2
MIRT618617 SHOX short stature homeobox 2 2
MIRT619741 SRFBP1 serum response factor binding protein 1 2 2
MIRT619784 NRIP2 nuclear receptor interacting protein 2 2 2
MIRT621119 SP110 SP110 nuclear body protein 2 2
MIRT622530 RAD51 RAD51 recombinase 2 2
MIRT623088 NME6 NME/NM23 nucleoside diphosphate kinase 6 2 2
MIRT623938 FKBP14 FK506 binding protein 14 2 2
MIRT624389 CD84 CD84 molecule 2 2
MIRT624860 ABI2 abl interactor 2 2 2
MIRT628752 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT632243 VTA1 vesicle trafficking 1 2 2
MIRT632987 E2F2 E2F transcription factor 2 2 2
MIRT633695 RBM43 RNA binding motif protein 43 2 2
MIRT633766 CENPBD1 CENPB DNA-binding domain containing 1 2 2
MIRT633808 ZNF91 zinc finger protein 91 2 2
MIRT638914 CBLN2 cerebellin 2 precursor 2 2
MIRT641298 SLAMF1 signaling lymphocytic activation molecule family member 1 2 2
MIRT642123 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT642179 HEBP2 heme binding protein 2 2 2
MIRT642617 CDKN3 cyclin dependent kinase inhibitor 3 2 2
MIRT643325 TMEM151B transmembrane protein 151B 2 2
MIRT644534 TMEM134 transmembrane protein 134 2 2
MIRT645820 OMA1 OMA1 zinc metallopeptidase 2 2
MIRT646093 MGST3 microsomal glutathione S-transferase 3 2 2
MIRT646861 SLC35E4 solute carrier family 35 member E4 2 2
MIRT647466 DZIP1L DAZ interacting zinc finger protein 1 like 2 2
MIRT647702 NADSYN1 NAD synthetase 1 2 2
MIRT648082 ZMIZ2 zinc finger MIZ-type containing 2 2 2
MIRT648547 TMEM169 transmembrane protein 169 2 2
MIRT648690 AP1M1 adaptor related protein complex 1 mu 1 subunit 2 2
MIRT649747 GNB5 G protein subunit beta 5 2 2
MIRT650154 ZNF426 zinc finger protein 426 2 2
MIRT650450 CPXM2 carboxypeptidase X, M14 family member 2 2 2
MIRT650943 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT651544 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT652304 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT652890 SYVN1 synoviolin 1 2 2
MIRT654222 RNF19B ring finger protein 19B 2 2
MIRT654676 PSMB5 proteasome subunit beta 5 2 2
MIRT658249 FAXC failed axon connections homolog 2 2
MIRT658363 FAM65B RHO family interacting cell polarization regulator 2 2 2
MIRT659622 CELF1 CUGBP Elav-like family member 1 2 2
MIRT660171 BNIP3L BCL2 interacting protein 3 like 2 2
MIRT660634 ANKRD52 ankyrin repeat domain 52 2 2
MIRT662428 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT662984 PAK3 p21 (RAC1) activated kinase 3 2 2
MIRT663939 ZNF554 zinc finger protein 554 2 2
MIRT666960 PKHD1 PKHD1, fibrocystin/polyductin 2 2
MIRT667945 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT668847 CYCS cytochrome c, somatic 2 2
MIRT671792 RGS17 regulator of G protein signaling 17 2 2
MIRT672382 RPL37 ribosomal protein L37 2 2
MIRT673516 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 4
MIRT674716 FAM73A mitoguardin 1 2 2
MIRT676352 KLF8 Kruppel like factor 8 2 2
MIRT677820 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT678440 PDE4C phosphodiesterase 4C 2 2
MIRT678499 ARHGEF39 Rho guanine nucleotide exchange factor 39 2 2
MIRT679243 LRP10 LDL receptor related protein 10 2 2
MIRT693607 SLC39A1 solute carrier family 39 member 1 2 2
MIRT695927 ZNF174 zinc finger protein 174 2 2
MIRT697987 TSPAN6 tetraspanin 6 2 2
MIRT700821 PHLDA2 pleckstrin homology like domain family A member 2 2 2
MIRT701350 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT702348 KLHL7 kelch like family member 7 2 2
MIRT703387 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT703883 ERBB2IP erbb2 interacting protein 2 2
MIRT708237 PPP1R26 protein phosphatase 1 regulatory subunit 26 2 2
MIRT708629 NUDT18 nudix hydrolase 18 2 2
MIRT708990 CABP4 calcium binding protein 4 2 2
MIRT709804 FOXE1 forkhead box E1 2 2
MIRT710203 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT710248 VAMP1 vesicle associated membrane protein 1 2 2
MIRT710281 FGF1 fibroblast growth factor 1 2 2
MIRT712992 IRGQ immunity related GTPase Q 2 2
MIRT713887 MOB3A MOB kinase activator 3A 2 2
MIRT715600 ADAM17 ADAM metallopeptidase domain 17 2 2
MIRT715639 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT715686 FRK fyn related Src family tyrosine kinase 2 2
MIRT717053 WIZ widely interspaced zinc finger motifs 2 2
MIRT717611 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT721539 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT722096 SUSD1 sushi domain containing 1 2 2
MIRT722435 HRNR hornerin 2 2
MIRT722855 NEGR1 neuronal growth regulator 1 2 2
MIRT724621 SNAP25 synaptosome associated protein 25 2 2
MIRT724777 PSG4 pregnancy specific beta-1-glycoprotein 4 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-6819 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6819-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6819-3p Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-6819-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-6819-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-6819-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6819-3p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-6819-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)

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