pre-miRNA Information
pre-miRNA hsa-mir-6511b-1   
Genomic Coordinates chr16: 2106669 - 2106753
Description Homo sapiens miR-6511b-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-6511b-2   
Genomic Coordinates chr16: 15134075 - 15134145
Description Homo sapiens miR-6511b-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6511b-3p
Sequence 53| CCUCACCACCCCUUCUGCCUGCA |75
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
993639 5 ClinVar
1196654 15 ClinVar
256998 15 ClinVar
433980 16 ClinVar
586295 18 ClinVar
433979 19 ClinVar
COSM3948368 17 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs769351879 1 dbSNP
rs1001283562 2 dbSNP
rs763611191 3 dbSNP
rs1465530682 4 dbSNP
rs1227492873 4 dbSNP
rs745502224 5 dbSNP
rs551972801 6 dbSNP
rs538162642 6 dbSNP
rs751438298 7 dbSNP
rs1285683081 7 dbSNP
rs1340898267 8 dbSNP
rs4018164 9 dbSNP
rs370568831 9 dbSNP
rs1180919709 10 dbSNP
rs1339482497 10 dbSNP
rs758216756 11 dbSNP
rs1323026290 11 dbSNP
rs1239445091 12 dbSNP
rs1310601001 12 dbSNP
rs1431093969 13 dbSNP
rs752690118 15 dbSNP
rs1371790714 15 dbSNP
rs746463189 16 dbSNP
rs1209415208 17 dbSNP
rs761022804 17 dbSNP
rs1242038386 17 dbSNP
rs370411414 18 dbSNP
rs759723934 19 dbSNP
rs1428318191 19 dbSNP
rs1416441031 20 dbSNP
rs754040914 21 dbSNP
rs776062795 21 dbSNP
rs1273686335 22 dbSNP
rs1182772456 22 dbSNP
rs1472619959 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TRAF7   
Synonyms RFWD1, RNF119
Description TNF receptor associated factor 7
Transcript NM_032271   
Expression
Putative miRNA Targets on TRAF7
3'UTR of TRAF7
(miRNA target sites are highlighted)
>TRAF7|NM_032271|3'UTR
   1 CAGGATCCAGGCCAGGCTGTGGTTTCCCCTGAACCAGCCCTGGACCTTTCTGAGCCAGGCTGGCCACATGGGGTGGTCTC
  81 GGGGTTTCTGCCTGCCCCGTGGGCATAGGTGGACAGGCTCTGGCAGCCGGGCAGTGCCCTCCCCGTCCCATGCTCGGCGA
 161 GCCTCCCTCTACTCGGCACTGTCCTTGCTGCCCAGCCCCTCTCTGGGTGCCAGGTACGACGCTTGCCCCGGCCCACCCTC
 241 CATCCCCACCCTCCATCCCCACCCTAGATGGAGCGAGGGCCTTTTTACTCACCTTTTCTACCGTTTTTAGACTGTATGTA
 321 GATTTGGTTACCTCCTGGTTGAAATAAATGCTCCACAGACTGTGGCTGTGAGTGGGGACAGCTCCTCGGGACAAGGGGGC
 401 TGTGTGTGGCCTTGAGGTTGGTGTGCACAGGCACTGGCTGCTGTGAGTGGGGGGGCATGGGGCAGTTTCCTTTGGTGGAC
 481 CCCAGGACTTCGGCCCACTCCGGGGCCTCCCCTCCCTGCTAGGAGGCAACTCGTCACACCCAAGCTGCTGGCCTCCAGTC
 561 CCATCTCCCCCAACACATGTGCCCCCAAAAAGTGAGCCAGGCACCTCTGTTTCCTGCTGTTTATTGACAGCCGACGGCAG
 641 CGCCTTGCCCAGACCTCCCCTGCCCACCTGCTGGAGCCCAGCCTGTGCCGCCCTCTGAGGAGAGGCCTGGGGGGACAGCT
 721 GGGCACGTCCACTCGCAGGGAAACACGGGGTGAGACAGCAGGAAGGGGCCCTGCACGCCGGGACGCCACCTCCGCCAGCC
 801 GCCTCCACCCGCCCCACACCACAATCGCTGGTTTTCGGCATTTTTTAAATTTTTTTTTTAAGAAACGTCAAAGTTGTGCC
 881 CAACACTGTGGATCAGCAAACACGATAGAGGAGACCAGTCAGTACTTCTTGGAGGGGGCAGGAGGAGAGAGGAAAAGGGA
 961 GGGCGAGAATGACCACACAACACAGCCTTGGACCATGAGCAGAAGCGTCCGTGGGAACTCCACTGGGGTGGATGGGCTGC
1041 CTGCACAGCCCCTGGAGAGGGGGCCAGGCACACCCTCAGAGGAGCTGCAAGCCCGTGGCCTGGCCTGCTACATGCCCTGC
1121 TTCCACGTGGCTGCCACGCTGACACACCCACATTCACCAAACCCACCCGCGCCCTGGGACGCAGCCACGCCAGGAGGAGG
1201 ACACGGCCGCCGAGAGCAAGGCACAACCTCGAGTTCTTGGGGCGCAGAGAACTTAGGAGAGAAGCACGGAGGAGCCCCCG
1281 GCAGAGCACCCGCCCCCGGGCCCCAGCCTTCCACCTGTGCTAGCAGCCTGGGGCCTCCACTCTGGCCGGAGGAAGGACCG
1361 CAGGCAGACAGCCTGGGCCTCTAACAGCTTTTGTCCGGAGCTAGACTTCGTGTCCTTTCAGTTGGTAAATGGTTTTCTAT
1441 AGAATCAATAATATTTCTTTCTTTAAATATATATTTGTTAAAGTTATACCTTTTTGTTTCTCTGGGGAAATCCGCCTCAG
1521 CTCATTCCCAATAAATTAATACTCTTGATAGCTTAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acGUCCGUCU-UCCCCACCACUCc 5'
            |||| | | | ||  |||||| 
Target 5' cgCAGGGAAACACGG--GGTGAGa 3'
734 - 755 132.00 -18.50
2
miRNA  3' acGUCCGUCUUCCCCAC--CACUCc 5'
            |||||  |  || ||  ||||| 
Target 5' caCAGGC--ACTGGCTGCTGTGAGt 3'
426 - 448 121.00 -16.70
3
miRNA  3' acgucCGUCUUCCCCACCACUCc 5'
               ||| |:    ||| ||| 
Target 5' tgcctGCACAGCCCCTGGAGAGg 3'
1038 - 1060 114.00 -14.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30180389 22 COSMIC
COSN28846867 31 COSMIC
COSN31569468 34 COSMIC
COSN30176286 81 COSMIC
COSN31513380 96 COSMIC
COSN30531734 109 COSMIC
COSN31490600 113 COSMIC
COSN31578453 128 COSMIC
COSN31917869 412 COSMIC
COSN20709987 605 COSMIC
COSN31535748 633 COSMIC
COSN31550979 715 COSMIC
COSN31596414 786 COSMIC
COSN31518709 837 COSMIC
COSN31518936 860 COSMIC
COSN20078421 1007 COSMIC
COSN25930733 1021 COSMIC
COSN1184335 1210 COSMIC
COSN31482829 1237 COSMIC
COSN24421205 1281 COSMIC
COSN32062549 1348 COSMIC
COSN31487399 1410 COSMIC
COSN5176027 1421 COSMIC
COSN22865803 1452 COSMIC
COSN31585578 1458 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1292204250 2 dbSNP
rs1205344142 4 dbSNP
rs1266163210 9 dbSNP
rs1451399939 10 dbSNP
rs932053946 11 dbSNP
rs1192085945 16 dbSNP
rs371235860 22 dbSNP
rs1158745784 27 dbSNP
rs377344718 28 dbSNP
rs771300220 29 dbSNP
rs756638955 30 dbSNP
rs925242452 32 dbSNP
rs1159370888 37 dbSNP
rs1390236151 39 dbSNP
rs1417246896 40 dbSNP
rs370672855 46 dbSNP
rs754196944 47 dbSNP
rs755220352 49 dbSNP
rs779179910 51 dbSNP
rs748258746 53 dbSNP
rs367935643 56 dbSNP
rs1275482274 57 dbSNP
rs1035411638 60 dbSNP
rs1377620812 69 dbSNP
rs1477308189 70 dbSNP
rs1215167696 73 dbSNP
rs913135751 76 dbSNP
rs968089176 78 dbSNP
rs1363495980 79 dbSNP
rs375215059 81 dbSNP
rs780739314 82 dbSNP
rs376052319 90 dbSNP
rs905652325 97 dbSNP
rs1001657723 99 dbSNP
rs779474680 100 dbSNP
rs986661519 106 dbSNP
rs1393936238 117 dbSNP
rs1318788690 121 dbSNP
rs545649326 129 dbSNP
rs375408603 130 dbSNP
rs1167809965 137 dbSNP
rs1300299276 138 dbSNP
rs528319548 142 dbSNP
rs1448268611 145 dbSNP
rs542107016 146 dbSNP
rs370666417 151 dbSNP
rs1468325637 156 dbSNP
rs530479282 157 dbSNP
rs1327870481 158 dbSNP
rs550613452 159 dbSNP
rs1206219222 160 dbSNP
rs1274727943 161 dbSNP
rs1227570113 164 dbSNP
rs1340038569 167 dbSNP
rs1305540644 168 dbSNP
rs113523330 175 dbSNP
rs997731456 176 dbSNP
rs766181490 181 dbSNP
rs985446517 183 dbSNP
rs908150975 184 dbSNP
rs184220090 189 dbSNP
rs1355179601 194 dbSNP
rs373176573 198 dbSNP
rs1427915247 199 dbSNP
rs533024994 208 dbSNP
rs1450184952 209 dbSNP
rs1174855400 213 dbSNP
rs1454074288 215 dbSNP
rs896675606 218 dbSNP
rs1413250848 219 dbSNP
rs979899303 221 dbSNP
rs1232942543 222 dbSNP
rs563525153 223 dbSNP
rs1481804780 224 dbSNP
rs1045134610 228 dbSNP
rs956716078 230 dbSNP
rs903812064 231 dbSNP
rs1379774670 232 dbSNP
rs376471774 232 dbSNP
rs577719605 232 dbSNP
rs1031323746 233 dbSNP
rs1408039354 238 dbSNP
rs988127440 244 dbSNP
rs1293114040 248 dbSNP
rs546411841 249 dbSNP
rs913186684 250 dbSNP
rs1161807673 252 dbSNP
rs1420066127 259 dbSNP
rs1329473575 261 dbSNP
rs1408212601 262 dbSNP
rs1008166335 263 dbSNP
rs950006172 270 dbSNP
rs1019430568 272 dbSNP
rs567044076 274 dbSNP
rs927090899 275 dbSNP
rs1482917522 276 dbSNP
rs772388198 280 dbSNP
rs1294559451 281 dbSNP
rs895484302 285 dbSNP
rs1243640103 286 dbSNP
rs1317334377 289 dbSNP
rs1394356299 293 dbSNP
rs1048818973 294 dbSNP
rs1263270485 303 dbSNP
rs887513320 304 dbSNP
rs1004538199 311 dbSNP
rs1026777182 312 dbSNP
rs1377548907 315 dbSNP
rs1035981228 318 dbSNP
rs1487710354 319 dbSNP
rs535720267 324 dbSNP
rs759441431 332 dbSNP
rs1345020212 338 dbSNP
rs902094414 347 dbSNP
rs1157914497 352 dbSNP
rs1455374168 354 dbSNP
rs1419369839 357 dbSNP
rs998144559 359 dbSNP
rs1197862233 361 dbSNP
rs1422729306 365 dbSNP
rs549217941 366 dbSNP
rs777883683 368 dbSNP
rs1029177895 369 dbSNP
rs1188236015 371 dbSNP
rs1482998934 373 dbSNP
rs953649484 374 dbSNP
rs1267311406 376 dbSNP
rs982496779 377 dbSNP
rs1001025387 382 dbSNP
rs1032457561 383 dbSNP
rs1244072940 385 dbSNP
rs569215312 388 dbSNP
rs1164350787 389 dbSNP
rs1298344990 391 dbSNP
rs956769022 393 dbSNP
rs747054686 399 dbSNP
rs988179717 403 dbSNP
rs1319028832 404 dbSNP
rs1443580376 405 dbSNP
rs1366879784 415 dbSNP
rs1463386297 417 dbSNP
rs1163509951 418 dbSNP
rs1456927613 423 dbSNP
rs1366259166 429 dbSNP
rs908098799 432 dbSNP
rs1429120910 434 dbSNP
rs1247170767 447 dbSNP
rs917885861 448 dbSNP
rs940920253 448 dbSNP
rs918050912 449 dbSNP
rs971351484 449 dbSNP
rs149148401 450 dbSNP
rs1314593138 451 dbSNP
rs1355576846 452 dbSNP
rs927213603 455 dbSNP
rs948224802 458 dbSNP
rs1372215132 466 dbSNP
rs1323787468 473 dbSNP
rs937200464 492 dbSNP
rs903965905 493 dbSNP
rs1299443403 499 dbSNP
rs1429846075 501 dbSNP
rs936651280 502 dbSNP
rs1166675600 503 dbSNP
rs984579527 513 dbSNP
rs1378030506 515 dbSNP
rs1198416352 518 dbSNP
rs1450145243 522 dbSNP
rs1252940234 523 dbSNP
rs892476334 528 dbSNP
rs557749310 533 dbSNP
rs1273043721 534 dbSNP
rs1213707696 537 dbSNP
rs940403551 541 dbSNP
rs1208271051 548 dbSNP
rs1274704247 552 dbSNP
rs1019548258 556 dbSNP
rs899666989 557 dbSNP
rs1308704797 563 dbSNP
rs1409861672 564 dbSNP
rs1369425691 567 dbSNP
rs1306073451 569 dbSNP
rs1203678876 575 dbSNP
rs996718635 577 dbSNP
rs1035992609 578 dbSNP
rs577979185 579 dbSNP
rs1332255984 582 dbSNP
rs1283007745 588 dbSNP
rs1476919636 589 dbSNP
rs952516473 597 dbSNP
rs901479716 601 dbSNP
rs1004385554 605 dbSNP
rs933608885 605 dbSNP
rs1051143046 606 dbSNP
rs1181341290 608 dbSNP
rs959706707 609 dbSNP
rs889363455 614 dbSNP
rs1190694851 618 dbSNP
rs1254416957 619 dbSNP
rs1430488279 620 dbSNP
rs1278555793 623 dbSNP
rs992331277 624 dbSNP
rs770922152 627 dbSNP
rs918207902 632 dbSNP
rs190417881 633 dbSNP
rs1389344099 634 dbSNP
rs1285978365 635 dbSNP
rs554023423 636 dbSNP
rs775494645 637 dbSNP
rs572949267 639 dbSNP
rs142263447 642 dbSNP
rs1024992960 643 dbSNP
rs1465156345 644 dbSNP
rs913866731 668 dbSNP
rs971158947 670 dbSNP
rs1363702063 679 dbSNP
rs1409836960 681 dbSNP
rs980782152 682 dbSNP
rs1034712703 690 dbSNP
rs762936907 691 dbSNP
rs1186079398 694 dbSNP
rs984589322 698 dbSNP
rs1364935890 700 dbSNP
rs996661613 706 dbSNP
rs561930898 709 dbSNP
rs796867728 710 dbSNP
rs575632771 715 dbSNP
rs1254306814 716 dbSNP
rs376350214 718 dbSNP
rs923028948 723 dbSNP
rs1445789803 724 dbSNP
rs959696883 727 dbSNP
rs1434115300 728 dbSNP
rs1013909659 733 dbSNP
rs1025164485 735 dbSNP
rs544546595 736 dbSNP
rs1405978695 737 dbSNP
rs1050088118 740 dbSNP
rs889405425 747 dbSNP
rs774171703 748 dbSNP
rs752710140 770 dbSNP
rs1195248771 772 dbSNP
rs1053967493 777 dbSNP
rs564093492 780 dbSNP
rs1463845394 781 dbSNP
rs1245763208 783 dbSNP
rs1223376705 784 dbSNP
rs1009719478 785 dbSNP
rs532829768 786 dbSNP
rs1226524208 788 dbSNP
rs1009887658 789 dbSNP
rs1457252026 789 dbSNP
rs546671720 791 dbSNP
rs1298253705 793 dbSNP
rs35199162 794 dbSNP
rs529447044 795 dbSNP
rs1328147438 800 dbSNP
rs1033644378 801 dbSNP
rs958621662 802 dbSNP
rs796496208 806 dbSNP
rs1411735636 809 dbSNP
rs549179412 811 dbSNP
rs767147970 812 dbSNP
rs1448016289 820 dbSNP
rs971912349 827 dbSNP
rs923050277 828 dbSNP
rs1192569077 836 dbSNP
rs1299768748 837 dbSNP
rs954483137 838 dbSNP
rs1318818639 839 dbSNP
rs1036774548 841 dbSNP
rs1218659996 841 dbSNP
rs1483768963 841 dbSNP
rs1229015098 843 dbSNP
rs569177877 847 dbSNP
rs1339768600 848 dbSNP
rs1013978083 850 dbSNP
rs1367088855 850 dbSNP
rs910186896 850 dbSNP
rs1273328596 851 dbSNP
rs374752828 855 dbSNP
rs1463707423 860 dbSNP
rs905544975 863 dbSNP
rs760163393 865 dbSNP
rs1428454791 867 dbSNP
rs1033048267 868 dbSNP
rs1177171042 871 dbSNP
rs1414268536 878 dbSNP
rs958225019 879 dbSNP
rs1189121786 882 dbSNP
rs936925223 886 dbSNP
rs1215373303 887 dbSNP
rs1251960820 888 dbSNP
rs1054063252 890 dbSNP
rs1181360825 903 dbSNP
rs914143251 904 dbSNP
rs765869428 905 dbSNP
rs1046553938 912 dbSNP
rs965427476 915 dbSNP
rs538125663 919 dbSNP
rs754379753 921 dbSNP
rs921229778 922 dbSNP
rs1303967595 923 dbSNP
rs1465813264 929 dbSNP
rs932646276 934 dbSNP
rs1002257609 936 dbSNP
rs755587481 938 dbSNP
rs779599401 939 dbSNP
rs1157684998 940 dbSNP
rs888425545 940 dbSNP
rs551689675 942 dbSNP
rs1258122542 945 dbSNP
rs1471341382 945 dbSNP
rs1462674862 946 dbSNP
rs1005492525 953 dbSNP
rs984052222 953 dbSNP
rs1235588291 956 dbSNP
rs1323749623 963 dbSNP
rs549046396 965 dbSNP
rs939856036 966 dbSNP
rs1016166343 968 dbSNP
rs961930711 972 dbSNP
rs1396002177 977 dbSNP
rs1377427654 989 dbSNP
rs1323040703 992 dbSNP
rs993777798 993 dbSNP
rs1030125883 996 dbSNP
rs1388863021 1000 dbSNP
rs1436119054 1001 dbSNP
rs954622955 1003 dbSNP
rs757648138 1008 dbSNP
rs111428398 1011 dbSNP
rs1229161035 1012 dbSNP
rs533947241 1016 dbSNP
rs558063421 1021 dbSNP
rs957719621 1029 dbSNP
rs1247595182 1030 dbSNP
rs989138669 1046 dbSNP
rs758707042 1052 dbSNP
rs1266182974 1057 dbSNP
rs777987406 1060 dbSNP
rs1320905033 1061 dbSNP
rs574068108 1062 dbSNP
rs945569915 1063 dbSNP
rs151281479 1064 dbSNP
rs1296371971 1070 dbSNP
rs928124017 1075 dbSNP
rs1392239341 1078 dbSNP
rs747263513 1078 dbSNP
rs965541666 1083 dbSNP
rs1456975303 1086 dbSNP
rs1170440666 1092 dbSNP
rs1219094121 1092 dbSNP
rs1055241257 1095 dbSNP
rs555579831 1096 dbSNP
rs1435192300 1098 dbSNP
rs1483326050 1101 dbSNP
rs888519651 1103 dbSNP
rs1268337208 1104 dbSNP
rs1487558571 1105 dbSNP
rs954062631 1107 dbSNP
rs1341887628 1108 dbSNP
rs1295933807 1113 dbSNP
rs1235902215 1116 dbSNP
rs1005545092 1121 dbSNP
rs1301583869 1125 dbSNP
rs1036993616 1126 dbSNP
rs909781831 1127 dbSNP
rs1249010073 1128 dbSNP
rs1430403815 1132 dbSNP
rs575544982 1134 dbSNP
rs1467417946 1136 dbSNP
rs1378373532 1138 dbSNP
rs993395625 1139 dbSNP
rs917042380 1143 dbSNP
rs1030593388 1146 dbSNP
rs1254150867 1147 dbSNP
rs949927513 1148 dbSNP
rs954591235 1152 dbSNP
rs1007791138 1153 dbSNP
rs544507949 1162 dbSNP
rs1372987813 1164 dbSNP
rs1256205033 1167 dbSNP
rs868582376 1169 dbSNP
rs957771225 1170 dbSNP
rs564269694 1171 dbSNP
rs1054508216 1172 dbSNP
rs1450229407 1173 dbSNP
rs989146956 1174 dbSNP
rs891471879 1178 dbSNP
rs1285067566 1181 dbSNP
rs1020596149 1182 dbSNP
rs967376579 1187 dbSNP
rs1414480070 1188 dbSNP
rs982361026 1189 dbSNP
rs1042663106 1190 dbSNP
rs1276488631 1195 dbSNP
rs1190284138 1201 dbSNP
rs1443326748 1202 dbSNP
rs901338127 1203 dbSNP
rs1342551230 1205 dbSNP
rs998387852 1206 dbSNP
rs1028398353 1207 dbSNP
rs565958781 1209 dbSNP
rs954293535 1212 dbSNP
rs928189919 1215 dbSNP
rs1272300288 1216 dbSNP
rs865875492 1217 dbSNP
rs938223208 1227 dbSNP
rs1333194293 1234 dbSNP
rs990942750 1237 dbSNP
rs1391053892 1239 dbSNP
rs910011124 1239 dbSNP
rs1321496357 1240 dbSNP
rs1456757109 1243 dbSNP
rs577518738 1244 dbSNP
rs539856895 1245 dbSNP
rs1473447616 1246 dbSNP
rs551483651 1246 dbSNP
rs1471587718 1250 dbSNP
rs1182063500 1251 dbSNP
rs528630482 1252 dbSNP
rs1180526163 1255 dbSNP
rs897134980 1256 dbSNP
rs551665155 1258 dbSNP
rs1051714732 1260 dbSNP
rs1281591074 1262 dbSNP
rs890360626 1263 dbSNP
rs979931341 1264 dbSNP
rs1043186666 1272 dbSNP
rs1369232810 1274 dbSNP
rs1367160502 1275 dbSNP
rs1416310732 1275 dbSNP
rs1434730829 1276 dbSNP
rs1007432704 1280 dbSNP
rs1017409648 1281 dbSNP
rs893566279 1285 dbSNP
rs1010629519 1287 dbSNP
rs1020648704 1291 dbSNP
rs182199125 1292 dbSNP
rs982174161 1293 dbSNP
rs1035314049 1294 dbSNP
rs115022524 1298 dbSNP
rs912848897 1301 dbSNP
rs945732094 1307 dbSNP
rs1223075239 1308 dbSNP
rs1227318379 1309 dbSNP
rs1451696912 1312 dbSNP
rs1295385263 1317 dbSNP
rs1347030261 1319 dbSNP
rs1275159786 1320 dbSNP
rs1344037077 1320 dbSNP
rs1227414383 1325 dbSNP
rs1042654597 1328 dbSNP
rs1276866332 1332 dbSNP
rs1437225832 1333 dbSNP
rs1330636693 1334 dbSNP
rs542338717 1335 dbSNP
rs749026241 1346 dbSNP
rs1168279318 1348 dbSNP
rs910019515 1348 dbSNP
rs1408603932 1349 dbSNP
rs1416887418 1353 dbSNP
rs1192615311 1360 dbSNP
rs1478053215 1364 dbSNP
rs1267641629 1365 dbSNP
rs941462705 1366 dbSNP
rs972768691 1370 dbSNP
rs998335582 1374 dbSNP
rs1203511611 1377 dbSNP
rs1305576051 1379 dbSNP
rs1210218190 1382 dbSNP
rs1050326044 1391 dbSNP
rs1220097360 1395 dbSNP
rs758817740 1399 dbSNP
rs918653161 1405 dbSNP
rs1248200217 1406 dbSNP
rs1006010923 1410 dbSNP
rs145672192 1411 dbSNP
rs1361305493 1412 dbSNP
rs961353199 1413 dbSNP
rs138680218 1415 dbSNP
rs890380760 1416 dbSNP
rs943244183 1431 dbSNP
rs1038895788 1432 dbSNP
rs552006424 1437 dbSNP
rs768539963 1443 dbSNP
rs1239044347 1444 dbSNP
rs1210570580 1446 dbSNP
rs1020746752 1447 dbSNP
rs1460985271 1447 dbSNP
rs1261532998 1448 dbSNP
rs902255134 1452 dbSNP
rs1412763434 1454 dbSNP
rs913013600 1454 dbSNP
rs1222632480 1455 dbSNP
rs774292421 1458 dbSNP
rs1452378092 1461 dbSNP
rs1404855958 1464 dbSNP
rs945679818 1467 dbSNP
rs1035061371 1468 dbSNP
rs1412147424 1469 dbSNP
rs1158266797 1471 dbSNP
rs959657259 1472 dbSNP
rs1318214565 1477 dbSNP
rs1239061892 1480 dbSNP
rs772193884 1488 dbSNP
rs1353788744 1490 dbSNP
rs1012424523 1491 dbSNP
rs934197628 1492 dbSNP
rs1241504102 1493 dbSNP
rs1469349476 1496 dbSNP
rs1281563551 1497 dbSNP
rs1017076413 1498 dbSNP
rs962874949 1501 dbSNP
rs1248950760 1502 dbSNP
rs1050013762 1503 dbSNP
rs1182557088 1506 dbSNP
rs761536655 1507 dbSNP
rs1368164948 1508 dbSNP
rs889950378 1510 dbSNP
rs1166917689 1514 dbSNP
rs972866276 1515 dbSNP
rs941573327 1517 dbSNP
rs918717658 1519 dbSNP
rs571858506 1522 dbSNP
rs955603820 1524 dbSNP
rs527653004 1525 dbSNP
rs772910066 1526 dbSNP
rs897270569 1527 dbSNP
rs1311341891 1528 dbSNP
rs1338402226 1532 dbSNP
rs746974326 1533 dbSNP
rs1273361494 1534 dbSNP
rs986827024 1535 dbSNP
rs1165456556 1538 dbSNP
rs1423728693 1538 dbSNP
rs1198361771 1540 dbSNP
rs911182101 1542 dbSNP
rs1250150873 1543 dbSNP
rs1481894447 1544 dbSNP
rs1177894611 1545 dbSNP
rs1255556277 1552 dbSNP
rs1474383672 1554 dbSNP
rs1450264409 1555 dbSNP
rs943283637 1556 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_ControlA_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acguccgucuuccccaCCACUCc 5'
                          |||||| 
Target 5' ---------------gGGUGAGa 3'
1 - 8
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_ControlA_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control A
Location of target site ENST00000326181.6 | 3UTR | GGGUGAGACAGCAGGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
69 hsa-miR-6511b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059269 CELF1 CUGBP Elav-like family member 1 2 2
MIRT061287 IPO7 importin 7 2 2
MIRT115533 MAZ MYC associated zinc finger protein 2 2
MIRT345986 BIRC5 baculoviral IAP repeat containing 5 2 8
MIRT379536 HNRNPK heterogeneous nuclear ribonucleoprotein K 2 2
MIRT442491 RBBP5 RB binding protein 5, histone lysine methyltransferase complex subunit 2 8
MIRT443701 HUNK hormonally up-regulated Neu-associated kinase 2 4
MIRT459167 HSPA6 heat shock protein family A (Hsp70) member 6 2 21
MIRT497179 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT497846 GATA6 GATA binding protein 6 2 4
MIRT519625 ZNF781 zinc finger protein 781 2 2
MIRT519838 ZFP69B ZFP69 zinc finger protein B 2 4
MIRT528560 DNAAF3 dynein axonemal assembly factor 3 2 2
MIRT530718 ORMDL3 ORMDL sphingolipid biosynthesis regulator 3 2 2
MIRT530810 GPR182 G protein-coupled receptor 182 2 2
MIRT533265 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT533726 TMEM246 transmembrane protein 246 2 2
MIRT535547 P2RY2 purinergic receptor P2Y2 2 2
MIRT536019 MCUR1 mitochondrial calcium uniporter regulator 1 2 2
MIRT539494 ACTN4 actinin alpha 4 2 2
MIRT541793 MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 2 8
MIRT554509 RUNX1T1 RUNX1 translocation partner 1 2 2
MIRT558784 CEP55 centrosomal protein 55 2 2
MIRT560013 ZNF525 zinc finger protein 525 2 2
MIRT560078 ZNF195 zinc finger protein 195 2 2
MIRT570135 IL1RL2 interleukin 1 receptor like 2 2 2
MIRT570890 ZNF780A zinc finger protein 780A 2 2
MIRT607972 SNX22 sorting nexin 22 2 2
MIRT608104 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT610471 ADAMTS13 ADAM metallopeptidase with thrombospondin type 1 motif 13 2 4
MIRT611134 GGT7 gamma-glutamyltransferase 7 2 2
MIRT611448 NRIP3 nuclear receptor interacting protein 3 2 2
MIRT613019 GABPB1 GA binding protein transcription factor beta subunit 1 2 4
MIRT615753 C6 complement C6 2 2
MIRT620464 CERS6 ceramide synthase 6 2 2
MIRT632248 VPS41 VPS41, HOPS complex subunit 2 2
MIRT636099 ZDHHC22 zinc finger DHHC-type containing 22 2 2
MIRT637452 ZNF324B zinc finger protein 324B 2 2
MIRT638927 CALCOCO2 calcium binding and coiled-coil domain 2 2 2
MIRT646768 WDR3 WD repeat domain 3 2 2
MIRT652610 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT652868 TAB1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 2 2
MIRT653655 SLC27A4 solute carrier family 27 member 4 2 2
MIRT657089 JMY junction mediating and regulatory protein, p53 cofactor 2 2
MIRT657884 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 2
MIRT662919 MED18 mediator complex subunit 18 2 2
MIRT685622 C12orf49 chromosome 12 open reading frame 49 2 2
MIRT687427 NRIP1 nuclear receptor interacting protein 1 2 2
MIRT692304 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT695127 PRY2 PTPN13-like, Y-linked 2 2 2
MIRT695144 PRY PTPN13-like, Y-linked 2 2
MIRT696286 IER3IP1 immediate early response 3 interacting protein 1 2 2
MIRT699350 SLC35E1 solute carrier family 35 member E1 2 2
MIRT709901 AGO1 argonaute 1, RISC catalytic component 2 2
MIRT710877 SLC25A42 solute carrier family 25 member 42 2 2
MIRT711365 MED7 mediator complex subunit 7 2 2
MIRT711444 FRMPD3 FERM and PDZ domain containing 3 2 2
MIRT713221 RCAN2 regulator of calcineurin 2 2 2
MIRT713281 LAIR1 leukocyte associated immunoglobulin like receptor 1 2 2
MIRT714195 TRAF7 TNF receptor associated factor 7 2 2
MIRT715152 IL12B interleukin 12B 2 2
MIRT719197 CASP10 caspase 10 2 2
MIRT719469 SRF serum response factor 2 2
MIRT720197 MPP6 membrane palmitoylated protein 6 2 2
MIRT720449 SLC16A5 solute carrier family 16 member 5 2 2
MIRT720461 RAB31 RAB31, member RAS oncogene family 2 2
MIRT721646 ZNF207 zinc finger protein 207 2 2
MIRT722001 CLLU1OS chronic lymphocytic leukemia up-regulated 1 opposite strand 2 2
MIRT725521 FAM229B family with sequence similarity 229 member B 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6511b-3p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-miR-6511b-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-6511b-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-6511b-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-6511b-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-6511b-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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