miRTarBase - #MIRT714567


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pre-miRNA Information
pre-miRNA hsa-mir-3655   
Genomic Coordinates chr5: 140647844 - 140647926
Description Homo sapiens miR-3655 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3655
Sequence 1| GCUUGUCGCUGCGGUGUUGCU |21
Evidence Experimental
Experiments 454
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
1205148 20 ClinVar
COSN18432447 7 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs146400503 7 dbSNP
rs1211510736 8 dbSNP
rs1330079470 10 dbSNP
rs747265872 12 dbSNP
rs1450468780 13 dbSNP
rs749013145 14 dbSNP
rs770798087 18 dbSNP
rs139482464 20 dbSNP
rs1179617725 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol GALNT10   
Synonyms GALNACT10, PPGALNACT10, PPGANTASE10
Description polypeptide N-acetylgalactosaminyltransferase 10
Transcript NM_198321   
Expression
Putative miRNA Targets on GALNT10
3'UTR of GALNT10
(miRNA target sites are highlighted)		 
>GALNT10|NM_198321|3'UTR
   1 GCCCTCATGTCCCCTTGGCAGGCCCCCCAGGGTCTGGCACTCACTGCAGACTTCCTCTTTCAAGGGAGGCAGGGCCCCTG
  81 TGGGCACTAGGTGTAAAAGGTGCTGGCCAAATGGTTCAGGGTGAAGAGGGCTCTTGATTCAGGGGCTGGGGTCTGCCTGG
 161 TCCTTGAGCCCCTGAGTTGTGGGGGTAGGGTGAAGAGCATATCCCACAAGAGGCCCCACAGGGAGCAGAGACTGCTTTAA
 241 TCCCTGCTGACATCACGGAAAAGCAACAGAGCCTTTTCAACTTTGTCACTATGTCCCCTTGAACATTATGTGGGAGAACA
 321 CCAAGGTAGCCTAGGCCACCCAAAAGTGAGTCCTGCGAGGTTGCCCAGCCCTCAGATGGCTCTCCTACATGATGGTGCTT
 401 TAGAAACAAAGGTAAAATTTGCCTGTTTGGGGCAGCTTTTAGTATCGATGCCACTCATCTGCAGCAGAAGAGAAAGAAGT
 481 CCTCTTGGGGCTTTTTAGTTTCTGCCGTCCTGGGGGGAACATTGCAGTTACTGCACAGCTTCTGTTCTCTGTCACAACCC
 561 CAGGTGATTTGGTCCGGTCAAAGGCCATACTTGGGGCCCTAAGAGTGTTCAGTATTGAATGCTGATCAGCTGCCAGGTGA
 641 GGAGTCAGAAGAGGGAGCCCCCCTAGACATTTCTTTGCAGCTATGGACATGCGGGATATCTCCCCCTGCTCTCTGGGTAT
 721 TTGAAATGTCAATTTTAGCACTCTCCAGGCACAAGGACAGCCCAGCACCAGCTTTACAGGGCAGTGTTTCAGATGGCCCT
 801 GAGCCCACGGAAAAGGCCAGGTAGACCTCCAAACTAGAAATGCTGGCTGATTTGCCCTGATCCATGCTTCCATTTCCCTG
 881 TCTCTCTTCCCCAGGCAATTACTGGCCTCAAAAGAGGAACAGAGGTGCTGCGAGGTGCTCACCTCACAGAGTCTGGAGGC
 961 CTCCAGGATCAACTGTGGGCAAAGTGCCTGCCTCTGACCTCATCATGGTTCTAGTTCTCATACAGAACTCCAGAATTTTT
1041 AAAGAACTCTATAATTGGATTGCAAACTAGGATGCTACATAGGATTCTGGTATTCCACATCCAATATGGATTTCTAGAAT
1121 GCTGTGATTAAAGGAGCCAGCCAGGTGTAATACAGTCAAGGCAGCCCCCAGCCTAGAGACAATCTGTGAAATCCAAAGTT
1201 GGTGGTGTTGGGAAAGCAGGGGGACATGTGTCCCTCAGCTCAGCAGAGGCTGTGGTACAACATGGTCCTTGGTGAAGACC
1281 TGCACCCCTGGAACCTCCCACCATCATCACAACTGTAGTCTCATTTGCAGTGGAGAAAAGAACCCGACGTCCCACAGCCA
1361 GATATACACCCAGCTCCATGCCAGCCCTTCATGTTTACCTTTTGCTTTGTTAATTACATGTCAGACTCCTAGAGGGCCTC
1441 CAGACTAATAGGAAGCATTTCTGTAACCAACCTGCCACCCACTGATTCAGAAATGGAAATCACATTCCACAATCTATGGC
1521 TTCCACCAGCTAGCCCAGGAAATACTTGAAATCAGCATTCCAATTAGTGTTGAGTCTCTTGATTGTGTCATTTACCAATT
1601 AAATAACTGAGACCTAAGTCTGGGAACAGAGCCACGAATCTGCCTTTGAGATGCTGGCAGATCTCAAGGCCATCAATTAT
1681 TGGGGGAGGGAGGGACAAACACTCCCAATCATCCACCAGTCAGACTGAATGTGTAGCTGGCGAGGAATTACTTCCACTTC
1761 TGGCCCAGCACAAGCCCTGCTTTGGCCACCTGTCTGCAAGAGAGGCGGCCCCTGTGCTTGCAACGCTTACGTGTTGATCC
1841 CAGTGTCCTTTTCCAAATGAGTGCTGTAGCTTTAGAAGTGGCCCTCTATAGAAAGAAGTCAAAAGATGAGGCCCCTTCTA
1921 GAATCTAGGATAACAAGAGTGTTGACAGTTTGAGGAGTCGAATTGAGATTCATCATCAAAGAGCAATGCAGCGTCGTTAA
2001 AATAAAAACTGTGCCTTTTAAAAAGAAAAATGCAAATATAGAGCAAATCCCTAAACTTGAACCATTTCCTAGTGCCTTGC
2081 TAGACAAACATAAAGGGGCAGGGTTGTGGGGAGGGGAACGTTTTTGGTGGTGTGTGCAGTTCCTACTGGATGAGTGTGTG
2161 TTTCTTAATGTCTCATTTCAAGCAGGAGATGTTGGGTCTGGAGCAAGATCTGAGACTGAGATGTCCCCCAAGGGTGACAG
2241 GTCAGATTTATTTCAGTCAGTGCAAGTCACACTCCAAACTAAAGGCTGGGCAGTGCGTTTAGTCTGTGGCCTAGAAGACC
2321 TCATCAGCCCCCGAGAGGAGGCCTTGCATTACCTCACTGGGACCTGTTTGGGGGCCATCCCTGCGGTCCACCCTCTGAAC
2401 CCCCAGCATGTTTGTCCTGTTTCTCACCATTGGGTTAAGGGGTGCCGAGCACTAGCTAGACTTCCACATAGTCCCACCCC
2481 AAGTGGGCGGCAGTGTTCCTGGCATGACCAGGATTCCTGTGAAAGCAGGAGCAGCAGCAAGCCGTCCCGGGCCTGCCTTT
2561 CCCATCCTTTGGTTCTCCTTTCCAGTCTGGGTTCACACCCTGAAAAGGGATGGGTGTGTCCTCTGAGCACTCTGGCATTT
2641 GTCATTGCTGAGCCCATATCAGTAGGTCCTGGGACTTGACAAAGTATGTGGGAGGGGAAGGAAGGACAGAACTTGACTGG
2721 CTCCATTTCATGGACCAACTGATCAATTGCCAGTACTAAGCCACTCATTGTTATGGCTTCCTTTTTGAAAACCACCTGTC
2801 TCAAGGATTCAGGTTTCTGCTCACATCCCCAGCTGATGCTCAATAAAACTCAGCCAGGAGCATATGGAGATGCTGACAGC
2881 CAGGTAATGGGTGAGACTGTGGGGTCCCTTTTCCTCTAAAGCCTTTACTCTGAGGATAAGGTCACAAAGTAGGGTGTGAC
2961 TTGAAAGTATCGTGACCATGTGGCCCACCAGCAGCCTTTCCAAAGGGGAACTCCAGAGACATTTCATAATGCAAACAGCA
3041 CTGTTGCTTTAAGAACAAGGCCTTTGGAGGTGGCTAAACTTGCACGCACGTGTGTGAAAAGCCATCCCATCTTCTGCCTC
3121 CAGTTGGAGCTTTCAGCTGTTAAAACAGTCAGAAACTATTGATTCTTCCCTTTAGGAAAAAATGCTCAGGCAGAACGGGG
3201 TACATCCACAGGAGGAATCGGACGAGAGGATGTGACATTCGGTCCAGGAGAGAAAGAGCAGTTTCTGTTAAAGATGTAAC
3281 AAATGGATTTCCAAAGTCTACATGACATTCACTTTTCAAACTTCCCACCAGTTGAATTTCTTTTTTTCCTTAAGAAACAG
3361 GTGATGTCTTGGAAAACAGCTCCTTATGTCTCTCTGTGCATCTCCATTTTCCTAGTCTCTGGAGTCTCAAAAAGAGTGGC
3441 AAAGCACTTTACAGTAGTAACTGAGGAATCAGAGTCTCTGCTTCAGCGATATCTAGTTTGTACAGTTGGGTGATCTTTTG
3521 TAATTCCTAGGAGGTAATGCATTTTTAATGTTTTCTGAAGCTTTGTAAGTGTGAGAGAGGGACAAGAAGTGCAGTTCTGT
3601 TCTGGAATTCCTTATTGCTTTCAACGGACACTCTTTGTGAAAAATCCAAGTAATATTTTAGTTCAAACTTGATCTTGAGC
3681 CAAGGCCCACTGCCACCTCTGGGATGGGAGTCGGACCTACATACCAAGTGACAAGTTCACCTTAACATCTGCTTCCAGAA
3761 TGGCTTTGATTCAGCCGTGCCAGGCAACAGAACAGGGTCAGACTCCTGCTCTGTTATTGGCTTGAAGACTAGGATCCCAA
3841 AGGGGTTGGAGGCAGGGAATATTTGAAAATTCAGACTGGAATTCCAGGCCAAAAGCTCAAGACCACCAGCCTCTCCTCCT
3921 GCCTGGAAAAATAAGCCTTTGTGAAAGACTGATTTACCATGTACAATTGTGATTGTGAACGTTGTTGAGTAAACCTCCAG
4001 ACTTTCTCTAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ucguUGUGGCGUCGCUGUUCg 5'
              |:|||  ||:|||||| 
Target 5' ctacATACC-AAGTGACAAGt 3'
 3717 - 3736 144.00 -17.60
2 
miRNA  3' ucguuguggcgucgCUGUUCg 5'
                        |||||| 
Target 5' aagtgtgagagaggGACAAGa 3'
 3567 - 3587 120.00 -10.10
3 
miRNA  3' ucguuguGGCGU---CGCUGUUCg 5'
                 || ||   |:||||:| 
Target 5' agatgtcCCCCAAGGGTGACAGGt 3'
 2219 - 2242 118.00 -11.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30183388 7 COSMIC
COSN508377 33 COSMIC
COSN31482101 58 COSMIC
COSN30149924 90 COSMIC
COSN28092575 115 COSMIC
COSN9412928 124 COSMIC
COSN14790975 518 COSMIC
COSN8623652 901 COSMIC
COSN2078352 951 COSMIC
COSN5070999 1143 COSMIC
COSN8382059 1213 COSMIC
COSN14793528 1349 COSMIC
COSN9412929 1742 COSMIC
COSN14736429 1837 COSMIC
COSN31571146 2085 COSMIC
COSN8205809 2326 COSMIC
COSN32064123 2339 COSMIC
COSN20091290 2566 COSMIC
COSN14787980 2634 COSMIC
COSN21640590 2652 COSMIC
COSN21640591 2657 COSMIC
COSN19244623 2712 COSMIC
COSN4844624 2919 COSMIC
COSN21573750 2973 COSMIC
COSN16636716 3057 COSMIC
COSN15660605 3135 COSMIC
COSN6868804 3496 COSMIC
COSN197516 3636 COSMIC
COSN14748641 3982 COSMIC
rs7244 3982 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs373825540 5 dbSNP
rs1450165338 7 dbSNP
rs755987653 11 dbSNP
rs778377924 12 dbSNP
rs749805249 13 dbSNP
rs779313180 18 dbSNP
rs543441325 19 dbSNP
rs753573173 23 dbSNP
rs779831681 23 dbSNP
rs746161155 24 dbSNP
rs775525831 25 dbSNP
rs572695147 28 dbSNP
rs34754330 30 dbSNP
rs768657337 31 dbSNP
rs1403380737 32 dbSNP
rs776752047 34 dbSNP
rs763044116 37 dbSNP
rs544806581 38 dbSNP
rs375900060 46 dbSNP
rs774293410 48 dbSNP
rs182092077 51 dbSNP
rs544566295 58 dbSNP
rs1255901426 59 dbSNP
rs1210581944 62 dbSNP
rs925679091 73 dbSNP
rs1464125092 76 dbSNP
rs900733562 85 dbSNP
rs996361583 92 dbSNP
rs1049196464 106 dbSNP
rs561112016 121 dbSNP
rs1353772836 129 dbSNP
rs1312450378 130 dbSNP
rs115418821 140 dbSNP
rs1005005498 144 dbSNP
rs1287064254 147 dbSNP
rs1452954000 150 dbSNP
rs1015412587 155 dbSNP
rs971399931 161 dbSNP
rs1474046868 164 dbSNP
rs1416740364 170 dbSNP
rs1181222006 174 dbSNP
rs1429484129 181 dbSNP
rs1002811004 182 dbSNP
rs1406090062 185 dbSNP
rs1203952162 187 dbSNP
rs34338065 188 dbSNP
rs1034918001 189 dbSNP
rs185759146 196 dbSNP
rs916931823 209 dbSNP
rs915119433 210 dbSNP
rs560571655 212 dbSNP
rs532714917 220 dbSNP
rs1228357762 224 dbSNP
rs919072460 228 dbSNP
rs1328043467 229 dbSNP
rs1293175649 231 dbSNP
rs930489143 235 dbSNP
rs1048938629 237 dbSNP
rs1395104429 242 dbSNP
rs889180474 252 dbSNP
rs1419349715 254 dbSNP
rs552821970 257 dbSNP
rs747294097 258 dbSNP
rs1463185829 270 dbSNP
rs1040742242 292 dbSNP
rs1375208718 292 dbSNP
rs944374292 303 dbSNP
rs1362846794 314 dbSNP
rs1446265753 317 dbSNP
rs1284198314 321 dbSNP
rs1195977870 335 dbSNP
rs901883473 336 dbSNP
rs1040035869 342 dbSNP
rs888979 344 dbSNP
rs1021191250 350 dbSNP
rs1196673837 353 dbSNP
rs6895758 356 dbSNP
rs1000967440 357 dbSNP
rs755405245 358 dbSNP
rs1371405189 365 dbSNP
rs1305537014 369 dbSNP
rs1049772736 376 dbSNP
rs1369680881 385 dbSNP
rs746369133 389 dbSNP
rs887983681 390 dbSNP
rs940839498 398 dbSNP
rs1036472192 413 dbSNP
rs907273204 422 dbSNP
rs1176141459 425 dbSNP
rs1453109956 431 dbSNP
rs1002842113 435 dbSNP
rs1182587210 437 dbSNP
rs1034278369 440 dbSNP
rs1195380271 443 dbSNP
rs190960147 448 dbSNP
rs1282184263 450 dbSNP
rs958668884 463 dbSNP
rs1347021106 473 dbSNP
rs567140385 483 dbSNP
rs1279680179 491 dbSNP
rs991286805 492 dbSNP
rs916896849 499 dbSNP
rs971107753 506 dbSNP
rs972376001 507 dbSNP
rs769357496 508 dbSNP
rs754560352 509 dbSNP
rs763021374 513 dbSNP
rs967931311 514 dbSNP
rs978308104 517 dbSNP
rs3776996 518 dbSNP
rs965754106 521 dbSNP
rs975750239 522 dbSNP
rs1473722330 523 dbSNP
rs1176646654 539 dbSNP
rs1378574920 540 dbSNP
rs1208436337 546 dbSNP
rs1048886898 550 dbSNP
rs1284875848 552 dbSNP
rs1225335809 555 dbSNP
rs910393729 558 dbSNP
rs1278439823 567 dbSNP
rs985087575 569 dbSNP
rs943446884 570 dbSNP
rs183099425 573 dbSNP
rs3776997 576 dbSNP
rs768251241 577 dbSNP
rs1382973636 582 dbSNP
rs538410606 589 dbSNP
rs1360062860 593 dbSNP
rs1009541887 595 dbSNP
rs1420322065 603 dbSNP
rs774235712 608 dbSNP
rs1472351080 613 dbSNP
rs558350876 616 dbSNP
rs1329826278 621 dbSNP
rs371957386 628 dbSNP
rs1217945613 633 dbSNP
rs186660562 638 dbSNP
rs879156669 639 dbSNP
rs1213790067 654 dbSNP
rs1336238815 655 dbSNP
rs1291067027 656 dbSNP
rs3836868 658 dbSNP
rs397814355 658 dbSNP
rs894505625 658 dbSNP
rs544171412 659 dbSNP
rs1011973758 663 dbSNP
rs761556307 669 dbSNP
rs1462060542 679 dbSNP
rs1396712754 690 dbSNP
rs903743112 691 dbSNP
rs191203253 693 dbSNP
rs1279090905 697 dbSNP
rs1030802436 702 dbSNP
rs1188021230 709 dbSNP
rs1474274542 711 dbSNP
rs1443887345 717 dbSNP
rs1194106524 726 dbSNP
rs1013061860 728 dbSNP
rs1196675165 732 dbSNP
rs1469433758 734 dbSNP
rs1024085167 738 dbSNP
rs138757159 740 dbSNP
rs1028731820 742 dbSNP
rs7710430 746 dbSNP
rs560539069 747 dbSNP
rs1340431983 749 dbSNP
rs984839099 749 dbSNP
rs1477176235 752 dbSNP
rs1172173558 761 dbSNP
rs3822711 764 dbSNP
rs1323935505 773 dbSNP
rs940904774 780 dbSNP
rs1355357406 786 dbSNP
rs1172747317 796 dbSNP
rs1471127925 809 dbSNP
rs1169235962 810 dbSNP
rs376580130 816 dbSNP
rs984738729 820 dbSNP
rs1250644334 831 dbSNP
rs910359641 834 dbSNP
rs760687201 835 dbSNP
rs976334173 849 dbSNP
rs1201922439 857 dbSNP
rs563055483 861 dbSNP
rs915957753 865 dbSNP
rs1235718933 866 dbSNP
rs531972169 869 dbSNP
rs1299752842 874 dbSNP
rs947425582 878 dbSNP
rs1374059784 883 dbSNP
rs1043418822 894 dbSNP
rs1275005677 932 dbSNP
rs923358039 933 dbSNP
rs182527619 936 dbSNP
rs568736890 943 dbSNP
rs1436560708 949 dbSNP
rs868377024 962 dbSNP
rs1042337021 967 dbSNP
rs1052341942 976 dbSNP
rs114758227 978 dbSNP
rs936921103 982 dbSNP
rs997330069 985 dbSNP
rs1200407540 992 dbSNP
rs1055325714 996 dbSNP
rs1252793444 1006 dbSNP
rs1482506045 1007 dbSNP
rs1251608433 1008 dbSNP
rs1163718200 1009 dbSNP
rs1486834167 1010 dbSNP
rs1449870919 1024 dbSNP
rs1209955664 1026 dbSNP
rs765414443 1045 dbSNP
rs895288803 1055 dbSNP
rs78352901 1061 dbSNP
rs1025581884 1067 dbSNP
rs142764832 1069 dbSNP
rs530892645 1077 dbSNP
rs747095254 1080 dbSNP
rs1399712801 1083 dbSNP
rs1191914573 1085 dbSNP
rs961730360 1094 dbSNP
rs972319349 1096 dbSNP
rs1156283722 1105 dbSNP
rs866398593 1107 dbSNP
rs928872710 1109 dbSNP
rs1466621079 1139 dbSNP
rs1418157575 1158 dbSNP
rs1170103850 1164 dbSNP
rs558272953 1182 dbSNP
rs1476396347 1188 dbSNP
rs769663844 1191 dbSNP
rs960216047 1203 dbSNP
rs1025977019 1208 dbSNP
rs1323867920 1208 dbSNP
rs951717090 1211 dbSNP
rs1397967769 1218 dbSNP
rs1328527372 1219 dbSNP
rs116156592 1228 dbSNP
rs1340855606 1236 dbSNP
rs1338544126 1238 dbSNP
rs1043145313 1242 dbSNP
rs924638387 1248 dbSNP
rs934635231 1249 dbSNP
rs1318413235 1251 dbSNP
rs567473784 1251 dbSNP
rs1456250950 1261 dbSNP
rs1263547141 1264 dbSNP
rs1017491948 1268 dbSNP
rs1456063252 1269 dbSNP
rs1187257082 1280 dbSNP
rs1429436496 1282 dbSNP
rs901735728 1284 dbSNP
rs1187154328 1286 dbSNP
rs997363308 1288 dbSNP
rs1050650590 1304 dbSNP
rs965005391 1306 dbSNP
rs3776998 1307 dbSNP
rs1490895610 1315 dbSNP
rs1016003170 1318 dbSNP
rs1265032226 1321 dbSNP
rs1227923761 1324 dbSNP
rs1308965645 1328 dbSNP
rs923107788 1332 dbSNP
rs1063283 1334 dbSNP
rs1262955394 1346 dbSNP
rs764261508 1347 dbSNP
rs3172941 1349 dbSNP
rs116652903 1352 dbSNP
rs960249661 1353 dbSNP
rs1168098448 1354 dbSNP
rs1367220913 1355 dbSNP
rs540606830 1363 dbSNP
rs1055546636 1365 dbSNP
rs895374436 1366 dbSNP
rs991623268 1370 dbSNP
rs916105034 1373 dbSNP
rs1472203149 1374 dbSNP
rs968908336 1375 dbSNP
rs1449390964 1383 dbSNP
rs1163312921 1385 dbSNP
rs1395821007 1420 dbSNP
rs1366846607 1421 dbSNP
rs1417520417 1424 dbSNP
rs1297126897 1428 dbSNP
rs144203787 1457 dbSNP
rs1383694344 1464 dbSNP
rs115064374 1471 dbSNP
rs148747376 1472 dbSNP
rs897348386 1477 dbSNP
rs1339771349 1480 dbSNP
rs1227630029 1502 dbSNP
rs546308852 1504 dbSNP
rs1348483386 1511 dbSNP
rs141452682 1515 dbSNP
rs1315847500 1517 dbSNP
rs1361629018 1521 dbSNP
rs60732724 1525 dbSNP
rs1372866772 1538 dbSNP
rs1306535484 1540 dbSNP
rs1429457261 1544 dbSNP
rs976718654 1562 dbSNP
rs114544470 1564 dbSNP
rs887540361 1567 dbSNP
rs781612245 1578 dbSNP
rs1005867255 1580 dbSNP
rs1050361889 1586 dbSNP
rs1249414945 1589 dbSNP
rs542418638 1596 dbSNP
rs1485855804 1608 dbSNP
rs1282394040 1609 dbSNP
rs1254751138 1616 dbSNP
rs1198604430 1628 dbSNP
rs750931175 1636 dbSNP
rs756552346 1637 dbSNP
rs1017691715 1640 dbSNP
rs373778569 1644 dbSNP
rs1386567210 1645 dbSNP
rs1287275810 1663 dbSNP
rs768461537 1675 dbSNP
rs1409604747 1677 dbSNP
rs941857026 1682 dbSNP
rs1336779090 1689 dbSNP
rs997877945 1691 dbSNP
rs1157738674 1700 dbSNP
rs1413258360 1708 dbSNP
rs1030163568 1709 dbSNP
rs1159200029 1711 dbSNP
rs1458845156 1717 dbSNP
rs779559990 1723 dbSNP
rs1181650087 1726 dbSNP
rs188388607 1727 dbSNP
rs1238974808 1732 dbSNP
rs1185419139 1739 dbSNP
rs547711564 1742 dbSNP
rs192637093 1743 dbSNP
rs1401173685 1758 dbSNP
rs1210086048 1759 dbSNP
rs1326372722 1763 dbSNP
rs74736763 1769 dbSNP
rs1233505666 1783 dbSNP
rs1035282453 1788 dbSNP
rs1286287814 1790 dbSNP
rs895484798 1791 dbSNP
rs748759125 1807 dbSNP
rs1319514726 1808 dbSNP
rs990796048 1811 dbSNP
rs969313751 1812 dbSNP
rs1317724940 1824 dbSNP
rs1462159112 1826 dbSNP
rs115709796 1831 dbSNP
rs184615778 1832 dbSNP
rs949652376 1835 dbSNP
rs10796 1837 dbSNP
rs1204880173 1844 dbSNP
rs1190369134 1849 dbSNP
rs1463205759 1857 dbSNP
rs918745939 1864 dbSNP
rs1245496605 1866 dbSNP
rs1213970058 1867 dbSNP
rs930101238 1868 dbSNP
rs1048613381 1871 dbSNP
rs1287239828 1883 dbSNP
rs887486439 1884 dbSNP
rs150847499 1890 dbSNP
rs922635468 1891 dbSNP
rs1356013545 1896 dbSNP
rs1177436346 1905 dbSNP
rs767144964 1906 dbSNP
rs1038690841 1912 dbSNP
rs1319938900 1912 dbSNP
rs1351867110 1912 dbSNP
rs1420523287 1918 dbSNP
rs749951267 1922 dbSNP
rs1404565428 1923 dbSNP
rs1419947615 1924 dbSNP
rs1170479528 1925 dbSNP
rs1447544033 1930 dbSNP
rs1389064659 1932 dbSNP
rs986477155 1932 dbSNP
rs1489154285 1935 dbSNP
rs900207358 1940 dbSNP
rs568191777 1952 dbSNP
rs534067325 1959 dbSNP
rs1275793603 1961 dbSNP
rs775167703 1964 dbSNP
rs1340633946 1976 dbSNP
rs1297454028 1977 dbSNP
rs762849431 1993 dbSNP
rs865917507 1994 dbSNP
rs1330796289 1996 dbSNP
rs140128775 1997 dbSNP
rs1032137139 2004 dbSNP
rs1299397853 2005 dbSNP
rs145554789 2005 dbSNP
rs897583818 2009 dbSNP
rs755716635 2010 dbSNP
rs187398816 2011 dbSNP
rs539842298 2034 dbSNP
rs916583236 2035 dbSNP
rs1265585886 2040 dbSNP
rs1056802459 2042 dbSNP
rs1198515469 2049 dbSNP
rs1251414510 2050 dbSNP
rs1470291125 2057 dbSNP
rs895517232 2060 dbSNP
rs1265634237 2072 dbSNP
rs1189108907 2073 dbSNP
rs1266209625 2077 dbSNP
rs1482238770 2081 dbSNP
rs1480677413 2083 dbSNP
rs1274568862 2091 dbSNP
rs1201274082 2096 dbSNP
rs1012564254 2098 dbSNP
rs1299238756 2103 dbSNP
rs971159115 2105 dbSNP
rs1421148765 2109 dbSNP
rs1351359487 2110 dbSNP
rs982148781 2118 dbSNP
rs73804459 2120 dbSNP
rs930215639 2121 dbSNP
rs1463578502 2126 dbSNP
rs771829708 2128 dbSNP
rs1292072939 2130 dbSNP
rs1356971840 2133 dbSNP
rs1048560390 2146 dbSNP
rs1405989229 2149 dbSNP
rs1285605889 2153 dbSNP
rs576495571 2155 dbSNP
rs1218567584 2158 dbSNP
rs956188598 2165 dbSNP
rs1251538553 2166 dbSNP
rs1296849942 2169 dbSNP
rs1182992452 2170 dbSNP
rs976868237 2171 dbSNP
rs1029734813 2173 dbSNP
rs542030260 2175 dbSNP
rs1264530766 2176 dbSNP
rs1270268711 2187 dbSNP
rs1226785193 2195 dbSNP
rs1039220448 2204 dbSNP
rs772993883 2210 dbSNP
rs1490404472 2233 dbSNP
rs1313122580 2234 dbSNP
rs1224204973 2255 dbSNP
rs1376916245 2260 dbSNP
rs1302155489 2285 dbSNP
rs192544475 2290 dbSNP
rs1260775260 2297 dbSNP
rs1390185260 2297 dbSNP
rs985451091 2298 dbSNP
rs1456350981 2305 dbSNP
rs1411746483 2308 dbSNP
rs572339180 2309 dbSNP
rs1425880150 2310 dbSNP
rs910468873 2311 dbSNP
rs1181732796 2327 dbSNP
rs541323372 2331 dbSNP
rs932950177 2333 dbSNP
rs1051394869 2334 dbSNP
rs902396950 2337 dbSNP
rs1328726783 2339 dbSNP
rs1266212291 2346 dbSNP
rs1449631464 2347 dbSNP
rs999405580 2356 dbSNP
rs185106056 2358 dbSNP
rs531940874 2359 dbSNP
rs929131334 2367 dbSNP
rs1366788854 2369 dbSNP
rs1317931389 2370 dbSNP
rs760704086 2385 dbSNP
rs868831709 2386 dbSNP
rs1024111885 2388 dbSNP
rs551772057 2390 dbSNP
rs948402613 2394 dbSNP
rs1044031748 2398 dbSNP
rs1450608113 2402 dbSNP
rs1392157063 2403 dbSNP
rs562418271 2405 dbSNP
rs368679697 2411 dbSNP
rs770945607 2411 dbSNP
rs1305115766 2412 dbSNP
rs1211844256 2415 dbSNP
rs1252490532 2418 dbSNP
rs891997171 2419 dbSNP
rs1264604828 2426 dbSNP
rs776676330 2431 dbSNP
rs982483127 2433 dbSNP
rs1295255177 2441 dbSNP
rs1227031093 2444 dbSNP
rs1025659522 2447 dbSNP
rs1007305785 2448 dbSNP
rs1384714443 2449 dbSNP
rs1389079547 2450 dbSNP
rs951603530 2468 dbSNP
rs963026715 2471 dbSNP
rs749858294 2487 dbSNP
rs1167189505 2489 dbSNP
rs984413769 2490 dbSNP
rs910035029 2495 dbSNP
rs190351258 2497 dbSNP
rs950569333 2502 dbSNP
rs548016655 2504 dbSNP
rs181031197 2510 dbSNP
rs921650728 2513 dbSNP
rs1272405311 2514 dbSNP
rs1204330382 2515 dbSNP
rs1271349732 2517 dbSNP
rs1257215934 2521 dbSNP
rs933086325 2527 dbSNP
rs1364657043 2530 dbSNP
rs1051336132 2544 dbSNP
rs147326733 2545 dbSNP
rs1352657798 2549 dbSNP
rs1403059002 2550 dbSNP
rs763172995 2550 dbSNP
rs1053653294 2551 dbSNP
rs1044534591 2564 dbSNP
rs1311431134 2568 dbSNP
rs925673983 2588 dbSNP
rs1428865082 2593 dbSNP
rs893626756 2594 dbSNP
rs1359455698 2597 dbSNP
rs1473482797 2598 dbSNP
rs750883563 2599 dbSNP
rs1053384764 2605 dbSNP
rs1023471266 2607 dbSNP
rs1487878422 2611 dbSNP
rs1216203233 2619 dbSNP
rs1243826802 2620 dbSNP
rs906578227 2624 dbSNP
rs764220020 2632 dbSNP
rs796581488 2633 dbSNP
rs2277937 2634 dbSNP
rs140982756 2635 dbSNP
rs1331703299 2654 dbSNP
rs1384689984 2657 dbSNP
rs1051225937 2663 dbSNP
rs762025530 2664 dbSNP
rs889950602 2677 dbSNP
rs1394377165 2681 dbSNP
rs1405421765 2691 dbSNP
rs1160265419 2698 dbSNP
rs984361576 2700 dbSNP
rs1458991125 2707 dbSNP
rs184228584 2713 dbSNP
rs1007010843 2715 dbSNP
rs1472980974 2732 dbSNP
rs556541864 2736 dbSNP
rs149670918 2742 dbSNP
rs868102838 2748 dbSNP
rs535927662 2750 dbSNP
rs1210259813 2751 dbSNP
rs1409761506 2763 dbSNP
rs987220043 2768 dbSNP
rs1347265883 2775 dbSNP
rs994103548 2781 dbSNP
rs73804460 2788 dbSNP
rs923589635 2794 dbSNP
rs1357425155 2805 dbSNP
rs1286523769 2808 dbSNP
rs1243246489 2821 dbSNP
rs1382180657 2822 dbSNP
rs1302722319 2827 dbSNP
rs1382963787 2828 dbSNP
rs935026741 2829 dbSNP
rs779970930 2830 dbSNP
rs1453397756 2833 dbSNP
rs1386768614 2836 dbSNP
rs1053403784 2837 dbSNP
rs555627804 2840 dbSNP
rs915103685 2844 dbSNP
rs948006339 2848 dbSNP
rs1415684439 2852 dbSNP
rs992621986 2861 dbSNP
rs1045294324 2863 dbSNP
rs1189971819 2866 dbSNP
rs906407802 2868 dbSNP
rs1286121121 2870 dbSNP
rs1393385892 2872 dbSNP
rs1241171233 2881 dbSNP
rs1221829031 2884 dbSNP
rs1452614590 2889 dbSNP
rs1292430306 2890 dbSNP
rs7721429 2891 dbSNP
rs1359383473 2895 dbSNP
rs541237646 2898 dbSNP
rs1363055652 2899 dbSNP
rs1047209118 2901 dbSNP
rs1437453821 2901 dbSNP
rs557996999 2907 dbSNP
rs1351451763 2914 dbSNP
rs1321364578 2923 dbSNP
rs1423714640 2927 dbSNP
rs1302878769 2942 dbSNP
rs935666574 2946 dbSNP
rs1243662999 2948 dbSNP
rs1447195792 2965 dbSNP
rs988441526 2968 dbSNP
rs778175010 2972 dbSNP
rs1461879585 2973 dbSNP
rs887205756 2981 dbSNP
rs1244573917 2986 dbSNP
rs577941037 2995 dbSNP
rs189943561 2997 dbSNP
rs181083404 3017 dbSNP
rs964609652 3021 dbSNP
rs1469834906 3031 dbSNP
rs1159300444 3045 dbSNP
rs1219834325 3062 dbSNP
rs1370037890 3067 dbSNP
rs997140668 3083 dbSNP
rs1404120144 3084 dbSNP
rs1350871631 3086 dbSNP
rs1030240112 3087 dbSNP
rs955589381 3090 dbSNP
rs987167958 3091 dbSNP
rs1415646794 3102 dbSNP
rs145446540 3108 dbSNP
rs1175194986 3123 dbSNP
rs1480349221 3124 dbSNP
rs1176426740 3129 dbSNP
rs994134588 3136 dbSNP
rs1479955247 3143 dbSNP
rs1232766900 3146 dbSNP
rs1454164126 3155 dbSNP
rs1210911416 3157 dbSNP
rs374278144 3161 dbSNP
rs1328716518 3162 dbSNP
rs1285989067 3176 dbSNP
rs1313961992 3188 dbSNP
rs1261564294 3197 dbSNP
rs956458847 3198 dbSNP
rs989072155 3220 dbSNP
rs541902844 3224 dbSNP
rs914948074 3225 dbSNP
rs1365299052 3226 dbSNP
rs1403255014 3228 dbSNP
rs879134004 3232 dbSNP
rs1025559374 3235 dbSNP
rs947963584 3241 dbSNP
rs1413227277 3242 dbSNP
rs1045015066 3246 dbSNP
rs1407904365 3252 dbSNP
rs1182932283 3255 dbSNP
rs1484315515 3259 dbSNP
rs1263718081 3263 dbSNP
rs1203327197 3264 dbSNP
rs1325560083 3287 dbSNP
rs1465531091 3290 dbSNP
rs1270206389 3298 dbSNP
rs561766431 3302 dbSNP
rs747521820 3303 dbSNP
rs1196622416 3307 dbSNP
rs1014159517 3314 dbSNP
rs527440447 3321 dbSNP
rs1335470231 3325 dbSNP
rs1435134571 3330 dbSNP
rs1390387884 3333 dbSNP
rs1286694245 3337 dbSNP
rs547626415 3356 dbSNP
rs1452151722 3362 dbSNP
rs1437259886 3367 dbSNP
rs750735143 3368 dbSNP
rs1182877875 3397 dbSNP
rs1166159987 3406 dbSNP
rs927775711 3407 dbSNP
rs1426048676 3437 dbSNP
rs939141650 3441 dbSNP
rs1450094898 3456 dbSNP
rs1046951808 3460 dbSNP
rs1477270373 3463 dbSNP
rs1485462015 3464 dbSNP
rs148817691 3471 dbSNP
rs756648239 3475 dbSNP
rs1005646591 3479 dbSNP
rs533241182 3482 dbSNP
rs115595825 3488 dbSNP
rs1223743763 3492 dbSNP
rs1032771060 3493 dbSNP
rs957071389 3494 dbSNP
rs988557646 3496 dbSNP
rs1366721440 3505 dbSNP
rs1293076833 3506 dbSNP
rs1381274889 3507 dbSNP
rs912937882 3512 dbSNP
rs899868873 3514 dbSNP
rs563661425 3515 dbSNP
rs997487297 3521 dbSNP
rs1364258644 3525 dbSNP
rs6867638 3536 dbSNP
rs1163443007 3547 dbSNP
rs6886795 3551 dbSNP
rs1374861959 3561 dbSNP
rs1169085305 3566 dbSNP
rs955634216 3566 dbSNP
rs754324903 3568 dbSNP
rs1395157767 3584 dbSNP
rs1031809121 3590 dbSNP
rs1038908160 3601 dbSNP
rs1291015710 3605 dbSNP
rs754508090 3611 dbSNP
rs1343728457 3615 dbSNP
rs956449440 3616 dbSNP
rs930098549 3626 dbSNP
rs142581287 3627 dbSNP
rs1283710294 3629 dbSNP
rs1344011150 3632 dbSNP
rs867063693 3633 dbSNP
rs1216738644 3634 dbSNP
rs1398795324 3652 dbSNP
rs1166255090 3653 dbSNP
rs867410161 3658 dbSNP
rs1245127525 3660 dbSNP
rs1461513060 3669 dbSNP
rs7243 3670 dbSNP
rs56966075 3675 dbSNP
rs1178832162 3678 dbSNP
rs1338899859 3692 dbSNP
rs1267876491 3697 dbSNP
rs1024243998 3704 dbSNP
rs905742649 3711 dbSNP
rs1450111885 3713 dbSNP
rs747761522 3714 dbSNP
rs1257453145 3715 dbSNP
rs1270058739 3719 dbSNP
rs939249912 3721 dbSNP
rs1229344545 3723 dbSNP
rs982576644 3742 dbSNP
rs908407614 3746 dbSNP
rs941421275 3768 dbSNP
rs1001378525 3777 dbSNP
rs17116139 3778 dbSNP
rs1338986835 3779 dbSNP
rs777735242 3781 dbSNP
rs1468410578 3782 dbSNP
rs899817936 3785 dbSNP
rs15197 3789 dbSNP
rs932639502 3791 dbSNP
rs1387888833 3803 dbSNP
rs1362007779 3805 dbSNP
rs1051551515 3806 dbSNP
rs1180985318 3812 dbSNP
rs1442562706 3814 dbSNP
rs747098061 3821 dbSNP
rs1004931027 3825 dbSNP
rs1010020539 3839 dbSNP
rs1221495952 3841 dbSNP
rs1229404391 3844 dbSNP
rs891344058 3846 dbSNP
rs1018860904 3847 dbSNP
rs999097242 3850 dbSNP
rs1423639037 3851 dbSNP
rs1031799332 3863 dbSNP
rs1238919363 3867 dbSNP
rs1341192967 3873 dbSNP
rs893329829 3880 dbSNP
rs376919764 3887 dbSNP
rs1450486152 3896 dbSNP
rs1405628887 3899 dbSNP
rs966035101 3906 dbSNP
rs1321398018 3907 dbSNP
rs1402290098 3913 dbSNP
rs577852622 3914 dbSNP
rs770825317 3926 dbSNP
rs955045407 3938 dbSNP
rs1367281929 3939 dbSNP
rs1157969031 3941 dbSNP
rs15198 3951 dbSNP
rs1397908494 3953 dbSNP
rs1022018597 3957 dbSNP
rs969564100 3958 dbSNP
rs1326930090 3961 dbSNP
rs1229462034 3962 dbSNP
rs1248277353 3968 dbSNP
rs1217487387 3970 dbSNP
rs980426999 3979 dbSNP
rs1034689580 3981 dbSNP
rs879286145 3981 dbSNP
rs7244 3982 dbSNP
rs1360828441 3988 dbSNP
rs920125829 4003 dbSNP
rs982735005 4004 dbSNP
rs1298698113 4007 dbSNP
rs185911088 4011 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_ControlA_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ucguuguggcgucgCUGUUcg 5'
                        |||||  
Target 5' ----gugagagaggGACAA-- 3'
 		1 - 15
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_ControlA_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control A
Location of target site ENST00000297107.6 | 3UTR | GUGAGAGAGGGACAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
LIHC -0.95 0.1 -1.000 0.5 3 Click to see details
KIRC -0.94 0.11 -1.000 0.5 3 Click to see details
LUSC -0.398 0.14 -0.517 0.08 9 Click to see details
KICH -0.642 0.18 -0.800 0.1 4 Click to see details
THCA 0.191 0.23 0.238 0.18 17 Click to see details
STAD 0.282 0.41 -0.500 0.33 3 Click to see details
CHOL 0.169 0.45 -0.500 0.33 3 Click to see details
BRCA -0.045 0.48 0.000 0.5 4 Click to see details
BRCA -0.045 0.48 0.000 0.5 4 Click to see details
BRCA -0.045 0.48 0.000 0.5 4 Click to see details
BRCA -0.045 0.48 0.000 0.5 4 Click to see details
BRCA -0.045 0.48 0.000 0.5 4 Click to see details
BRCA -0.045 0.48 0.000 0.5 4 Click to see details
BRCA -0.045 0.48 0.000 0.5 4 Click to see details
BRCA -0.045 0.48 0.000 0.5 4 Click to see details
32 hsa-miR-3655 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT446335 ATP5C1 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 2 2
MIRT476874 FEM1B fem-1 homolog B 2 2
MIRT500976 SPPL2A signal peptide peptidase like 2A 2 4
MIRT558681 CNEP1R1 CTD nuclear envelope phosphatase 1 regulatory subunit 1 2 2
MIRT617898 PTCHD3 patched domain containing 3 2 2
MIRT620111 HARBI1 harbinger transposase derived 1 2 2
MIRT620647 CXCL5 C-X-C motif chemokine ligand 5 2 2
MIRT630797 FAM46A family with sequence similarity 46 member A 2 2
MIRT632226 WDR37 WD repeat domain 37 2 2
MIRT638561 KCNJ10 potassium voltage-gated channel subfamily J member 10 2 2
MIRT639110 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT640352 C1orf210 chromosome 1 open reading frame 210 2 2
MIRT642520 CNTROB centrobin, centriole duplication and spindle assembly protein 2 2
MIRT642646 PTGR2 prostaglandin reductase 2 2 2
MIRT643505 ZNF28 zinc finger protein 28 2 2
MIRT645690 TBC1D13 TBC1 domain family member 13 2 2
MIRT645936 HIPK1 homeodomain interacting protein kinase 1 2 2
MIRT647643 FAIM2 Fas apoptotic inhibitory molecule 2 2 2
MIRT648513 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT649163 IQSEC1 IQ motif and Sec7 domain 1 2 2
MIRT651442 XKR4 XK related 4 2 2
MIRT654151 RPAP2 RNA polymerase II associated protein 2 2 2
MIRT657780 GLIS3 GLIS family zinc finger 3 2 2
MIRT661242 ARL17B ADP ribosylation factor like GTPase 17B 2 2
MIRT664082 METTL2B methyltransferase like 2B 2 2
MIRT671672 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT672199 F2 coagulation factor II, thrombin 2 2
MIRT693599 SLC39A1 solute carrier family 39 member 1 2 2
MIRT714567 GALNT10 polypeptide N-acetylgalactosaminyltransferase 10 2 2
MIRT721589 LRRC2 leucine rich repeat containing 2 2 2
MIRT722888 MOB3A MOB kinase activator 3A 2 2
MIRT724762 PSG4 pregnancy specific beta-1-glycoprotein 4 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3655 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-3655 Palbociclib 5330286 NSC758247 approved sensitive tissue (breast cancer)
hsa-miR-3655 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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