pre-miRNA Information
pre-miRNA hsa-mir-3120   
Genomic Coordinates chr1: 172138808 - 172138888
Description Homo sapiens miR-3120 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3120-5p
Sequence 13| CCUGUCUGUGCCUGCUGUACA |33
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 19 1 + 172138838 26449202, 27587585 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN26637643 8 COSMIC
COSN31603497 11 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs750386761 8 dbSNP
rs760725207 9 dbSNP
rs766486759 10 dbSNP
rs754055278 12 dbSNP
rs755288536 19 dbSNP
rs754726014 21 dbSNP
Putative Targets

Gene Information
Gene Symbol TERF1   
Synonyms PIN2, TRBF1, TRF, TRF1, hTRF1-AS, t-TRF1
Description telomeric repeat binding factor 1
Transcript NM_003218   
Other Transcripts NM_017489   
Expression
Putative miRNA Targets on TERF1
3'UTR of TERF1
(miRNA target sites are highlighted)
>TERF1|NM_003218|3'UTR
   1 TTGTGTTTGTAAAAGCTTGATGAAAGGACAGTTAAGTATTTTGATCACTGCATTTTGTTTGAAACTTGTGTCATTGATGT
  81 AATTTAAAACTTTTGTTTAAAGCATTACAGTATTTTTCTGTGACCATCAATTAATGAGGGTTTGTGCTACCAGAGTTAAA
 161 GCATATGCTATCATTGTATTCTTTAAGAACCTTATTTTGATAAAATGTAAATTTGTTGAACCCTGCCACATTTAGTATCC
 241 CCACCCCCAAATCCTGTTCCAATGAAAAAATTAAAACCTGATACGAAAAAAAAAAAATTCCAGTTAACCTATTTTGTGTC
 321 TGTAGGCTGACCTCAACCCTGTAACGTAACCCATTAAAATGAATTTCTTTTTTTTTAAGACAGAGTTTCTCTCTGTTGCC
 401 CAGGCTGGAGTGCAGTGGCGCAATTTCAGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCT
 481 CCTGAGTAGCTGGGATTACAGGCACACACCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGGCGGGGTTTCACCAT
 561 GCTGGTCAGGATGTTCTCCAACTCCTGACTTCATGATCCACCCACCTCGGCCTCCCAAAGTGCTGAGATTACAGACGTGA
 641 GCCACTGCGTCCTGCCTAAAATGAATTTTCTAGATGATTGAATAACAGTAGTCCTTTGATAGAAGATAATGACTTGGTTT
 721 ATGGCCTTAATATACTACTTAATTACTTAAGATGTTTATTAATAGAATGATAAATGTACAGAGTAACCTATAAGCATGAC
 801 ATACTTTTGCTTTCAGTAGTTTCATGTAAAGAAAAAAACTTGAAAATAGTAATACCTGAGTACCCATGGGAATAATAGAC
 881 ACTGGGGAGGTAGGGTGGGGAGCGGGAGCAAGAGCTGAAAAACTTACCTACTGGGGACTGTGCTCACTACCTGGGTGACA
 961 GGATCATACGTACCCCAAACCTCAACATCACACAGTATACTCAGCTAACAAACCTGCCCATGTGTTTCCTGAATCTAAAA
1041 TAAAAATCGAAATAATTTTTTTAAAAAAGAAAAAGACAATAGTATTACCCATGGGACAAAATTTGTACTATTAGCAAGAA
1121 TCATTTTGTGTCTCATTTAGAAACAATTTGACTTTTGTTCCAGTGTTTAAACTTTGACAAAAATGGTTTTGAATAGATCT
1201 TTATAACCTGATGCCATAAATACAAGATTCTCTGATACCTTCATTTAATATATCAATATTGGGCCTAAAACAGTATTCTG
1281 TAAAGCTTAAATTGGTATTAACTATGATCATCTTGATGTCTATGATAGATAATAAACAAGGTCATACATACCTTACTAAA
1361 CAATTTTGGTTTTTCACCAACATTTTATTCTTTAAAAGATTTAGACTAACAGAATTATTTAGCATTTCGAGTCATGTGCT
1441 TTATTTAGCAAGTGAGTAAAAATATTGGAATATTGAAGTATTTGCATAAAAAATCAAATGGTGGTGTTTTGTAATCTCTA
1521 TTGTATTTCCTATTAAGGTTTCATATATTACTTTCCCATTGTTCCTGAATTTGTTATCCTATATATAAACAGAAACATGG
1601 ATGAGTACCATATAC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acaUGUCGUCC---GUGUCUGUcc 5'
             ::||| ||   :||||:||  
Target 5' tgaGTAGCTGGGATTACAGGCAca 3'
483 - 506 122.00 -14.80
2
miRNA  3' acaugucguccgugUCUGUCc 5'
                        |||||| 
Target 5' tttctttttttttaAGACAGa 3'
364 - 384 120.00 -6.90
3
miRNA  3' acAUGUCGUCCGUGUCUGUcc 5'
            |:| | :  :||||||:  
Target 5' agTGCTGAGATTACAGACGtg 3'
619 - 639 115.00 -15.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30112114 17 COSMIC
COSN31585674 73 COSMIC
COSN30534967 75 COSMIC
COSN26667949 83 COSMIC
COSN30505576 103 COSMIC
COSN31482820 154 COSMIC
COSN30170192 173 COSMIC
COSN30166252 179 COSMIC
COSN14353267 182 COSMIC
COSN31575222 182 COSMIC
COSN25658840 286 COSMIC
COSN16799240 347 COSMIC
COSN24754688 933 COSMIC
COSN20471692 996 COSMIC
COSN24149623 1058 COSMIC
COSN30213886 1095 COSMIC
COSN29814485 1252 COSMIC
COSN24930747 1305 COSMIC
COSN22975856 1381 COSMIC
COSN5687768 1517 COSMIC
COSN27989079 1957 COSMIC
COSN9678559 1986 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1481315593 2 dbSNP
rs1156737513 8 dbSNP
rs775871434 11 dbSNP
rs779160985 17 dbSNP
rs938507967 21 dbSNP
rs1320366733 22 dbSNP
rs748309019 26 dbSNP
rs1348210715 27 dbSNP
rs1436324144 28 dbSNP
rs377443568 31 dbSNP
rs1274467342 33 dbSNP
rs769079362 34 dbSNP
rs772154778 35 dbSNP
rs1347979192 37 dbSNP
rs1226917442 38 dbSNP
rs776970077 39 dbSNP
rs1322950456 41 dbSNP
rs894413873 52 dbSNP
rs1006285506 54 dbSNP
rs1353236524 58 dbSNP
rs1443477446 66 dbSNP
rs574748842 70 dbSNP
rs1037404830 72 dbSNP
rs1160883198 73 dbSNP
rs1369731930 74 dbSNP
rs4320592 83 dbSNP
rs1825162 89 dbSNP
rs61632286 92 dbSNP
rs537844437 95 dbSNP
rs1351657556 99 dbSNP
rs560403491 105 dbSNP
rs1386876215 110 dbSNP
rs1437790231 123 dbSNP
rs955512840 131 dbSNP
rs4007410 134 dbSNP
rs572530486 139 dbSNP
rs1473091628 141 dbSNP
rs546071163 153 dbSNP
rs1018924870 162 dbSNP
rs1489780138 163 dbSNP
rs564717669 166 dbSNP
rs1220270097 168 dbSNP
rs964355700 171 dbSNP
rs990549751 173 dbSNP
rs914616467 174 dbSNP
rs1825161 180 dbSNP
rs1446106758 188 dbSNP
rs967379022 200 dbSNP
rs1368290682 206 dbSNP
rs1294190476 227 dbSNP
rs531996109 228 dbSNP
rs1392392677 236 dbSNP
rs1161585208 240 dbSNP
rs555669067 241 dbSNP
rs1267480116 246 dbSNP
rs879285724 247 dbSNP
rs1157444517 248 dbSNP
rs938494477 263 dbSNP
rs369062146 264 dbSNP
rs4471094 272 dbSNP
rs1268531919 281 dbSNP
rs1191134409 282 dbSNP
rs1441422782 283 dbSNP
rs1466711147 283 dbSNP
rs1184991211 285 dbSNP
rs1055658258 286 dbSNP
rs1328112583 286 dbSNP
rs879176044 286 dbSNP
rs1312563813 291 dbSNP
rs1300436586 293 dbSNP
rs1238665994 297 dbSNP
rs1438656005 299 dbSNP
rs771897401 302 dbSNP
rs144880237 309 dbSNP
rs1436064776 311 dbSNP
rs1182065043 312 dbSNP
rs1384603595 317 dbSNP
rs1410476890 323 dbSNP
rs529681027 324 dbSNP
rs1157048542 332 dbSNP
rs1459286668 333 dbSNP
rs548200027 338 dbSNP
rs1378594365 343 dbSNP
rs1175923686 346 dbSNP
rs10112752 347 dbSNP
rs1038027312 351 dbSNP
rs533925610 354 dbSNP
rs1464158589 359 dbSNP
rs897463156 361 dbSNP
rs1483428188 368 dbSNP
rs993139214 368 dbSNP
rs56828171 374 dbSNP
rs890227165 377 dbSNP
rs79247804 379 dbSNP
rs534891450 382 dbSNP
rs192242402 390 dbSNP
rs537705820 399 dbSNP
rs1325941588 401 dbSNP
rs1441639266 412 dbSNP
rs1316428758 415 dbSNP
rs556054159 420 dbSNP
rs184312104 421 dbSNP
rs1011796528 423 dbSNP
rs1433385078 425 dbSNP
rs1288697772 440 dbSNP
rs1021897134 442 dbSNP
rs868282818 455 dbSNP
rs1169789575 457 dbSNP
rs1474762262 464 dbSNP
rs1370867806 467 dbSNP
rs967348493 468 dbSNP
rs1424074919 476 dbSNP
rs1198344522 485 dbSNP
rs1280363821 492 dbSNP
rs977442354 494 dbSNP
rs1442486633 500 dbSNP
rs1483913921 506 dbSNP
rs1203905683 516 dbSNP
rs1204373203 517 dbSNP
rs535459099 525 dbSNP
rs1248997811 526 dbSNP
rs1268529883 532 dbSNP
rs1247230933 534 dbSNP
rs1341357190 543 dbSNP
rs1473828406 548 dbSNP
rs1183570346 549 dbSNP
rs1413249622 552 dbSNP
rs1377390597 553 dbSNP
rs1035761931 566 dbSNP
rs1309117980 571 dbSNP
rs1409928979 585 dbSNP
rs960182473 600 dbSNP
rs991727405 607 dbSNP
rs1403261356 609 dbSNP
rs12678406 610 dbSNP
rs1185358132 611 dbSNP
rs1306199937 614 dbSNP
rs572444895 615 dbSNP
rs1252236961 616 dbSNP
rs1181039493 621 dbSNP
rs1435959264 628 dbSNP
rs1270990251 635 dbSNP
rs187138395 637 dbSNP
rs1308604156 638 dbSNP
rs1330282149 644 dbSNP
rs1231661174 647 dbSNP
rs1230870759 649 dbSNP
rs1276247698 650 dbSNP
rs1442143249 651 dbSNP
rs1334442043 668 dbSNP
rs1324955902 672 dbSNP
rs919196602 688 dbSNP
rs558343770 692 dbSNP
rs1345212213 698 dbSNP
rs1227237870 699 dbSNP
rs1162403574 704 dbSNP
rs1271805611 747 dbSNP
rs928957826 748 dbSNP
rs1412468620 749 dbSNP
rs1206467637 757 dbSNP
rs369104429 759 dbSNP
rs1267335892 762 dbSNP
rs55875450 762 dbSNP
rs201390926 769 dbSNP
rs1469001478 788 dbSNP
rs1252418224 791 dbSNP
rs576727448 796 dbSNP
rs1331422466 797 dbSNP
rs191616496 799 dbSNP
rs1378588902 801 dbSNP
rs1449040765 803 dbSNP
rs1437773931 805 dbSNP
rs890196015 805 dbSNP
rs1369654040 806 dbSNP
rs943174707 811 dbSNP
rs6983852 818 dbSNP
rs1039197627 820 dbSNP
rs544103048 821 dbSNP
rs1392066867 825 dbSNP
rs1388832176 831 dbSNP
rs1317191562 832 dbSNP
rs899968685 832 dbSNP
rs562349853 833 dbSNP
rs1021866273 835 dbSNP
rs1453680133 836 dbSNP
rs1394578535 838 dbSNP
rs1466424104 839 dbSNP
rs529628704 839 dbSNP
rs184560933 840 dbSNP
rs1385013520 842 dbSNP
rs774336279 849 dbSNP
rs1215308185 853 dbSNP
rs1445680658 859 dbSNP
rs1281122791 867 dbSNP
rs1235701807 870 dbSNP
rs998846010 874 dbSNP
rs1035731052 877 dbSNP
rs1331500244 880 dbSNP
rs1365276356 883 dbSNP
rs572511572 889 dbSNP
rs1433857690 890 dbSNP
rs879581812 896 dbSNP
rs960314316 897 dbSNP
rs1343662749 900 dbSNP
rs991557472 903 dbSNP
rs1264352289 904 dbSNP
rs1354793476 905 dbSNP
rs1373475886 909 dbSNP
rs1023485698 913 dbSNP
rs1420282369 916 dbSNP
rs963222065 919 dbSNP
rs117652973 920 dbSNP
rs1239597091 923 dbSNP
rs1211965022 928 dbSNP
rs1485547494 930 dbSNP
rs1278886654 931 dbSNP
rs1186890908 932 dbSNP
rs1307610609 933 dbSNP
rs919838409 937 dbSNP
rs1294183525 939 dbSNP
rs560138176 948 dbSNP
rs1380812382 955 dbSNP
rs1293679815 964 dbSNP
rs148275901 966 dbSNP
rs1353312228 970 dbSNP
rs1430290501 971 dbSNP
rs1169760598 972 dbSNP
rs116675671 974 dbSNP
rs1416315351 977 dbSNP
rs570276143 981 dbSNP
rs369704892 983 dbSNP
rs1366817497 984 dbSNP
rs1255811022 986 dbSNP
rs919163593 987 dbSNP
rs929259145 988 dbSNP
rs117100340 996 dbSNP
rs987095853 998 dbSNP
rs1322991978 999 dbSNP
rs372338370 1000 dbSNP
rs1232274008 1004 dbSNP
rs1332459473 1011 dbSNP
rs1394912032 1024 dbSNP
rs1289935262 1025 dbSNP
rs561747629 1029 dbSNP
rs1372448348 1032 dbSNP
rs1296381047 1037 dbSNP
rs1440188973 1039 dbSNP
rs1351666471 1049 dbSNP
rs1165974853 1050 dbSNP
rs1318117044 1051 dbSNP
rs764465368 1056 dbSNP
rs1366829693 1060 dbSNP
rs1250517957 1063 dbSNP
rs1175972935 1064 dbSNP
rs568248791 1069 dbSNP
rs771014407 1070 dbSNP
rs1435378381 1078 dbSNP
rs1311327870 1080 dbSNP
rs535789379 1083 dbSNP
rs1247587651 1090 dbSNP
rs1466818643 1091 dbSNP
rs1266597031 1093 dbSNP
rs1239588726 1094 dbSNP
rs1328897357 1095 dbSNP
rs1220844821 1105 dbSNP
rs943041289 1108 dbSNP
rs1326603487 1110 dbSNP
rs1038756489 1123 dbSNP
rs1290847623 1125 dbSNP
rs1454683479 1130 dbSNP
rs1363557588 1131 dbSNP
rs1157603138 1136 dbSNP
rs893570471 1140 dbSNP
rs1395177756 1142 dbSNP
rs1270428770 1145 dbSNP
rs1466748619 1152 dbSNP
rs1249574074 1156 dbSNP
rs1465470533 1157 dbSNP
rs947523717 1158 dbSNP
rs1258695179 1170 dbSNP
rs1043278561 1171 dbSNP
rs1348428509 1174 dbSNP
rs1254130742 1176 dbSNP
rs1304258081 1187 dbSNP
rs1210918053 1192 dbSNP
rs376899455 1192 dbSNP
rs903430452 1195 dbSNP
rs999066975 1196 dbSNP
rs1382955845 1205 dbSNP
rs1057397947 1222 dbSNP
rs1287430092 1223 dbSNP
rs1474479571 1224 dbSNP
rs895790036 1228 dbSNP
rs1452084746 1231 dbSNP
rs1391449057 1239 dbSNP
rs1193495381 1247 dbSNP
rs1013352814 1252 dbSNP
rs1023034405 1258 dbSNP
rs1183312499 1260 dbSNP
rs1485873594 1262 dbSNP
rs1456644882 1276 dbSNP
rs1208608564 1279 dbSNP
rs1156612140 1287 dbSNP
rs1253107775 1294 dbSNP
rs1228451496 1296 dbSNP
rs1390589241 1305 dbSNP
rs963826996 1313 dbSNP
rs1293699977 1317 dbSNP
rs1417076769 1320 dbSNP
rs1356481086 1322 dbSNP
rs994622294 1323 dbSNP
rs1026143914 1325 dbSNP
rs950557660 1326 dbSNP
rs553834653 1342 dbSNP
rs1461175406 1343 dbSNP
rs987316848 1357 dbSNP
rs1475439660 1359 dbSNP
rs566076390 1368 dbSNP
rs964389514 1369 dbSNP
rs974842302 1373 dbSNP
rs539909018 1381 dbSNP
rs1252766642 1383 dbSNP
rs1196527505 1386 dbSNP
rs1397331342 1387 dbSNP
rs56346570 1389 dbSNP
rs576640110 1405 dbSNP
rs1235336532 1406 dbSNP
rs1335953569 1410 dbSNP
rs1293012790 1416 dbSNP
rs1227109336 1421 dbSNP
rs1042160386 1425 dbSNP
rs924738357 1429 dbSNP
rs140252054 1430 dbSNP
rs1057361343 1434 dbSNP
rs1461598875 1435 dbSNP
rs1416919890 1449 dbSNP
rs1209647425 1454 dbSNP
rs1254542395 1465 dbSNP
rs1484274179 1479 dbSNP
rs896081946 1498 dbSNP
rs1012909355 1499 dbSNP
rs1437358435 1499 dbSNP
rs1201041579 1502 dbSNP
rs1163061363 1503 dbSNP
rs1469031200 1507 dbSNP
rs1272949577 1511 dbSNP
rs1231916962 1515 dbSNP
rs1251186703 1517 dbSNP
rs1280691970 1523 dbSNP
rs1044826349 1524 dbSNP
rs1333507736 1526 dbSNP
rs1327270248 1531 dbSNP
rs899253953 1541 dbSNP
rs1179964639 1544 dbSNP
rs555964449 1547 dbSNP
rs1323468332 1559 dbSNP
rs1402284384 1562 dbSNP
rs1408405042 1564 dbSNP
rs1413866321 1570 dbSNP
rs752015277 1582 dbSNP
rs1378564198 1584 dbSNP
rs1026366020 1590 dbSNP
rs1174900183 1597 dbSNP
rs1375649339 1598 dbSNP
rs1467268288 1600 dbSNP
rs1252671831 1602 dbSNP
rs528945217 1606 dbSNP
rs1312896467 1622 dbSNP
rs1369429291 1627 dbSNP
rs950529578 1627 dbSNP
rs1205080499 1632 dbSNP
rs866215178 1636 dbSNP
rs1408502210 1646 dbSNP
rs945658759 1656 dbSNP
rs1234461195 1660 dbSNP
rs574245829 1661 dbSNP
rs541712433 1662 dbSNP
rs1300860011 1667 dbSNP
rs544220533 1668 dbSNP
rs1432410357 1672 dbSNP
rs1018849993 1677 dbSNP
rs1374491128 1683 dbSNP
rs1219074241 1686 dbSNP
rs1398887755 1691 dbSNP
rs1299647482 1697 dbSNP
rs925537841 1698 dbSNP
rs965021512 1710 dbSNP
rs749133674 1712 dbSNP
rs1394520267 1713 dbSNP
rs562429289 1717 dbSNP
rs967712362 1726 dbSNP
rs772165224 1729 dbSNP
rs1202912619 1731 dbSNP
rs1253964460 1741 dbSNP
rs900633245 1743 dbSNP
rs145451107 1746 dbSNP
rs1212189943 1747 dbSNP
rs1346565832 1754 dbSNP
rs56247110 1762 dbSNP
rs917502051 1768 dbSNP
rs1362139898 1772 dbSNP
rs1269223652 1781 dbSNP
rs1050892414 1786 dbSNP
rs116858147 1806 dbSNP
rs866889586 1826 dbSNP
rs1037379890 1827 dbSNP
rs899138013 1835 dbSNP
rs1427325549 1843 dbSNP
rs1374946967 1845 dbSNP
rs1173968298 1857 dbSNP
rs563815530 1883 dbSNP
rs531338442 1889 dbSNP
rs868598803 1890 dbSNP
rs1355554531 1891 dbSNP
rs549562946 1892 dbSNP
rs1167537002 1895 dbSNP
rs1477072090 1902 dbSNP
rs1260003340 1906 dbSNP
rs1189300037 1919 dbSNP
rs1047785092 1931 dbSNP
rs995207082 1932 dbSNP
rs1436406193 1936 dbSNP
rs1292100396 1941 dbSNP
rs1206092094 1958 dbSNP
rs1307551917 1961 dbSNP
rs1271908274 1963 dbSNP
rs114502214 1964 dbSNP
rs1370218741 1967 dbSNP
rs1336712022 1971 dbSNP
rs1410972126 1972 dbSNP
rs1293623707 1977 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_ControlA_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acaugucgucCGUGUCUGUCc 5'
                    || |||:| | 
Target 5' ucucucuguuGCCCAGGCUG- 3'
5 - 24
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_ControlA_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control A
Location of target site ENST00000276602.6 | 3UTR | AGUUUCUCUCUGUUGCCCAGGCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-3120-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT096972 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT442624 LOX lysyl oxidase 2 2
MIRT473438 MDM4 MDM4, p53 regulator 2 2
MIRT490011 KIFC2 kinesin family member C2 2 2
MIRT496449 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496752 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT497721 CYP1A1 cytochrome P450 family 1 subfamily A member 1 2 2
MIRT498287 PADI3 peptidyl arginine deiminase 3 2 2
MIRT503195 ACVR1B activin A receptor type 1B 2 4
MIRT504760 TEP1 telomerase associated protein 1 2 4
MIRT517810 UGDH UDP-glucose 6-dehydrogenase 2 6
MIRT519686 ZNF622 zinc finger protein 622 2 4
MIRT520263 URGCP upregulator of cell proliferation 2 2
MIRT523051 ICMT isoprenylcysteine carboxyl methyltransferase 2 2
MIRT525601 OLR1 oxidized low density lipoprotein receptor 1 2 4
MIRT526995 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT528699 TRAF3IP2 TRAF3 interacting protein 2 2 4
MIRT533142 WNT10A Wnt family member 10A 2 2
MIRT537618 ERI1 exoribonuclease 1 2 2
MIRT539707 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT539752 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT539808 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT539941 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT540424 FAM83F family with sequence similarity 83 member F 2 2
MIRT540509 CXCL10 C-X-C motif chemokine ligand 10 2 2
MIRT540720 GUF1 GUF1 homolog, GTPase 2 2
MIRT541630 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT542286 POLR3K RNA polymerase III subunit K 2 2
MIRT542456 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT542550 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT542771 PPAP2B phospholipid phosphatase 3 2 2
MIRT550085 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT551458 CARKD NAD(P)HX dehydratase 2 2
MIRT555622 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT569136 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT572328 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT574607 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT575583 Mcm8 minichromosome maintenance 8 homologous recombination repair factor 2 4
MIRT576125 Hrk harakiri, BCL2 interacting protein (contains only BH3 domain) 2 5
MIRT576657 Fam216a family with sequence similarity 216, member A 2 2
MIRT607222 ACSM2A acyl-CoA synthetase medium chain family member 2A 2 4
MIRT607292 CD300E CD300e molecule 2 6
MIRT607746 ANGPT4 angiopoietin 4 2 2
MIRT607905 SPRYD4 SPRY domain containing 4 2 2
MIRT608159 HRK harakiri, BCL2 interacting protein 2 7
MIRT608657 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT609115 ZNF703 zinc finger protein 703 2 6
MIRT610231 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT610870 NUDCD3 NudC domain containing 3 2 2
MIRT611217 MC2R melanocortin 2 receptor 2 2
MIRT614858 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT616966 LMX1A LIM homeobox transcription factor 1 alpha 2 2
MIRT617258 GLIPR1L2 GLI pathogenesis related 1 like 2 2 2
MIRT618009 SLC9A3R2 SLC9A3 regulator 2 2 2
MIRT619067 BSND barttin CLCNK type accessory beta subunit 2 4
MIRT619295 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT619348 GINM1 glycoprotein integral membrane 1 2 2
MIRT619362 CFHR5 complement factor H related 5 2 2
MIRT619541 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT619782 NRIP2 nuclear receptor interacting protein 2 2 2
MIRT619994 NPAP1 nuclear pore associated protein 1 2 2
MIRT621030 CDC14B cell division cycle 14B 2 2
MIRT622033 STAT5A signal transducer and activator of transcription 5A 2 2
MIRT622728 PITPNM3 PITPNM family member 3 2 2
MIRT623144 NAV2 neuron navigator 2 2 2
MIRT623600 IPO9 importin 9 2 2
MIRT624608 B3GALT5 beta-1,3-galactosyltransferase 5 2 2
MIRT624905 CTCFL CCCTC-binding factor like 2 2
MIRT625030 SPC24 SPC24, NDC80 kinetochore complex component 2 2
MIRT625688 MCM8 minichromosome maintenance 8 homologous recombination repair factor 2 5
MIRT626531 EMCN endomucin 2 2
MIRT627204 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT628033 LSAMP limbic system-associated membrane protein 2 2
MIRT628203 FREM2 FRAS1 related extracellular matrix protein 2 2 2
MIRT631012 LINS lines homolog 1 2 2
MIRT633195 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 2
MIRT633890 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT634023 MOB4 MOB family member 4, phocein 2 2
MIRT634416 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 2 2
MIRT636866 ARSE arylsulfatase E (chondrodysplasia punctata 1) 2 2
MIRT642527 ANKRD9 ankyrin repeat domain 9 2 2
MIRT645408 FAM110A family with sequence similarity 110 member A 2 2
MIRT645635 SYTL4 synaptotagmin like 4 2 2
MIRT646013 TNFAIP8L2 TNF alpha induced protein 8 like 2 2 2
MIRT646686 ASGR2 asialoglycoprotein receptor 2 2 2
MIRT652838 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT655156 PHF21B PHD finger protein 21B 2 2
MIRT658491 EXOC7 exocyst complex component 7 2 2
MIRT659398 CORO2A coronin 2A 2 2
MIRT666825 PRCP prolylcarboxypeptidase 2 2
MIRT666866 POU2F2 POU class 2 homeobox 2 2 2
MIRT668224 GABRA1 gamma-aminobutyric acid type A receptor alpha1 subunit 2 2
MIRT673288 PDE3A phosphodiesterase 3A 2 2
MIRT673878 KLF2 Kruppel like factor 2 2 2
MIRT681721 KCNE4 potassium voltage-gated channel subfamily E regulatory subunit 4 2 2
MIRT682406 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT684109 MCM10 minichromosome maintenance 10 replication initiation factor 2 2
MIRT684423 TUFT1 tuftelin 1 2 2
MIRT684684 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT686638 TMEM184C transmembrane protein 184C 2 2
MIRT689457 NXN nucleoredoxin 2 2
MIRT689627 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT690773 PLA2G2C phospholipase A2 group IIC 2 2
MIRT690822 SGSM2 small G protein signaling modulator 2 2 2
MIRT693669 MXRA7 matrix remodeling associated 7 2 2
MIRT695553 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT695872 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT698160 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT699933 RUFY2 RUN and FYVE domain containing 2 2 2
MIRT708639 UBE2W ubiquitin conjugating enzyme E2 W 2 2
MIRT710816 RAB11FIP4 RAB11 family interacting protein 4 2 2
MIRT711242 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT711542 MSH3 mutS homolog 3 2 2
MIRT711749 DTX1 deltex E3 ubiquitin ligase 1 2 2
MIRT712303 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT712922 RPF2 ribosome production factor 2 homolog 2 2
MIRT714027 SYDE2 synapse defective Rho GTPase homolog 2 2 2
MIRT714768 TERF1 telomeric repeat binding factor 1 2 2
MIRT714844 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 2 2
MIRT715223 NPVF neuropeptide VF precursor 2 2
MIRT716110 GMPS guanine monophosphate synthase 2 2
MIRT716174 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT716383 C6orf223 chromosome 6 open reading frame 223 2 2
MIRT716527 KSR2 kinase suppressor of ras 2 2 2
MIRT716962 P2RY6 pyrimidinergic receptor P2Y6 2 2
MIRT717605 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT717696 PTGS1 prostaglandin-endoperoxide synthase 1 2 2
MIRT721360 ENTHD1 ENTH domain containing 1 2 2
MIRT721381 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT721935 RASSF2 Ras association domain family member 2 2 2
MIRT722094 SUSD1 sushi domain containing 1 2 2
MIRT722837 C17orf102 chromosome 17 open reading frame 102 2 2
MIRT722990 TOR1A torsin family 1 member A 2 2
MIRT724174 ABCF2 ATP binding cassette subfamily F member 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3120-5p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-3120-5p Prednisone/Azathioprine/Methotrexate/Cyclophosphamide/Mycophenolate mofetil sensitive tissue (myasthenia gravis)
hsa-miR-3120-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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