pre-miRNA Information
pre-miRNA hsa-mir-6751   
Genomic Coordinates chr11: 65129916 - 65129978
Description Homo sapiens miR-6751 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6751-3p
Sequence 43| ACUGAGCCUCUCUCUCUCCAG |63
Evidence Experimental
Experiments Meta-analysis
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM6795708 8 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs749989972 2 dbSNP
rs1266150108 3 dbSNP
rs1488089412 6 dbSNP
rs1259846893 8 dbSNP
rs3802937 10 dbSNP
rs371083440 12 dbSNP
rs1264909843 13 dbSNP
rs751042478 14 dbSNP
rs757551063 19 dbSNP
Putative Targets

Gene Information
Gene Symbol CHMP3   
Synonyms CGI-149, NEDF, VPS24
Description charged multivesicular body protein 3
Transcript NM_001005753   
Other Transcripts NM_016079   
Expression
Putative miRNA Targets on CHMP3
3'UTR of CHMP3
(miRNA target sites are highlighted)
>CHMP3|NM_001005753|3'UTR
   1 GGGCTGCCTACCCCGCTGGGTGTGCACACACTCCTCTCAAGAGCTGCCATTTTATGTGTCTCTTGCACTACACCTCTGTT
  81 GTGAGGACTACCATTTTGGAGAAGGTTCTGTTTGTCTCTTTTCATTCTCTGCCCAGGTTTTGGGATCGCAAAGGGATTGT
 161 TCTTATAAAAGTGGCATAAATAAATGCATCATTTTTAGGAGTATAGACAGATATATCTTATTGTGGGGAGGGGAAAGAAA
 241 TCCATCTGCTCATGAAGCACTTCTGAAAATATAGGTGATTGCCTGAATGTCGAAGACTCTACTTTTGTCTATAAAACACT
 321 ATATAAATGAATTTTAATAAATTTTTGCTTTAGCACTTGGCCCCATTGTAGATTGCCCTGTGCAGTAAACTTTCAAGGTG
 401 TCGGCTGCCCCAGATTGCTTCATTTGCTGGGTGTGGAAAGAGTTGCTATGGCCAGGCATATGGGATTTGGAAGCTCAGCA
 481 GAAGTGACTTCTGCTCTGTGGTTGCTGCTCCCCGGCTTTCACAGACATGGTATGGCAGCCATTCTTTTATCTATTTAACC
 561 AAGAGGATGCTGGGGAATTGTGCTGCTTGTCCTGTTGGCTGGTGGCTGCATTATGTCCTGGGGTGTGCATGTGGGTCTAT
 641 TTAGAGCTTCTGTCCCTTCCTTCCCATTGCAAGTTGCACCCAGATGAGACAGCTGTAGTACTAGGTCTCTTTCACCTCTC
 721 ATTGCCTGTCCCTGCTTCGAGCTGGTTGTCTTGTGCGTGGGACATGGGCCTTCCTATCTGTGTTTTCTCAAAGTCAGGAG
 801 CTGACCAGGAGCACACTAAGGTGTGGTCATGCATCATAACCAACATTCACTCATCTGGGACATTCTTAAGATACATTTAT
 881 AAATCATTTCAGCAGTAGTACTTTGTATGTGTTGAGAGTTTACAGAGCTCTTTGACATACGCGATCTTAGTCTTTACAAA
 961 TAAGGAAAACAGCTCAGTTTGGGAAGTATCAGAGATGGGATTCAAACCCAGATCCTCTGGTCCAAGTTGTATGTGCACTG
1041 AACTAATCAGGCAGGAAAAAAGCCCAGCCACTGTCTCACAGATTGTTTTTTGTATATTGTAGCAAAATCCTGAAACAATG
1121 GGGTCCTTCCAGTCTCATCATACAAAATGGCAATCTTGGCTGGGTGCGGTGGTTCATGCCTATAATCCCAGTGCTTTACA
1201 AGGCTGAGGCAGGAGGCTCTCTTGAGAATAGGAGTTCAAGACCAGCCTGGGCAACATAGCAAGATCCTGTCTCTCCAAAA
1281 AAAAAAAAAAAAAAAAAAAAAAATTTCATTTTTGAGTCCAGAGGACCCTCCTATTACTCTTGATTTCATCTTCAGAGTGT
1361 AGTTAAAAAATTATTTTAAATAATTATTTTTTTAAATCAGTTGTAGGTTCACAGCAAAAGTGGACAAAAAGAAATTTCTC
1441 ATATATCCCCTGCCCTCACACATGCATAGCCTCCCACCACTATCAGTATCCCACACCAGAGTGGTACATTTGTTACAATC
1521 AATAAACCTCCATTGACACATCATTATCACCCAAAGTCCATAGTTTACATGAAGATTCACTCTGGTGTTGTACATTGTAT
1601 GGGCTTAGACAAATGTATGATGATATCTACAATTATAGAATCATACAGAATAGTTTCACTGCCCTAAAACTTCTCTATGC
1681 TTCACCTGTTCATCCCTTTCTTCCCTAATCCCCTGGCAACCACTTTAAAAAAAAAATTAGGTTCAGGGGGTACATGTGCA
1761 GGTAAACTCGTGACAAGGGGGTTTGTTATACAGATTATTTAGTGACCCAGGTACTAAGCCTAGTACCCAATAGTTACTTT
1841 TCTGGTCCTGTCCCTTTTCCCACCCTCCACCCTCAGGTAGGCCCCAGTATGTTATTCCTTTGTGTCCATGTTATTTCACT
1921 CCCACTTGTGAGAACATGGAATATTTGGTTTCCTGTTCCTATGTTAGTTTGTTAAGGATAATGGCCTCCAGCCCCATCCA
2001 TGTTCCTGCAAAGGACATGATCTTTCTTTGGCAACCACTTTTTACTGTCGCCATAGTTCTTCCTTTTCTAGAATGTCATA
2081 TTGGAATCATATAGTATGTAGCCTTTTCAGACTGGCTTCTTTCACTTAATAATATGCAATTAAGGTTCCTCCATGTCATT
2161 TCATGGCTTAATAGTGCATTTATTTTTAGCACTGAATAATACTCCATTGTCTAGATGAATAGTTTATCCATTCACCTATT
2241 GAAAGACTTCTTGGTGGTTTCCAAGTTTTGGCAATTATGAATAAAGCTGTTGTAAACATCTTTGTGCAGGTTTTTCTATG
2321 GGCATGTTTTTAATTCATTTGAATAAATACCAAGAGCTTCAGTGCTGGATCATAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaccucucucucUCCGAGUCa 5'
                      |||:|||| 
Target 5' aaaaaaaaaattAGGTTCAGg 3'
1727 - 1747 129.00 -10.30
2
miRNA  3' gaccucucucUCUCCGAGUCa 5'
                    | :||||:|| 
Target 5' tgtacattgtATGGGCTTAGa 3'
1589 - 1609 127.00 -9.30
3
miRNA  3' gacCUCUCUCUCUCCGAGUCa 5'
             |:||   :|| |||||| 
Target 5' tatGGGATTTGGAAGCTCAGc 3'
459 - 479 126.00 -13.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26639891 29 COSMIC
COSN31569165 34 COSMIC
COSN30518698 56 COSMIC
COSN31492554 76 COSMIC
COSN21212801 83 COSMIC
COSN31549849 147 COSMIC
COSN19227724 155 COSMIC
COSN8609738 184 COSMIC
COSN29746014 213 COSMIC
COSN22974634 539 COSMIC
COSN22022425 857 COSMIC
COSN19161694 1062 COSMIC
COSN29136310 1297 COSMIC
COSN17230769 1726 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs749586672 4 dbSNP
rs1433546591 8 dbSNP
rs941194475 14 dbSNP
rs1274153398 15 dbSNP
rs780519117 15 dbSNP
rs375928151 20 dbSNP
rs543909699 22 dbSNP
rs576083648 30 dbSNP
rs781182519 31 dbSNP
rs1433043473 33 dbSNP
rs766101389 39 dbSNP
rs757342371 40 dbSNP
rs1187618867 41 dbSNP
rs1306426417 56 dbSNP
rs1448025429 58 dbSNP
rs796402084 59 dbSNP
rs557828978 64 dbSNP
rs1167622521 65 dbSNP
rs1370785438 67 dbSNP
rs539687489 70 dbSNP
rs758832518 74 dbSNP
rs572281969 78 dbSNP
rs1387238844 90 dbSNP
rs922526477 98 dbSNP
rs377060828 101 dbSNP
rs1362816867 103 dbSNP
rs1227388865 104 dbSNP
rs1005452251 110 dbSNP
rs1308238853 112 dbSNP
rs964041979 114 dbSNP
rs558829823 115 dbSNP
rs554468555 122 dbSNP
rs1488451123 123 dbSNP
rs1214911180 127 dbSNP
rs1255412473 133 dbSNP
rs1049580359 136 dbSNP
rs932438960 147 dbSNP
rs535737761 148 dbSNP
rs752784791 154 dbSNP
rs1366109450 167 dbSNP
rs901259908 175 dbSNP
rs1266557425 196 dbSNP
rs768403205 204 dbSNP
rs1461478628 208 dbSNP
rs568055412 210 dbSNP
rs1327921055 211 dbSNP
rs1020848488 214 dbSNP
rs1434108569 223 dbSNP
rs746679410 225 dbSNP
rs1201151199 253 dbSNP
rs1216494565 254 dbSNP
rs142608982 260 dbSNP
rs537844060 272 dbSNP
rs1207904286 273 dbSNP
rs1486788052 275 dbSNP
rs3821014 276 dbSNP
rs1275666735 277 dbSNP
rs1327634011 282 dbSNP
rs936918070 291 dbSNP
rs112866802 292 dbSNP
rs1486655775 298 dbSNP
rs773101816 301 dbSNP
rs776096122 308 dbSNP
rs1255042041 312 dbSNP
rs779020418 321 dbSNP
rs1229029390 323 dbSNP
rs1166394079 324 dbSNP
rs1409666637 331 dbSNP
rs1456600514 334 dbSNP
rs1159588131 341 dbSNP
rs1328599778 342 dbSNP
rs552284760 347 dbSNP
rs970847967 348 dbSNP
rs1445494428 350 dbSNP
rs3731812 351 dbSNP
rs1378705387 356 dbSNP
rs1415494375 365 dbSNP
rs992972003 366 dbSNP
rs560362172 380 dbSNP
rs1228268714 387 dbSNP
rs1285552117 387 dbSNP
rs1319175231 388 dbSNP
rs1331954789 390 dbSNP
rs961093952 393 dbSNP
rs1485755991 395 dbSNP
rs1189479045 396 dbSNP
rs547873872 397 dbSNP
rs548481139 400 dbSNP
rs1471964332 402 dbSNP
rs3201448 403 dbSNP
rs1410067246 410 dbSNP
rs1005504534 413 dbSNP
rs886878146 415 dbSNP
rs1375079872 427 dbSNP
rs1387730525 431 dbSNP
rs1314866095 433 dbSNP
rs562119409 435 dbSNP
rs1348763392 437 dbSNP
rs1441529750 445 dbSNP
rs1047305703 448 dbSNP
rs775064896 454 dbSNP
rs1376091123 457 dbSNP
rs1217838901 462 dbSNP
rs933819809 473 dbSNP
rs1321837538 479 dbSNP
rs1300969937 486 dbSNP
rs1286077941 488 dbSNP
rs1348177466 502 dbSNP
rs1456195743 508 dbSNP
rs1212633125 510 dbSNP
rs186099768 513 dbSNP
rs576020188 514 dbSNP
rs1204593961 515 dbSNP
rs1234546718 524 dbSNP
rs182935439 524 dbSNP
rs1476964571 526 dbSNP
rs1178052449 527 dbSNP
rs1478145045 528 dbSNP
rs1455405315 530 dbSNP
rs1175805615 541 dbSNP
rs975365961 553 dbSNP
rs1409464367 565 dbSNP
rs113175841 609 dbSNP
rs1356823392 619 dbSNP
rs1434875306 621 dbSNP
rs925971557 626 dbSNP
rs900988911 632 dbSNP
rs1041159485 637 dbSNP
rs978803774 639 dbSNP
rs1295024547 642 dbSNP
rs1338282129 654 dbSNP
rs1214655660 655 dbSNP
rs879749566 663 dbSNP
rs1449815993 670 dbSNP
rs1220806826 672 dbSNP
rs1253517219 683 dbSNP
rs1469704927 688 dbSNP
rs945450689 706 dbSNP
rs1388553036 709 dbSNP
rs967838078 713 dbSNP
rs538555454 716 dbSNP
rs545862882 723 dbSNP
rs992920013 726 dbSNP
rs1208032006 738 dbSNP
rs1053720736 739 dbSNP
rs936635213 755 dbSNP
rs766600394 756 dbSNP
rs1034559347 757 dbSNP
rs1318876806 759 dbSNP
rs1325525157 763 dbSNP
rs572319493 764 dbSNP
rs904837655 774 dbSNP
rs949585343 775 dbSNP
rs374513440 776 dbSNP
rs1232148324 790 dbSNP
rs1345941358 807 dbSNP
rs1274519800 815 dbSNP
rs190302870 818 dbSNP
rs771246688 830 dbSNP
rs1336771595 832 dbSNP
rs1206623696 842 dbSNP
rs1247129453 843 dbSNP
rs1447339221 844 dbSNP
rs1194212382 846 dbSNP
rs1328578461 850 dbSNP
rs1244053044 855 dbSNP
rs886824507 872 dbSNP
rs1298902340 876 dbSNP
rs1471882989 879 dbSNP
rs79542132 879 dbSNP
rs961412464 880 dbSNP
rs575077642 893 dbSNP
rs1387170746 898 dbSNP
rs1015310571 908 dbSNP
rs186699521 909 dbSNP
rs952334411 913 dbSNP
rs1414574321 918 dbSNP
rs1400988879 919 dbSNP
rs1028257450 925 dbSNP
rs996748082 928 dbSNP
rs1293323400 929 dbSNP
rs546493545 932 dbSNP
rs1476232413 936 dbSNP
rs1390553105 937 dbSNP
rs1226549799 938 dbSNP
rs901040384 940 dbSNP
rs1351212291 941 dbSNP
rs138011957 941 dbSNP
rs374232322 942 dbSNP
rs570440731 943 dbSNP
rs1187355077 945 dbSNP
rs1258260841 956 dbSNP
rs979137191 957 dbSNP
rs150384692 962 dbSNP
rs1443102280 964 dbSNP
rs946073509 971 dbSNP
rs913306613 984 dbSNP
rs1160589584 988 dbSNP
rs1198953742 991 dbSNP
rs1000832178 996 dbSNP
rs992908449 1008 dbSNP
rs1376785018 1009 dbSNP
rs1407446588 1031 dbSNP
rs960186422 1032 dbSNP
rs370821658 1035 dbSNP
rs980255449 1037 dbSNP
rs963933674 1040 dbSNP
rs140381996 1045 dbSNP
rs1273922829 1062 dbSNP
rs544329210 1074 dbSNP
rs1339369452 1075 dbSNP
rs1319624814 1078 dbSNP
rs1331701203 1079 dbSNP
rs1411279122 1081 dbSNP
rs1036947204 1085 dbSNP
rs1486733627 1090 dbSNP
rs769183419 1092 dbSNP
rs940831015 1096 dbSNP
rs951119134 1097 dbSNP
rs1370836925 1099 dbSNP
rs1184453073 1101 dbSNP
rs1025389746 1118 dbSNP
rs1376332368 1122 dbSNP
rs545269422 1137 dbSNP
rs997963255 1143 dbSNP
rs529898013 1144 dbSNP
rs1386964066 1153 dbSNP
rs1163788625 1155 dbSNP
rs1473130756 1158 dbSNP
rs562682879 1159 dbSNP
rs1397167478 1162 dbSNP
rs549110626 1167 dbSNP
rs181191936 1168 dbSNP
rs531616382 1182 dbSNP
rs1484147779 1186 dbSNP
rs904401673 1199 dbSNP
rs1304520184 1206 dbSNP
rs1350255161 1210 dbSNP
rs1225370887 1213 dbSNP
rs975361082 1215 dbSNP
rs1043021031 1228 dbSNP
rs564104354 1229 dbSNP
rs761901961 1230 dbSNP
rs1292565376 1240 dbSNP
rs1251673439 1252 dbSNP
rs774428243 1257 dbSNP
rs1356328967 1258 dbSNP
rs1057122909 1265 dbSNP
rs1426328834 1267 dbSNP
rs1169165749 1268 dbSNP
rs1281898098 1269 dbSNP
rs1443789862 1272 dbSNP
rs1350680360 1274 dbSNP
rs1307054532 1275 dbSNP
rs1463047028 1275 dbSNP
rs1407709508 1276 dbSNP
rs77044731 1277 dbSNP
rs1165302218 1278 dbSNP
rs1441384256 1278 dbSNP
rs1327593305 1280 dbSNP
rs1404684931 1280 dbSNP
rs1230702726 1281 dbSNP
rs1411600470 1281 dbSNP
rs1161505927 1282 dbSNP
rs1295086499 1288 dbSNP
rs1473625499 1289 dbSNP
rs1412899626 1290 dbSNP
rs1181734756 1291 dbSNP
rs965682035 1292 dbSNP
rs938743341 1293 dbSNP
rs927392755 1294 dbSNP
rs868072194 1295 dbSNP
rs3201487 1296 dbSNP
rs867881723 1297 dbSNP
rs1229651277 1298 dbSNP
rs1019486883 1300 dbSNP
rs1329255100 1302 dbSNP
rs983752793 1303 dbSNP
rs1166979864 1304 dbSNP
rs1215500972 1304 dbSNP
rs1253021555 1304 dbSNP
rs1260960767 1304 dbSNP
rs1275568881 1304 dbSNP
rs1288567384 1304 dbSNP
rs1291468499 1304 dbSNP
rs1315578254 1304 dbSNP
rs1343256456 1304 dbSNP
rs1362848662 1304 dbSNP
rs1383997543 1304 dbSNP
rs1419897443 1304 dbSNP
rs1452782133 1304 dbSNP
rs1461861185 1304 dbSNP
rs1491234277 1304 dbSNP
rs538290304 1304 dbSNP
rs67889930 1304 dbSNP
rs745394891 1304 dbSNP
rs750803795 1304 dbSNP
rs757578130 1304 dbSNP
rs866002969 1304 dbSNP
rs869068820 1304 dbSNP
rs1161347890 1305 dbSNP
rs1491431515 1305 dbSNP
rs956536416 1305 dbSNP
rs1032416059 1307 dbSNP
rs1287251782 1307 dbSNP
rs1226190744 1314 dbSNP
rs1346044090 1314 dbSNP
rs1369356850 1316 dbSNP
rs1421699682 1317 dbSNP
rs1311269074 1318 dbSNP
rs1025290856 1319 dbSNP
rs997865208 1322 dbSNP
rs1295715308 1328 dbSNP
rs1293875932 1329 dbSNP
rs58376522 1331 dbSNP
rs1348010971 1332 dbSNP
rs905243800 1333 dbSNP
rs28664065 1347 dbSNP
rs1458826229 1350 dbSNP
rs1208326856 1351 dbSNP
rs1279151160 1355 dbSNP
rs1485743823 1356 dbSNP
rs1212332929 1358 dbSNP
rs560631036 1360 dbSNP
rs563284394 1360 dbSNP
rs1007135572 1361 dbSNP
rs1158596891 1362 dbSNP
rs1471718327 1368 dbSNP
rs1427570803 1370 dbSNP
rs1192096069 1376 dbSNP
rs904393030 1379 dbSNP
rs1036593325 1387 dbSNP
rs1043354579 1393 dbSNP
rs781399179 1394 dbSNP
rs891731503 1396 dbSNP
rs372876671 1400 dbSNP
rs1299210300 1414 dbSNP
rs938689573 1422 dbSNP
rs1232528422 1423 dbSNP
rs1266923295 1430 dbSNP
rs1302248509 1435 dbSNP
rs1348072380 1441 dbSNP
rs909366730 1442 dbSNP
rs75976189 1450 dbSNP
rs1313558984 1457 dbSNP
rs931042275 1463 dbSNP
rs549992654 1470 dbSNP
rs1044525753 1471 dbSNP
rs920980724 1477 dbSNP
rs1218366561 1483 dbSNP
rs113655265 1486 dbSNP
rs1299634821 1496 dbSNP
rs1192713552 1498 dbSNP
rs965050085 1501 dbSNP
rs1435708035 1519 dbSNP
rs1174414080 1532 dbSNP
rs912480409 1533 dbSNP
rs1409445805 1545 dbSNP
rs909410275 1546 dbSNP
rs984090662 1548 dbSNP
rs112818829 1549 dbSNP
rs1361060963 1556 dbSNP
rs1032135601 1559 dbSNP
rs1371305539 1561 dbSNP
rs1000941113 1579 dbSNP
rs1268015594 1582 dbSNP
rs1338259852 1583 dbSNP
rs969453756 1584 dbSNP
rs923526803 1587 dbSNP
rs976376921 1588 dbSNP
rs1332509783 1592 dbSNP
rs1212875287 1593 dbSNP
rs573641591 1594 dbSNP
rs1177075389 1597 dbSNP
rs1018031556 1621 dbSNP
rs1014023157 1623 dbSNP
rs1201363710 1629 dbSNP
rs578256178 1633 dbSNP
rs896457666 1636 dbSNP
rs1137684 1637 dbSNP
rs1475131458 1639 dbSNP
rs1005131578 1644 dbSNP
rs1426447892 1649 dbSNP
rs887979395 1652 dbSNP
rs1049264797 1654 dbSNP
rs1164805959 1661 dbSNP
rs1395723778 1662 dbSNP
rs1407433615 1662 dbSNP
rs932097258 1669 dbSNP
rs968940538 1671 dbSNP
rs1279500553 1675 dbSNP
rs1353512244 1677 dbSNP
rs1186081684 1683 dbSNP
rs1273707251 1684 dbSNP
rs1358270526 1686 dbSNP
rs1203096222 1687 dbSNP
rs1282425119 1692 dbSNP
rs1039424619 1694 dbSNP
rs1216615498 1703 dbSNP
rs1265485571 1710 dbSNP
rs1021433000 1716 dbSNP
rs912209749 1726 dbSNP
rs1010496407 1727 dbSNP
rs988505527 1730 dbSNP
rs1400881768 1737 dbSNP
rs925169280 1737 dbSNP
rs935244248 1737 dbSNP
rs1373137215 1746 dbSNP
rs891677667 1747 dbSNP
rs1208981512 1748 dbSNP
rs1310133869 1749 dbSNP
rs1342117599 1750 dbSNP
rs1035571460 1759 dbSNP
rs1278684984 1762 dbSNP
rs979239274 1764 dbSNP
rs1469337554 1769 dbSNP
rs544894359 1770 dbSNP
rs757057522 1771 dbSNP
rs1364316637 1774 dbSNP
rs753673659 1777 dbSNP
rs942149651 1780 dbSNP
rs1210182560 1788 dbSNP
rs763864523 1789 dbSNP
rs992242719 1805 dbSNP
rs111434014 1806 dbSNP
rs961014404 1810 dbSNP
rs887872889 1813 dbSNP
rs1470700606 1820 dbSNP
rs1160158656 1826 dbSNP
rs1047858000 1827 dbSNP
rs1303568536 1831 dbSNP
rs541344406 1833 dbSNP
rs60391171 1835 dbSNP
rs1027884442 1837 dbSNP
rs996358271 1841 dbSNP
rs976367304 1843 dbSNP
rs900657983 1845 dbSNP
rs1328061822 1855 dbSNP
rs943673227 1859 dbSNP
rs1242035975 1864 dbSNP
rs377180984 1868 dbSNP
rs1426143172 1870 dbSNP
rs113044185 1886 dbSNP
rs1233701620 1887 dbSNP
rs985549948 1895 dbSNP
rs1256618332 1898 dbSNP
rs1347194853 1906 dbSNP
rs1194631226 1909 dbSNP
rs1250432175 1914 dbSNP
rs1458502018 1923 dbSNP
rs1180827375 1934 dbSNP
rs112655248 1936 dbSNP
rs1052116585 1937 dbSNP
rs934959830 1941 dbSNP
rs1378899827 1942 dbSNP
rs1180823517 1945 dbSNP
rs1482050943 1955 dbSNP
rs148305410 1968 dbSNP
rs1448727648 1974 dbSNP
rs988620680 1977 dbSNP
rs1323599127 1981 dbSNP
rs1205541849 1982 dbSNP
rs955910427 1984 dbSNP
rs1035563013 1986 dbSNP
rs1002773127 1993 dbSNP
rs1440511212 1994 dbSNP
rs905853779 2002 dbSNP
rs1225321965 2013 dbSNP
rs756235319 2013 dbSNP
rs1022941335 2015 dbSNP
rs1251246057 2024 dbSNP
rs1319160704 2030 dbSNP
rs1200935857 2033 dbSNP
rs1006643044 2036 dbSNP
rs1246898670 2049 dbSNP
rs887828393 2050 dbSNP
rs1313509799 2057 dbSNP
rs879864652 2061 dbSNP
rs769443806 2065 dbSNP
rs1426234340 2081 dbSNP
rs1353753982 2088 dbSNP
rs960829779 2089 dbSNP
rs1162679160 2092 dbSNP
rs1015382956 2094 dbSNP
rs1369911595 2097 dbSNP
rs1461767346 2097 dbSNP
rs983469162 2101 dbSNP
rs1294881497 2117 dbSNP
rs929454841 2135 dbSNP
rs1341182764 2139 dbSNP
rs902043300 2140 dbSNP
rs1410762735 2145 dbSNP
rs1370329611 2146 dbSNP
rs1222695766 2149 dbSNP
rs1296866528 2153 dbSNP
rs951995782 2154 dbSNP
rs1142029 2155 dbSNP
rs566496605 2167 dbSNP
rs554642224 2171 dbSNP
rs1266851070 2175 dbSNP
rs536094266 2191 dbSNP
rs185910034 2192 dbSNP
rs943579968 2203 dbSNP
rs1263334351 2204 dbSNP
rs1163408731 2212 dbSNP
rs910805959 2216 dbSNP
rs1270838740 2220 dbSNP
rs575022259 2227 dbSNP
rs550474995 2231 dbSNP
rs532230922 2235 dbSNP
rs1230963329 2239 dbSNP
rs543231546 2248 dbSNP
rs947042589 2253 dbSNP
rs1413637207 2265 dbSNP
rs996409695 2280 dbSNP
rs574204304 2281 dbSNP
rs1351856131 2285 dbSNP
rs1182454456 2289 dbSNP
rs759079634 2291 dbSNP
rs1288476503 2299 dbSNP
rs1361323861 2307 dbSNP
rs1311605131 2318 dbSNP
rs1355309756 2319 dbSNP
rs964912841 2324 dbSNP
rs1315215580 2325 dbSNP
rs988553825 2337 dbSNP
rs1237935263 2350 dbSNP
rs570513261 2352 dbSNP
rs1019106219 2354 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_ControlA_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gaCCUCUCUCUCUCCgaguca 5'
            | ||| ||| |||      
Target 5' -aGAAGA-AGACAGGaa---- 3'
1 - 15
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_ControlA_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control A
Location of target site ENST00000263856.4 | 3UTR | AGAAGAAGACAGGAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
77 hsa-miR-6751-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT130738 GATAD2B GATA zinc finger domain containing 2B 2 4
MIRT134924 CCND2 cyclin D2 2 2
MIRT273034 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT276645 KPNA3 karyopherin subunit alpha 3 2 6
MIRT446531 OAS2 2'-5'-oligoadenylate synthetase 2 2 2
MIRT456268 TDRKH tudor and KH domain containing 2 12
MIRT494454 BTG2 BTG anti-proliferation factor 2 2 2
MIRT494965 USP46 ubiquitin specific peptidase 46 2 2
MIRT496689 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT496697 RGS11 regulator of G protein signaling 11 2 2
MIRT504376 IRF4 interferon regulatory factor 4 2 6
MIRT510980 PFN2 profilin 2 2 6
MIRT512548 MFN2 mitofusin 2 2 6
MIRT513639 TP53INP2 tumor protein p53 inducible nuclear protein 2 2 2
MIRT514016 CAMSAP1 calmodulin regulated spectrin associated protein 1 2 4
MIRT514074 MTRNR2L6 MT-RNR2-like 6 2 2
MIRT515300 C15orf38-AP3S2 C15orf38-AP3S2 readthrough 2 4
MIRT517285 AP3S2 adaptor related protein complex 3 sigma 2 subunit 2 4
MIRT519075 KCNK6 potassium two pore domain channel subfamily K member 6 2 2
MIRT520779 TCF23 transcription factor 23 2 2
MIRT522485 MFSD9 major facilitator superfamily domain containing 9 2 2
MIRT528856 PKP1 plakophilin 1 2 2
MIRT529081 PATE2 prostate and testis expressed 2 2 2
MIRT531209 PLA2G4D phospholipase A2 group IVD 2 2
MIRT533988 TAB3 TGF-beta activated kinase 1 and MAP3K7 binding protein 3 2 2
MIRT537024 GRIN2B glutamate ionotropic receptor NMDA type subunit 2B 2 2
MIRT537498 FAM168B family with sequence similarity 168 member B 2 2
MIRT553125 UBE2Z ubiquitin conjugating enzyme E2 Z 2 2
MIRT555591 PIP5K1C phosphatidylinositol-4-phosphate 5-kinase type 1 gamma 2 2
MIRT556370 LUZP1 leucine zipper protein 1 2 2
MIRT569745 C2orf71 chromosome 2 open reading frame 71 2 2
MIRT570149 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT571243 FADS6 fatty acid desaturase 6 2 2
MIRT573065 TRIB1 tribbles pseudokinase 1 2 2
MIRT575533 Map4 microtubule-associated protein 4 2 2
MIRT575777 Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b 2 2
MIRT616558 ZNF512B zinc finger protein 512B 2 2
MIRT624851 ABI2 abl interactor 2 2 2
MIRT630078 GRWD1 glutamate rich WD repeat containing 1 2 2
MIRT631479 KLHL21 kelch like family member 21 2 2
MIRT632173 CCL22 C-C motif chemokine ligand 22 2 2
MIRT638397 QSOX2 quiescin sulfhydryl oxidase 2 2 4
MIRT641192 ISG20L2 interferon stimulated exonuclease gene 20 like 2 2 2
MIRT642562 TEX9 testis expressed 9 2 2
MIRT642935 KRTAP5-9 keratin associated protein 5-9 2 2
MIRT649703 ZNF175 zinc finger protein 175 2 2
MIRT650437 CPXM2 carboxypeptidase X, M14 family member 2 2 2
MIRT652113 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT652273 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT655215 PFKM phosphofructokinase, muscle 2 2
MIRT682778 ZNF852 zinc finger protein 852 2 2
MIRT683001 MUC20 mucin 20, cell surface associated 2 2
MIRT684320 GTF3C4 general transcription factor IIIC subunit 4 2 2
MIRT689435 CYB561 cytochrome b561 2 2
MIRT693847 ZNF107 zinc finger protein 107 2 2
MIRT696715 TAX1BP3 Tax1 binding protein 3 2 2
MIRT698597 TEX261 testis expressed 261 2 2
MIRT699973 RREB1 ras responsive element binding protein 1 2 2
MIRT703310 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 2
MIRT706796 RAI1 retinoic acid induced 1 2 2
MIRT709004 CD109 CD109 molecule 2 2
MIRT709181 TBC1D10B TBC1 domain family member 10B 2 2
MIRT709835 PAQR7 progestin and adipoQ receptor family member 7 2 2
MIRT711627 CORO1C coronin 1C 2 2
MIRT712634 RNF103-CHMP3 RNF103-CHMP3 readthrough 2 2
MIRT713694 CYB5R4 cytochrome b5 reductase 4 2 2
MIRT713752 SLC9A8 solute carrier family 9 member A8 2 2
MIRT714908 CHMP3 charged multivesicular body protein 3 2 2
MIRT716371 CBLL1 Cbl proto-oncogene like 1 2 2
MIRT718303 XPOT exportin for tRNA 2 2
MIRT718713 ANKRD18A ankyrin repeat domain 18A 2 2
MIRT718740 ATP9A ATPase phospholipid transporting 9A (putative) 2 2
MIRT719441 NPTX2 neuronal pentraxin 2 2 2
MIRT720896 OTUD4 OTU deubiquitinase 4 2 2
MIRT722448 RXFP4 relaxin/insulin like family peptide receptor 4 2 2
MIRT723882 VKORC1 vitamin K epoxide reductase complex subunit 1 2 2
MIRT724586 SYNJ2BP synaptojanin 2 binding protein 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-6751 Cisplatin 5460033 NSC119875 approved sensitive Low Ovarian Cancer cell line (A2780)
hsa-mir-6751 Triptolide 107985 NSC163062 sensitive Low Ovarian Cancer cell line (A2780)

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