pre-miRNA Information
pre-miRNA hsa-mir-6509   
Genomic Coordinates chr7: 135206994 - 135207078
Description Homo sapiens miR-6509 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6509-3p
Sequence 52| UUCCACUGCCACUACCUAAUUU |73
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs778601614 1 dbSNP
rs754554776 3 dbSNP
rs767798995 3 dbSNP
rs145322812 4 dbSNP
rs773941257 5 dbSNP
rs768273593 9 dbSNP
rs984565062 12 dbSNP
rs748872915 13 dbSNP
rs774861125 14 dbSNP
rs13241975 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CYP1B1   
Synonyms ASGD6, CP1B, CYPIB1, GLC3A, P4501B1
Description cytochrome P450 family 1 subfamily B member 1
Transcript NM_000104   
Expression
Putative miRNA Targets on CYP1B1
3'UTR of CYP1B1
(miRNA target sites are highlighted)
>CYP1B1|NM_000104|3'UTR
   1 GAAGCAAGAGGCAAGCTGAAATTTTAGAAATATTCACATCTTCGGAGATGAGGAGTAAAATTCAGTTTTTTTCCAGTTCC
  81 TCTTTTGTGCTGCTTCTCAATTAGCGTTTAAGGTGAGCATAAATCAACTGTCCATCAGGTGAGGTGTGCTCCATACCCAG
 161 CGGTTCTTCATGAGTAGTGGGCTATGCAGGAGCTTCTGGGAGATTTTTTTGAGTCAAAGACTTAAAGGGCCCAATGAATT
 241 ATTATATACATACTGCATCTTGGTTATTTCTGAAGGTAGCATTCTTTGGAGTTAAAATGCACATATAGACACATACACCC
 321 AAACACTTACACCAAACTACTGAATGAAGCAGTATTTTGGTAACCAGGCCATTTTTGGTGGGAATCCAAGATTGGTCTCC
 401 CATATGCAGAAATAGACAAAAAGTATATTAAACAAAGTTTCAGAGTATATTGTTGAAGAGACAGAGACAAGTAATTTCAG
 481 TGTAAAGTGTGTGATTGAAGGTGATAAGGGAAAAGATAAAGACCAGAAATTCCCTTTTCACCTTTTCAGGAAAATAACTT
 561 AGACTCTAGTATTTATGGGTGGATTTATCCTTTTGCCTTCTGGTATACTTCCTTACTTTTAAGGATAAATCATAAAGTCA
 641 GTTGCTCAAAAAGAAATCAATAGTTGAATTAGTGAGTATAGTGGGGTTCCATGAGTTATCATGAATTTTAAAGTATGCAT
 721 TATTAAATTGTAAAACTCCAAGGTGATGTTGTACCTCTTTTGCTTGCCAAAGTACAGAATTTGAATTATCAGCAAAGAAA
 801 AAAAAAAAAGCCAGCCAAGCTTTAAATTATGTGACCATAATGTACTGATTTCAGTAAGTCTCATAGGTTAAAAAAAAAAG
 881 TCACCAAATAGTGTGAAATATATTACTTAACTGTCCGTAAGCAGTATATTAGTATTATCTTGTTCAGGAAAAGGTTGAAT
 961 AATATATGCCTTGTATAATATTGAAAATTGAAAAGTACAACTAACGCAACCAAGTGTGCTAAAAATGAGCTTGATTAAAT
1041 CAACCACCTATTTTTGACATGGAAATGAAGCAGGGTTTCTTTTCTTCACTCAAATTTTGGCGAATCTCAAAATTAGATCC
1121 TAAGATGTGTTCTTATTTTTATAACATCTTTATTGAAATTCTATTTATAATACAGAATCTTGTTTTGAAAATAACCTAAT
1201 TAATATATTAAAATTCCAAATTCATGGCATGCTTAAATTTTAACTAAATTTTAAAGCCATTCTGATTATTGAGTTCCAGT
1281 TGAAGTTAGTGGAAATCTGAACATTCTCCTGTGGAAGGCAGAGAAATCTAAGCTGTGTCTGCCCAATGAATAATGGAAAA
1361 TGCCATGAATTACCTGGATGTTCTTTTTACGAGGTGACAAGAGTTGGGGACAGAACTCCCATTACAACTGACCAAGTTTC
1441 TCTTCTAGATGATTTTTTGAAAGTTAACATTAATGCCTGCTTTTTGGAAAGTCAGAATCAGAAGATAGTCTTGGAAGCTG
1521 TTTGGAAAAGACAGTGGAGATGAGGTCAGTTGTGTTTTTTAAGATGGCAATTACTTTGGTAGCTGGGAAAGCATAAAGCT
1601 CAAATGAAATGTATGCATTCACATTTAGAAAAGTGAATTGAAGTTTCAAGTTTTAAAGTTCATTGCAATTAAACTTCCAA
1681 AGAAAGTTCTACAGTGTCCTAAGTGCTAAGTGCTTATTACATTTTATTAAGCTTTTTGGAATCTTTGTACCAAAATTTTA
1761 AAAAAGGGAGTTTTTGATAGTTGTGTGTATGTGTGTGTGGGGTGGGGGGATGGTAAGAGAAAAGAGAGAAACACTGAAAA
1841 GAAGGAAAGATGGTTAAACATTTTCCCACTCATTCTGAATTAATTAATTTGGAGCACAAAATTCAAAGCATGGACATTTA
1921 GAAGAAAGATGTTTGGCGTAGCAGAGTTAAATCTCAAATAGGCTATTAAAAAAGTCTACAACATAGCAGATCTGTTTTGT
2001 GGTTTGGAATATTAAAAAACTTCATGTAATTTTATTTTAAAATTTCATAGCTGTACTTCTTGAATATAAAAAATCATGCC
2081 AGTATTTTTAAAGGCATTAGAGTCAACTACACAAAGCAGGCTTGCCCAGTACATTTAAATTTTTTGGCACTTGCCATTCC
2161 AAAATATTATGCCCCACCAAGGCTGAGACAGTGAATTTGGGCTGCTGTAGCCTATTTTTTTAGATTGAGAAATGTGTAGC
2241 TGCAAAAATAATCATGAACCAATCTGGATGCCTCATTATGTCAACCAGGTCCAGATGTGCTATAATCTGTTTTTACGTAT
2321 GTAGGCCCAGTCGTCATCAGATGCTTGCGGCAAAAGGAAAGCTGTGTTTATATGGAAGAAAGTAAGGTGCTTGGAGTTTA
2401 CCTGGCTTATTTAATATGCTTATAACCTAGTTAAAGAAAGGAAAAGAAAACAAAAAACGAATGAAAATAACTGAATTTGG
2481 AGGCTGGAGTAATCAGATTACTGCTTTAATCAGAAACCCTCATTGTGTTTCTACCGGAGAGAGAATGTATTTGCTGACAA
2561 CCATTAAAGTCAGAAGTTTTACTCCAGGTTATTGCAATAAAGTATAATGTTTATTAAATGCTTCATTTGTATGTCAAAGC
2641 TTTGACTCTATAAGCAAATTGCTTTTTTCCAAAACAAAAAGATGTCTCAGGTTTGTTTTGTGAATTTTCTAAAAGCTTTC
2721 ATGTCCCAGAACTTAGCCTTTACCTGTGAAGTGTTACTACAGCCTTAATATTTTCCTAGTAGATCTATATTAGATCAAAT
2801 AGTTGCATAGCAGTATATGTTAATTTGTGTGTTTTTAGCTGTGACACAACTGTGTGATTAAAAGGTATACTTTAGTAGAC
2881 ATTTATAACTCAAGGATACCTTCTTATTTAATCTTTTCTTATTTTTGTACTTTATCATGAATGCTTTTAGTGTGTGCATA
2961 ATAGCTACAGTGCATAGTTGTAGACAAAGTACATTCTGGGGAAACAACATTTATATGTAGCCTTTACTGTTTGATATACC
3041 AAATTAAAAAAAAATTGTATCTCATTACTTATACTGGGACACCATTACCAAAATAATAAAAATCACTTTCATAATCTTGA
3121 AAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uuUAAUCCAUCACCGUCACCUu 5'
            :|| || |  | ||||||| 
Target 5' ctGTTTGGAAAAGACAGTGGAg 3'
1518 - 1539 156.00 -12.00
2
miRNA  3' uuUAAUCCA---UCA----CCGUCACCUu 5'
            |||: ||   |||    | :|||||| 
Target 5' ttATTGAGTTCCAGTTGAAGTTAGTGGAa 3'
1266 - 1294 138.00 -10.70
3
miRNA  3' uuUAAUCCAUCACCGUCACCUu 5'
            |||||  |||  :|||||: 
Target 5' gaATTAGTGAGT-ATAGTGGGg 3'
666 - 686 131.00 -15.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
895235 43 ClinVar
335948 105 ClinVar
335947 115 ClinVar
335946 118 ClinVar
335945 211 ClinVar
899330 233 ClinVar
335944 350 ClinVar
335943 380 ClinVar
335942 466 ClinVar
335941 493 ClinVar
335940 661 ClinVar
896596 688 ClinVar
335939 695 ClinVar
895178 864 ClinVar
335938 868 ClinVar
335937 880 ClinVar
895177 917 ClinVar
895176 926 ClinVar
899269 945 ClinVar
899268 972 ClinVar
335936 975 ClinVar
898167 980 ClinVar
335935 981 ClinVar
335934 1005 ClinVar
335933 1028 ClinVar
898166 1056 ClinVar
335932 1062 ClinVar
335931 1075 ClinVar
335930 1079 ClinVar
335929 1141 ClinVar
335928 1174 ClinVar
335927 1269 ClinVar
895097 1346 ClinVar
335926 1450 ClinVar
335925 1460 ClinVar
335924 1491 ClinVar
899216 1544 ClinVar
899215 1561 ClinVar
335923 1601 ClinVar
899214 1611 ClinVar
898095 1683 ClinVar
335922 1730 ClinVar
898094 1746 ClinVar
898093 1766 ClinVar
335921 1781 ClinVar
896466 1798 ClinVar
896465 1853 ClinVar
335920 1871 ClinVar
335919 1895 ClinVar
895027 1908 ClinVar
895026 1910 ClinVar
335918 1938 ClinVar
899150 1956 ClinVar
899149 1961 ClinVar
335917 2151 ClinVar
335916 2158 ClinVar
335915 2207 ClinVar
898037 2209 ClinVar
898036 2261 ClinVar
898035 2289 ClinVar
898034 2304 ClinVar
335914 2315 ClinVar
335913 2333 ClinVar
335912 2349 ClinVar
335911 2371 ClinVar
335910 2409 ClinVar
896404 2498 ClinVar
335909 2499 ClinVar
894967 2597 ClinVar
335908 2660 ClinVar
894966 2760 ClinVar
899095 3024 ClinVar
899094 3064 ClinVar
335907 3078 ClinVar
899093 3086 ClinVar
COSN26579118 8 COSMIC
COSN20086309 13 COSMIC
COSN31572846 33 COSMIC
COSN30136450 43 COSMIC
COSN26972614 44 COSMIC
COSN30131573 60 COSMIC
COSN24386250 70 COSMIC
COSN30153274 82 COSMIC
COSN30537412 90 COSMIC
COSN30515084 106 COSMIC
COSN30130087 193 COSMIC
COSN31611451 195 COSMIC
COSN20096528 203 COSMIC
COSN9999884 264 COSMIC
COSN21863149 298 COSMIC
COSN22769970 434 COSMIC
COSN9999883 961 COSMIC
COSN4991944 1046 COSMIC
COSN27143387 1415 COSMIC
COSN32063315 1456 COSMIC
COSN31778188 1529 COSMIC
COSN1238451 1817 COSMIC
COSN31544640 2082 COSMIC
COSN31608544 2104 COSMIC
COSN31540168 2264 COSMIC
COSN22978195 2458 COSMIC
COSN6682867 2618 COSMIC
COSN31579390 2683 COSMIC
COSN26564103 2763 COSMIC
COSN30170788 2796 COSMIC
COSN9372749 2885 COSMIC
COSN1238449 3181 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1309926788 5 dbSNP
rs1323328165 6 dbSNP
rs1408485500 9 dbSNP
rs1348927846 10 dbSNP
rs779490117 11 dbSNP
rs758066095 13 dbSNP
rs1438348039 14 dbSNP
rs374781447 16 dbSNP
rs549530862 17 dbSNP
rs753720186 20 dbSNP
rs1365361046 26 dbSNP
rs1227063053 28 dbSNP
rs746835202 33 dbSNP
rs752806666 35 dbSNP
rs943853033 36 dbSNP
rs911116030 37 dbSNP
rs1450051238 38 dbSNP
rs371252753 43 dbSNP
rs531401182 44 dbSNP
rs564036033 47 dbSNP
rs368135295 50 dbSNP
rs763263318 51 dbSNP
rs1050119478 53 dbSNP
rs1370646199 55 dbSNP
rs1292241569 57 dbSNP
rs1473446545 64 dbSNP
rs184645553 65 dbSNP
rs919584970 66 dbSNP
rs1459533628 70 dbSNP
rs571955603 72 dbSNP
rs932683792 78 dbSNP
rs1380622123 80 dbSNP
rs1286605019 82 dbSNP
rs972461502 87 dbSNP
rs560006487 89 dbSNP
rs1342187797 94 dbSNP
rs541757227 103 dbSNP
rs756083290 105 dbSNP
rs117346328 106 dbSNP
rs775081884 107 dbSNP
rs1268929813 111 dbSNP
rs772169906 113 dbSNP
rs555706078 115 dbSNP
rs1799885 118 dbSNP
rs559969824 136 dbSNP
rs576444289 137 dbSNP
rs1187524215 139 dbSNP
rs958405919 143 dbSNP
rs1473755661 144 dbSNP
rs1185986460 145 dbSNP
rs1027778402 153 dbSNP
rs973124255 156 dbSNP
rs1456438048 161 dbSNP
rs961798776 162 dbSNP
rs1403778428 167 dbSNP
rs1015696371 172 dbSNP
rs1250404718 182 dbSNP
rs1353488190 186 dbSNP
rs557975981 188 dbSNP
rs1411369838 192 dbSNP
rs1288814815 197 dbSNP
rs1334549407 205 dbSNP
rs1032081401 206 dbSNP
rs4646431 211 dbSNP
rs1345752471 213 dbSNP
rs1199977377 214 dbSNP
rs540036718 216 dbSNP
rs1255950065 227 dbSNP
rs1484353600 232 dbSNP
rs9341259 233 dbSNP
rs955785244 234 dbSNP
rs1323129390 238 dbSNP
rs1156428276 245 dbSNP
rs1379038750 247 dbSNP
rs1466044236 252 dbSNP
rs745776840 258 dbSNP
rs997213155 260 dbSNP
rs778038757 275 dbSNP
rs1054496314 289 dbSNP
rs1308377511 294 dbSNP
rs1365329060 300 dbSNP
rs1349701962 302 dbSNP
rs1000265348 303 dbSNP
rs1389486157 307 dbSNP
rs1331909721 308 dbSNP
rs1322402315 311 dbSNP
rs61079044 313 dbSNP
rs903289558 314 dbSNP
rs1041548608 316 dbSNP
rs1438637460 332 dbSNP
rs2672 338 dbSNP
rs1019056589 339 dbSNP
rs949925622 344 dbSNP
rs1293884594 347 dbSNP
rs162562 350 dbSNP
rs1055717074 364 dbSNP
rs548084838 368 dbSNP
rs1479838597 369 dbSNP
rs889606330 370 dbSNP
rs1268951385 372 dbSNP
rs1433470356 377 dbSNP
rs35007750 380 dbSNP
rs767718670 390 dbSNP
rs931218124 392 dbSNP
rs920248476 394 dbSNP
rs1169092777 395 dbSNP
rs1369911983 397 dbSNP
rs568674597 415 dbSNP
rs973066999 430 dbSNP
rs1391714053 433 dbSNP
rs961746904 439 dbSNP
rs1301308360 449 dbSNP
rs1037066415 458 dbSNP
rs939708010 462 dbSNP
rs9341260 466 dbSNP
rs755085435 487 dbSNP
rs886055996 493 dbSNP
rs549709752 495 dbSNP
rs1266471512 497 dbSNP
rs751981758 501 dbSNP
rs1212738418 503 dbSNP
rs916060703 514 dbSNP
rs1030285578 538 dbSNP
rs1450752736 543 dbSNP
rs990367341 547 dbSNP
rs531210395 553 dbSNP
rs997103114 564 dbSNP
rs957821272 565 dbSNP
rs1031923359 566 dbSNP
rs964671718 567 dbSNP
rs1032991990 572 dbSNP
rs1268733325 577 dbSNP
rs1324086912 583 dbSNP
rs1391111261 591 dbSNP
rs766678894 596 dbSNP
rs758955269 600 dbSNP
rs1479885402 602 dbSNP
rs1249215663 604 dbSNP
rs1360484548 605 dbSNP
rs1018984138 611 dbSNP
rs1007647935 612 dbSNP
rs903237700 613 dbSNP
rs866302725 631 dbSNP
rs750902586 653 dbSNP
rs886055995 661 dbSNP
rs1041830394 679 dbSNP
rs1014464297 681 dbSNP
rs1241054097 685 dbSNP
rs1484838378 686 dbSNP
rs1183474328 689 dbSNP
rs1231520830 690 dbSNP
rs879617143 692 dbSNP
rs10916 695 dbSNP
rs1162542433 703 dbSNP
rs1414450045 705 dbSNP
rs551894388 713 dbSNP
rs1158437743 728 dbSNP
rs1343562131 733 dbSNP
rs1450327672 736 dbSNP
rs61200304 737 dbSNP
rs1303899460 738 dbSNP
rs1379092107 739 dbSNP
rs188785360 741 dbSNP
rs898383935 747 dbSNP
rs149741723 751 dbSNP
rs920530966 755 dbSNP
rs1297766116 756 dbSNP
rs1283143936 759 dbSNP
rs1314569740 761 dbSNP
rs1211620934 769 dbSNP
rs939971064 782 dbSNP
rs761377599 786 dbSNP
rs1185526335 789 dbSNP
rs1372715692 792 dbSNP
rs1171829432 793 dbSNP
rs1453917591 794 dbSNP
rs1056843 797 dbSNP
rs1176785472 800 dbSNP
rs1406103617 805 dbSNP
rs77396812 809 dbSNP
rs4646432 810 dbSNP
rs538483148 810 dbSNP
rs1375363320 818 dbSNP
rs1433481522 819 dbSNP
rs1201685891 830 dbSNP
rs940370671 836 dbSNP
rs541645546 837 dbSNP
rs906861077 841 dbSNP
rs907593801 847 dbSNP
rs1370741670 852 dbSNP
rs987237179 864 dbSNP
rs200949126 868 dbSNP
rs1203911253 873 dbSNP
rs1483173022 876 dbSNP
rs1276399913 878 dbSNP
rs1208700477 879 dbSNP
rs1483238677 880 dbSNP
rs4646433 880 dbSNP
rs915670883 880 dbSNP
rs936199691 880 dbSNP
rs1479163828 881 dbSNP
rs1208063962 899 dbSNP
rs763178891 903 dbSNP
rs1346570529 916 dbSNP
rs3755026 917 dbSNP
rs1170984769 918 dbSNP
rs1371715878 921 dbSNP
rs9341261 926 dbSNP
rs964301535 928 dbSNP
rs567441392 936 dbSNP
rs1327335898 945 dbSNP
rs1352396062 948 dbSNP
rs1438220860 959 dbSNP
rs966323637 965 dbSNP
rs911889744 967 dbSNP
rs2855658 975 dbSNP
rs1299649597 978 dbSNP
rs34521017 980 dbSNP
rs9341262 981 dbSNP
rs1453533057 988 dbSNP
rs35275599 991 dbSNP
rs1252619249 998 dbSNP
rs1014333818 1001 dbSNP
rs895913180 1002 dbSNP
rs35978993 1005 dbSNP
rs1001788696 1006 dbSNP
rs1015868808 1012 dbSNP
rs1004081342 1015 dbSNP
rs868867605 1027 dbSNP
rs144188082 1028 dbSNP
rs1045336299 1038 dbSNP
rs1293670671 1044 dbSNP
rs1393315343 1044 dbSNP
rs187540802 1056 dbSNP
rs185371002 1062 dbSNP
rs940652373 1067 dbSNP
rs1226679808 1070 dbSNP
rs77105857 1075 dbSNP
rs886055994 1079 dbSNP
rs1272730209 1080 dbSNP
rs769906396 1088 dbSNP
rs933063731 1101 dbSNP
rs921692721 1102 dbSNP
rs935777988 1112 dbSNP
rs745738353 1121 dbSNP
rs1191592667 1122 dbSNP
rs1239729009 1135 dbSNP
rs771959610 1136 dbSNP
rs759611970 1141 dbSNP
rs187558403 1147 dbSNP
rs942852208 1148 dbSNP
rs1416684116 1162 dbSNP
rs1160732162 1170 dbSNP
rs1459580607 1170 dbSNP
rs1381170209 1174 dbSNP
rs3834137 1174 dbSNP
rs1041943520 1177 dbSNP
rs944907469 1179 dbSNP
rs912152152 1183 dbSNP
rs774416054 1187 dbSNP
rs986107176 1198 dbSNP
rs556630470 1199 dbSNP
rs1261543148 1205 dbSNP
rs1349962120 1210 dbSNP
rs537837714 1220 dbSNP
rs1441278194 1221 dbSNP
rs920622431 1225 dbSNP
rs973495853 1227 dbSNP
rs572150558 1228 dbSNP
rs1474011504 1245 dbSNP
rs962479508 1247 dbSNP
rs1364053276 1248 dbSNP
rs1452376331 1249 dbSNP
rs1201744306 1258 dbSNP
rs368176353 1259 dbSNP
rs1435340755 1262 dbSNP
rs570388762 1269 dbSNP
rs1411434873 1284 dbSNP
rs1307929818 1295 dbSNP
rs1335420501 1306 dbSNP
rs553994614 1308 dbSNP
rs1276726372 1309 dbSNP
rs1349221887 1316 dbSNP
rs1210864304 1323 dbSNP
rs551835464 1326 dbSNP
rs1278824838 1328 dbSNP
rs971246335 1341 dbSNP
rs538548349 1343 dbSNP
rs960122791 1346 dbSNP
rs1196770841 1349 dbSNP
rs1034856787 1352 dbSNP
rs770933705 1359 dbSNP
rs748259917 1363 dbSNP
rs527357618 1379 dbSNP
rs1330986579 1382 dbSNP
rs1454343740 1389 dbSNP
rs1001337556 1390 dbSNP
rs142396010 1391 dbSNP
rs547944494 1396 dbSNP
rs1016087566 1398 dbSNP
rs1298583713 1401 dbSNP
rs1341068424 1401 dbSNP
rs894127603 1402 dbSNP
rs1054552785 1403 dbSNP
rs1325590177 1404 dbSNP
rs1371740598 1405 dbSNP
rs1004746104 1416 dbSNP
rs1336239671 1430 dbSNP
rs999942014 1432 dbSNP
rs1041869867 1433 dbSNP
rs886055993 1450 dbSNP
rs1251173310 1452 dbSNP
rs1480099999 1459 dbSNP
rs137915099 1460 dbSNP
rs1468507036 1475 dbSNP
rs1384835571 1476 dbSNP
rs890685009 1477 dbSNP
rs1170871162 1478 dbSNP
rs1372342682 1480 dbSNP
rs1460285812 1481 dbSNP
rs562799717 1491 dbSNP
rs182974636 1495 dbSNP
rs1440239890 1503 dbSNP
rs1324018008 1504 dbSNP
rs900213563 1506 dbSNP
rs61690393 1517 dbSNP
rs547421439 1532 dbSNP
rs1295517976 1534 dbSNP
rs1306060976 1536 dbSNP
rs9341263 1540 dbSNP
rs1247483513 1556 dbSNP
rs34474461 1561 dbSNP
rs1472259324 1575 dbSNP
rs1237754878 1585 dbSNP
rs1188990787 1586 dbSNP
rs1444818272 1597 dbSNP
rs886055992 1601 dbSNP
rs973844941 1604 dbSNP
rs546233182 1607 dbSNP
rs4630747 1609 dbSNP
rs572531079 1611 dbSNP
rs1260959912 1621 dbSNP
rs978953402 1624 dbSNP
rs554309996 1630 dbSNP
rs1166896850 1638 dbSNP
rs1418812276 1640 dbSNP
rs946262051 1647 dbSNP
rs1162863720 1649 dbSNP
rs1271038599 1669 dbSNP
rs1227596553 1673 dbSNP
rs1357300779 1674 dbSNP
rs189809220 1683 dbSNP
rs992809675 1687 dbSNP
rs982553206 1688 dbSNP
rs960317584 1692 dbSNP
rs1325957340 1703 dbSNP
rs1294330554 1716 dbSNP
rs886055991 1730 dbSNP
rs1232358293 1736 dbSNP
rs927357675 1737 dbSNP
rs980150505 1743 dbSNP
rs34169771 1746 dbSNP
rs1215920254 1748 dbSNP
rs991402879 1750 dbSNP
rs532324354 1759 dbSNP
rs1189797184 1760 dbSNP
rs1258037017 1766 dbSNP
rs369078176 1767 dbSNP
rs1185996016 1768 dbSNP
rs1032646115 1775 dbSNP
rs1401307023 1777 dbSNP
rs950631916 1779 dbSNP
rs1406369497 1780 dbSNP
rs750990195 1781 dbSNP
rs779407183 1785 dbSNP
rs1474112538 1793 dbSNP
rs1389025421 1797 dbSNP
rs900163227 1798 dbSNP
rs1008683161 1802 dbSNP
rs574973848 1804 dbSNP
rs1051073866 1808 dbSNP
rs1000604188 1809 dbSNP
rs397897606 1810 dbSNP
rs9341264 1810 dbSNP
rs899419044 1834 dbSNP
rs903629356 1836 dbSNP
rs776487480 1838 dbSNP
rs1220521248 1849 dbSNP
rs9341265 1853 dbSNP
rs1292238053 1857 dbSNP
rs538184854 1860 dbSNP
rs1280963632 1869 dbSNP
rs9341266 1871 dbSNP
rs1208494809 1878 dbSNP
rs913445988 1879 dbSNP
rs1057504311 1880 dbSNP
rs1234794866 1890 dbSNP
rs1380286136 1892 dbSNP
rs938982236 1894 dbSNP
rs886055990 1895 dbSNP
rs1298417204 1902 dbSNP
rs34544682 1908 dbSNP
rs1405956907 1910 dbSNP
rs917076692 1916 dbSNP
rs991740470 1925 dbSNP
rs1433189786 1929 dbSNP
rs1331344827 1932 dbSNP
rs1274816032 1937 dbSNP
rs570132783 1938 dbSNP
rs1297268263 1943 dbSNP
rs747724277 1945 dbSNP
rs1352006290 1948 dbSNP
rs1235898139 1956 dbSNP
rs1304005653 1957 dbSNP
rs1033361792 1960 dbSNP
rs767403314 1961 dbSNP
rs1325048121 1974 dbSNP
rs533555807 1978 dbSNP
rs1369630503 1983 dbSNP
rs983212249 1989 dbSNP
rs1231762874 1999 dbSNP
rs978422251 2007 dbSNP
rs548724832 2008 dbSNP
rs1168655861 2020 dbSNP
rs1438595150 2021 dbSNP
rs950607605 2025 dbSNP
rs1393153202 2032 dbSNP
rs1190574619 2038 dbSNP
rs967024648 2050 dbSNP
rs1252890057 2051 dbSNP
rs1478202302 2061 dbSNP
rs1019987880 2064 dbSNP
rs1169997528 2065 dbSNP
rs1030202641 2066 dbSNP
rs1008650566 2074 dbSNP
rs1420599550 2074 dbSNP
rs997833781 2081 dbSNP
rs1169264212 2083 dbSNP
rs1482846161 2086 dbSNP
rs1275685066 2103 dbSNP
rs1442438611 2110 dbSNP
rs566186098 2116 dbSNP
rs890245644 2117 dbSNP
rs1029127097 2120 dbSNP
rs1434287958 2121 dbSNP
rs996749387 2126 dbSNP
rs1213803360 2128 dbSNP
rs1271085508 2129 dbSNP
rs1337284180 2137 dbSNP
rs767476761 2139 dbSNP
rs964686364 2141 dbSNP
rs1252520915 2147 dbSNP
rs778382705 2150 dbSNP
rs886055989 2151 dbSNP
rs112948057 2158 dbSNP
rs529891647 2166 dbSNP
rs1409661042 2168 dbSNP
rs1475262868 2173 dbSNP
rs1349469791 2174 dbSNP
rs1420984375 2181 dbSNP
rs1462749321 2184 dbSNP
rs903570812 2202 dbSNP
rs9341267 2207 dbSNP
rs949462503 2209 dbSNP
rs1009360402 2214 dbSNP
rs1055609485 2222 dbSNP
rs1276146448 2223 dbSNP
rs937185725 2225 dbSNP
rs891952654 2226 dbSNP
rs774219079 2229 dbSNP
rs979071490 2233 dbSNP
rs967330279 2234 dbSNP
rs1206996157 2238 dbSNP
rs550772059 2239 dbSNP
rs1057330976 2249 dbSNP
rs938916002 2250 dbSNP
rs1214084352 2253 dbSNP
rs987144409 2255 dbSNP
rs1427260794 2258 dbSNP
rs1188138684 2259 dbSNP
rs77534033 2261 dbSNP
rs34329725 2267 dbSNP
rs1159842587 2271 dbSNP
rs1385537900 2274 dbSNP
rs1400107998 2286 dbSNP
rs1296282152 2288 dbSNP
rs942042282 2299 dbSNP
rs1376981917 2302 dbSNP
rs1252758565 2303 dbSNP
rs909259463 2304 dbSNP
rs561615550 2315 dbSNP
rs552557175 2316 dbSNP
rs1236975925 2317 dbSNP
rs1280284306 2320 dbSNP
rs1350574209 2321 dbSNP
rs929439602 2323 dbSNP
rs923083328 2326 dbSNP
rs186892186 2332 dbSNP
rs35320531 2333 dbSNP
rs1210639298 2335 dbSNP
rs148346683 2338 dbSNP
rs1330273503 2342 dbSNP
rs143355830 2343 dbSNP
rs967704337 2347 dbSNP
rs1020668056 2348 dbSNP
rs9341268 2349 dbSNP
rs1301742560 2352 dbSNP
rs895203917 2356 dbSNP
rs544807016 2357 dbSNP
rs1036246310 2365 dbSNP
rs1448188829 2370 dbSNP
rs9309020 2371 dbSNP
rs1156898890 2373 dbSNP
rs1456460365 2375 dbSNP
rs936796411 2380 dbSNP
rs1464517279 2381 dbSNP
rs776817866 2382 dbSNP
rs1254693145 2385 dbSNP
rs906089087 2389 dbSNP
rs1412449103 2390 dbSNP
rs1456897153 2393 dbSNP
rs1176294958 2399 dbSNP
rs1254783888 2402 dbSNP
rs162549 2409 dbSNP
rs1474344391 2424 dbSNP
rs1375663249 2426 dbSNP
rs942323901 2446 dbSNP
rs1182496625 2458 dbSNP
rs945915087 2458 dbSNP
rs1444620717 2464 dbSNP
rs887770356 2489 dbSNP
rs1047748115 2492 dbSNP
rs533544141 2496 dbSNP
rs572548236 2498 dbSNP
rs886055988 2499 dbSNP
rs1465577097 2503 dbSNP
rs987110086 2512 dbSNP
rs1251506217 2517 dbSNP
rs541633279 2520 dbSNP
rs149217116 2523 dbSNP
rs750830399 2535 dbSNP
rs780245744 2536 dbSNP
rs979336409 2537 dbSNP
rs967987632 2553 dbSNP
rs1190481562 2560 dbSNP
rs1265221548 2562 dbSNP
rs1020615878 2569 dbSNP
rs772227950 2588 dbSNP
rs746236755 2597 dbSNP
rs1464321092 2598 dbSNP
rs1395229628 2608 dbSNP
rs1461019885 2609 dbSNP
rs1005014450 2632 dbSNP
rs1228357193 2637 dbSNP
rs1383096318 2639 dbSNP
rs1295399204 2645 dbSNP
rs138583950 2650 dbSNP
rs886055987 2660 dbSNP
rs1334876830 2662 dbSNP
rs1220214098 2663 dbSNP
rs1263581403 2672 dbSNP
rs190323753 2676 dbSNP
rs1205496231 2678 dbSNP
rs1013819957 2684 dbSNP
rs1476722704 2689 dbSNP
rs1389366015 2691 dbSNP
rs895120047 2698 dbSNP
rs1423300556 2709 dbSNP
rs1162818833 2711 dbSNP
rs1347460944 2722 dbSNP
rs1454817535 2737 dbSNP
rs1288814374 2745 dbSNP
rs1033726479 2752 dbSNP
rs1417042891 2757 dbSNP
rs550461175 2758 dbSNP
rs375588205 2760 dbSNP
rs903946149 2770 dbSNP
rs1227211566 2780 dbSNP
rs1166077527 2781 dbSNP
rs1310036310 2782 dbSNP
rs1006415105 2783 dbSNP
rs888051984 2784 dbSNP
rs1048169107 2788 dbSNP
rs1285264532 2791 dbSNP
rs1487159702 2791 dbSNP
rs147024942 2796 dbSNP
rs1258456352 2797 dbSNP
rs1483085973 2805 dbSNP
rs1180180664 2809 dbSNP
rs571561284 2822 dbSNP
rs1410180953 2827 dbSNP
rs1419754555 2829 dbSNP
rs1165785833 2847 dbSNP
rs901885521 2854 dbSNP
rs1436945925 2857 dbSNP
rs1313913836 2858 dbSNP
rs1359373757 2859 dbSNP
rs767958180 2861 dbSNP
rs546956486 2865 dbSNP
rs1374828799 2866 dbSNP
rs1388406948 2868 dbSNP
rs1188082508 2871 dbSNP
rs1450624969 2877 dbSNP
rs943468576 2887 dbSNP
rs910375547 2889 dbSNP
rs1351476990 2894 dbSNP
rs921591941 2899 dbSNP
rs1311404948 2900 dbSNP
rs1208203103 2905 dbSNP
rs1250499535 2906 dbSNP
rs1043601336 2907 dbSNP
rs1480971798 2911 dbSNP
rs527670302 2927 dbSNP
rs560500113 2950 dbSNP
rs1236851604 2953 dbSNP
rs908963867 2954 dbSNP
rs1424826496 2955 dbSNP
rs1413123667 2963 dbSNP
rs946590579 2965 dbSNP
rs1488378691 2969 dbSNP
rs779209305 2977 dbSNP
rs187162676 2983 dbSNP
rs1322928147 2984 dbSNP
rs1374555907 2986 dbSNP
rs1442939244 2990 dbSNP
rs757806466 2992 dbSNP
rs548586507 2993 dbSNP
rs960408499 2996 dbSNP
rs1365810376 2999 dbSNP
rs182069485 3021 dbSNP
rs532039339 3024 dbSNP
rs777407143 3031 dbSNP
rs1389773386 3046 dbSNP
rs1246662490 3055 dbSNP
rs992370496 3055 dbSNP
rs959686446 3058 dbSNP
rs1034063876 3060 dbSNP
rs1421207243 3063 dbSNP
rs1294274004 3068 dbSNP
rs1465869672 3073 dbSNP
rs1169534991 3074 dbSNP
rs886055986 3078 dbSNP
rs1000878158 3080 dbSNP
rs1056876 3081 dbSNP
rs969140341 3086 dbSNP
rs1168017085 3087 dbSNP
rs1349273152 3094 dbSNP
rs1433985563 3102 dbSNP
rs903911217 3110 dbSNP
rs1021062325 3116 dbSNP
rs1218184513 3117 dbSNP
rs763249800 3134 dbSNP
rs1023072470 3137 dbSNP
rs1197403031 3140 dbSNP
rs1006364550 3141 dbSNP
rs1432905445 3142 dbSNP
rs6760346 3147 dbSNP
rs767282503 3151 dbSNP
rs1193348712 3155 dbSNP
rs868241859 3157 dbSNP
rs1051636104 3164 dbSNP
rs994194269 3173 dbSNP
rs1192434106 3175 dbSNP
rs933225223 3176 dbSNP
rs1475888363 3188 dbSNP
rs1163373257 3191 dbSNP
rs901834582 3193 dbSNP
rs1403587068 3196 dbSNP
rs1320222008 3205 dbSNP
rs900423098 3209 dbSNP
rs577070952 3213 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_ControlA_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uuuAAUCCAUCACCGUCACcuu 5'
             || || |  | |||||   
Target 5' ---UUUGGAAAAGACAGUG--- 3'
1 - 16
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_ControlA_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control A
Location of target site ENST00000260630.3 | 3UTR | UUUGGAAAAGACAGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
82 hsa-miR-6509-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055374 PDCD4 programmed cell death 4 2 4
MIRT378341 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT444668 CDKL2 cyclin dependent kinase like 2 2 2
MIRT446953 CD248 CD248 molecule 2 2
MIRT460332 CAMK4 calcium/calmodulin dependent protein kinase IV 2 6
MIRT464078 VPS4A vacuolar protein sorting 4 homolog A 2 2
MIRT464586 UBN2 ubinuclein 2 2 2
MIRT468482 SESN3 sestrin 3 2 2
MIRT468962 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT475455 HSPA8 heat shock protein family A (Hsp70) member 8 2 2
MIRT482403 ADRB1 adrenoceptor beta 1 2 10
MIRT486992 ZFAND2B zinc finger AN1-type containing 2B 2 2
MIRT489397 TUBB2A tubulin beta 2A class IIa 2 2
MIRT526319 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526560 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT526732 ZNF138 zinc finger protein 138 2 8
MIRT531581 STXBP5L syntaxin binding protein 5 like 2 2
MIRT532011 NOX5 NADPH oxidase 5 2 2
MIRT533407 TXLNG taxilin gamma 2 2
MIRT533436 TRPC5 transient receptor potential cation channel subfamily C member 5 2 2
MIRT533866 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT539254 ANKRD50 ankyrin repeat domain 50 2 2
MIRT541451 C15orf48 chromosome 15 open reading frame 48 2 2
MIRT566794 MIER3 MIER family member 3 2 2
MIRT569294 SURF6 surfeit 6 2 2
MIRT571336 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT572802 PPP3CB protein phosphatase 3 catalytic subunit beta 2 2
MIRT572813 MYO1C myosin IC 2 2
MIRT574219 DMRT2 doublesex and mab-3 related transcription factor 2 2 2
MIRT607259 GRAMD1B GRAM domain containing 1B 2 4
MIRT609307 CHD4 chromodomain helicase DNA binding protein 4 2 2
MIRT615459 REPS1 RALBP1 associated Eps domain containing 1 2 2
MIRT616861 RPLP1 ribosomal protein lateral stalk subunit P1 2 2
MIRT619415 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT619652 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT625325 TNFRSF13B TNF receptor superfamily member 13B 2 2
MIRT638980 ARFIP2 ADP ribosylation factor interacting protein 2 2 2
MIRT639458 ZNF429 zinc finger protein 429 2 2
MIRT640550 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT641473 B4GALNT3 beta-1,4-N-acetyl-galactosaminyltransferase 3 2 2
MIRT642720 ATXN3 ataxin 3 2 2
MIRT643048 SMN1 survival of motor neuron 1, telomeric 2 2
MIRT644921 SMN2 survival of motor neuron 2, centromeric 2 2
MIRT645875 ZNF275 zinc finger protein 275 2 2
MIRT649824 LIPG lipase G, endothelial type 2 2
MIRT649851 GYS2 glycogen synthase 2 2 2
MIRT649972 TRAFD1 TRAF-type zinc finger domain containing 1 2 2
MIRT650675 ZNF259 ZPR1 zinc finger 1 1
MIRT651319 ZCCHC2 zinc finger CCHC-type containing 2 2 2
MIRT652876 TAB1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 2 2
MIRT652881 SYVN1 synoviolin 1 2 2
MIRT654144 RPAP2 RNA polymerase II associated protein 2 2 2
MIRT657080 JMY junction mediating and regulatory protein, p53 cofactor 2 2
MIRT657181 INO80C INO80 complex subunit C 2 2
MIRT657830 GJD3 gap junction protein delta 3 2 2
MIRT657897 GDF7 growth differentiation factor 7 2 2
MIRT659631 CDKN2AIP CDKN2A interacting protein 2 2
MIRT663115 SPTA1 spectrin alpha, erythrocytic 1 2 2
MIRT664739 METTL16 methyltransferase like 16 2 2
MIRT667551 LRAT lecithin retinol acyltransferase 2 2
MIRT668552 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT682893 XIAP X-linked inhibitor of apoptosis 2 2
MIRT683092 PRRG4 proline rich and Gla domain 4 2 2
MIRT683102 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT697648 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT709158 ZNF419 zinc finger protein 419 2 2
MIRT713220 RCAN2 regulator of calcineurin 2 2 2
MIRT713277 LAIR1 leukocyte associated immunoglobulin like receptor 1 2 2
MIRT715008 CYP1B1 cytochrome P450 family 1 subfamily B member 1 2 2
MIRT715051 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT715696 PNMAL2 paraneoplastic Ma antigen family member 8B 2 2
MIRT717250 TMEM246 transmembrane protein 246 2 2
MIRT717322 PGK1 phosphoglycerate kinase 1 2 2
MIRT717587 MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like 2 2
MIRT718122 CHST4 carbohydrate sulfotransferase 4 2 2
MIRT718418 CALN1 calneuron 1 2 2
MIRT718750 ZNF490 zinc finger protein 490 2 2
MIRT720048 PPP1R3F protein phosphatase 1 regulatory subunit 3F 2 2
MIRT721497 THRB thyroid hormone receptor beta 2 2
MIRT722531 EPRS glutamyl-prolyl-tRNA synthetase 2 2
MIRT723279 KRTAP21-2 keratin associated protein 21-2 2 2
MIRT724813 MSX2 msh homeobox 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6509-3p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-6509-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6509-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-6509-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-6509-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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