pre-miRNA Information
pre-miRNA hsa-mir-548t   
Genomic Coordinates chr4: 173268160 - 173268233
Description Homo sapiens miR-548t stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548t-3p
Sequence 46| AAAAACCACAAUUACUUUUGCACCA |70
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 4 + 173268206 29233923 MiREDiBase
A-to-I 3 4 + 173268207 29233923 MiREDiBase
A-to-I 4 4 + 173268208 29233923 MiREDiBase
A-to-I 10 4 + 173268214 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs73872515 5 dbSNP
rs1426966747 6 dbSNP
rs1158401109 21 dbSNP
rs943938928 24 dbSNP
Putative Targets

Gene Information
Gene Symbol TADA3   
Synonyms ADA3, NGG1, STAF54, TADA3L, hADA3
Description transcriptional adaptor 3
Transcript NM_133480   
Other Transcripts NM_006354   
Expression
Putative miRNA Targets on TADA3
3'UTR of TADA3
(miRNA target sites are highlighted)
>TADA3|NM_133480|3'UTR
   1 GCGTTAGCAGGATGCACAGTCCCGGGGGTGGCCTTGGAGGCTGTGGCCACGGCTAGTCACCTTTCAGGGGTTTTACAACA
  81 GGCTTTCCAATCCTGGCTGGCCTCTAAATCACCTGGAGAGCCTCGAAAAAAACAGCAGTGGCCAGTCCACCGGGTATGTC
 161 CCAAACAAATTCTGATTCCACAGAGTGGGGCTCAGGCATCTGTGACTGACCGATTGATTTGATTTGTTTTTGTTTTGTTT
 241 TTTTTTGAGAGGGAGTCTCGCACTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAAGCTCCGCCTCC
 321 CAGGTTCATGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGATACTACAGGCACCCACCACCACGCCCAGCTAATTTTT
 401 TTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACCCGCCTC
 481 GGCCTCCCAAAGTGCCGGGATTACAGGCGTGAGCCACTGCGCCTGGCCTAGTTTGGTTTTTTAATTATGGTAAAGGCATA
 561 ATATAAAATGTATCTCCATGGGAGGCTGAGGCAGGAGAATCAGTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCTGAGAC
 641 TGCACCATTGCATTCCAGCCTGGGCAACAAGAGTGAAACTGCATCTCAAAAAAAAAAAGAAAAAAAATTTACGCTTCTTA
 721 ACCATTTTTAAGTGTACAGTTTAGTAGTGTTACCCATATTCACATTGTTGTGTGATTTATTTTTTGTCTTTTCATGCTTC
 801 TTTTCTTTTTATCCCCAAAGTTTTGTTATTAAAAATTTGATACACACAGAAAATCTGAAAGAATCATACAATAAACATCA
 881 GTATATTCTCCACCTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' accacguuuucAUUAACACCAAAAa 5'
                     ||:|| ||||||| 
Target 5' tgcgcctggccTAGTT-TGGTTTTt 3'
518 - 541 153.00 -9.00
2
miRNA  3' accacguuuucauuaacaCCAAAAa 5'
                            |||||| 
Target 5' ggctagtcacctttcaggGGTTTTa 3'
51 - 75 120.00 -6.30
3
miRNA  3' accacguUUUCAUUA-ACACCAAAaa 5'
                 | | |: | |||| |||  
Target 5' catattcACATTGTTGTGTGATTTat 3'
755 - 780 102.00 -5.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM7687582 5 COSMIC
COSN30507242 7 COSMIC
COSN26997755 24 COSMIC
COSN31518494 37 COSMIC
COSN31512994 101 COSMIC
COSN28872294 238 COSMIC
COSN20853681 295 COSMIC
COSN20568844 488 COSMIC
COSN9580831 684 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1262475630 2 dbSNP
rs773322354 3 dbSNP
rs532909048 6 dbSNP
rs367748976 8 dbSNP
rs781150747 11 dbSNP
rs1247814639 12 dbSNP
rs747926283 15 dbSNP
rs993634584 16 dbSNP
rs372230600 23 dbSNP
rs746699534 24 dbSNP
rs779517346 25 dbSNP
rs1453697128 26 dbSNP
rs1343885025 27 dbSNP
rs757944061 28 dbSNP
rs754916871 29 dbSNP
rs1384913065 32 dbSNP
rs749971106 37 dbSNP
rs778208877 38 dbSNP
rs1015928337 47 dbSNP
rs1262555025 49 dbSNP
rs1347428947 49 dbSNP
rs17050567 50 dbSNP
rs373839022 51 dbSNP
rs540657709 59 dbSNP
rs1479965829 62 dbSNP
rs939587763 64 dbSNP
rs1056467750 69 dbSNP
rs781041191 81 dbSNP
rs1455809146 85 dbSNP
rs1191366044 92 dbSNP
rs188077686 97 dbSNP
rs1181647900 105 dbSNP
rs1410169566 109 dbSNP
rs1171961520 111 dbSNP
rs907353813 125 dbSNP
rs1041915335 126 dbSNP
rs1461442104 127 dbSNP
rs1326430373 133 dbSNP
rs969936973 137 dbSNP
rs1438533370 145 dbSNP
rs1022380401 146 dbSNP
rs1367233341 149 dbSNP
rs866200140 151 dbSNP
rs113892132 152 dbSNP
rs1287535554 156 dbSNP
rs1274280650 179 dbSNP
rs1470216665 183 dbSNP
rs1229816982 190 dbSNP
rs1212270698 202 dbSNP
rs893257728 211 dbSNP
rs998123674 212 dbSNP
rs1187858576 215 dbSNP
rs1416790179 216 dbSNP
rs1165009853 220 dbSNP
rs1427338510 220 dbSNP
rs1396679621 229 dbSNP
rs1459791459 231 dbSNP
rs901075155 233 dbSNP
rs1054352126 234 dbSNP
rs942707143 237 dbSNP
rs1278896548 239 dbSNP
rs1272085096 240 dbSNP
rs1236728810 242 dbSNP
rs1359955197 243 dbSNP
rs1348739849 246 dbSNP
rs1290253499 247 dbSNP
rs1293968600 247 dbSNP
rs1231962362 249 dbSNP
rs1410732958 251 dbSNP
rs1365186277 253 dbSNP
rs1321759465 260 dbSNP
rs1407455526 261 dbSNP
rs1391848247 275 dbSNP
rs910445680 278 dbSNP
rs986467039 283 dbSNP
rs1240068943 288 dbSNP
rs933276195 295 dbSNP
rs543721262 297 dbSNP
rs576585049 298 dbSNP
rs1474201424 302 dbSNP
rs1164066190 308 dbSNP
rs1408454445 310 dbSNP
rs1471880226 311 dbSNP
rs565216534 314 dbSNP
rs971924597 315 dbSNP
rs1399606551 320 dbSNP
rs961755848 322 dbSNP
rs1244626046 328 dbSNP
rs1232014570 329 dbSNP
rs1284054258 332 dbSNP
rs1352025900 333 dbSNP
rs1223233242 349 dbSNP
rs1282573707 353 dbSNP
rs1352582992 354 dbSNP
rs888244833 356 dbSNP
rs1048167949 366 dbSNP
rs1451986238 369 dbSNP
rs1259029817 379 dbSNP
rs1016022072 382 dbSNP
rs1233450203 385 dbSNP
rs540032310 390 dbSNP
rs984430524 391 dbSNP
rs1283243513 403 dbSNP
rs1419361559 403 dbSNP
rs1206786278 412 dbSNP
rs958370828 417 dbSNP
rs1413082887 419 dbSNP
rs1034045027 420 dbSNP
rs1003520399 423 dbSNP
rs907493103 427 dbSNP
rs1229094670 430 dbSNP
rs566214246 431 dbSNP
rs1056712262 432 dbSNP
rs1281933394 435 dbSNP
rs1010370069 438 dbSNP
rs938319205 439 dbSNP
rs893184150 450 dbSNP
rs1439530977 451 dbSNP
rs183146334 464 dbSNP
rs1332082553 465 dbSNP
rs535873694 466 dbSNP
rs986578658 472 dbSNP
rs1318050996 473 dbSNP
rs374166623 475 dbSNP
rs1391463152 476 dbSNP
rs889771877 480 dbSNP
rs1051140007 481 dbSNP
rs915386564 483 dbSNP
rs1172111055 491 dbSNP
rs933223707 496 dbSNP
rs1412157689 497 dbSNP
rs923220287 506 dbSNP
rs989601409 508 dbSNP
rs971851188 509 dbSNP
rs1368393622 511 dbSNP
rs956756318 518 dbSNP
rs940522019 520 dbSNP
rs908930305 521 dbSNP
rs1194010899 522 dbSNP
rs1478132461 526 dbSNP
rs984524744 536 dbSNP
rs1215387887 542 dbSNP
rs958503712 543 dbSNP
rs1186444333 548 dbSNP
rs1431695990 549 dbSNP
rs1198370133 553 dbSNP
rs1034430053 563 dbSNP
rs981168348 564 dbSNP
rs1166222130 571 dbSNP
rs568330202 573 dbSNP
rs972024277 576 dbSNP
rs1020497444 577 dbSNP
rs1462405649 579 dbSNP
rs1268711477 580 dbSNP
rs1202910229 582 dbSNP
rs1311710476 585 dbSNP
rs1276553902 595 dbSNP
rs549270258 597 dbSNP
rs1385896089 599 dbSNP
rs190050480 600 dbSNP
rs1345963343 603 dbSNP
rs569928116 609 dbSNP
rs1297412925 618 dbSNP
rs1276995428 619 dbSNP
rs1007213877 620 dbSNP
rs1235022407 650 dbSNP
rs893319939 661 dbSNP
rs1209468697 664 dbSNP
rs888327646 667 dbSNP
rs1448938816 671 dbSNP
rs1433353646 687 dbSNP
rs1422970500 695 dbSNP
rs1167667653 699 dbSNP
rs1475838460 699 dbSNP
rs1367099946 700 dbSNP
rs1457778961 701 dbSNP
rs1289805041 706 dbSNP
rs1386747138 708 dbSNP
rs1026758419 709 dbSNP
rs1367722552 712 dbSNP
rs1416559886 713 dbSNP
rs1321829604 715 dbSNP
rs1452491995 717 dbSNP
rs993908754 720 dbSNP
rs1239571492 732 dbSNP
rs1033170127 737 dbSNP
rs1353158633 738 dbSNP
rs1006925526 742 dbSNP
rs889910726 743 dbSNP
rs530804502 753 dbSNP
rs1486006338 754 dbSNP
rs938363692 758 dbSNP
rs1423719603 759 dbSNP
rs1414751484 761 dbSNP
rs1160340903 762 dbSNP
rs1418360729 764 dbSNP
rs532945332 765 dbSNP
rs1157617293 767 dbSNP
rs559048226 778 dbSNP
rs1375529899 785 dbSNP
rs1300549097 786 dbSNP
rs905492730 786 dbSNP
rs1378409071 788 dbSNP
rs998199298 788 dbSNP
rs1045353669 794 dbSNP
rs1308916489 797 dbSNP
rs901731801 799 dbSNP
rs1482224203 800 dbSNP
rs1235865253 803 dbSNP
rs1212329391 805 dbSNP
rs1443007680 808 dbSNP
rs1213173968 810 dbSNP
rs1254300345 811 dbSNP
rs915434457 814 dbSNP
rs140119499 815 dbSNP
rs935455435 825 dbSNP
rs940615525 826 dbSNP
rs924027401 828 dbSNP
rs1226394635 841 dbSNP
rs1344790679 843 dbSNP
rs1455284986 845 dbSNP
rs1298752701 849 dbSNP
rs766462669 849 dbSNP
rs1358030185 858 dbSNP
rs1462451271 863 dbSNP
rs1228299566 868 dbSNP
rs1377601441 881 dbSNP
rs909026496 883 dbSNP
rs1048965929 893 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_ControlA_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' accacguUUUCAUU-A--ACACCaaaaa 5'
                 |||||:| |  |||||     
Target 5' uaagaauAAAGUGACUGCUGUGG----- 3'
14 - 36
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_ControlA_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control A
Location of target site ENST00000301964.2 | 3UTR | UAAAGUGCAAACUUAAGAAUAAAGUGACUGCUGUGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
168 hsa-miR-548t-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059365 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT072839 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 6
MIRT076945 PCGF2 polycomb group ring finger 2 2 6
MIRT083941 TFAP2C transcription factor AP-2 gamma 2 2
MIRT085401 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT109790 KLHL15 kelch like family member 15 2 2
MIRT114046 AKAP11 A-kinase anchoring protein 11 2 10
MIRT130165 TXNIP thioredoxin interacting protein 2 6
MIRT150013 MIDN midnolin 2 2
MIRT181258 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT205594 NCL nucleolin 2 2
MIRT222253 ACTB actin beta 2 4
MIRT245653 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT250947 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT252497 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT271990 ARF1 ADP ribosylation factor 1 2 4
MIRT280804 RNF11 ring finger protein 11 2 2
MIRT293803 FEM1A fem-1 homolog A 2 2
MIRT318231 RREB1 ras responsive element binding protein 1 2 2
MIRT341455 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT347413 CEBPG CCAAT/enhancer binding protein gamma 2 4
MIRT351860 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT357983 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT377094 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT407303 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT441564 LMOD3 leiomodin 3 2 2
MIRT442364 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT443228 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT443404 HMX3 H6 family homeobox 3 2 2
MIRT446055 NR5A2 nuclear receptor subfamily 5 group A member 2 2 2
MIRT448277 ZNF652 zinc finger protein 652 2 2
MIRT450822 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT453016 CCDC115 coiled-coil domain containing 115 2 17
MIRT454463 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta 2 2
MIRT456360 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT460007 DNALI1 dynein axonemal light intermediate chain 1 2 2
MIRT463154 ZNF385A zinc finger protein 385A 2 6
MIRT463766 YPEL2 yippee like 2 2 2
MIRT468310 SFT2D2 SFT2 domain containing 2 2 2
MIRT470668 POLR2D RNA polymerase II subunit D 2 4
MIRT478517 CTTN cortactin 2 2
MIRT480507 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT484718 INHBA inhibin beta A subunit 2 12
MIRT485494 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT487302 SLC38A9 solute carrier family 38 member 9 2 2
MIRT487771 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491876 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494304 CEP120 centrosomal protein 120 2 2
MIRT495396 TRIM24 tripartite motif containing 24 2 2
MIRT495646 CDK1 cyclin dependent kinase 1 2 2
MIRT496665 TMEM237 transmembrane protein 237 2 2
MIRT496837 ZNF460 zinc finger protein 460 2 2
MIRT498638 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT503928 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT506063 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT506582 MIER3 MIER family member 3 2 4
MIRT506606 MAT2A methionine adenosyltransferase 2A 2 4
MIRT506844 KIF23 kinesin family member 23 2 6
MIRT508536 RPP14 ribonuclease P/MRP subunit p14 2 4
MIRT509669 ZNF354B zinc finger protein 354B 2 10
MIRT511170 MBNL3 muscleblind like splicing regulator 3 2 6
MIRT512147 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT512831 ID4 inhibitor of DNA binding 4, HLH protein 2 6
MIRT514558 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515856 AJAP1 adherens junctions associated protein 1 2 4
MIRT521848 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT525364 SYNM synemin 2 2
MIRT527120 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT527271 FBLN2 fibulin 2 2 2
MIRT527439 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527658 CD300E CD300e molecule 2 2
MIRT528334 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529033 EXOC8 exocyst complex component 8 2 2
MIRT529321 PDE5A phosphodiesterase 5A 2 2
MIRT529677 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT529846 SMTN smoothelin 2 2
MIRT530385 ZNF431 zinc finger protein 431 2 2
MIRT530913 GPR85 G protein-coupled receptor 85 2 2
MIRT531794 KDR kinase insert domain receptor 2 2
MIRT532246 KLF2 Kruppel like factor 2 2 4
MIRT532658 CBX7 chromobox 7 2 2
MIRT533630 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT534811 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT534975 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536588 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT536779 HNRNPD heterogeneous nuclear ribonucleoprotein D 2 2
MIRT538764 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539294 ANGEL2 angel homolog 2 2 2
MIRT539621 SHISA9 shisa family member 9 2 2
MIRT539651 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540347 OPHN1 oligophrenin 1 2 2
MIRT540413 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541396 CDC27 cell division cycle 27 2 2
MIRT542916 HSBP1 heat shock factor binding protein 1 2 2
MIRT544710 EIF5A eukaryotic translation initiation factor 5A 2 4
MIRT544998 MFF mitochondrial fission factor 2 4
MIRT553289 TSPAN3 tetraspanin 3 2 2
MIRT553455 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT553782 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT554656 ROBO1 roundabout guidance receptor 1 2 2
MIRT555104 PURB purine rich element binding protein B 2 2
MIRT557235 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT560861 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561545 SON SON DNA binding protein 2 2
MIRT561554 SLMO2 PRELI domain containing 3B 2 2
MIRT563764 ZNF678 zinc finger protein 678 2 2
MIRT565653 SIX4 SIX homeobox 4 2 2
MIRT568080 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568759 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569078 CADM2 cell adhesion molecule 2 2 2
MIRT569509 THYN1 thymocyte nuclear protein 1 2 2
MIRT571268 CDKN2AIP CDKN2A interacting protein 2 2
MIRT571809 PHF19 PHD finger protein 19 2 2
MIRT572554 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT573782 SLC24A4 solute carrier family 24 member 4 2 4
MIRT576441 Ccdc115 coiled-coil domain containing 115 2 10
MIRT576712 Slc30a3 solute carrier family 30 (zinc transporter), member 3 2 3
MIRT608377 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608484 NKTR natural killer cell triggering receptor 2 6
MIRT610186 FAM49A family with sequence similarity 49 member A 2 2
MIRT611631 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT613534 TRA2B transformer 2 beta homolog 2 2
MIRT616221 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT622370 SALL1 spalt like transcription factor 1 2 2
MIRT624371 CDK12 cyclin dependent kinase 12 2 2
MIRT624995 ZNF665 zinc finger protein 665 2 4
MIRT626875 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627737 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT628490 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT633647 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 4
MIRT634028 SLC30A3 solute carrier family 30 member 3 2 3
MIRT635923 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638287 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT641959 RNF115 ring finger protein 115 2 2
MIRT643573 CTNNA3 catenin alpha 3 2 2
MIRT645180 NOL9 nucleolar protein 9 2 4
MIRT647497 ZNF639 zinc finger protein 639 2 2
MIRT647682 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT648422 MYOZ3 myozenin 3 2 2
MIRT650113 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT651076 ZNF518B zinc finger protein 518B 2 4
MIRT651415 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT651456 XKR4 XK related 4 2 2
MIRT653619 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653637 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654896 POU2F1 POU class 2 homeobox 1 2 2
MIRT656483 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT658016 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit 2 2
MIRT658041 FZD10 frizzled class receptor 10 2 2
MIRT660093 BTBD3 BTB domain containing 3 2 2
MIRT663923 MAGEF1 MAGE family member F1 2 2
MIRT665882 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT669051 CEP128 centrosomal protein 128 2 2
MIRT669711 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT686812 SNX2 sorting nexin 2 2 4
MIRT689883 SOD2 superoxide dismutase 2 2 2
MIRT693274 GLRX2 glutaredoxin 2 2 4
MIRT697056 BCAR1 BCAR1, Cas family scaffolding protein 2 2
MIRT703297 GID4 GID complex subunit 4 homolog 2 2
MIRT704087 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT707719 CDC6 cell division cycle 6 2 2
MIRT708136 GK5 glycerol kinase 5 (putative) 2 2
MIRT709212 KLHL30 kelch like family member 30 2 2
MIRT710062 RWDD2A RWD domain containing 2A 2 2
MIRT712770 POU6F2 POU class 6 homeobox 2 2 2
MIRT715073 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715387 TADA3 transcriptional adaptor 3 2 2
MIRT717712 NCKAP1 NCK associated protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548t Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-548t Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-548t Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-548t Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-548t Vincristine 5978 approved sensitive cell line (W1)
hsa-miR-548t-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-548t-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548t-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

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