pre-miRNA Information
pre-miRNA hsa-mir-412   
Genomic Coordinates chr14: 101065447 - 101065537
Synonyms MIRN412, hsa-mir-412, MIR412
Description Homo sapiens miR-412 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-412-3p
Sequence 54| ACUUCACCUGGUCCACUAGCCGU |76
Evidence Not_experimental
Experiments
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
rs61992671 18 GWAS
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs369997462 1 dbSNP
rs1439693090 7 dbSNP
rs1301668924 11 dbSNP
rs534204576 13 dbSNP
rs775386036 14 dbSNP
rs762832140 15 dbSNP
rs1203323285 16 dbSNP
rs61992671 18 dbSNP
rs1022012324 19 dbSNP
rs1207609936 20 dbSNP
rs139967426 21 dbSNP
rs539487075 22 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol MYO9B   
Synonyms CELIAC4, MYR5
Description myosin IXB
Transcript NM_001130065   
Other Transcripts NM_004145   
Expression
Putative miRNA Targets on MYO9B
3'UTR of MYO9B
(miRNA target sites are highlighted)
>MYO9B|NM_001130065|3'UTR
   1 GGGCCCCCTGCGCCTGCTCTCCCTTGCCCCGGCGCGCCCACCCCGAGCCCCCTCCCCACCGTGGCCGCCCCTCCACGACG
  81 AAGGCCGTCGTCCTTCGTAACGGTCAGAGTGAAGACCCCCCGGCGGACCCCCATCATGCCCACGGCCAACATCAAGCTCC
 161 CACCAGGCCTGCCCTCCCACCTGCCTCGCTGGGCACCGGGTGCCCGGGAGGCGGCTGCCCCAGTGCGGCGCCGGGAGCCA
 241 CCTGCCCGCCGCCCGGACCAGATACATTCCGTGTACATCACGCCCGGGGCAGACCTGCCAGTGCAGGGCGCCCTGGAGCC
 321 CCTAGAAGAGGATGGCCAGCCACCTGGGGCCAAGCGGAGGTACTCGGATCCCCCAACGTACTGCCTGCCCCCCGCCTCGG
 401 GCCAGACCAATGGCTGAGAGCCACAGCTGACAAAGTCTGCATGTCCGAGGACGGCCCCTGCACTGGAGCTGGGCGCCAGA
 481 GCTGCAGAGCTAGTGTTCGGCCCTCAGAGAAGGATCCAGAATCAAAAGCTCAAGAGTGACGTGAGGTGGGCACCGGCCCC
 561 AAGTGCAGAGTCAAGGCAGGGAGAGGCCGGCTGGAGCCAGGCCCCCTCGCACGCAGCCCCCAAATCATGGACGCACCTGT
 641 GGGGAGCACCACATCTCCACCTGCGGCCTCACATCTCCCCACTCCCCTTTTTGTACGTTTAACTGTTTCTTTGTACGTGG
 721 TTTACGTAACTTTAAACTGTAACAGCCTTAATGGAAGACCAAATGGTTTTTTATATGTGTATGTACAAAGTTTTCTATTA
 801 ACGCTGCCCGTCTCCCTTATAACCTGGACGTGAGCTGTCAGAGCAGAAGCCACTAGGCCACTGCGCGTCTGAGGCTCAGA
 881 CCCTGCTGTGGTTGGCTTGGGGTGGCCAATGGGCTGGGACCCTCCATGAGAGTTTTGGACACTTGGGTCACCTGACCCGT
 961 GCCTCTCTGACACATGTCTCCGGGGGGCAGCCACCTGGCCAATGTGCATTTTTGCACATGCTGGAACCTTCCATGGGGGT
1041 CTGGGCTATTGGCTGGAGCCAGGACATGAGTCAGGGGCACCATGGACCTCACGTGCCAGGGAGACTTGAATGTGGCTGTC
1121 ACTCTTCCGGACGCCAAGGGCTGCAGGAGGCTGCTTTTGGCACTACCCACCCCGTGTGACAGAATAGGAGCCAGCGACTC
1201 AGGACTGCTCACGGGTCAGGAGGGCAACGCCTGAAGTCAGACCTCCCTATAGGTCAACAGGGACAACCTGGGGATCTCTG
1281 GAGCAGGGCCCTCCTCTCTCAGGCTTGGCCCACTCCCCCAGACACCTGGACACGTGGCCACAAATCTGGGACAAGGGGCC
1361 CCCGCACAGCATGAAATAAAAAGTGCCTGAGAAGTGTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugccgaucacCUGGUC-CACUUCa 5'
                    |::||| |||||| 
Target 5' ccttcgtaacGGTCAGAGTGAAGa 3'
92 - 115 125.00 -14.90
2
miRNA  3' ugCCGAUCAC---CUGGUCCACUUCa 5'
            ||| || |   |:||:| ||:|| 
Target 5' aaGGC-AGGGAGAGGCCGGCTGGAGc 3'
573 - 597 116.00 -17.90
3
miRNA  3' ugcCGAUCACCUGGUCCACuuca 5'
             |||:| | |||:||||    
Target 5' ctcGCTGG-GCACCGGGTGcccg 3'
185 - 206 111.00 -18.36
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
743378 492 ClinVar
COSN28875145 7 COSMIC
COSN28882744 26 COSMIC
COSN19666333 50 COSMIC
COSN13787206 62 COSMIC
COSN25896968 93 COSMIC
COSM4705108 109 COSMIC
COSM6428884 113 COSMIC
COSM8499222 117 COSMIC
COSM5854956 120 COSMIC
COSM4502196 130 COSMIC
COSM9732568 131 COSMIC
COSM6443750 136 COSMIC
COSM3692475 140 COSMIC
COSM1216466 143 COSMIC
COSM6004145 144 COSMIC
COSM9737157 146 COSMIC
COSM6361440 147 COSMIC
COSM4131373 149 COSMIC
COSM9697995 152 COSMIC
COSM7646161 153 COSMIC
COSM8626578 153 COSMIC
COSM4131375 154 COSMIC
COSM6720724 154 COSMIC
COSM4502327 161 COSMIC
COSM6392879 162 COSMIC
COSM4502353 163 COSMIC
COSM4502355 163 COSMIC
COSM9712043 165 COSMIC
COSM9627369 169 COSMIC
COSM8490184 175 COSMIC
COSM4075282 176 COSMIC
COSM8376321 179 COSMIC
COSM3891858 180 COSMIC
COSM3388701 189 COSMIC
COSM6720744 189 COSMIC
COSM6720702 195 COSMIC
COSM3285645 198 COSMIC
COSM9722924 201 COSMIC
COSM5592026 205 COSMIC
COSM4131377 207 COSMIC
COSM5464421 219 COSMIC
COSM8135156 226 COSMIC
COSM8089366 227 COSMIC
COSM1391397 230 COSMIC
COSM5981482 252 COSMIC
COSM3285647 253 COSMIC
COSM9610679 262 COSMIC
COSM6874392 268 COSMIC
COSM9684296 301 COSMIC
COSM8749391 307 COSMIC
COSM6720732 313 COSMIC
COSM5623179 314 COSMIC
COSM9028797 321 COSMIC
COSM3737974 323 COSMIC
COSM7221933 332 COSMIC
COSM9282754 335 COSMIC
COSM6862488 336 COSMIC
COSM5981484 338 COSMIC
COSM3530275 358 COSMIC
COSM8893103 359 COSMIC
COSM6346621 364 COSMIC
COSM8606115 379 COSMIC
COSM7417811 407 COSMIC
COSM4829538 419 COSMIC
COSM4705110 421 COSMIC
COSM6578574 427 COSMIC
COSM4503309 429 COSMIC
COSM6506057 464 COSMIC
COSM9397459 468 COSMIC
COSM6857462 474 COSMIC
COSM6363724 482 COSMIC
COSM8542288 483 COSMIC
COSM9751728 499 COSMIC
COSM4638226 508 COSMIC
COSM6195650 525 COSMIC
COSM7649485 525 COSMIC
COSN28858920 565 COSMIC
COSN24397461 584 COSMIC
COSN31489873 614 COSMIC
COSN27230832 684 COSMIC
COSN31537406 697 COSMIC
COSN26643860 764 COSMIC
COSN26641181 767 COSMIC
COSN19657897 983 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs748873930 1 dbSNP
rs754684860 6 dbSNP
rs1347994226 7 dbSNP
rs368557677 8 dbSNP
rs147843677 17 dbSNP
rs939816881 20 dbSNP
rs1213577498 23 dbSNP
rs780141405 23 dbSNP
rs748523313 26 dbSNP
rs757528904 27 dbSNP
rs772646727 28 dbSNP
rs1483161068 29 dbSNP
rs1221558475 31 dbSNP
rs1213730082 41 dbSNP
rs1024867781 42 dbSNP
rs778408867 43 dbSNP
rs902437309 44 dbSNP
rs1490763597 45 dbSNP
rs1200071234 47 dbSNP
rs747584630 50 dbSNP
rs554879502 51 dbSNP
rs574631162 61 dbSNP
rs759627311 62 dbSNP
rs770060076 64 dbSNP
rs1301459707 67 dbSNP
rs1367851692 68 dbSNP
rs774075582 69 dbSNP
rs761583825 72 dbSNP
rs1325176476 81 dbSNP
rs985546190 88 dbSNP
rs372737320 90 dbSNP
rs1342509142 91 dbSNP
rs1244810487 93 dbSNP
rs749402824 97 dbSNP
rs750331712 99 dbSNP
rs760657782 101 dbSNP
rs1455187477 106 dbSNP
rs1260999019 112 dbSNP
rs765761161 113 dbSNP
rs1195487754 114 dbSNP
rs753423984 120 dbSNP
rs375938399 121 dbSNP
rs369763771 126 dbSNP
rs1161936635 128 dbSNP
rs778637397 136 dbSNP
rs1425741480 138 dbSNP
rs543449247 139 dbSNP
rs758828474 140 dbSNP
rs1422573176 141 dbSNP
rs536114649 142 dbSNP
rs372528782 143 dbSNP
rs781091384 144 dbSNP
rs376729646 145 dbSNP
rs769823610 146 dbSNP
rs1208270435 147 dbSNP
rs1312495926 148 dbSNP
rs190936398 149 dbSNP
rs373088121 150 dbSNP
rs1353793661 153 dbSNP
rs773010575 153 dbSNP
rs760485644 154 dbSNP
rs1299625909 155 dbSNP
rs980350285 156 dbSNP
rs766340539 157 dbSNP
rs753233461 158 dbSNP
rs1206826077 160 dbSNP
rs759076303 161 dbSNP
rs1035730857 162 dbSNP
rs1460944613 163 dbSNP
rs1181804755 164 dbSNP
rs764910246 165 dbSNP
rs867336837 167 dbSNP
rs1396303260 169 dbSNP
rs752368500 170 dbSNP
rs758175328 171 dbSNP
rs778235180 175 dbSNP
rs377015078 176 dbSNP
rs1194460490 177 dbSNP
rs1405933211 180 dbSNP
rs548470647 181 dbSNP
rs757646709 182 dbSNP
rs1407914240 184 dbSNP
rs1396260553 185 dbSNP
rs562438441 186 dbSNP
rs369080977 188 dbSNP
rs780154861 189 dbSNP
rs1251976809 193 dbSNP
rs749460658 194 dbSNP
rs768893704 195 dbSNP
rs373912518 196 dbSNP
rs746839076 198 dbSNP
rs377061155 199 dbSNP
rs531101989 201 dbSNP
rs776629210 206 dbSNP
rs117297085 207 dbSNP
rs184066363 210 dbSNP
rs570571598 211 dbSNP
rs763843321 216 dbSNP
rs1179134220 222 dbSNP
rs1388909247 224 dbSNP
rs1432151161 224 dbSNP
rs751227416 225 dbSNP
rs940783670 226 dbSNP
rs757636548 230 dbSNP
rs767810787 231 dbSNP
rs750917703 232 dbSNP
rs1040883560 233 dbSNP
rs756634070 234 dbSNP
rs780065513 236 dbSNP
rs1326187922 237 dbSNP
rs1285043950 240 dbSNP
rs1396135969 241 dbSNP
rs749370847 243 dbSNP
rs755131680 244 dbSNP
rs779098226 247 dbSNP
rs200621726 252 dbSNP
rs770730753 253 dbSNP
rs948998087 254 dbSNP
rs769226425 256 dbSNP
rs776341862 260 dbSNP
rs745770449 272 dbSNP
rs1426426934 274 dbSNP
rs775002645 284 dbSNP
rs547079147 285 dbSNP
rs775074142 286 dbSNP
rs1371051372 292 dbSNP
rs891484651 293 dbSNP
rs762539578 296 dbSNP
rs763763179 297 dbSNP
rs1330282425 299 dbSNP
rs55732173 306 dbSNP
rs534850014 307 dbSNP
rs750781141 310 dbSNP
rs1381766516 313 dbSNP
rs756542406 314 dbSNP
rs766881119 315 dbSNP
rs1427616169 317 dbSNP
rs1229412537 319 dbSNP
rs374094759 321 dbSNP
rs554461423 322 dbSNP
rs1225154736 323 dbSNP
rs1184399740 324 dbSNP
rs367630188 326 dbSNP
rs372531947 328 dbSNP
rs755842130 329 dbSNP
rs371547228 335 dbSNP
rs199852311 336 dbSNP
rs1188842525 337 dbSNP
rs375487110 338 dbSNP
rs780135957 339 dbSNP
rs749277786 341 dbSNP
rs768257894 342 dbSNP
rs773754218 352 dbSNP
rs761484115 353 dbSNP
rs1415933454 354 dbSNP
rs866737899 356 dbSNP
rs200913002 357 dbSNP
rs773564592 359 dbSNP
rs761009585 360 dbSNP
rs1248701804 363 dbSNP
rs372224201 364 dbSNP
rs754316617 365 dbSNP
rs1214292669 374 dbSNP
rs1262963261 375 dbSNP
rs760087706 379 dbSNP
rs992073541 380 dbSNP
rs765312725 382 dbSNP
rs752753011 386 dbSNP
rs758580130 388 dbSNP
rs777871372 389 dbSNP
rs751896302 390 dbSNP
rs755940808 391 dbSNP
rs780041716 392 dbSNP
rs377113257 394 dbSNP
rs768505727 395 dbSNP
rs369063873 396 dbSNP
rs747621282 397 dbSNP
rs1284942459 398 dbSNP
rs1373082335 401 dbSNP
rs771666621 402 dbSNP
rs911091653 406 dbSNP
rs935900213 412 dbSNP
rs868781513 416 dbSNP
rs772740209 417 dbSNP
rs1447976625 418 dbSNP
rs1261958560 419 dbSNP
rs1459533320 426 dbSNP
rs1322977618 427 dbSNP
rs868851670 429 dbSNP
rs771267005 430 dbSNP
rs777004705 433 dbSNP
rs1480211943 438 dbSNP
rs1175246916 441 dbSNP
rs1414170783 443 dbSNP
rs1472875721 444 dbSNP
rs759997777 447 dbSNP
rs765668984 453 dbSNP
rs1416195264 458 dbSNP
rs1407110590 459 dbSNP
rs1411741258 463 dbSNP
rs1335138272 464 dbSNP
rs752765771 465 dbSNP
rs1440524703 469 dbSNP
rs923585726 471 dbSNP
rs1310222031 472 dbSNP
rs559048512 475 dbSNP
rs764274950 478 dbSNP
rs945720227 478 dbSNP
rs1281882272 482 dbSNP
rs751808879 485 dbSNP
rs1220426565 486 dbSNP
rs371996021 487 dbSNP
rs1436851523 490 dbSNP
rs201009683 492 dbSNP
rs1253715202 495 dbSNP
rs762474493 496 dbSNP
rs1198630020 497 dbSNP
rs1266634558 498 dbSNP
rs753687237 499 dbSNP
rs754884821 501 dbSNP
rs375814398 502 dbSNP
rs757818366 503 dbSNP
rs1170642515 504 dbSNP
rs777317443 505 dbSNP
rs1326765952 507 dbSNP
rs867833932 507 dbSNP
rs369135686 508 dbSNP
rs1157691434 509 dbSNP
rs1408185874 510 dbSNP
rs1333314932 514 dbSNP
rs1438060834 516 dbSNP
rs1274924126 517 dbSNP
rs1338101470 520 dbSNP
rs1225743249 525 dbSNP
rs1276273326 531 dbSNP
rs1164251174 540 dbSNP
rs1410451044 548 dbSNP
rs1342648531 550 dbSNP
rs770604769 551 dbSNP
rs776916711 554 dbSNP
rs1015200014 555 dbSNP
rs1453238086 556 dbSNP
rs747588492 561 dbSNP
rs770252449 562 dbSNP
rs775828488 564 dbSNP
rs1190791053 566 dbSNP
rs763564034 567 dbSNP
rs139461409 569 dbSNP
rs1162046889 571 dbSNP
rs1393600638 573 dbSNP
rs544897772 579 dbSNP
rs1414062358 582 dbSNP
rs1030364528 583 dbSNP
rs562136835 584 dbSNP
rs953582640 590 dbSNP
rs986200856 592 dbSNP
rs991792020 598 dbSNP
rs1292991631 603 dbSNP
rs531236160 605 dbSNP
rs544537221 607 dbSNP
rs771908284 608 dbSNP
rs990001285 614 dbSNP
rs1306056253 615 dbSNP
rs913142803 622 dbSNP
rs981836213 627 dbSNP
rs1278528239 641 dbSNP
rs1178049691 645 dbSNP
rs1431086028 646 dbSNP
rs1045802126 649 dbSNP
rs1348083927 650 dbSNP
rs1473256905 657 dbSNP
rs923700455 662 dbSNP
rs1203545288 663 dbSNP
rs142487463 664 dbSNP
rs1485658602 668 dbSNP
rs533395902 673 dbSNP
rs1310634127 676 dbSNP
rs1300802493 679 dbSNP
rs1055585769 682 dbSNP
rs755539133 687 dbSNP
rs1352352028 688 dbSNP
rs1006394559 689 dbSNP
rs1483548895 691 dbSNP
rs1012854190 697 dbSNP
rs115882292 698 dbSNP
rs35656730 698 dbSNP
rs1304350181 700 dbSNP
rs1464318864 702 dbSNP
rs1358382733 710 dbSNP
rs1159300056 712 dbSNP
rs942604857 714 dbSNP
rs567013962 717 dbSNP
rs900994482 718 dbSNP
rs865789964 721 dbSNP
rs529405728 722 dbSNP
rs953414777 723 dbSNP
rs1007566863 729 dbSNP
rs1032393259 737 dbSNP
rs887198004 741 dbSNP
rs1005509967 742 dbSNP
rs1372186877 755 dbSNP
rs1314714462 758 dbSNP
rs1017344987 769 dbSNP
rs1378082950 771 dbSNP
rs150928154 773 dbSNP
rs1327933319 774 dbSNP
rs1458476248 788 dbSNP
rs1386058547 794 dbSNP
rs1013160338 795 dbSNP
rs1157731926 796 dbSNP
rs548084847 805 dbSNP
rs913094123 805 dbSNP
rs1167455626 806 dbSNP
rs564973054 812 dbSNP
rs397859613 814 dbSNP
rs1438138957 821 dbSNP
rs1255904329 823 dbSNP
rs1189682798 826 dbSNP
rs3842959 833 dbSNP
rs971529020 834 dbSNP
rs1232747380 835 dbSNP
rs1357069612 839 dbSNP
rs1277322240 840 dbSNP
rs1267304000 844 dbSNP
rs746237810 847 dbSNP
rs1321108864 855 dbSNP
rs981420918 860 dbSNP
rs3760630 866 dbSNP
rs1195658387 873 dbSNP
rs1362805530 875 dbSNP
rs756699382 880 dbSNP
rs1387008728 881 dbSNP
rs928280099 882 dbSNP
rs977595588 884 dbSNP
rs1291356734 887 dbSNP
rs936997035 895 dbSNP
rs923647949 903 dbSNP
rs1385214570 906 dbSNP
rs1055512050 911 dbSNP
rs1451663086 912 dbSNP
rs908979105 914 dbSNP
rs537369371 918 dbSNP
rs547358905 919 dbSNP
rs989279383 929 dbSNP
rs189045537 934 dbSNP
rs34900865 936 dbSNP
rs1452592411 937 dbSNP
rs560595320 938 dbSNP
rs1036921179 950 dbSNP
rs1190576844 954 dbSNP
rs1339738902 955 dbSNP
rs529640978 956 dbSNP
rs570389972 973 dbSNP
rs1052031551 974 dbSNP
rs975277077 975 dbSNP
rs539078583 976 dbSNP
rs1370673461 988 dbSNP
rs1309104143 990 dbSNP
rs922534967 991 dbSNP
rs1369089626 997 dbSNP
rs775881375 999 dbSNP
rs1478465549 1000 dbSNP
rs552540637 1003 dbSNP
rs1197063583 1010 dbSNP
rs572648440 1011 dbSNP
rs933790929 1017 dbSNP
rs1432617220 1023 dbSNP
rs763473905 1024 dbSNP
rs1207128723 1027 dbSNP
rs1482072497 1029 dbSNP
rs886984355 1031 dbSNP
rs958102591 1036 dbSNP
rs541511678 1037 dbSNP
rs1346651672 1039 dbSNP
rs1272679656 1054 dbSNP
rs1232088398 1061 dbSNP
rs1009677915 1065 dbSNP
rs941431509 1067 dbSNP
rs555933804 1068 dbSNP
rs1349234287 1076 dbSNP
rs56318210 1081 dbSNP
rs55648247 1082 dbSNP
rs1404826162 1083 dbSNP
rs544909735 1087 dbSNP
rs564807493 1088 dbSNP
rs1012937003 1090 dbSNP
rs958334844 1090 dbSNP
rs533660144 1091 dbSNP
rs907457841 1092 dbSNP
rs140800874 1096 dbSNP
rs1032250823 1097 dbSNP
rs774552029 1102 dbSNP
rs1199518139 1106 dbSNP
rs1272847577 1110 dbSNP
rs919387579 1111 dbSNP
rs989616989 1113 dbSNP
rs1226082806 1125 dbSNP
rs749056569 1126 dbSNP
rs9582 1127 dbSNP
rs114503509 1128 dbSNP
rs1342568562 1129 dbSNP
rs1053696141 1132 dbSNP
rs1452175815 1135 dbSNP
rs1371133975 1142 dbSNP
rs1161426379 1148 dbSNP
rs893848183 1169 dbSNP
rs1163698220 1171 dbSNP
rs1473772389 1175 dbSNP
rs1473624335 1177 dbSNP
rs1465042593 1179 dbSNP
rs1249457659 1181 dbSNP
rs767733784 1189 dbSNP
rs933905711 1190 dbSNP
rs1340396869 1193 dbSNP
rs1021045253 1198 dbSNP
rs982696795 1201 dbSNP
rs549175534 1202 dbSNP
rs1382157853 1207 dbSNP
rs902974840 1207 dbSNP
rs1322756995 1215 dbSNP
rs1433190662 1227 dbSNP
rs908357352 1231 dbSNP
rs941225577 1232 dbSNP
rs1342767651 1234 dbSNP
rs1234352249 1235 dbSNP
rs745755682 1237 dbSNP
rs1333026155 1238 dbSNP
rs1411583109 1241 dbSNP
rs1035575782 1242 dbSNP
rs1449793711 1248 dbSNP
rs568268798 1249 dbSNP
rs1230412483 1250 dbSNP
rs1261419382 1258 dbSNP
rs991426131 1269 dbSNP
rs750588589 1274 dbSNP
rs1015931605 1275 dbSNP
rs1453803479 1277 dbSNP
rs963086496 1279 dbSNP
rs1343249654 1280 dbSNP
rs894570800 1282 dbSNP
rs948663512 1283 dbSNP
rs972186087 1285 dbSNP
rs1045761230 1288 dbSNP
rs1465185886 1290 dbSNP
rs907237070 1296 dbSNP
rs1486609553 1298 dbSNP
rs933457272 1299 dbSNP
rs987643981 1305 dbSNP
rs1430338163 1307 dbSNP
rs910744713 1309 dbSNP
rs943621110 1310 dbSNP
rs1427535216 1316 dbSNP
rs530645703 1319 dbSNP
rs1160752471 1321 dbSNP
rs1363886848 1322 dbSNP
rs1476729669 1322 dbSNP
rs550343916 1332 dbSNP
rs1053998115 1335 dbSNP
rs893773100 1336 dbSNP
rs945398011 1337 dbSNP
rs1042841067 1338 dbSNP
rs183604490 1342 dbSNP
rs1307313890 1344 dbSNP
rs1279536041 1347 dbSNP
rs999094792 1358 dbSNP
rs1343644293 1361 dbSNP
rs539344224 1364 dbSNP
rs893269720 1369 dbSNP
rs1353908574 1371 dbSNP
rs894349455 1373 dbSNP
rs1307906531 1376 dbSNP
rs1461261551 1377 dbSNP
rs1012808016 1381 dbSNP
rs1011758872 1382 dbSNP
rs1316543950 1383 dbSNP
rs1045636 1387 dbSNP
rs1237062349 1392 dbSNP
rs1016193787 1397 dbSNP
rs1182327496 1414 dbSNP
rs1257806665 1417 dbSNP
rs552550327 1420 dbSNP
rs1350027467 1422 dbSNP
rs1022429349 1426 dbSNP
rs1211450762 1432 dbSNP
rs963767495 1437 dbSNP
rs1256584220 1440 dbSNP
rs772053063 1441 dbSNP
rs552527243 1442 dbSNP
rs1212507312 1443 dbSNP
rs1484532431 1451 dbSNP
rs1045645 1455 dbSNP
rs1229133683 1458 dbSNP
rs1250876739 1466 dbSNP
rs1418116881 1467 dbSNP
rs1156376471 1470 dbSNP
rs975170167 1472 dbSNP
rs374750371 1473 dbSNP
rs1379546955 1491 dbSNP
rs1304445057 1502 dbSNP
rs1445321940 1502 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_ControlA_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset Chi_ControlA_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell Control A
Location of target site ENST00000595618.1 | 3UTR | ugaagaccccccggcg
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
Click to see details
138 hsa-miR-412-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT005780 ACVR1C activin A receptor type 1C 1 1
MIRT062013 YOD1 YOD1 deubiquitinase 2 2
MIRT345112 ATXN7L3 ataxin 7 like 3 2 2
MIRT383735 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 2
MIRT396956 CELF1 CUGBP Elav-like family member 1 2 2
MIRT439280 XIAP X-linked inhibitor of apoptosis 1 1
MIRT439313 VAT1 vesicle amine transport 1 1 1
MIRT439375 TUBA1A tubulin alpha 1a 1 1
MIRT439418 TMOD1 tropomodulin 1 1 1
MIRT439503 SURF4 surfeit 4 1 1
MIRT439563 SON SON DNA binding protein 1 1
MIRT439598 SLC3A2 solute carrier family 3 member 2 1 1
MIRT439670 SETD1B SET domain containing 1B 1 1
MIRT439767 RMND5A required for meiotic nuclear division 5 homolog A 1 1
MIRT439922 PPL periplakin 1 1
MIRT439947 PLEKHA6 pleckstrin homology domain containing A6 1 1
MIRT439952 PLCB4 phospholipase C beta 4 1 1
MIRT439961 PKD1 polycystin 1, transient receptor potential channel interacting 1 1
MIRT440005 PEG3 paternally expressed 3 1 1
MIRT440061 OSBPL8 oxysterol binding protein like 8 1 1
MIRT440166 MYH14 myosin heavy chain 14 1 1
MIRT440276 MAPK8IP1 mitogen-activated protein kinase 8 interacting protein 1 1 1
MIRT440437 IPO13 importin 13 1 1
MIRT440441 INTS3 integrator complex subunit 3 1 1
MIRT440448 INS insulin 1 1
MIRT440461 IGF2R insulin like growth factor 2 receptor 1 1
MIRT440472 IARS isoleucyl-tRNA synthetase 1 1
MIRT440530 GUCY1A3 guanylate cyclase 1 soluble subunit alpha 1 1
MIRT440542 GOLGA2 golgin A2 1 1
MIRT440569 GIGYF1 GRB10 interacting GYF protein 1 1 1
MIRT440608 FTSJD2 cap methyltransferase 1 1 1
MIRT440750 EEF1A2 eukaryotic translation elongation factor 1 alpha 2 1 1
MIRT440781 DOT1L DOT1 like histone lysine methyltransferase 1 1
MIRT440804 DNAJA4 DnaJ heat shock protein family (Hsp40) member A4 1 1
MIRT440867 CSDE1 cold shock domain containing E1 1 1
MIRT440890 CPEB4 cytoplasmic polyadenylation element binding protein 4 1 1
MIRT440917 COL1A1 collagen type I alpha 1 chain 1 1
MIRT440967 CDH22 cadherin 22 1 1
MIRT440968 CDH2 cadherin 2 1 1
MIRT441024 CALR calreticulin 1 1
MIRT441278 ACTB actin beta 1 1
MIRT448421 TNFAIP3 TNF alpha induced protein 3 2 2
MIRT462833 BCL3 B-cell CLL/lymphoma 3 2 2
MIRT465062 TSR1 TSR1, ribosome maturation factor 2 2
MIRT476050 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT485318 MZT1 mitotic spindle organizing protein 1 2 4
MIRT493584 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 6
MIRT494567 BAK1 BCL2 antagonist/killer 1 2 2
MIRT497393 RALY RALY heterogeneous nuclear ribonucleoprotein 2 2
MIRT503250 ZNF257 zinc finger protein 257 2 10
MIRT503656 ZNF138 zinc finger protein 138 2 10
MIRT505882 RNF219 ring finger protein 219 2 2
MIRT507525 DSTN destrin, actin depolymerizing factor 2 4
MIRT510663 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT514682 ZNF701 zinc finger protein 701 2 4
MIRT515370 ZNF208 zinc finger protein 208 2 6
MIRT525237 KCNJ12 potassium voltage-gated channel subfamily J member 12 2 2
MIRT527963 MTAP methylthioadenosine phosphorylase 2 2
MIRT528482 STAMBPL1 STAM binding protein like 1 2 2
MIRT529909 C1orf64 steroid receptor associated and regulated protein 2 4
MIRT531558 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT532234 KLF2 Kruppel like factor 2 2 4
MIRT532480 HOXA13 homeobox A13 2 2
MIRT535544 P2RY2 purinergic receptor P2Y2 2 2
MIRT547311 NR1D2 nuclear receptor subfamily 1 group D member 2 2 2
MIRT551795 ZNF117 zinc finger protein 117 2 4
MIRT554939 RAP1A RAP1A, member of RAS oncogene family 2 2
MIRT558171 EIF5A2 eukaryotic translation initiation factor 5A2 2 2
MIRT568771 LY6K lymphocyte antigen 6 family member K 2 2
MIRT570766 ZNF99 zinc finger protein 99 2 2
MIRT572405 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT573396 DLC1 DLC1 Rho GTPase activating protein 2 2
MIRT610403 RXRB retinoid X receptor beta 2 2
MIRT610886 SCN8A sodium voltage-gated channel alpha subunit 8 2 2
MIRT611197 TMEM105 transmembrane protein 105 2 2
MIRT611244 ZNF550 zinc finger protein 550 2 2
MIRT615669 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 4
MIRT617974 DOCK4 dedicator of cytokinesis 4 2 2
MIRT619150 ZNF326 zinc finger protein 326 2 2
MIRT619608 MKKS McKusick-Kaufman syndrome 2 2
MIRT621053 DGKD diacylglycerol kinase delta 2 2
MIRT623665 HRK harakiri, BCL2 interacting protein 2 2
MIRT624883 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT624939 MARCH2 membrane associated ring-CH-type finger 2 2 2
MIRT634198 TMOD2 tropomodulin 2 2 4
MIRT636727 AGO2 argonaute 2, RISC catalytic component 2 2
MIRT637741 POLR3K RNA polymerase III subunit K 2 2
MIRT638002 ZC3H13 zinc finger CCCH-type containing 13 2 2
MIRT640395 ZNF785 zinc finger protein 785 2 2
MIRT640505 ANTXR1 anthrax toxin receptor 1 2 2
MIRT641293 SLAMF1 signaling lymphocytic activation molecule family member 1 2 2
MIRT641863 STOML1 stomatin like 1 2 2
MIRT642600 C14orf180 chromosome 14 open reading frame 180 2 2
MIRT642895 CASP1 caspase 1 2 2
MIRT643967 FHL2 four and a half LIM domains 2 2 4
MIRT645237 KCTD12 potassium channel tetramerization domain containing 12 2 2
MIRT646621 CENPL centromere protein L 2 2
MIRT648620 CYB561A3 cytochrome b561 family member A3 2 2
MIRT648908 ZNF551 zinc finger protein 551 2 2
MIRT649439 HIBADH 3-hydroxyisobutyrate dehydrogenase 2 2
MIRT650637 LTF lactotransferrin 2 2
MIRT650971 STARD3NL STARD3 N-terminal like 2 2
MIRT651067 ZNF518B zinc finger protein 518B 2 4
MIRT652384 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT653958 SEPN1 selenoprotein N 2 2
MIRT656885 KIF1C kinesin family member 1C 2 2
MIRT657965 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT658080 FOXR2 forkhead box R2 2 2
MIRT662570 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT663089 METTL10 EEF1A lysine methyltransferase 2 2 2
MIRT683705 ZNF195 zinc finger protein 195 2 2
MIRT683835 ZNF682 zinc finger protein 682 2 2
MIRT706811 APOL4 apolipoprotein L4 2 2
MIRT707575 DYNC2LI1 dynein cytoplasmic 2 light intermediate chain 1 2 2
MIRT708606 ZNF260 zinc finger protein 260 2 2
MIRT708859 TMSB4X thymosin beta 4, X-linked 2 2
MIRT709861 PDIK1L PDLIM1 interacting kinase 1 like 2 2
MIRT709987 RBM41 RNA binding motif protein 41 2 2
MIRT710098 KPNA5 karyopherin subunit alpha 5 2 2
MIRT710211 ENAH ENAH, actin regulator 2 2
MIRT710868 B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 2 2
MIRT710986 SUSD5 sushi domain containing 5 2 2
MIRT711460 RNF145 ring finger protein 145 2 2
MIRT712302 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT713609 SYTL4 synaptotagmin like 4 2 2
MIRT713789 MAK16 MAK16 homolog 2 2
MIRT715480 MYO9B myosin IXB 2 2
MIRT716328 POU5F1 POU class 5 homeobox 1 2 2
MIRT717252 TMEM246 transmembrane protein 246 2 2
MIRT718077 CLIC5 chloride intracellular channel 5 2 2
MIRT718463 EED embryonic ectoderm development 2 2
MIRT718645 NKPD1 NTPase KAP family P-loop domain containing 1 2 2
MIRT718982 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT721078 RPS9 ribosomal protein S9 2 2
MIRT721419 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT721863 CENPJ centromere protein J 2 2
MIRT722492 PNKD paroxysmal nonkinesigenic dyskinesia 2 2
MIRT723391 CALN1 calneuron 1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-412 Gemcitabine approved 60750 Northern blot Mz-ChA-1 human cholangiocarcinoma cell lines 16762633 2006 down-regulated
miR-412 Progesterone approved 5994 Microarray Breast cancer 22330642 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-412 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-412 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-412-3p Verapamil 2520 NSC272366 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-412-3p Doxorubicin 31703 NSC123127 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780)
hsa-miR-412-3p Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (RKO)
hsa-miR-412-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (HCT-116)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780)
hsa-miR-412-3p Doxorubicin 31703 NSC123127 approved sensitive High Anaplastic Thyroid Cancer tissue
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM36)
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM47)
hsa-miR-412-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM43)
hsa-miR-412-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-412-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-412-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-412-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (Panc1-GR1)
hsa-miR-412-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

Error report submission